AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116930 MtrunA17_Chr7g0259471 88.921 343 11 1 1 316 1 343 0.0 601
Msa1116930 MtrunA17_Chr7g0259221 81.050 343 38 1 1 316 3 345 0.0 526
Msa1116930 MtrunA17_Chr4g0066581 51.613 341 130 4 8 313 13 353 6.56e-111 331
Msa1116930 MtrunA17_Chr2g0286721 49.003 351 144 4 1 316 3 353 3.85e-108 324
Msa1116930 MtrunA17_Chr7g0273281 46.440 323 145 2 22 316 43 365 1.54e-89 276
Msa1116930 MtrunA17_Chr8g0373181 44.444 306 142 2 42 319 49 354 1.69e-81 255
Msa1116930 MtrunA17_Chr1g0155221 37.875 367 188 5 2 330 3 367 2.08e-75 240
Msa1116930 MtrunA17_Chr8g0373191 39.667 300 133 3 45 316 44 323 1.05e-65 214
Msa1116930 MtrunA17_Chr5g0404191 42.798 243 135 2 14 256 28 266 6.26e-64 204
Msa1116930 MtrunA17_Chr7g0273271 57.459 181 77 0 39 219 26 206 2.38e-63 200
Msa1116930 MtrunA17_Chr6g0457781 29.969 327 187 7 46 331 111 436 1.48e-34 132
Msa1116930 MtrunA17_Chr7g0250881 29.870 308 179 8 46 318 71 376 2.45e-33 129
Msa1116930 MtrunA17_Chr2g0303731 28.693 352 196 7 9 317 7 346 6.18e-30 119
Msa1116930 MtrunA17_Chr4g0039651 27.824 363 200 11 11 314 14 373 4.89e-29 116
Msa1116930 MtrunA17_Chr6g0486021 28.319 339 208 7 11 314 18 356 2.97e-28 114
Msa1116930 MtrunA17_Chr4g0021771 24.225 355 221 5 9 316 21 374 4.40e-28 114
Msa1116930 MtrunA17_Chr3g0144261 36.364 198 112 4 68 255 32 225 4.92e-28 114
Msa1116930 MtrunA17_Chr2g0282031 24.731 372 224 4 1 316 1 372 5.22e-28 114
Msa1116930 MtrunA17_Chr8g0376611 28.625 269 152 5 89 317 11 279 6.84e-28 113
Msa1116930 MtrunA17_Chr1g0213631 32.549 255 135 6 100 317 48 302 7.21e-28 112
Msa1116930 MtrunA17_Chr8g0376601 29.644 253 138 4 105 317 94 346 4.56e-26 108
Msa1116930 MtrunA17_Chr4g0034681 25.387 323 176 6 52 317 46 360 1.63e-25 106
Msa1116930 MtrunA17_Chr3g0144361 26.398 322 170 6 52 314 44 357 2.15e-25 106
Msa1116930 MtrunA17_Chr2g0303701 28.627 255 145 5 100 317 89 343 9.86e-25 104
Msa1116930 MtrunA17_Chr6g0485661 26.765 340 193 10 23 315 47 377 1.79e-24 103
Msa1116930 MtrunA17_Chr7g0214451 29.502 261 139 4 98 317 94 350 1.96e-24 103
Msa1116930 MtrunA17_Chr1g0213611 28.657 335 195 8 23 317 65 395 1.98e-24 103
Msa1116930 MtrunA17_Chr3g0115721 27.397 292 169 5 66 314 60 351 9.13e-24 101
Msa1116930 MtrunA17_Chr3g0085971 27.737 274 161 5 77 314 79 351 1.17e-23 101
Msa1116930 MtrunA17_Chr4g0004821 29.236 301 181 4 46 314 42 342 4.51e-23 99.4
Msa1116930 MtrunA17_Chr3g0119401 26.647 334 206 8 38 332 90 423 5.08e-23 99.8
Msa1116930 MtrunA17_Chr1g0164871 27.378 347 192 9 27 314 6 351 8.48e-23 99.0
Msa1116930 MtrunA17_Chr1g0164851 27.378 347 192 9 27 314 6 351 9.69e-23 99.0
Msa1116930 MtrunA17_Chr8g0376631 26.648 349 201 7 9 314 7 343 1.86e-22 98.2
Msa1116930 MtrunA17_Chr3g0115741 26.389 288 172 5 77 329 82 364 3.12e-22 97.4
Msa1116930 MtrunA17_Chr3g0115711 28.044 271 159 5 80 315 82 351 3.94e-22 97.1
Msa1116930 MtrunA17_Chr5g0432581 25.070 355 197 9 21 316 6 350 6.28e-22 96.3
Msa1116930 MtrunA17_Chr4g0032021 29.245 318 168 10 52 314 112 427 6.51e-22 96.7
Msa1116930 MtrunA17_Chr5g0437021 28.671 286 168 6 65 314 66 351 9.33e-22 95.9
Msa1116930 MtrunA17_Chr3g0115751 26.027 292 173 5 66 314 65 356 1.64e-21 95.1
Msa1116930 MtrunA17_Chr1g0205691 26.950 282 168 5 80 323 83 364 7.70e-21 93.2
Msa1116930 MtrunA17_Chr5g0420841 27.143 350 191 10 28 314 3 351 9.35e-21 92.8
Msa1116930 MtrunA17_Chr1g0205681 26.740 273 165 3 77 314 81 353 1.10e-20 92.8
Msa1116930 MtrunA17_Chr3g0115781 23.677 359 215 6 25 329 10 363 1.77e-20 92.0
Msa1116930 MtrunA17_Chr5g0394341 27.305 282 167 5 80 323 83 364 2.05e-20 92.0
Msa1116930 MtrunA17_Chr8g0373531 27.160 243 161 4 25 255 4 242 3.04e-20 91.3
Msa1116930 MtrunA17_Chr5g0419321 31.156 199 127 4 54 245 50 245 3.23e-20 91.7
Msa1116930 MtrunA17_Chr2g0290181 27.899 276 149 7 98 330 88 356 3.65e-20 91.3
Msa1116930 MtrunA17_Chr5g0417611 25.939 293 178 6 77 330 81 373 3.74e-20 91.3
Msa1116930 MtrunA17_Chr1g0205671 26.766 269 162 3 81 314 84 352 1.19e-19 89.7
Msa1116930 MtrunA17_Chr5g0403831 28.205 234 155 4 29 255 26 253 1.38e-19 89.4
Msa1116930 MtrunA17_Chr3g0146061 34.000 200 116 6 68 255 32 227 2.21e-19 89.4
Msa1116930 MtrunA17_Chr5g0407441 31.915 188 116 5 68 245 32 217 3.25e-19 88.6
Msa1116930 MtrunA17_Chr8g0390521 22.287 341 213 6 21 315 5 339 3.61e-19 88.2
Msa1116930 MtrunA17_Chr6g0486681 27.273 275 155 8 80 314 86 355 8.85e-19 87.0
Msa1116930 MtrunA17_Chr6g0486671 27.273 275 155 8 80 314 86 355 8.85e-19 87.0
Msa1116930 MtrunA17_Chr3g0128171 25.818 275 165 5 77 314 33 305 1.49e-18 86.3
Msa1116930 MtrunA17_Chr3g0128081 26.007 273 167 5 77 314 80 352 2.79e-18 85.5
Msa1116930 MtrunA17_Chr4g0036021 22.981 322 184 6 52 317 43 356 3.14e-18 85.5
Msa1116930 MtrunA17_Chr8g0390261 27.037 270 162 6 80 314 86 355 6.50e-18 84.3
Msa1116930 MtrunA17_Chr3g0078791 24.815 270 154 5 77 314 25 277 9.76e-17 80.9
Msa1116930 MtrunA17_Chr8g0390141 27.778 270 160 6 80 314 86 355 1.06e-16 80.9
Msa1116930 MtrunA17_Chr4g0065324 26.022 269 165 5 80 314 88 356 2.54e-16 79.7
Msa1116930 MtrunA17_Chr2g0290161 27.273 275 136 8 98 334 21 269 1.53e-15 77.4
Msa1116930 MtrunA17_Chr4g0065311 26.966 267 161 7 82 314 82 348 2.10e-15 77.0
Msa1116930 MtrunA17_Chr8g0370141 29.843 191 116 6 68 245 32 217 2.93e-15 75.9
Msa1116930 MtrunA17_Chr4g0048411 25.098 255 146 6 100 314 103 352 1.12e-14 74.7
Msa1116930 MtrunA17_Chr7g0273261 43.836 73 41 0 244 316 37 109 2.21e-14 72.0
Msa1116930 MtrunA17_Chr4g0048051 26.016 246 145 5 105 314 108 352 5.28e-14 72.8
Msa1116930 MtrunA17_Chr5g0434231 28.659 164 97 3 84 246 9 153 3.92e-13 66.2
Msa1116930 MtrunA17_Chr1g0173341 86.486 37 5 0 280 316 67 103 2.15e-12 63.5
Msa1116930 MtrunA17_Chr7g0257631 23.616 271 165 5 82 314 122 388 2.70e-12 67.4
Msa1116930 MtrunA17_Chr3g0078971 23.549 293 185 7 60 314 62 353 2.67e-11 64.3
Msa1116930 MtrunA17_Chr5g0445601 23.616 271 165 5 82 314 88 354 4.32e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116930 AT2G48020.3 60.542 332 99 2 12 316 5 331 8.71e-140 400
Msa1116930 AT2G48020.4 60.241 332 100 2 12 316 5 331 4.05e-139 399
Msa1116930 AT2G48020.2 60.241 332 100 2 12 316 5 331 2.35e-137 398
Msa1116930 AT2G48020.1 60.241 332 100 2 12 316 5 331 2.35e-137 398
Msa1116930 AT5G18840.1 51.156 346 136 5 2 316 5 348 2.97e-112 335
Msa1116930 AT3G05150.1 50.147 341 136 4 4 316 5 339 7.45e-107 320
Msa1116930 AT3G05150.3 50.147 341 136 4 4 316 5 339 7.45e-107 320
Msa1116930 AT3G05150.2 50.147 341 136 4 4 316 5 339 1.22e-106 320
Msa1116930 AT1G54730.11 50.167 299 122 1 45 316 37 335 5.85e-97 291
Msa1116930 AT1G54730.9 49.833 299 123 1 45 316 37 335 4.70e-96 291
Msa1116930 AT1G54730.7 49.833 299 123 1 45 316 37 335 4.70e-96 291
Msa1116930 AT1G54730.3 49.833 299 123 1 45 316 37 335 3.13e-95 290
Msa1116930 AT1G54730.2 49.833 299 123 1 45 316 37 335 6.32e-95 290
Msa1116930 AT1G54730.8 50.534 281 112 1 45 298 37 317 8.18e-90 274
Msa1116930 AT1G54730.10 50.181 277 111 1 45 294 37 313 4.86e-89 270
Msa1116930 AT1G54730.6 50.181 277 111 1 45 294 37 313 4.86e-89 270
Msa1116930 AT1G54730.4 50.534 281 112 1 45 298 37 317 5.54e-89 273
Msa1116930 AT1G54730.5 50.534 281 112 1 45 298 37 317 1.10e-88 273
Msa1116930 AT1G08920.2 43.027 337 161 2 7 316 3 335 1.91e-86 268
Msa1116930 AT1G08920.3 42.730 337 162 2 7 316 3 335 7.35e-86 266
Msa1116930 AT1G08920.1 42.730 337 162 2 7 316 3 335 2.13e-85 265
Msa1116930 AT3G05155.2 39.577 331 170 2 9 315 2 326 1.33e-81 251
Msa1116930 AT1G19450.1 39.031 351 174 5 4 316 5 353 2.53e-80 253
Msa1116930 AT1G08930.1 43.750 304 144 1 40 316 58 361 7.65e-80 252
Msa1116930 AT1G08930.2 43.750 304 144 1 40 316 58 361 7.65e-80 252
Msa1116930 AT3G05400.1 41.791 335 161 3 9 316 2 329 1.01e-79 250
Msa1116930 AT3G05155.1 39.157 332 172 2 9 316 2 327 4.63e-79 249
Msa1116930 AT3G05165.4 39.701 335 170 3 9 316 4 333 8.07e-79 248
Msa1116930 AT3G05165.5 39.701 335 170 3 9 316 4 333 8.07e-79 248
Msa1116930 AT3G05165.3 39.701 335 170 3 9 316 4 333 1.84e-78 247
Msa1116930 AT3G05165.2 39.701 335 170 3 9 316 4 333 1.84e-78 247
Msa1116930 AT3G05165.1 39.701 335 170 3 9 316 4 333 1.84e-78 247
Msa1116930 AT3G05165.6 39.701 335 170 3 9 316 4 333 2.35e-78 248
Msa1116930 AT3G20460.1 40.058 342 167 3 1 315 25 355 8.01e-78 246
Msa1116930 AT1G75220.1 38.028 355 178 6 1 316 1 352 1.36e-77 246
Msa1116930 AT5G27350.1 39.823 339 168 3 7 316 3 334 3.64e-77 244
Msa1116930 AT3G05160.1 40.122 329 165 3 15 316 1 324 3.68e-77 244
Msa1116930 AT5G27360.4 38.671 331 174 2 16 317 9 339 1.98e-72 231
Msa1116930 AT5G27360.1 38.554 332 175 2 16 318 9 340 6.71e-72 231
Msa1116930 AT5G27360.3 38.554 332 175 2 16 318 57 388 1.68e-71 231
Msa1116930 AT3G05400.2 39.701 335 148 4 9 316 2 309 4.80e-70 225
Msa1116930 AT4G04750.1 39.130 322 165 2 22 314 20 339 1.37e-68 222
Msa1116930 AT4G04750.2 39.130 322 165 2 22 314 20 339 1.37e-68 222
Msa1116930 AT4G04750.3 40.717 307 151 2 37 314 79 383 4.05e-68 222
Msa1116930 AT4G04760.1 40.000 310 154 2 37 316 30 337 7.38e-67 218
Msa1116930 AT3G05160.3 41.241 274 134 1 70 316 2 275 3.33e-65 211
Msa1116930 AT3G05160.2 41.241 274 134 1 70 316 2 275 3.33e-65 211
Msa1116930 AT1G08900.4 38.487 304 160 1 40 316 25 328 1.08e-64 211
Msa1116930 AT4G04760.2 39.735 302 150 2 37 308 30 329 1.50e-64 211
Msa1116930 AT1G08900.1 38.487 304 160 1 40 316 25 328 2.75e-64 211
Msa1116930 AT1G08900.2 38.487 304 160 1 40 316 25 328 2.75e-64 211
Msa1116930 AT1G08890.1 36.716 335 178 4 7 314 1 328 2.21e-62 206
Msa1116930 AT1G08900.5 39.085 284 146 1 60 316 3 286 1.41e-60 200
Msa1116930 AT4G04760.3 40.072 277 136 1 70 316 2 278 8.05e-58 192
Msa1116930 AT1G08900.3 36.513 304 158 2 40 316 25 320 4.88e-57 191
Msa1116930 AT5G27360.2 37.288 236 121 1 110 318 1 236 1.36e-46 162
Msa1116930 AT5G27360.5 37.288 236 121 1 110 318 1 236 1.36e-46 162
Msa1116930 AT5G16150.2 31.046 306 176 6 46 317 111 415 4.46e-35 134
Msa1116930 AT5G16150.1 31.046 306 176 6 46 317 111 415 4.46e-35 134
Msa1116930 AT5G16150.3 31.046 306 176 6 46 317 111 415 4.46e-35 134
Msa1116930 AT5G17010.1 30.025 393 198 15 8 332 17 400 1.49e-28 115
Msa1116930 AT5G17010.3 30.025 393 198 15 8 332 17 400 1.49e-28 115
Msa1116930 AT5G17010.4 30.025 393 198 15 8 332 17 400 1.49e-28 115
Msa1116930 AT1G79820.2 30.795 302 177 4 45 314 59 360 2.80e-28 114
Msa1116930 AT1G79820.1 30.795 302 177 4 45 314 59 360 2.80e-28 114
Msa1116930 AT1G79820.4 30.795 302 177 4 45 314 59 360 2.84e-28 114
Msa1116930 AT1G67300.6 29.276 304 181 5 45 314 56 359 4.57e-28 114
Msa1116930 AT1G67300.7 29.276 304 181 5 45 314 56 359 4.57e-28 114
Msa1116930 AT1G67300.4 29.276 304 181 5 45 314 56 359 4.88e-28 113
Msa1116930 AT1G67300.5 29.276 304 181 5 45 314 56 359 4.88e-28 113
Msa1116930 AT1G67300.2 29.373 303 180 5 46 314 57 359 6.33e-28 114
Msa1116930 AT1G67300.1 29.373 303 180 5 46 314 57 359 7.06e-28 113
Msa1116930 AT1G67300.3 29.373 303 180 5 46 314 57 359 7.06e-28 113
Msa1116930 AT1G20840.2 35.106 188 108 4 68 245 32 215 1.04e-25 108
Msa1116930 AT1G20840.1 35.106 188 108 4 68 245 32 215 1.04e-25 108
Msa1116930 AT1G05030.1 30.065 306 174 6 46 314 85 387 3.52e-25 106
Msa1116930 AT1G05030.2 30.682 264 149 4 84 314 73 335 4.40e-25 105
Msa1116930 AT5G59250.1 29.874 318 166 10 52 314 114 429 8.64e-25 105
Msa1116930 AT3G05960.1 31.095 283 154 7 80 323 80 360 1.46e-24 104
Msa1116930 AT3G03090.1 26.902 368 215 10 2 318 15 379 2.73e-24 103
Msa1116930 AT1G30220.1 28.627 255 140 5 104 317 95 348 3.40e-24 103
Msa1116930 AT2G16120.1 24.375 320 184 5 52 317 42 357 3.81e-24 103
Msa1116930 AT2G20780.1 23.810 336 215 3 22 316 37 372 5.26e-24 102
Msa1116930 AT3G51490.2 35.000 200 114 6 68 255 32 227 1.04e-23 102
Msa1116930 AT3G51490.1 35.000 200 114 6 68 255 32 227 1.08e-23 102
Msa1116930 AT3G51490.3 37.288 177 97 5 89 255 5 177 1.16e-23 102
Msa1116930 AT5G26250.1 29.932 294 165 7 80 334 81 372 3.15e-23 100
Msa1116930 AT2G20780.2 24.567 289 177 3 69 316 26 314 9.88e-23 99.0
Msa1116930 AT2G16130.1 24.688 320 183 6 52 317 42 357 1.02e-22 99.0
Msa1116930 AT3G18830.1 22.812 320 189 4 52 317 52 367 1.45e-22 98.6
Msa1116930 AT2G35740.1 25.271 277 164 4 84 317 73 349 1.65e-22 98.6
Msa1116930 AT2G43330.1 31.390 223 108 5 136 317 130 348 2.77e-22 97.8
Msa1116930 AT4G35300.9 35.437 206 105 7 68 255 32 227 6.10e-22 97.4
Msa1116930 AT4G35300.2 35.437 206 105 7 68 255 32 227 6.10e-22 97.4
Msa1116930 AT4G35300.3 35.437 206 105 7 68 255 32 227 6.10e-22 97.4
Msa1116930 AT4G35300.4 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.8 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.6 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.11 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.1 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.10 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT4G35300.7 35.437 206 105 7 68 255 32 227 6.49e-22 97.1
Msa1116930 AT2G18480.1 29.208 202 132 3 54 248 36 233 7.68e-22 96.7
Msa1116930 AT3G19930.1 27.037 270 162 5 80 314 82 351 9.03e-22 96.3
Msa1116930 AT3G19930.2 27.037 270 162 5 80 314 82 351 9.03e-22 96.3
Msa1116930 AT5G23270.1 27.737 274 161 5 77 314 82 354 4.61e-20 91.3
Msa1116930 AT4G36670.1 28.230 209 143 1 54 255 31 239 2.65e-19 89.0
Msa1116930 AT3G19940.1 27.037 270 161 5 80 314 85 353 2.91e-19 89.0
Msa1116930 AT1G07340.1 27.037 270 161 5 80 314 82 350 3.55e-19 88.6
Msa1116930 AT1G50310.1 27.037 270 162 5 80 314 85 354 3.63e-19 88.6
Msa1116930 AT4G16480.2 26.054 261 150 5 100 317 90 350 5.24e-19 88.2
Msa1116930 AT4G16480.3 26.054 261 150 5 100 317 90 350 5.24e-19 88.2
Msa1116930 AT4G16480.1 26.054 261 150 5 100 317 90 350 5.24e-19 88.2
Msa1116930 AT5G17010.2 27.811 338 197 13 8 314 18 339 1.28e-18 86.7
Msa1116930 AT1G11260.1 25.461 271 165 4 80 314 83 352 1.51e-18 86.7
Msa1116930 AT5G26340.1 27.509 269 160 5 81 314 85 353 2.82e-17 83.2
Msa1116930 AT1G79820.3 29.956 227 135 3 45 247 59 285 2.72e-16 79.7
Msa1116930 AT1G54730.1 58.065 62 26 0 91 152 1 62 4.25e-16 72.4
Msa1116930 AT4G21480.1 26.236 263 154 5 80 308 83 339 1.22e-15 78.2
Msa1116930 AT1G77210.2 24.603 252 150 5 69 280 67 318 1.66e-14 74.7
Msa1116930 AT1G77210.1 24.603 252 150 5 69 280 67 318 1.66e-14 74.7
Msa1116930 AT5G61520.2 25.939 293 175 6 65 315 18 310 4.99e-14 73.2
Msa1116930 AT5G61520.1 25.939 293 175 6 65 315 66 358 6.07e-14 72.8
Msa1116930 AT4G02050.2 24.345 267 168 5 82 314 88 354 2.13e-13 71.2
Msa1116930 AT4G02050.1 24.345 267 168 5 82 314 88 354 2.13e-13 71.2
Msa1116930 AT1G50310.2 26.263 198 111 5 152 314 14 211 9.95e-12 65.9
Msa1116930 AT1G34580.2 25.092 271 165 4 82 314 35 305 2.16e-11 65.1
Msa1116930 AT1G34580.1 25.092 271 165 4 82 314 85 355 2.42e-11 65.1

Find 95 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACTGCTGTGTTGCTTT+TGG 0.193309 7_3:-64987436 Msa1116930:CDS
GTTTGTGGCTCTTATGAATT+TGG 0.220847 7_3:-64988961 Msa1116930:CDS
CTTATGGTCTGCCAGCAATT+AGG 0.223058 7_3:-64986490 Msa1116930:CDS
GGTATAGTTCCTTTGGATAT+TGG 0.232181 7_3:-64988020 Msa1116930:CDS
ATACTCTTATTGTTATTTCT+TGG 0.242689 7_3:-64985977 Msa1116930:three_prime_UTR
TTATGGTCTGCCAGCAATTA+GGG 0.248496 7_3:-64986489 Msa1116930:CDS
ATGATTGTTAGTGGGGCATC+TGG 0.271485 7_3:-64987641 Msa1116930:CDS
AAGGCTCCTCTGCGTTCTTT+TGG 0.284007 7_3:+64987821 None:intergenic
CCCCTTTCGTCCAACGAATT+CGG 0.288600 7_3:+64988318 None:intergenic
GCAACACAGCAGTGGGAATA+AGG 0.294518 7_3:+64987442 None:intergenic
GTATAGTTCCTTTGGATATT+GGG 0.294997 7_3:-64988019 Msa1116930:CDS
GCATCTGGGTCATTCATAAT+TGG 0.302073 7_3:-64987626 Msa1116930:CDS
GAGGGATCTTAATCTGTCTT+TGG 0.321513 7_3:-64988807 Msa1116930:CDS
TTTGGCTCCATCTTGACTTT+CGG 0.336465 7_3:-64988376 Msa1116930:CDS
CTCCAGCTCAAGATGCTATC+AGG 0.340944 7_3:-64988829 Msa1116930:CDS
ACCACATTCATTGCAGTTTG+TGG 0.341420 7_3:-64988976 Msa1116930:CDS
AGGCTGGAAGCCCCTACTTT+TGG 0.349288 7_3:-64986061 Msa1116930:CDS
GTTATTTCTTGGTTTCGATT+AGG 0.361408 7_3:-64985966 Msa1116930:three_prime_UTR
TAATTGGAACAGTACTTTCA+TGG 0.363139 7_3:-64987610 Msa1116930:CDS
TATATAGGGTATAGTTCCTT+TGG 0.363412 7_3:-64988027 Msa1116930:intron
TAAGATTGGGGTAGGGCTTA+TGG 0.365737 7_3:-64986506 Msa1116930:intron
CGTCCAACGAATTCGGCAAT+AGG 0.365935 7_3:+64988325 None:intergenic
TCAAGAAGCAGAAGAAATTC+AGG 0.367241 7_3:-64987218 Msa1116930:intron
GCCGAATTCGTTGGACGAAA+GGG 0.368904 7_3:-64988319 Msa1116930:CDS
GGAATGAGAGAAACATTGAT+AGG 0.384626 7_3:-64989063 Msa1116930:CDS
GCAATTTCTGCTACGAAGAT+AGG 0.388745 7_3:+64987845 None:intergenic
TATAATATACGCTATCCTTC+AGG 0.395137 7_3:-64986214 Msa1116930:intron
TTGACTTTCGGTGCGATGAT+TGG 0.401877 7_3:-64988364 Msa1116930:CDS
GGGAGACTACTAACAGGATA+TGG 0.407463 7_3:-64987999 Msa1116930:CDS
TTGTAGTTCATGATTGTTAG+TGG 0.407861 7_3:-64987650 Msa1116930:intron
TTATTACTTACCAGCCATCT+AGG 0.415487 7_3:+64987390 None:intergenic
AATGGAAATCAAAGACGAAA+TGG 0.419428 7_3:-64989103 Msa1116930:CDS
ATGGAGGAAGGTAAGCATAA+TGG 0.421437 7_3:-64989084 Msa1116930:CDS
TGGAGGGCTTTAGCTATAAT+CGG 0.425528 7_3:-64987590 Msa1116930:intron
TCATTCCCGAGTCTCCTAGA+TGG 0.426054 7_3:-64987404 Msa1116930:CDS
ACAATGCAGTACTCCTTGTT+TGG 0.430431 7_3:-64988394 Msa1116930:intron
CTTTAAATTTACCAAAAGTA+GGG 0.436278 7_3:+64986050 None:intergenic
TGTAGTTCATGATTGTTAGT+GGG 0.443961 7_3:-64987649 Msa1116930:intron
TCAAGCGCTTTCAGTATTGC+AGG 0.456013 7_3:-64988169 Msa1116930:CDS
CCGAATTCGTTGGACGAAAG+GGG 0.457884 7_3:-64988318 Msa1116930:CDS
GCTTTAAATTTACCAAAAGT+AGG 0.457971 7_3:+64986049 None:intergenic
TGCCGAATTCGTTGGACGAA+AGG 0.459597 7_3:-64988320 Msa1116930:CDS
TCCAGCCTGCTCTATCTATG+AGG 0.461507 7_3:+64986076 None:intergenic
GATATTGGGAGACTACTAAC+AGG 0.466512 7_3:-64988005 Msa1116930:CDS
GTAGGATTTCCTTCTGCGAT+GGG 0.477559 7_3:-64986240 Msa1116930:intron
GGACCTATTGCCGAATTCGT+TGG 0.478055 7_3:-64988328 Msa1116930:CDS
TCTTAATCTGTCTTTGGAAG+AGG 0.482614 7_3:-64988801 Msa1116930:intron
GAATGAGAGAAACATTGATA+GGG 0.483468 7_3:-64989062 Msa1116930:CDS
TAAGAGTATCATACATGAAG+TGG 0.510384 7_3:+64985991 None:intergenic
TCCCGAGTCTCCTAGATGGC+TGG 0.521040 7_3:-64987400 Msa1116930:intron
CTACTAACAGGATATGGAAT+GGG 0.523406 7_3:-64987993 Msa1116930:CDS
CAGATTGTGATCACAGGTGT+TGG 0.523824 7_3:-64986105 Msa1116930:CDS
GGTAGGATTTCCTTCTGCGA+TGG 0.524769 7_3:-64986241 Msa1116930:intron
GTAGTTCATGATTGTTAGTG+GGG 0.526444 7_3:-64987648 Msa1116930:intron
ACAAAGATCATCATTATCCA+TGG 0.531059 7_3:-64989011 Msa1116930:CDS
ATTCATGATAAGATTGGGGT+AGG 0.531448 7_3:-64986514 Msa1116930:intron
TGGAACAGTACTTTCATGGA+GGG 0.532101 7_3:-64987606 Msa1116930:CDS
GTGGTGAAATAAAGCATCCA+TGG 0.532679 7_3:+64988994 None:intergenic
TGATTGTTAGTGGGGCATCT+GGG 0.534637 7_3:-64987640 Msa1116930:CDS
CTTTGTTTGCATGAACAAGT+TGG 0.543321 7_3:+64989028 None:intergenic
TTTAAATTTACCAAAAGTAG+GGG 0.548748 7_3:+64986051 None:intergenic
CATCGCACCGAAAGTCAAGA+TGG 0.552889 7_3:+64988369 None:intergenic
CCAGCCTGCTCTATCTATGA+GGG 0.553786 7_3:+64986077 None:intergenic
TACCAGCCATCTAGGAGACT+CGG 0.554524 7_3:+64987398 None:intergenic
CGAATTCGTTGGACGAAAGG+GGG 0.558292 7_3:-64988317 Msa1116930:intron
TTCATGATAAGATTGGGGTA+GGG 0.562152 7_3:-64986513 Msa1116930:intron
GAAGCATTGCAAATACTTCG+TGG 0.564471 7_3:-64987259 Msa1116930:CDS
CTCCTGATAGCATCTTGAGC+TGG 0.565448 7_3:+64988827 None:intergenic
ACCCAAAAGCAACACAGCAG+TGG 0.569549 7_3:+64987434 None:intergenic
ATTATACTCCCCATCGCAGA+AGG 0.571080 7_3:+64986231 None:intergenic
CCCAAAAGCAACACAGCAGT+GGG 0.571533 7_3:+64987435 None:intergenic
CCCTCATAGATAGAGCAGGC+TGG 0.575051 7_3:-64986077 Msa1116930:CDS
ACCAGCCATCTAGGAGACTC+GGG 0.581675 7_3:+64987399 None:intergenic
ACTACTAACAGGATATGGAA+TGG 0.582100 7_3:-64987994 Msa1116930:CDS
ATCAAAGACGAAATGGAGGA+AGG 0.591811 7_3:-64989096 Msa1116930:CDS
GCAGCCCTCATAGATAGAGC+AGG 0.591826 7_3:-64986081 Msa1116930:CDS
TACCTGGTTTAAGGTAGTCA+AGG 0.596293 7_3:+64987802 None:intergenic
TAATGACTGCAGGCAAAGAG+AGG 0.605948 7_3:-64987301 Msa1116930:intron
CAAGCGCTTTCAGTATTGCA+GGG 0.609346 7_3:-64988168 Msa1116930:CDS
AGGACGCGCAAAAGATTCTG+TGG 0.617669 7_3:-64987281 Msa1116930:CDS
AGTCAAGATGGAGCCAAACA+AGG 0.620309 7_3:+64988381 None:intergenic
GGAAATCAAAGACGAAATGG+AGG 0.629598 7_3:-64989100 Msa1116930:CDS
TATGGTCTGCCAGCAATTAG+GGG 0.632288 7_3:-64986488 Msa1116930:CDS
AATGAGAGAAACATTGATAG+GGG 0.634911 7_3:-64989061 Msa1116930:CDS
AGCTCAAGATGCTATCAGGA+GGG 0.635588 7_3:-64988825 Msa1116930:CDS
AGTAGTCTCCCAATATCCAA+AGG 0.640639 7_3:+64988011 None:intergenic
AGCCTTGACTACCTTAAACC+AGG 0.641981 7_3:-64987804 Msa1116930:intron
ATGGTCTGCCAGCAATTAGG+GGG 0.646014 7_3:-64986487 Msa1116930:CDS
CAGCTCAAGATGCTATCAGG+AGG 0.648596 7_3:-64988826 Msa1116930:CDS
TAGGATTTCCTTCTGCGATG+GGG 0.649900 7_3:-64986239 Msa1116930:CDS
TTGGAACAGTACTTTCATGG+AGG 0.660408 7_3:-64987607 Msa1116930:CDS
GCCACAAACTGCAATGAATG+TGG 0.669272 7_3:+64988975 None:intergenic
ATGATTGGTGCAATAACAAG+TGG 0.674569 7_3:-64988349 Msa1116930:CDS
GCGCTTTCAGTATTGCAGGG+TGG 0.686186 7_3:-64988165 Msa1116930:CDS
ATTGCGCCAAAAGAACGCAG+AGG 0.739667 7_3:-64987827 Msa1116930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATAATTAAACATT+TGG + chr7_3:64986798-64986817 None:intergenic 10.0%
!!! AATGTTTAATTATTTCTTTT+TGG - chr7_3:64986798-64986817 Msa1116930:intron 10.0%
!!! TTTTAAAACATGATTTAATT+TGG + chr7_3:64988723-64988742 None:intergenic 10.0%
!! TGATGAATTAAAAATTGTTT+AGG + chr7_3:64986357-64986376 None:intergenic 15.0%
!! AAGAAAATTACATTAAATCA+AGG + chr7_3:64986609-64986628 None:intergenic 15.0%
!! TATAAGAGGTAAAAAAAAAA+AGG + chr7_3:64986999-64987018 None:intergenic 15.0%
!! TTTACCTCTTATATATATAT+AGG - chr7_3:64987006-64987025 Msa1116930:intron 15.0%
!! TTACCTCTTATATATATATA+GGG - chr7_3:64987007-64987026 Msa1116930:intron 15.0%
!! ACCTTACATTTATATATATA+AGG - chr7_3:64987178-64987197 Msa1116930:intron 15.0%
!! ACCTTATATATATAAATGTA+AGG + chr7_3:64987182-64987201 None:intergenic 15.0%
!!! AAATTATCCTTATTTACTAT+TGG + chr7_3:64988151-64988170 None:intergenic 15.0%
!! AATAGTAAATAAGGATAATT+TGG - chr7_3:64988150-64988169 Msa1116930:CDS 15.0%
!!! ACAAATATGAAAATTTTGAT+TGG + chr7_3:64988455-64988474 None:intergenic 15.0%
!!! TTTATTTTGTTTTGGTTTAT+TGG - chr7_3:64988773-64988792 Msa1116930:intron 15.0%
!! TTAAATTAACCAATAATTCT+TGG - chr7_3:64988866-64988885 Msa1116930:intron 15.0%
!!! ATTAAATTTTCAATAGCTAC+TGG + chr7_3:64986277-64986296 None:intergenic 20.0%
!! AATTTAATTACATAACCCTT+TGG - chr7_3:64986294-64986313 Msa1116930:intron 20.0%
!! TAATTTCAGGAAAATTATGA+TGG - chr7_3:64986754-64986773 Msa1116930:intron 20.0%
!!! GTTTAATTATTTCTTTTTGG+AGG - chr7_3:64986801-64986820 Msa1116930:intron 20.0%
!! ATTCAAGGTAAATAAAAAGT+TGG - chr7_3:64986825-64986844 Msa1116930:intron 20.0%
!! ATACCCTATATATATATAAG+AGG + chr7_3:64987013-64987032 None:intergenic 20.0%
!! AATCATTTCATTGAAAAACT+AGG + chr7_3:64987109-64987128 None:intergenic 20.0%
!! AAGTTATCAACTTATTATCA+TGG + chr7_3:64987301-64987320 None:intergenic 20.0%
!! ATCTAAATCAATATGCAATA+AGG - chr7_3:64987331-64987350 Msa1116930:intron 20.0%
!!! AAATTTATATTTTCTCCGTA+TGG + chr7_3:64987528-64987547 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr7_3:64988064-64988083 None:intergenic 20.0%
!!! TGGTTTTAAAAGTAATACAT+TGG + chr7_3:64988127-64988146 None:intergenic 20.0%
!!! ATATTAGTTCGTTTTCTTTA+AGG - chr7_3:64988357-64988376 Msa1116930:CDS 20.0%
!!! CTCAGATTTTTATTTTGTTT+TGG - chr7_3:64988765-64988784 Msa1116930:intron 20.0%
!! ATTTAAAAATAAGAACCTGA+AGG + chr7_3:64988852-64988871 None:intergenic 20.0%
!! ATCTGTGAAAATAAAAATCA+TGG + chr7_3:64988928-64988947 None:intergenic 20.0%
!! TTTAAATTTACCAAAAGTAG+GGG + chr7_3:64989000-64989019 None:intergenic 20.0%
!! CTTTAAATTTACCAAAAGTA+GGG + chr7_3:64989001-64989020 None:intergenic 20.0%
!!! ATACTCTTATTGTTATTTCT+TGG - chr7_3:64989071-64989090 Msa1116930:CDS 20.0%
!!! TTATTTTTGTTTTTCCAGAC+TGG - chr7_3:64986188-64986207 Msa1116930:intron 25.0%
!! AAAATTGTTTAGGACCAAAT+TGG + chr7_3:64986347-64986366 None:intergenic 25.0%
! TGCAAATTGCTTAATAAACT+AGG + chr7_3:64986387-64986406 None:intergenic 25.0%
! GAAAATTATGATGGTTGATT+TGG - chr7_3:64986763-64986782 Msa1116930:intron 25.0%
! GAGGTAAAAAAAAAAAGGTT+CGG + chr7_3:64986994-64987013 None:intergenic 25.0%
! ACTTAAAACGGCATTATATT+TGG + chr7_3:64987931-64987950 None:intergenic 25.0%
!!! AATATAATGCCGTTTTAAGT+TGG - chr7_3:64987931-64987950 Msa1116930:intron 25.0%
! AAAGATACACCAACTTAAAA+CGG + chr7_3:64987943-64987962 None:intergenic 25.0%
! AAACCAACCAATAGTAAATA+AGG - chr7_3:64988141-64988160 Msa1116930:intron 25.0%
!! TATCCTTATTTACTATTGGT+TGG + chr7_3:64988147-64988166 None:intergenic 25.0%
! AATGATTAAGAAAAAGAGAG+TGG + chr7_3:64988184-64988203 None:intergenic 25.0%
! AAACGAACTAATATCAAAAG+TGG + chr7_3:64988351-64988370 None:intergenic 25.0%
! CTTAATACAACAATATGAGA+AGG + chr7_3:64988415-64988434 None:intergenic 25.0%
! TGATCTATTCATGATAAGAT+TGG - chr7_3:64988528-64988547 Msa1116930:intron 25.0%
! GATCTATTCATGATAAGATT+GGG - chr7_3:64988529-64988548 Msa1116930:intron 25.0%
! ATCTATTCATGATAAGATTG+GGG - chr7_3:64988530-64988549 Msa1116930:intron 25.0%
!! TGATATTCAAGAAAGTATGA+TGG + chr7_3:64988677-64988696 None:intergenic 25.0%
!! TCAGATTTTCCAAGAATTAT+TGG + chr7_3:64988878-64988897 None:intergenic 25.0%
! AATAAAAATCATGGTTGAGT+TGG + chr7_3:64988919-64988938 None:intergenic 25.0%
!! GCTTTAAATTTACCAAAAGT+AGG + chr7_3:64989002-64989021 None:intergenic 25.0%
GAATGAGAGAAACATTGATA+GGG - chr7_3:64985986-64986005 Msa1116930:exon 30.0%
AATGAGAGAAACATTGATAG+GGG - chr7_3:64985987-64986006 Msa1116930:exon 30.0%
ACAAAGATCATCATTATCCA+TGG - chr7_3:64986037-64986056 Msa1116930:CDS 30.0%
TTATTCTCTGTGGTTACATT+AGG + chr7_3:64986320-64986339 None:intergenic 30.0%
! AATTGGTAGTTTATTCTCTG+TGG + chr7_3:64986330-64986349 None:intergenic 30.0%
CAGAGAATAAACTACCAATT+TGG - chr7_3:64986330-64986349 Msa1116930:intron 30.0%
!!! TTTCTTTTTGGAGGTATTCA+AGG - chr7_3:64986810-64986829 Msa1116930:intron 30.0%
!!! GCTTGTTATTTACTTTTCTG+AGG - chr7_3:64986905-64986924 Msa1116930:intron 30.0%
TATATAGGGTATAGTTCCTT+TGG - chr7_3:64987021-64987040 Msa1116930:intron 30.0%
GTATAGTTCCTTTGGATATT+GGG - chr7_3:64987029-64987048 Msa1116930:intron 30.0%
!!! AATGGGAGTTTTTTCATTTG+TGG - chr7_3:64987072-64987091 Msa1116930:intron 30.0%
CATATGCAAGTGTCTTAAAA+TGG + chr7_3:64987141-64987160 None:intergenic 30.0%
TTGTAGTTCATGATTGTTAG+TGG - chr7_3:64987398-64987417 Msa1116930:intron 30.0%
TGTAGTTCATGATTGTTAGT+GGG - chr7_3:64987399-64987418 Msa1116930:intron 30.0%
TAATTGGAACAGTACTTTCA+TGG - chr7_3:64987438-64987457 Msa1116930:CDS 30.0%
AGTAGTTATATAATCCTGTG+TGG + chr7_3:64987971-64987990 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr7_3:64988232-64988251 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr7_3:64988233-64988252 Msa1116930:intron 30.0%
AATACAACAATATGAGAAGG+TGG + chr7_3:64988412-64988431 None:intergenic 30.0%
! GGTTTATTGGTGCATTTTTA+TGG - chr7_3:64988786-64988805 Msa1116930:intron 30.0%
! TATTGGTGCATTTTTATGGT+AGG - chr7_3:64988790-64988809 Msa1116930:intron 30.0%
TATAATATACGCTATCCTTC+AGG - chr7_3:64988834-64988853 Msa1116930:CDS 30.0%
!! TAAGAGTATCATACATGAAG+TGG + chr7_3:64989060-64989079 None:intergenic 30.0%
!! GTTATTTCTTGGTTTCGATT+AGG - chr7_3:64989082-64989101 Msa1116930:CDS 30.0%
GGAATGAGAGAAACATTGAT+AGG - chr7_3:64985985-64986004 Msa1116930:exon 35.0%
! CTTTGTTTGCATGAACAAGT+TGG + chr7_3:64986023-64986042 None:intergenic 35.0%
GTTTGTGGCTCTTATGAATT+TGG - chr7_3:64986087-64986106 Msa1116930:CDS 35.0%
AGAGAAGTAAAGACTTACAC+AGG + chr7_3:64986115-64986134 None:intergenic 35.0%
! TCTTAATCTGTCTTTGGAAG+AGG - chr7_3:64986247-64986266 Msa1116930:intron 35.0%
! ATTGACAGCACAACTTTTAG+TGG - chr7_3:64986498-64986517 Msa1116930:CDS 35.0%
ATAACGTATTTGATCAGTGC+TGG - chr7_3:64986574-64986593 Msa1116930:intron 35.0%
ATGATTGGTGCAATAACAAG+TGG - chr7_3:64986699-64986718 Msa1116930:intron 35.0%
!! TGGTTTTGCAACATATATGC+AGG - chr7_3:64986845-64986864 Msa1116930:intron 35.0%
! AAAAAGGTTCGGTTAATCCT+TGG + chr7_3:64986983-64987002 None:intergenic 35.0%
GGTATAGTTCCTTTGGATAT+TGG - chr7_3:64987028-64987047 Msa1116930:intron 35.0%
ACTACTAACAGGATATGGAA+TGG - chr7_3:64987054-64987073 Msa1116930:intron 35.0%
CTACTAACAGGATATGGAAT+GGG - chr7_3:64987055-64987074 Msa1116930:intron 35.0%
!!! GGAGTTTTTTCATTTGTGGT+TGG - chr7_3:64987076-64987095 Msa1116930:intron 35.0%
GCAAAAACATACCTGGTTTA+AGG + chr7_3:64987258-64987277 None:intergenic 35.0%
GTAGTTCATGATTGTTAGTG+GGG - chr7_3:64987400-64987419 Msa1116930:intron 35.0%
TTATTACTTACCAGCCATCT+AGG + chr7_3:64987661-64987680 None:intergenic 35.0%
TCAAGAAGCAGAAGAAATTC+AGG - chr7_3:64987830-64987849 Msa1116930:CDS 35.0%
! AGGTTAACATGTGTTATTGC+TGG - chr7_3:64987850-64987869 Msa1116930:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_3:64987998-64988017 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr7_3:64988098-64988117 None:intergenic 35.0%
! GTTGTGTGCAGAGTATTAAT+TGG + chr7_3:64988102-64988121 None:intergenic 35.0%
TGAAATAAATCCAGCCCATT+TGG + chr7_3:64988287-64988306 None:intergenic 35.0%
!!! TTTTCTTTAAGGCTTGTGTG+TGG - chr7_3:64988368-64988387 Msa1116930:CDS 35.0%
ATTCATGATAAGATTGGGGT+AGG - chr7_3:64988534-64988553 Msa1116930:intron 35.0%
TTCATGATAAGATTGGGGTA+GGG - chr7_3:64988535-64988554 Msa1116930:intron 35.0%
!! AGCAGTATTTTTGATCTAGC+AGG - chr7_3:64988609-64988628 Msa1116930:intron 35.0%
AAAATCTGAGTGCTTCATGA+AGG + chr7_3:64988755-64988774 None:intergenic 35.0%
!! AATCATGGTTGAGTTGGATT+CGG + chr7_3:64988913-64988932 None:intergenic 35.0%
! TTTTCACAGATTGTGATCAC+AGG - chr7_3:64988937-64988956 Msa1116930:intron 35.0%
GGAAATCAAAGACGAAATGG+AGG - chr7_3:64985948-64985967 Msa1116930:three_prime_UTR 40.0%
ATCAAAGACGAAATGGAGGA+AGG - chr7_3:64985952-64985971 Msa1116930:three_prime_UTR 40.0%
ATGGAGGAAGGTAAGCATAA+TGG - chr7_3:64985964-64985983 Msa1116930:three_prime_UTR 40.0%
! GTGGTGAAATAAAGCATCCA+TGG + chr7_3:64986057-64986076 None:intergenic 40.0%
ACCACATTCATTGCAGTTTG+TGG - chr7_3:64986072-64986091 Msa1116930:CDS 40.0%
GAGGGATCTTAATCTGTCTT+TGG - chr7_3:64986241-64986260 Msa1116930:intron 40.0%
TGTGGTTACATTAGGCCAAA+GGG + chr7_3:64986312-64986331 None:intergenic 40.0%
ACAATGCAGTACTCCTTGTT+TGG - chr7_3:64986654-64986673 Msa1116930:intron 40.0%
! TTTGGCTCCATCTTGACTTT+CGG - chr7_3:64986672-64986691 Msa1116930:intron 40.0%
TAACTCATAACCGTTCTCCA+AGG - chr7_3:64986963-64986982 Msa1116930:intron 40.0%
TTCGGTTAATCCTTGGAGAA+CGG + chr7_3:64986976-64986995 None:intergenic 40.0%
AGTAGTCTCCCAATATCCAA+AGG + chr7_3:64987040-64987059 None:intergenic 40.0%
GATATTGGGAGACTACTAAC+AGG - chr7_3:64987043-64987062 Msa1116930:intron 40.0%
GCAATTTCTGCTACGAAGAT+AGG + chr7_3:64987206-64987225 None:intergenic 40.0%
! TACCTGGTTTAAGGTAGTCA+AGG + chr7_3:64987249-64987268 None:intergenic 40.0%
ACGTGTAGCAAAAACATACC+TGG + chr7_3:64987265-64987284 None:intergenic 40.0%
GCATCTGGGTCATTCATAAT+TGG - chr7_3:64987422-64987441 Msa1116930:CDS 40.0%
TTGGAACAGTACTTTCATGG+AGG - chr7_3:64987441-64987460 Msa1116930:CDS 40.0%
TGGAACAGTACTTTCATGGA+GGG - chr7_3:64987442-64987461 Msa1116930:CDS 40.0%
! TGGAGGGCTTTAGCTATAAT+CGG - chr7_3:64987458-64987477 Msa1116930:intron 40.0%
CCACTAAGAAGAAGACCATA+CGG - chr7_3:64987510-64987529 Msa1116930:intron 40.0%
TGATAAGTGTCTGCAATTGC+AGG - chr7_3:64987583-64987602 Msa1116930:intron 40.0%
ACTGACCAAATAATGACTGC+AGG - chr7_3:64987737-64987756 Msa1116930:intron 40.0%
CTTTGCCTGCAGTCATTATT+TGG + chr7_3:64987745-64987764 None:intergenic 40.0%
!! GAAGCATTGCAAATACTTCG+TGG - chr7_3:64987789-64987808 Msa1116930:intron 40.0%
! ATTTTTGTGACCTTGCCTTC+AGG - chr7_3:64987877-64987896 Msa1116930:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_3:64988237-64988256 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr7_3:64988099-64988118 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr7_3:64988237-64988256 Msa1116930:intron 40.0%
AAGATATTTGCGCTCACTCA+CGG - chr7_3:64988310-64988329 Msa1116930:intron 40.0%
GTCTTAACTCTGTACTTGCT+TGG + chr7_3:64988491-64988510 None:intergenic 40.0%
TTATGGTCTGCCAGCAATTA+GGG - chr7_3:64988559-64988578 Msa1116930:intron 40.0%
!! ATCATGGTTGAGTTGGATTC+GGG + chr7_3:64988912-64988931 None:intergenic 40.0%
GCCACAAACTGCAATGAATG+TGG + chr7_3:64986076-64986095 None:intergenic 45.0%
CTGGAGATGAATATCCAGTC+TGG + chr7_3:64986205-64986224 None:intergenic 45.0%
AGCTCAAGATGCTATCAGGA+GGG - chr7_3:64986223-64986242 Msa1116930:CDS 45.0%
CTGTGGTTACATTAGGCCAA+AGG + chr7_3:64986313-64986332 None:intergenic 45.0%
AGTCAAGATGGAGCCAAACA+AGG + chr7_3:64986670-64986689 None:intergenic 45.0%
! TTGACTTTCGGTGCGATGAT+TGG - chr7_3:64986684-64986703 Msa1116930:intron 45.0%
TCAAGCGCTTTCAGTATTGC+AGG - chr7_3:64986879-64986898 Msa1116930:intron 45.0%
CAAGCGCTTTCAGTATTGCA+GGG - chr7_3:64986880-64986899 Msa1116930:intron 45.0%
GGGAGACTACTAACAGGATA+TGG - chr7_3:64987049-64987068 Msa1116930:intron 45.0%
AGCCTTGACTACCTTAAACC+AGG - chr7_3:64987244-64987263 Msa1116930:CDS 45.0%
! ATGATTGTTAGTGGGGCATC+TGG - chr7_3:64987407-64987426 Msa1116930:CDS 45.0%
! TGATTGTTAGTGGGGCATCT+GGG - chr7_3:64987408-64987427 Msa1116930:CDS 45.0%
! GGGCTTTAGCTATAATCGGT+CGG - chr7_3:64987462-64987481 Msa1116930:intron 45.0%
CCGTATGGTCTTCTTCTTAG+TGG + chr7_3:64987513-64987532 None:intergenic 45.0%
TAATGACTGCAGGCAAAGAG+AGG - chr7_3:64987747-64987766 Msa1116930:intron 45.0%
ACATTGTGCATGAAGCCTGA+AGG + chr7_3:64987895-64987914 None:intergenic 45.0%
TGTATCTTTCTCTGCCACAC+AGG - chr7_3:64987954-64987973 Msa1116930:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_3:64988236-64988255 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr7_3:64988236-64988255 Msa1116930:intron 45.0%
ACGGAGGGAGTAGTTTAGAA+CGG - chr7_3:64988252-64988271 Msa1116930:intron 45.0%
AACGGCTCGCAAAACCAAAT+GGG - chr7_3:64988270-64988289 Msa1116930:intron 45.0%
TAAGATTGGGGTAGGGCTTA+TGG - chr7_3:64988542-64988561 Msa1116930:intron 45.0%
CTTATGGTCTGCCAGCAATT+AGG - chr7_3:64988558-64988577 Msa1116930:intron 45.0%
TATGGTCTGCCAGCAATTAG+GGG - chr7_3:64988560-64988579 Msa1116930:intron 45.0%
!! CATTGATTCCCCCTAATTGC+TGG + chr7_3:64988572-64988591 None:intergenic 45.0%
CAGCAATTAGGGGGAATCAA+TGG - chr7_3:64988570-64988589 Msa1116930:intron 45.0%
GTAGGATTTCCTTCTGCGAT+GGG - chr7_3:64988808-64988827 Msa1116930:CDS 45.0%
TAGGATTTCCTTCTGCGATG+GGG - chr7_3:64988809-64988828 Msa1116930:CDS 45.0%
ATTATACTCCCCATCGCAGA+AGG + chr7_3:64988820-64988839 None:intergenic 45.0%
!! TCATGGTTGAGTTGGATTCG+GGG + chr7_3:64988911-64988930 None:intergenic 45.0%
CAGATTGTGATCACAGGTGT+TGG - chr7_3:64988943-64988962 Msa1116930:intron 45.0%
CTCCAGCTCAAGATGCTATC+AGG - chr7_3:64986219-64986238 Msa1116930:CDS 50.0%
CTCCTGATAGCATCTTGAGC+TGG + chr7_3:64986224-64986243 None:intergenic 50.0%
CAGCTCAAGATGCTATCAGG+AGG - chr7_3:64986222-64986241 Msa1116930:CDS 50.0%
CATCGCACCGAAAGTCAAGA+TGG + chr7_3:64986682-64986701 None:intergenic 50.0%
GGACCTATTGCCGAATTCGT+TGG - chr7_3:64986720-64986739 Msa1116930:intron 50.0%
CGTCCAACGAATTCGGCAAT+AGG + chr7_3:64986726-64986745 None:intergenic 50.0%
TGCCGAATTCGTTGGACGAA+AGG - chr7_3:64986728-64986747 Msa1116930:intron 50.0%
GCCGAATTCGTTGGACGAAA+GGG - chr7_3:64986729-64986748 Msa1116930:intron 50.0%
CCCCTTTCGTCCAACGAATT+CGG + chr7_3:64986733-64986752 None:intergenic 50.0%
CCGAATTCGTTGGACGAAAG+GGG - chr7_3:64986730-64986749 Msa1116930:intron 50.0%
CGAATTCGTTGGACGAAAGG+GGG - chr7_3:64986731-64986750 Msa1116930:intron 50.0%
GGACGAAAGGGGGTAATTTC+AGG - chr7_3:64986741-64986760 Msa1116930:intron 50.0%
ATTGCGCCAAAAGAACGCAG+AGG - chr7_3:64987221-64987240 Msa1116930:CDS 50.0%
! AAGGCTCCTCTGCGTTCTTT+TGG + chr7_3:64987230-64987249 None:intergenic 50.0%
GCAACACAGCAGTGGGAATA+AGG + chr7_3:64987609-64987628 None:intergenic 50.0%
!!! TCCCACTGCTGTGTTGCTTT+TGG - chr7_3:64987612-64987631 Msa1116930:CDS 50.0%
CCCAAAAGCAACACAGCAGT+GGG + chr7_3:64987616-64987635 None:intergenic 50.0%
!!! CCCACTGCTGTGTTGCTTTT+GGG - chr7_3:64987613-64987632 Msa1116930:CDS 50.0%
ACCCAAAAGCAACACAGCAG+TGG + chr7_3:64987617-64987636 None:intergenic 50.0%
TCATTCCCGAGTCTCCTAGA+TGG - chr7_3:64987644-64987663 Msa1116930:CDS 50.0%
TACCAGCCATCTAGGAGACT+CGG + chr7_3:64987653-64987672 None:intergenic 50.0%
AGGACGCGCAAAAGATTCTG+TGG - chr7_3:64987767-64987786 Msa1116930:intron 50.0%
GAACGGCTCGCAAAACCAAA+TGG - chr7_3:64988269-64988288 Msa1116930:intron 50.0%
TATTTGCGCTCACTCACGGT+AGG - chr7_3:64988314-64988333 Msa1116930:intron 50.0%
ATGGTCTGCCAGCAATTAGG+GGG - chr7_3:64988561-64988580 Msa1116930:intron 50.0%
GGTAGGATTTCCTTCTGCGA+TGG - chr7_3:64988807-64988826 Msa1116930:CDS 50.0%
!! CATGGTTGAGTTGGATTCGG+GGG + chr7_3:64988910-64988929 None:intergenic 50.0%
CCAGCCTGCTCTATCTATGA+GGG + chr7_3:64988974-64988993 None:intergenic 50.0%
TCCAGCCTGCTCTATCTATG+AGG + chr7_3:64988975-64988994 None:intergenic 50.0%
GCGCTTTCAGTATTGCAGGG+TGG - chr7_3:64986883-64986902 Msa1116930:intron 55.0%
ACCAGCCATCTAGGAGACTC+GGG + chr7_3:64987652-64987671 None:intergenic 55.0%
GTGCATGAAGCCTGAAGGCA+AGG + chr7_3:64987890-64987909 None:intergenic 55.0%
GCTCGCAAAACCAAATGGGC+TGG - chr7_3:64988274-64988293 Msa1116930:intron 55.0%
GCAGCCCTCATAGATAGAGC+AGG - chr7_3:64988967-64988986 Msa1116930:CDS 55.0%
CCCTCATAGATAGAGCAGGC+TGG - chr7_3:64988971-64988990 Msa1116930:CDS 55.0%
! AGGCTGGAAGCCCCTACTTT+TGG - chr7_3:64988987-64989006 Msa1116930:CDS 55.0%
TCCCGAGTCTCCTAGATGGC+TGG - chr7_3:64987648-64987667 Msa1116930:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64985946 64989124 64985946 ID=Msa1116930;Name=Msa1116930
chr7_3 mRNA 64985946 64989124 64985946 ID=Msa1116930-mRNA-1;Parent=Msa1116930;Name=Msa1116930-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.81|0.75|1|1|1|12|53|334
chr7_3 exon 64985946 64986124 64985946 ID=Msa1116930-mRNA-1:exon:15404;Parent=Msa1116930-mRNA-1
chr7_3 exon 64986215 64986258 64986215 ID=Msa1116930-mRNA-1:exon:15403;Parent=Msa1116930-mRNA-1
chr7_3 exon 64986440 64986524 64986440 ID=Msa1116930-mRNA-1:exon:15402;Parent=Msa1116930-mRNA-1
chr7_3 exon 64987219 64987311 64987219 ID=Msa1116930-mRNA-1:exon:15401;Parent=Msa1116930-mRNA-1
chr7_3 exon 64987401 64987465 64987401 ID=Msa1116930-mRNA-1:exon:15400;Parent=Msa1116930-mRNA-1
chr7_3 exon 64987591 64987666 64987591 ID=Msa1116930-mRNA-1:exon:15399;Parent=Msa1116930-mRNA-1
chr7_3 exon 64987805 64987870 64987805 ID=Msa1116930-mRNA-1:exon:15398;Parent=Msa1116930-mRNA-1
chr7_3 exon 64987977 64988042 64987977 ID=Msa1116930-mRNA-1:exon:15397;Parent=Msa1116930-mRNA-1
chr7_3 exon 64988144 64988203 64988144 ID=Msa1116930-mRNA-1:exon:15396;Parent=Msa1116930-mRNA-1
chr7_3 exon 64988318 64988407 64988318 ID=Msa1116930-mRNA-1:exon:15395;Parent=Msa1116930-mRNA-1
chr7_3 exon 64988802 64988864 64988802 ID=Msa1116930-mRNA-1:exon:15394;Parent=Msa1116930-mRNA-1
chr7_3 exon 64988954 64989124 64988954 ID=Msa1116930-mRNA-1:exon:15393;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64988954 64989124 64988954 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64988802 64988864 64988802 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64988318 64988407 64988318 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64988144 64988203 64988144 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64987977 64988042 64987977 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64987805 64987870 64987805 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64987591 64987666 64987591 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64987401 64987465 64987401 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64987219 64987311 64987219 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64986440 64986524 64986440 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64986215 64986258 64986215 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 CDS 64985999 64986124 64985999 ID=Msa1116930-mRNA-1:cds;Parent=Msa1116930-mRNA-1
chr7_3 three_prime_UTR 64985946 64985998 64985946 ID=Msa1116930-mRNA-1:three_prime_utr;Parent=Msa1116930-mRNA-1
Gene Sequence

>Msa1116930

ATGGAAATCAAAGACGAAATGGAGGAAGGTAAGCATAATGGAATGAGAGAAACATTGATAGGGGAACACAAAAACCAACTTGTTCATGCAAACAAAGATCATCATTATCCATGGATGCTTTATTTCACCACATTCATTGCAGTTTGTGGCTCTTATGAATTTGGTGCCTGTACTGGATATTCATCTCCAGCTCAAGATGCTATCAGGAGGGATCTTAATCTGTCTTTGGAAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTCGGTGCGATGATTGGTGCAATAACAAGTGGACCTATTGCCGAATTCGTTGGACGAAAGGGGGCAATGAGAGTGTCAAGCGCTTTCAGTATTGCAGGGTGGCTTGTTATTTACTTTTCTGAGGGTATAGTTCCTTTGGATATTGGGAGACTACTAACAGGATATGGAATGGGAGTTTTTTCATTTGTGGTTCCTATCTTCGTAGCAGAAATTGCGCCAAAAGAACGCAGAGGAGCCTTGACTACCTTAAACCAGTTCATGATTGTTAGTGGGGCATCTGGGTCATTCATAATTGGAACAGTACTTTCATGGAGGGCTTTAGCTATAATCGGCCTTATTCCCACTGCTGTGTTGCTTTTGGGTCTGTTCTTCATTCCCGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGCGCAAAAGATTCTGTGGAAGCATTGCAAATACTTCGTGGAAAAGATGCTGATGTATCTCAAGAAGCAGAAGAAATTCAGATTGGGGTAGGGCTTATGGTCTGCCAGCAATTAGGGGGAATCAATGGTGTTTGCTTTTATACAAGCAGTATTTTTGATCTAGCAGGATTTCCTTCTGCGATGGGGAGTATAATATACGCTATCCTTCAGATTGTGATCACAGGTGTTGGAGCAGCCCTCATAGATAGAGCAGGCTGGAAGCCCCTACTTTTGGTAAATTTAAAGCTCAAACAGCTTATTTTTATTTTCATTTGCTTATCTCCACTTCATGTATGA

Protein sequence

>Msa1116930

MEIKDEMEEGKHNGMRETLIGEHKNQLVHANKDHHYPWMLYFTTFIAVCGSYEFGACTGYSSPAQDAIRRDLNLSLEEYSLFGSILTFGAMIGAITSGPIAEFVGRKGAMRVSSAFSIAGWLVIYFSEGIVPLDIGRLLTGYGMGVFSFVVPIFVAEIAPKERRGALTTLNQFMIVSGASGSFIIGTVLSWRALAIIGLIPTAVLLLGLFFIPESPRWLAKRGRAKDSVEALQILRGKDADVSQEAEEIQIGVGLMVCQQLGGINGVCFYTSSIFDLAGFPSAMGSIIYAILQIVITGVGAALIDRAGWKPLLLVNLKLKQLIFIFICLSPLHV*