AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 145 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATAGTAATTAGTATTT+TGG 0.133591 3_1:+66732467 Msa0369470:five_prime_UTR
TACAGTGTTGGTTTCAGTTT+TGG 0.193121 3_1:-66732656 None:intergenic
TCAATAAGCACGGTTGTTAT+TGG 0.197219 3_1:+66736518 Msa0369470:five_prime_UTR
TCAGAAACTGCAGAAGAAAA+TGG 0.199159 3_1:+66738869 Msa0369470:CDS
TTGCTTGAAGATTTGTAAAT+TGG 0.221284 3_1:+66737756 Msa0369470:five_prime_UTR
ATGTTAGCACCATTTGAATT+TGG 0.236044 3_1:-66737891 None:intergenic
CGGAAATTGAACAGATTTCT+TGG 0.243466 3_1:+66737725 Msa0369470:five_prime_UTR
ATGCTACAATTGAGTTCTAT+TGG 0.252458 3_1:+66736416 Msa0369470:five_prime_UTR
CTTGAACTTAAAGCAGTCTT+TGG 0.273442 3_1:+66738000 Msa0369470:five_prime_UTR
ATCAAAGGTTTCCATAGATT+TGG 0.274989 3_1:-66735733 None:intergenic
TTGATGTATGTGCGTCTTTA+CGG 0.277909 3_1:-66737555 None:intergenic
CAATTGAAGAACCCTCATAT+TGG 0.278107 3_1:+66737431 Msa0369470:five_prime_UTR
GCAGGGTTAGCTAGTTGTTC+TGG 0.284111 3_1:-66737607 None:intergenic
ACCTATCTTTGGTGGGTAAC+TGG 0.289892 3_1:+66736568 Msa0369470:five_prime_UTR
TTGGAAAGGCGCAGACATTT+TGG 0.292970 3_1:+66736537 Msa0369470:five_prime_UTR
CGTTCAAGAGGTGGAGAAAA+AGG 0.299849 3_1:+66732711 Msa0369470:five_prime_UTR
TTCCATAGATTTGGCATGTT+GGG 0.300255 3_1:-66735724 None:intergenic
AAGAGCATAATGCAAGTAAT+TGG 0.310729 3_1:+66737469 Msa0369470:five_prime_UTR
TGGTTAGAAAATAAGCTATA+GGG 0.315805 3_1:+66737817 Msa0369470:five_prime_UTR
AATTGAAGAACCCTCATATT+GGG 0.319038 3_1:+66737432 Msa0369470:five_prime_UTR
GTCAACTGTGGCTGTATATA+AGG 0.323921 3_1:-66732832 None:intergenic
TCCCCAACATGCCAAATCTA+TGG 0.329333 3_1:+66735722 Msa0369470:five_prime_UTR
TTGTTGGGGACTCCCTCAAT+AGG 0.332252 3_1:+66735658 Msa0369470:five_prime_UTR
TGTTGGGGACTCCCTCAATA+GGG 0.339146 3_1:+66735659 Msa0369470:five_prime_UTR
AAAGAGTGTGACTTGTTTAG+TGG 0.353179 3_1:+66732757 Msa0369470:five_prime_UTR
TGGTATTCAACACCTATCTT+TGG 0.355801 3_1:+66736557 Msa0369470:five_prime_UTR
TACCTGGACTTCAAGATACT+TGG 0.367210 3_1:+66737659 Msa0369470:five_prime_UTR
CAATATGAGGGTTCTTCAAT+TGG 0.367795 3_1:-66737430 None:intergenic
AGTGATGTTGAGAAATGTTA+TGG 0.369289 3_1:-66737518 None:intergenic
CCTATGGATGACAGCATTAT+CGG 0.375681 3_1:-66736464 None:intergenic
GAAACATAGTGATGCAAGTT+AGG 0.377895 3_1:+66738029 Msa0369470:exon
CGTGAGGCTGCCACCGCAAC+CGG 0.384300 3_1:-66732891 None:intergenic
TTGGTTAGAAAATAAGCTAT+AGG 0.387389 3_1:+66737816 Msa0369470:five_prime_UTR
GGAAGAGGATGATGTTTGTT+GGG 0.394554 3_1:+66735643 Msa0369470:five_prime_UTR
TGCTACAATTGAGTTCTATT+GGG 0.397733 3_1:+66736417 Msa0369470:five_prime_UTR
AAGTGTTTCTAGCATTAAAC+TGG 0.401534 3_1:-66735616 None:intergenic
GCTAGTTGTTCTGGAGTCAA+TGG 0.404956 3_1:-66737598 None:intergenic
TTTGTTCTAAGAAGAGAAGA+AGG 0.408887 3_1:-66732517 None:intergenic
CTATGAAAAGTATGCTTAGA+TGG 0.410597 3_1:+66736780 Msa0369470:five_prime_UTR
GATGTGGACGGAAGAGGAAG+AGG 0.414605 3_1:-66732618 None:intergenic
TTTCAGGCTTGGTTCTTTCA+AGG 0.415091 3_1:+66736706 Msa0369470:intron
GAAGAAGACTCTAGTCTTGT+TGG 0.416282 3_1:-66736822 None:intergenic
CAGAAACTGCAGAAGAAAAT+GGG 0.420181 3_1:+66738870 Msa0369470:CDS
TCAATTTCCGTGTTGTTTCA+AGG 0.421835 3_1:-66737712 None:intergenic
CACCTCTTGAACGGTGTTGT+TGG 0.423545 3_1:-66732701 None:intergenic
ATAGAGTGGGGAGGGGAACC+AGG 0.425851 3_1:+66737382 Msa0369470:five_prime_UTR
CATTATGCTCTTCAATGAAT+CGG 0.432529 3_1:-66737458 None:intergenic
TGTATACACTGGTGTTTACC+TGG 0.440271 3_1:+66737643 Msa0369470:five_prime_UTR
TCATTGTAGCAGTTCCCTCC+TGG 0.441985 3_1:-66737400 None:intergenic
TGAAGAGGATGATGGATAAG+AGG 0.445125 3_1:-66732567 None:intergenic
GATTTGTAAATTGGAAGATA+AGG 0.446298 3_1:+66737765 Msa0369470:five_prime_UTR
CAATTCTATCAGTTACCCTA+TGG 0.456943 3_1:-66736480 None:intergenic
TGAATTTGGCATTCTTAAAG+TGG 0.459978 3_1:-66737877 None:intergenic
AACCGGCGGTACTCTTTATC+CGG 0.462447 3_1:-66732874 None:intergenic
GGGAAGAGGATGATGTTTGT+TGG 0.465024 3_1:+66735642 Msa0369470:five_prime_UTR
ACCAGCATGTCGCCTTCTCA+TGG 0.465345 3_1:+66736845 Msa0369470:five_prime_UTR
TTAAGAATGCCAAATTCAAA+TGG 0.470649 3_1:+66737882 Msa0369470:five_prime_UTR
TGAATCGGATCCCCAATATG+AGG 0.473368 3_1:-66737443 None:intergenic
CCGATAATGCTGTCATCCAT+AGG 0.473397 3_1:+66736464 Msa0369470:five_prime_UTR
ATGTGCGTCTTTACGGTAGT+TGG 0.473437 3_1:-66737548 None:intergenic
AACTGATAGAATTGTAAGAA+AGG 0.479190 3_1:+66736489 Msa0369470:five_prime_UTR
GTTGAAGATGTGGACGGAAG+AGG 0.483808 3_1:-66732624 None:intergenic
GTGACTTGTTTAGTGGAAGG+TGG 0.484839 3_1:+66732764 Msa0369470:five_prime_UTR
AGAGGAAGTCATGGGTGTTG+AGG 0.488080 3_1:-66732600 None:intergenic
GAAAATCTTATGTTGTTCAT+CGG 0.490128 3_1:-66738848 None:intergenic
GCCAGTTACCCACCAAAGAT+AGG 0.490344 3_1:-66736569 None:intergenic
GTTTCAAGGATAAAATAACT+TGG 0.490675 3_1:-66737698 None:intergenic
GAGTTTGATTCAAGAAGAAA+AGG 0.496578 3_1:-66736442 None:intergenic
TATTCAACACCTATCTTTGG+TGG 0.499795 3_1:+66736560 Msa0369470:five_prime_UTR
AGAAAATGGGATCAAGGCAT+TGG 0.500163 3_1:+66738883 Msa0369470:CDS
GCAGGAGTATAGAGTGGGGA+GGG 0.501931 3_1:+66737374 Msa0369470:intron
CACTCAGATTCCTCATACAA+TGG 0.502594 3_1:-66732808 None:intergenic
GGTTAGAAAATAAGCTATAG+GGG 0.507362 3_1:+66737818 Msa0369470:five_prime_UTR
AACGTACAATATCTTCATGT+TGG 0.508341 3_1:-66736593 None:intergenic
ACACATACTGACCCCTATTG+AGG 0.508783 3_1:-66735671 None:intergenic
GTGATGTTGAGAAATGTTAT+GGG 0.509971 3_1:-66737517 None:intergenic
TGCAGAAGAAAATGGGATCA+AGG 0.512347 3_1:+66738877 Msa0369470:CDS
TCCATAGATTTGGCATGTTG+GGG 0.516832 3_1:-66735723 None:intergenic
TTCCAAGTATCTTGAAGTCC+AGG 0.517028 3_1:-66737661 None:intergenic
GAGTGGGGAGGGGAACCAGG+AGG 0.517583 3_1:+66737385 Msa0369470:five_prime_UTR
GTTGACTAGGCCATTGTATG+AGG 0.522730 3_1:+66732798 Msa0369470:five_prime_UTR
CACATACTGACCCCTATTGA+GGG 0.523741 3_1:-66735670 None:intergenic
TTGAATGAGTTTGCCATGCA+TGG 0.524798 3_1:-66732493 None:intergenic
ATAAAGAGTACCGCCGGTTG+CGG 0.529348 3_1:+66732878 Msa0369470:five_prime_UTR
ATACAATCAGAGTAGCTAGC+AGG 0.529439 3_1:-66737625 None:intergenic
TTTCCATAGATTTGGCATGT+TGG 0.529665 3_1:-66735725 None:intergenic
GGAAGAGGAAGAGGAAGTCA+TGG 0.532383 3_1:-66732609 None:intergenic
TAGAAACACTTCGTGGGAAG+AGG 0.532534 3_1:+66735628 Msa0369470:five_prime_UTR
ACTGATAGAATTGTAAGAAA+GGG 0.534005 3_1:+66736490 Msa0369470:five_prime_UTR
TGACTTGTTTAGTGGAAGGT+GGG 0.548503 3_1:+66732765 Msa0369470:five_prime_UTR
GTCATGGGTGTTGAGGATGA+TGG 0.549061 3_1:-66732593 None:intergenic
CGATAATGCTGTCATCCATA+GGG 0.552611 3_1:+66736465 Msa0369470:five_prime_UTR
GGCGGTACTCTTTATCCGGC+CGG 0.553038 3_1:-66732870 None:intergenic
CGTTGAAAAGAGTACAGTGT+TGG 0.555474 3_1:-66732668 None:intergenic
GTTGGGGACTCCCTCAATAG+GGG 0.559822 3_1:+66735660 Msa0369470:five_prime_UTR
TCCATGAGAAGGCGACATGC+TGG 0.560559 3_1:-66736846 None:intergenic
CGGTTGCGGTGGCAGCCTCA+CGG 0.561215 3_1:+66732892 Msa0369470:five_prime_UTR
GAAGAGGATGATGGATAAGA+GGG 0.563005 3_1:-66732566 None:intergenic
GGCCGGATAAAGAGTACCGC+CGG 0.570651 3_1:+66732872 Msa0369470:five_prime_UTR
GAAGACAGTGAGAGAATCAA+AGG 0.572213 3_1:-66735748 None:intergenic
TTGTCTAGAACATGGCCGGC+CGG 0.573776 3_1:+66732855 Msa0369470:five_prime_UTR
GGCAGGAGTATAGAGTGGGG+AGG 0.573799 3_1:+66737373 Msa0369470:intron
TGACTTGTCTAGAACATGGC+CGG 0.574272 3_1:+66732851 Msa0369470:five_prime_UTR
GTTTAGTGGAAGGTGGGTGA+AGG 0.578303 3_1:+66732771 Msa0369470:five_prime_UTR
AAGAGTACCGCCGGTTGCGG+TGG 0.579098 3_1:+66732881 Msa0369470:five_prime_UTR
CATGTTGGGGAATAAGATGA+TGG 0.582684 3_1:-66735710 None:intergenic
GATGGCGGTGAAGAGGATGA+TGG 0.584689 3_1:-66732575 None:intergenic
TACAATCAGAGTAGCTAGCA+GGG 0.585561 3_1:-66737624 None:intergenic
TATACTCACTTTCCATGAGA+AGG 0.587719 3_1:-66736857 None:intergenic
TGAGGATGATGGCGGTGAAG+AGG 0.590325 3_1:-66732582 None:intergenic
GGGTGAAGGATGAGTTGACT+AGG 0.592083 3_1:+66732785 Msa0369470:five_prime_UTR
GTCCAACAACACCGTTCAAG+AGG 0.598897 3_1:+66732699 Msa0369470:five_prime_UTR
GAAGAGGATGATGTTTGTTG+GGG 0.599533 3_1:+66735644 Msa0369470:five_prime_UTR
CAACAACACCGTTCAAGAGG+TGG 0.599644 3_1:+66732702 Msa0369470:five_prime_UTR
AAGCACGGTTGTTATTGGAA+AGG 0.599952 3_1:+66736523 Msa0369470:five_prime_UTR
GGGTGGAGCTGTTGAAGATG+TGG 0.600709 3_1:-66732634 None:intergenic
ATTCAACACCTATCTTTGGT+GGG 0.601235 3_1:+66736561 Msa0369470:five_prime_UTR
AGTGGGGAGGGGAACCAGGA+GGG 0.604795 3_1:+66737386 Msa0369470:five_prime_UTR
AATTGGAAGATAAGGCATGT+GGG 0.604961 3_1:+66737773 Msa0369470:five_prime_UTR
TAATGCTAGAAACACTTCGT+GGG 0.605384 3_1:+66735622 Msa0369470:five_prime_UTR
TTAATGCTAGAAACACTTCG+TGG 0.607752 3_1:+66735621 Msa0369470:five_prime_UTR
TATGAAAAGTATGCTTAGAT+GGG 0.615716 3_1:+66736781 Msa0369470:five_prime_UTR
GGGGAATAAGATGATGGAGA+AGG 0.617250 3_1:-66735704 None:intergenic
TTGTTCTAAGAAGAGAAGAA+GGG 0.618047 3_1:-66732516 None:intergenic
ATTGAAGAACCCTCATATTG+GGG 0.618106 3_1:+66737433 Msa0369470:five_prime_UTR
GAAGAGGAAGAGGAAGTCAT+GGG 0.620114 3_1:-66732608 None:intergenic
CAGTTGACTTGTCTAGAACA+TGG 0.621422 3_1:+66732847 Msa0369470:five_prime_UTR
GAGGCTGCCACCGCAACCGG+CGG 0.622452 3_1:-66732888 None:intergenic
AACAGAGGAAGCCTATCGCA+TGG 0.627890 3_1:+66736757 Msa0369470:five_prime_UTR
AAGGGTTCAATCAATAAGCA+CGG 0.633039 3_1:+66736508 Msa0369470:five_prime_UTR
AAATTGGAAGATAAGGCATG+TGG 0.633886 3_1:+66737772 Msa0369470:five_prime_UTR
GAATCGGATCCCCAATATGA+GGG 0.635986 3_1:-66737442 None:intergenic
TTTGGCAGGAGTATAGAGTG+GGG 0.639163 3_1:+66737370 Msa0369470:intron
CAGGAGTATAGAGTGGGGAG+GGG 0.640006 3_1:+66737375 Msa0369470:intron
GATTGTTGAGATGCAAACAG+AGG 0.642193 3_1:+66736742 Msa0369470:five_prime_UTR
TAGATGGGTGAAAATGAACA+TGG 0.646778 3_1:+66736796 Msa0369470:five_prime_UTR
TCTCACTGTCTTCACAGCCA+AGG 0.647375 3_1:+66735758 Msa0369470:five_prime_UTR
GCTACTCTGATTGTATACAC+TGG 0.654776 3_1:+66737632 Msa0369470:five_prime_UTR
AGTGTGACTTGTTTAGTGGA+AGG 0.659828 3_1:+66732761 Msa0369470:five_prime_UTR
GGAGCTGTTGAAGATGTGGA+CGG 0.704679 3_1:-66732630 None:intergenic
TGTTCTAGACAAGTCAACTG+TGG 0.714914 3_1:-66732844 None:intergenic
TTGGGAAGATCGCAACCGTG+AGG 0.715139 3_1:-66732907 None:intergenic
AAGAGATAAGAAGAGAGACG+AGG 0.725921 3_1:-66732541 None:intergenic
ATGGTGCTAACATATGTACG+TGG 0.739682 3_1:+66737901 Msa0369470:five_prime_UTR
ATGGGTGTTGAGGATGATGG+CGG 0.751697 3_1:-66732590 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAAAGTACTATTATTT+TGG + chr3_1:66737352-66737371 Msa0369470:intron 10.0%
!!! ATTTTGTAATAGTAGTTTAA+TGG + chr3_1:66733151-66733170 Msa0369470:intron 15.0%
!!! ATAAATCTCGAATTTTTTAA+AGG - chr3_1:66733301-66733320 None:intergenic 15.0%
!!! TTGATAAATTTTGTTTTGTT+TGG - chr3_1:66733456-66733475 None:intergenic 15.0%
!!! TTGATAAATTTTGTTTTGTT+TGG - chr3_1:66733456-66733475 None:intergenic 15.0%
!! TCAAAAAATAAGAATGAATT+GGG - chr3_1:66733807-66733826 None:intergenic 15.0%
!!! TATGATAATTGATAATACAA+CGG + chr3_1:66734002-66734021 Msa0369470:intron 15.0%
!!! ACTAAATTATACTTTTAACT+TGG - chr3_1:66734084-66734103 None:intergenic 15.0%
!!! GTTTTGATATTTATTTTTTG+TGG - chr3_1:66734594-66734613 None:intergenic 15.0%
!!! TTTAGACTTAAAATCAATTT+TGG + chr3_1:66735836-66735855 Msa0369470:intron 15.0%
!! AAATAATTTATCGAATATAG+TGG - chr3_1:66736625-66736644 None:intergenic 15.0%
!!! TGTTTTATAATTGAAAAATC+TGG - chr3_1:66736994-66737013 None:intergenic 15.0%
!! CAAGAATTATTCTTAAATAT+TGG - chr3_1:66737067-66737086 None:intergenic 15.0%
!!! TTAAAATGTTTTATTGTTCT+CGG - chr3_1:66737205-66737224 None:intergenic 15.0%
!! ATTTAAACACAAAAAATAGA+TGG + chr3_1:66738369-66738388 Msa0369470:intron 15.0%
!!! TATCAAGTATTAAGATTTTA+GGG - chr3_1:66738413-66738432 None:intergenic 15.0%
!!! TTATCAAGTATTAAGATTTT+AGG - chr3_1:66738414-66738433 None:intergenic 15.0%
!! AAAATCTTAATACTTGATAA+AGG + chr3_1:66738414-66738433 Msa0369470:intron 15.0%
!!! TAATTGAGAATATTACTTTT+TGG + chr3_1:66738495-66738514 Msa0369470:intron 15.0%
!!! TAGCATAGTAATTAGTATTT+TGG + chr3_1:66732467-66732486 Msa0369470:five_prime_UTR 20.0%
!!! AGCATAGTAATTAGTATTTT+GGG + chr3_1:66732468-66732487 Msa0369470:five_prime_UTR 20.0%
!!! TAGTACTATAGTTTTATACA+AGG + chr3_1:66733198-66733217 Msa0369470:intron 20.0%
!! TACAATAGAAATGTTTACAA+TGG + chr3_1:66733523-66733542 Msa0369470:intron 20.0%
!!! ATTAATAATGCCACTAATTT+TGG + chr3_1:66733657-66733676 Msa0369470:intron 20.0%
!! GTCAAAAAATAAGAATGAAT+TGG - chr3_1:66733808-66733827 None:intergenic 20.0%
!!! ACTAGAATAAAGACTTATTT+TGG - chr3_1:66733949-66733968 None:intergenic 20.0%
!! TACAATGAAGAATCATAAAT+TGG + chr3_1:66734402-66734421 Msa0369470:intron 20.0%
!!! ATAAATTGGAATTCTAGTTA+AGG + chr3_1:66734416-66734435 Msa0369470:intron 20.0%
!!! AAAAACTCTTCTTTCTTTTT+CGG + chr3_1:66734465-66734484 Msa0369470:intron 20.0%
!!! TCTTTTTTGACTCAATATAT+TGG - chr3_1:66734550-66734569 None:intergenic 20.0%
!!! TATTGCGCTATTATATTTTT+CGG - chr3_1:66734616-66734635 None:intergenic 20.0%
!! CAATAAAGTTAAAATGTACT+AGG + chr3_1:66735045-66735064 Msa0369470:intron 20.0%
!!! TGTAGTATCAATTTTCTTTA+TGG + chr3_1:66735177-66735196 Msa0369470:intron 20.0%
!!! ATAATAAACTAGCTTTATGT+TGG + chr3_1:66735481-66735500 Msa0369470:intron 20.0%
!!! ATAGACTATTGTATATTTTG+AGG - chr3_1:66736069-66736088 None:intergenic 20.0%
!!! CTAGATATTTTGAAAACTAA+GGG + chr3_1:66736241-66736260 Msa0369470:intron 20.0%
!!! TAGATATTTTGAAAACTAAG+GGG + chr3_1:66736242-66736261 Msa0369470:intron 20.0%
!!! TTTTGTTTCATTTACCATTT+TGG - chr3_1:66736297-66736316 None:intergenic 20.0%
!! ATTTGAGTAGAGATTAATTA+GGG - chr3_1:66736686-66736705 None:intergenic 20.0%
!! AATTTGAGTAGAGATTAATT+AGG - chr3_1:66736687-66736706 None:intergenic 20.0%
!! TATACTATAATTCACAAACT+CGG + chr3_1:66736876-66736895 Msa0369470:intron 20.0%
!!! ATATTTTTAATGCATGAAAG+CGG - chr3_1:66736924-66736943 None:intergenic 20.0%
!! TCATGCATTAAAAATATATG+TGG + chr3_1:66736927-66736946 Msa0369470:intron 20.0%
!!! TTGTTTTATCTTTAATCGAA+CGG - chr3_1:66736953-66736972 None:intergenic 20.0%
!!! AGTTAAAATCTGCATTTTTT+TGG + chr3_1:66737014-66737033 Msa0369470:intron 20.0%
!!! GTTAAAATCTGCATTTTTTT+GGG + chr3_1:66737015-66737034 Msa0369470:intron 20.0%
!!! TTAAAATCTGCATTTTTTTG+GGG + chr3_1:66737016-66737035 Msa0369470:intron 20.0%
!! TAGAAAATTGTGATATTGTA+TGG - chr3_1:66737105-66737124 None:intergenic 20.0%
!!! TAAAATGTTTTATTGTTCTC+GGG - chr3_1:66737204-66737223 None:intergenic 20.0%
!!! TTCTTTTTTCTTTGTTAAGA+AGG + chr3_1:66738057-66738076 Msa0369470:CDS 20.0%
!!! TCTTTTTTCTTTGTTAAGAA+GGG + chr3_1:66738058-66738077 Msa0369470:CDS 20.0%
!! AGTAATATTCTCAATTATGT+TGG - chr3_1:66738492-66738511 None:intergenic 20.0%
!!! AATTATTCTGATACTCTTTT+AGG + chr3_1:66738793-66738812 Msa0369470:intron 20.0%
!! GCATAGTAATTAGTATTTTG+GGG + chr3_1:66732469-66732488 Msa0369470:five_prime_UTR 25.0%
! ACATAAGCATATACTTACTT+GGG - chr3_1:66732928-66732947 None:intergenic 25.0%
! AACATAAGCATATACTTACT+TGG - chr3_1:66732929-66732948 None:intergenic 25.0%
! TTATACAAGGAGCAAAATAT+TGG + chr3_1:66733211-66733230 Msa0369470:intron 25.0%
! TAACAACATTTGATATGTGT+AGG + chr3_1:66733393-66733412 Msa0369470:intron 25.0%
!!! ATAAGCGACTTTGTTTTTTT+AGG + chr3_1:66733572-66733591 Msa0369470:intron 25.0%
!! TCAAACATTTTTATCCTGTA+TGG + chr3_1:66733850-66733869 Msa0369470:intron 25.0%
! TAATGTAGATGTTTATGACT+TGG + chr3_1:66733968-66733987 Msa0369470:intron 25.0%
! AATGTAGATGTTTATGACTT+GGG + chr3_1:66733969-66733988 Msa0369470:intron 25.0%
!! CCTTAAACAACTAAGTTTTT+AGG - chr3_1:66734527-66734546 None:intergenic 25.0%
! CCTAAAAACTTAGTTGTTTA+AGG + chr3_1:66734524-66734543 Msa0369470:intron 25.0%
! TCATTTCCTTTGTAAAATCT+TGG - chr3_1:66734855-66734874 None:intergenic 25.0%
!!! TTTTAACTTTATTGCCCAAT+TGG - chr3_1:66735039-66735058 None:intergenic 25.0%
! ACTTTCTATTACTAGTTGAT+TGG - chr3_1:66735101-66735120 None:intergenic 25.0%
! CAAAATTAGTACTTTCTAGA+AGG - chr3_1:66735448-66735467 None:intergenic 25.0%
!!! CTAGAAAGTACTAATTTTGT+TGG + chr3_1:66735449-66735468 Msa0369470:intron 25.0%
!! AGGATTTTGAATTTCTTCAA+AGG + chr3_1:66735525-66735544 Msa0369470:intron 25.0%
!!! TTTTGCTTTATTCACGATTT+TGG + chr3_1:66735867-66735886 Msa0369470:intron 25.0%
! AACCTCAAAATGTATTAATG+GGG - chr3_1:66735951-66735970 None:intergenic 25.0%
! CAACCTCAAAATGTATTAAT+GGG - chr3_1:66735952-66735971 None:intergenic 25.0%
! TCAACCTCAAAATGTATTAA+TGG - chr3_1:66735953-66735972 None:intergenic 25.0%
! AAAAAGACGTAAATTTGATG+TGG + chr3_1:66736094-66736113 Msa0369470:intron 25.0%
!!! GCTAGATATTTTGAAAACTA+AGG + chr3_1:66736240-66736259 Msa0369470:intron 25.0%
! AAAATGCTTAAATGCAGATT+TGG - chr3_1:66736330-66736349 None:intergenic 25.0%
! TATGGAGAAAAAGAAAGAAA+AGG - chr3_1:66736364-66736383 None:intergenic 25.0%
! AACTGATAGAATTGTAAGAA+AGG + chr3_1:66736489-66736508 Msa0369470:five_prime_UTR 25.0%
! ACTGATAGAATTGTAAGAAA+GGG + chr3_1:66736490-66736509 Msa0369470:five_prime_UTR 25.0%
!!! TTTATCGAATATAGTGGATT+AGG - chr3_1:66736619-66736638 None:intergenic 25.0%
! TTTGAGTAGAGATTAATTAG+GGG - chr3_1:66736685-66736704 None:intergenic 25.0%
!! TAATCTCTACTCAAATTTTC+AGG + chr3_1:66736690-66736709 Msa0369470:intron 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG + chr3_1:66736781-66736800 Msa0369470:five_prime_UTR 25.0%
!!! TATTTTTAATGCATGAAAGC+GGG - chr3_1:66736923-66736942 None:intergenic 25.0%
! TATAATTGAAAAATCTGGAC+TGG - chr3_1:66736989-66737008 None:intergenic 25.0%
!!! AAAATGTTTTATTGTTCTCG+GGG - chr3_1:66737203-66737222 None:intergenic 25.0%
!! ACAAATCATTCTAGAGAATT+CGG + chr3_1:66737227-66737246 Msa0369470:intron 25.0%
! AACAATAAGTATGATGCAAT+TGG - chr3_1:66737333-66737352 None:intergenic 25.0%
!!! TAAAGTACTATTATTTTGGC+AGG + chr3_1:66737356-66737375 Msa0369470:intron 25.0%
! GTTTCAAGGATAAAATAACT+TGG - chr3_1:66737701-66737720 None:intergenic 25.0%
!! ATTTTATCCTTGAAACAACA+CGG + chr3_1:66737705-66737724 Msa0369470:five_prime_UTR 25.0%
! TTGCTTGAAGATTTGTAAAT+TGG + chr3_1:66737756-66737775 Msa0369470:five_prime_UTR 25.0%
! GATTTGTAAATTGGAAGATA+AGG + chr3_1:66737765-66737784 Msa0369470:five_prime_UTR 25.0%
! TTGGTTAGAAAATAAGCTAT+AGG + chr3_1:66737816-66737835 Msa0369470:five_prime_UTR 25.0%
! TGGTTAGAAAATAAGCTATA+GGG + chr3_1:66737817-66737836 Msa0369470:five_prime_UTR 25.0%
! TTAAGAATGCCAAATTCAAA+TGG + chr3_1:66737882-66737901 Msa0369470:five_prime_UTR 25.0%
!!! CTTCATTTTGTTTTAGCTTT+TGG + chr3_1:66737939-66737958 Msa0369470:five_prime_UTR 25.0%
! AGAACTTCATCAACATATTT+CGG - chr3_1:66738576-66738595 None:intergenic 25.0%
!! TAAATCACAACATTTTCTAG+AGG + chr3_1:66738640-66738659 Msa0369470:intron 25.0%
! GAAAATCTTATGTTGTTCAT+CGG - chr3_1:66738851-66738870 None:intergenic 25.0%
!! TTGTTCTAAGAAGAGAAGAA+GGG - chr3_1:66732519-66732538 None:intergenic 30.0%
!! TTTGTTCTAAGAAGAGAAGA+AGG - chr3_1:66732520-66732539 None:intergenic 30.0%
!!! TTTTTTACGGGTCAAGTTAA+CGG + chr3_1:66732976-66732995 Msa0369470:intron 30.0%
TTTACACCGACAATATTGTA+CGG - chr3_1:66733177-66733196 None:intergenic 30.0%
AATGTTTACAATGGCAAACA+AGG + chr3_1:66733532-66733551 Msa0369470:intron 30.0%
! TTTATCTGTTTCTTCTCGAA+TGG + chr3_1:66733599-66733618 Msa0369470:intron 30.0%
! TTATCTGTTTCTTCTCGAAT+GGG + chr3_1:66733600-66733619 Msa0369470:intron 30.0%
GGACCTTACATGAATTAATA+CGG + chr3_1:66733621-66733640 Msa0369470:intron 30.0%
TGTCCGTATTAATTCATGTA+AGG - chr3_1:66733627-66733646 None:intergenic 30.0%
! GGAGTCAGAAATTTAGTTTA+GGG + chr3_1:66734055-66734074 Msa0369470:intron 30.0%
! GAGTCAGAAATTTAGTTTAG+GGG + chr3_1:66734056-66734075 Msa0369470:intron 30.0%
! AGTCAGAAATTTAGTTTAGG+GGG + chr3_1:66734057-66734076 Msa0369470:intron 30.0%
AATCGCAATAAGTGAATCAT+TGG + chr3_1:66734320-66734339 Msa0369470:intron 30.0%
AATAAGTGAATCATTGGTAG+TGG + chr3_1:66734326-66734345 Msa0369470:intron 30.0%
!!! GGTGTTAACGATTTTAGTTA+AGG + chr3_1:66734486-66734505 Msa0369470:intron 30.0%
!!! TTTTTTCCTCAAAAGTTCTG+AGG + chr3_1:66734643-66734662 Msa0369470:intron 30.0%
!! TTTTTCCTCAAAAGTTCTGA+GGG + chr3_1:66734644-66734663 Msa0369470:intron 30.0%
AAATGTTAATCCTCAAACCA+TGG - chr3_1:66734705-66734724 None:intergenic 30.0%
! AATGACCACTATTTTCTTGA+TGG + chr3_1:66734737-66734756 Msa0369470:intron 30.0%
AATCTTGGTTGTCACATATA+TGG - chr3_1:66734840-66734859 None:intergenic 30.0%
! TGACAACCAAGATTTTACAA+AGG + chr3_1:66734846-66734865 Msa0369470:intron 30.0%
ACTTTCTCTTTCTATTGCTT+TGG - chr3_1:66734894-66734913 None:intergenic 30.0%
CTTGAAAATAAAATTTCCCG+TGG - chr3_1:66735146-66735165 None:intergenic 30.0%
CTTCTTATCATTACGAGAAA+TGG - chr3_1:66735223-66735242 None:intergenic 30.0%
CTCGTAATGATAAGAAGAAT+TGG + chr3_1:66735226-66735245 Msa0369470:intron 30.0%
ACAAAAACGTCGAAATTGTT+AGG + chr3_1:66735357-66735376 Msa0369470:intron 30.0%
GAAGAAATTCAAAATCCTTC+AGG - chr3_1:66735523-66735542 None:intergenic 30.0%
!! AAGTGTTTCTAGCATTAAAC+TGG - chr3_1:66735619-66735638 None:intergenic 30.0%
ATCAAAGGTTTCCATAGATT+TGG - chr3_1:66735736-66735755 None:intergenic 30.0%
! TTCCCCATTAATACATTTTG+AGG + chr3_1:66735946-66735965 Msa0369470:intron 30.0%
ATGATGTGAAACTATCTTCA+TGG + chr3_1:66736016-66736035 Msa0369470:intron 30.0%
!! GGTTGATTTTTCACATGATT+TGG - chr3_1:66736197-66736216 None:intergenic 30.0%
TAAAAATGGAGAGACCAAAA+TGG + chr3_1:66736280-66736299 Msa0369470:intron 30.0%
GAGAAAAAGAAAGAAAAGGA+TGG - chr3_1:66736360-66736379 None:intergenic 30.0%
ATGCTACAATTGAGTTCTAT+TGG + chr3_1:66736416-66736435 Msa0369470:five_prime_UTR 30.0%
TGCTACAATTGAGTTCTATT+GGG + chr3_1:66736417-66736436 Msa0369470:five_prime_UTR 30.0%
GAGTTTGATTCAAGAAGAAA+AGG - chr3_1:66736445-66736464 None:intergenic 30.0%
AACGTACAATATCTTCATGT+TGG - chr3_1:66736596-66736615 None:intergenic 30.0%
! CTATGAAAAGTATGCTTAGA+TGG + chr3_1:66736780-66736799 Msa0369470:five_prime_UTR 30.0%
! ATTTTTAATGCATGAAAGCG+GGG - chr3_1:66736922-66736941 None:intergenic 30.0%
AATTGAAGAACCCTCATATT+GGG + chr3_1:66737432-66737451 Msa0369470:five_prime_UTR 30.0%
CATTATGCTCTTCAATGAAT+CGG - chr3_1:66737461-66737480 None:intergenic 30.0%
! AAGAGCATAATGCAAGTAAT+TGG + chr3_1:66737469-66737488 Msa0369470:five_prime_UTR 30.0%
GTGATGTTGAGAAATGTTAT+GGG - chr3_1:66737520-66737539 None:intergenic 30.0%
AGTGATGTTGAGAAATGTTA+TGG - chr3_1:66737521-66737540 None:intergenic 30.0%
CATCAATCTACAAAAAGCAA+TGG + chr3_1:66737572-66737591 Msa0369470:five_prime_UTR 30.0%
GGTTAGAAAATAAGCTATAG+GGG + chr3_1:66737818-66737837 Msa0369470:five_prime_UTR 30.0%
TGAATTTGGCATTCTTAAAG+TGG - chr3_1:66737880-66737899 None:intergenic 30.0%
ATGTTAGCACCATTTGAATT+TGG - chr3_1:66737894-66737913 None:intergenic 30.0%
! AACATGTTTCACATCACTTT+TGG - chr3_1:66738275-66738294 None:intergenic 30.0%
! AAGTGATGTGAAACATGTTT+TGG + chr3_1:66738276-66738295 Msa0369470:intron 30.0%
! TATTTCCACACACTTTGTTT+AGG + chr3_1:66738546-66738565 Msa0369470:intron 30.0%
AGTTAGATTCTAAACACAGA+AGG + chr3_1:66738601-66738620 Msa0369470:intron 30.0%
AATTAACGCAAATATCGATG+AGG + chr3_1:66738703-66738722 Msa0369470:intron 30.0%
ATTAACGCAAATATCGATGA+GGG + chr3_1:66738704-66738723 Msa0369470:intron 30.0%
!!! ACAGTGTTGGTTTCAGTTTT+GGG - chr3_1:66732658-66732677 None:intergenic 35.0%
!!! TACAGTGTTGGTTTCAGTTT+TGG - chr3_1:66732659-66732678 None:intergenic 35.0%
! CAACACTGTACTCTTTTCAA+CGG + chr3_1:66732669-66732688 Msa0369470:five_prime_UTR 35.0%
!! AAAGAGTGTGACTTGTTTAG+TGG + chr3_1:66732757-66732776 Msa0369470:five_prime_UTR 35.0%
! CTTTCTTTTTGTATACGTGC+TGG + chr3_1:66732953-66732972 Msa0369470:intron 35.0%
!!! GTATACGTGCTGGTTTTTTA+CGG + chr3_1:66732963-66732982 Msa0369470:intron 35.0%
!!! TATACGTGCTGGTTTTTTAC+GGG + chr3_1:66732964-66732983 Msa0369470:intron 35.0%
TACCGACATTCAGAAAACAT+TGG + chr3_1:66733030-66733049 Msa0369470:intron 35.0%
! CTCCAATGTTTTCTGAATGT+CGG - chr3_1:66733035-66733054 None:intergenic 35.0%
TAATGGCCGTACAATATTGT+CGG + chr3_1:66733168-66733187 Msa0369470:intron 35.0%
TTGTGATATCTGTGTGCAAA+AGG + chr3_1:66733320-66733339 Msa0369470:intron 35.0%
! TTGTTGTTATGTTAGAACCC+TGG + chr3_1:66733349-66733368 Msa0369470:intron 35.0%
TTGTTTGGTAAAACCTTTGC+TGG - chr3_1:66733441-66733460 None:intergenic 35.0%
TTATGAGGGACCAAAATTAG+TGG - chr3_1:66733670-66733689 None:intergenic 35.0%
GTGTCGCAATCAAATTATGA+GGG - chr3_1:66733684-66733703 None:intergenic 35.0%
TGTGTCGCAATCAAATTATG+AGG - chr3_1:66733685-66733704 None:intergenic 35.0%
ATTCTTCCTAGCGTCAATTT+AGG - chr3_1:66733747-66733766 None:intergenic 35.0%
ATAAGAATGAATTGGGACCT+GGG - chr3_1:66733800-66733819 None:intergenic 35.0%
AATAAGAATGAATTGGGACC+TGG - chr3_1:66733801-66733820 None:intergenic 35.0%
!!! GACTTATTTTGGTGTGTTCA+CGG - chr3_1:66733938-66733957 None:intergenic 35.0%
ATTGAGACAGACATCTAGAA+CGG + chr3_1:66734034-66734053 Msa0369470:intron 35.0%
! CGGAGTCAGAAATTTAGTTT+AGG + chr3_1:66734054-66734073 Msa0369470:intron 35.0%
AACAACGAAAATGCAAACGT+AGG + chr3_1:66734290-66734309 Msa0369470:intron 35.0%
GTCAACCATCAAGAAAATAG+TGG - chr3_1:66734745-66734764 None:intergenic 35.0%
GTCACAAAAGTTGTCAGAAA+TGG + chr3_1:66734946-66734965 Msa0369470:intron 35.0%
! TGCACTGTCTTTTTACCATA+TGG + chr3_1:66735007-66735026 Msa0369470:intron 35.0%
! GCACTGTCTTTTTACCATAT+GGG + chr3_1:66735008-66735027 Msa0369470:intron 35.0%
! CACTGTCTTTTTACCATATG+GGG + chr3_1:66735009-66735028 Msa0369470:intron 35.0%
TAACTTTATTGCCCAATTGG+AGG - chr3_1:66735036-66735055 None:intergenic 35.0%
AGAGATCCAATGAAAAACCA+CGG + chr3_1:66735126-66735145 Msa0369470:intron 35.0%
! AATTTCCCGTGGTTTTTCAT+TGG - chr3_1:66735135-66735154 None:intergenic 35.0%
! ACGTTTTTGTCTGTTGAGAT+AGG - chr3_1:66735347-66735366 None:intergenic 35.0%
! TTTCTAGAAGGAGAACTTCA+AGG - chr3_1:66735436-66735455 None:intergenic 35.0%
! TGGCATTGAATCTGTAACAT+TGG - chr3_1:66735599-66735618 None:intergenic 35.0%
TTAATGCTAGAAACACTTCG+TGG + chr3_1:66735621-66735640 Msa0369470:five_prime_UTR 35.0%
TAATGCTAGAAACACTTCGT+GGG + chr3_1:66735622-66735641 Msa0369470:five_prime_UTR 35.0%
TTCCATAGATTTGGCATGTT+GGG - chr3_1:66735727-66735746 None:intergenic 35.0%
TTTCCATAGATTTGGCATGT+TGG - chr3_1:66735728-66735747 None:intergenic 35.0%
GCACATAAGCTATGAACAAA+AGG - chr3_1:66735794-66735813 None:intergenic 35.0%
ATCGTGGAATTTGATATCGA+GGG - chr3_1:66735894-66735913 None:intergenic 35.0%
AATCGTGGAATTTGATATCG+AGG - chr3_1:66735895-66735914 None:intergenic 35.0%
AAATCAAGGGACTTTAATCG+TGG - chr3_1:66735910-66735929 None:intergenic 35.0%
!!! TCGGTCGTTTTGAAAATCAA+GGG - chr3_1:66735923-66735942 None:intergenic 35.0%
ATGTATTAATGGGGAAGAGT+CGG - chr3_1:66735942-66735961 None:intergenic 35.0%
ATAGTTTCACATCATCAACC+AGG - chr3_1:66736011-66736030 None:intergenic 35.0%
GATGTGGAACATTATTTACG+TGG + chr3_1:66736110-66736129 Msa0369470:intron 35.0%
TTATGTGACAACTAAGTCGA+TGG - chr3_1:66736162-66736181 None:intergenic 35.0%
ATCAACCCAAAATGCATAGA+TGG + chr3_1:66736210-66736229 Msa0369470:intron 35.0%
TCAACCCAAAATGCATAGAT+GGG + chr3_1:66736211-66736230 Msa0369470:intron 35.0%
! TTTCCCCATCTATGCATTTT+GGG - chr3_1:66736218-66736237 None:intergenic 35.0%
! TTTTCCCCATCTATGCATTT+TGG - chr3_1:66736219-66736238 None:intergenic 35.0%
! CATTTTTAAATCCGCAGGTT+TGG - chr3_1:66736268-66736287 None:intergenic 35.0%
CAAACCTGCGGATTTAAAAA+TGG + chr3_1:66736266-66736285 Msa0369470:intron 35.0%
CAATTCTATCAGTTACCCTA+TGG - chr3_1:66736483-66736502 None:intergenic 35.0%
AAGGGTTCAATCAATAAGCA+CGG + chr3_1:66736508-66736527 Msa0369470:five_prime_UTR 35.0%
TCAATAAGCACGGTTGTTAT+TGG + chr3_1:66736518-66736537 Msa0369470:five_prime_UTR 35.0%
TGGTATTCAACACCTATCTT+TGG + chr3_1:66736557-66736576 Msa0369470:five_prime_UTR 35.0%
TATTCAACACCTATCTTTGG+TGG + chr3_1:66736560-66736579 Msa0369470:five_prime_UTR 35.0%
ATTCAACACCTATCTTTGGT+GGG + chr3_1:66736561-66736580 Msa0369470:five_prime_UTR 35.0%
!! TCTACTCAAATTTTCAGGCT+TGG + chr3_1:66736695-66736714 Msa0369470:intron 35.0%
TAGATGGGTGAAAATGAACA+TGG + chr3_1:66736796-66736815 Msa0369470:five_prime_UTR 35.0%
TATACTCACTTTCCATGAGA+AGG - chr3_1:66736860-66736879 None:intergenic 35.0%
! ACAATTTTCTACGCTGAAAG+TGG + chr3_1:66737114-66737133 Msa0369470:intron 35.0%
CAATATGAGGGTTCTTCAAT+TGG - chr3_1:66737433-66737452 None:intergenic 35.0%
CAATTGAAGAACCCTCATAT+TGG + chr3_1:66737431-66737450 Msa0369470:five_prime_UTR 35.0%
ATTGAAGAACCCTCATATTG+GGG + chr3_1:66737433-66737452 Msa0369470:five_prime_UTR 35.0%
TTGATGTATGTGCGTCTTTA+CGG - chr3_1:66737558-66737577 None:intergenic 35.0%
!! TCAATTTCCGTGTTGTTTCA+AGG - chr3_1:66737715-66737734 None:intergenic 35.0%
CGGAAATTGAACAGATTTCT+TGG + chr3_1:66737725-66737744 Msa0369470:five_prime_UTR 35.0%
AAATTGGAAGATAAGGCATG+TGG + chr3_1:66737772-66737791 Msa0369470:five_prime_UTR 35.0%
AATTGGAAGATAAGGCATGT+GGG + chr3_1:66737773-66737792 Msa0369470:five_prime_UTR 35.0%
! GGGGTTTTACATGAGAAAAT+TGG + chr3_1:66737837-66737856 Msa0369470:five_prime_UTR 35.0%
CTTGAACTTAAAGCAGTCTT+TGG + chr3_1:66738000-66738019 Msa0369470:five_prime_UTR 35.0%
GAAACATAGTGATGCAAGTT+AGG + chr3_1:66738029-66738048 Msa0369470:exon 35.0%
! GAGTTGTTGTTGTTGTTCAA+AGG + chr3_1:66738094-66738113 Msa0369470:CDS 35.0%
AAAACTCAATATCGCCCAAA+TGG - chr3_1:66738183-66738202 None:intergenic 35.0%
! ATTTGGGCGATATTGAGTTT+TGG + chr3_1:66738182-66738201 Msa0369470:intron 35.0%
!! TAGAGTGTTAGTTCCACTTT+TGG - chr3_1:66738318-66738337 None:intergenic 35.0%
GATTCTAAACACAGAAGGAA+AGG + chr3_1:66738606-66738625 Msa0369470:intron 35.0%
! AACAGCTCATGATTTTTCAC+AGG - chr3_1:66738750-66738769 None:intergenic 35.0%
TCAGAAACTGCAGAAGAAAA+TGG + chr3_1:66738869-66738888 Msa0369470:CDS 35.0%
CAGAAACTGCAGAAGAAAAT+GGG + chr3_1:66738870-66738889 Msa0369470:CDS 35.0%
TTGAATGAGTTTGCCATGCA+TGG - chr3_1:66732496-66732515 None:intergenic 40.0%
AAGAGATAAGAAGAGAGACG+AGG - chr3_1:66732544-66732563 None:intergenic 40.0%
!! GAAGAGGATGATGGATAAGA+GGG - chr3_1:66732569-66732588 None:intergenic 40.0%
!! TGAAGAGGATGATGGATAAG+AGG - chr3_1:66732570-66732589 None:intergenic 40.0%
!!! CAGTGTTGGTTTCAGTTTTG+GGG - chr3_1:66732657-66732676 None:intergenic 40.0%
! CGTTGAAAAGAGTACAGTGT+TGG - chr3_1:66732671-66732690 None:intergenic 40.0%
! CTTTTTCTCCACCTCTTGAA+CGG - chr3_1:66732713-66732732 None:intergenic 40.0%
!! AGTGTGACTTGTTTAGTGGA+AGG + chr3_1:66732761-66732780 Msa0369470:five_prime_UTR 40.0%
!! TGACTTGTTTAGTGGAAGGT+GGG + chr3_1:66732765-66732784 Msa0369470:five_prime_UTR 40.0%
CACTCAGATTCCTCATACAA+TGG - chr3_1:66732811-66732830 None:intergenic 40.0%
GTCAACTGTGGCTGTATATA+AGG - chr3_1:66732835-66732854 None:intergenic 40.0%
! TGTTCTAGACAAGTCAACTG+TGG - chr3_1:66732847-66732866 None:intergenic 40.0%
!! CAGTTGACTTGTCTAGAACA+TGG + chr3_1:66732847-66732866 Msa0369470:five_prime_UTR 40.0%
GTTTACAATGGCAAACAAGG+CGG + chr3_1:66733535-66733554 Msa0369470:intron 40.0%
TTCCTAGCGTCAATTTAGGT+GGG - chr3_1:66733743-66733762 None:intergenic 40.0%
AGTTCGTGACATTTCCATAC+AGG - chr3_1:66733867-66733886 None:intergenic 40.0%
AACGAAAATGCAAACGTAGG+AGG + chr3_1:66734293-66734312 Msa0369470:intron 40.0%
GTTAATCCTCAAACCATGGA+CGG - chr3_1:66734701-66734720 None:intergenic 40.0%
! TTCTTGATGGTTGACACTTC+TGG + chr3_1:66734750-66734769 Msa0369470:intron 40.0%
TGGTAAAAAGACAGTGCATG+TGG - chr3_1:66735005-66735024 None:intergenic 40.0%
!! ATTCTTGCTGTGTCTTTTGC+AGG - chr3_1:66735077-66735096 None:intergenic 40.0%
GAGATCCAATGAAAAACCAC+GGG + chr3_1:66735127-66735146 Msa0369470:intron 40.0%
GTCTGTTGAGATAGGACTTA+TGG - chr3_1:66735339-66735358 None:intergenic 40.0%
GGAAGAGGATGATGTTTGTT+GGG + chr3_1:66735643-66735662 Msa0369470:five_prime_UTR 40.0%
! GAAGAGGATGATGTTTGTTG+GGG + chr3_1:66735644-66735663 Msa0369470:five_prime_UTR 40.0%
CATGTTGGGGAATAAGATGA+TGG - chr3_1:66735713-66735732 None:intergenic 40.0%
TCCATAGATTTGGCATGTTG+GGG - chr3_1:66735726-66735745 None:intergenic 40.0%
GAAGACAGTGAGAGAATCAA+AGG - chr3_1:66735751-66735770 None:intergenic 40.0%
!!! GTCGGTCGTTTTGAAAATCA+AGG - chr3_1:66735924-66735943 None:intergenic 40.0%
CAACCCAAAATGCATAGATG+GGG + chr3_1:66736212-66736231 Msa0369470:intron 40.0%
!! CTCTCCATTTTTAAATCCGC+AGG - chr3_1:66736273-66736292 None:intergenic 40.0%
CCTATGGATGACAGCATTAT+CGG - chr3_1:66736467-66736486 None:intergenic 40.0%
CGATAATGCTGTCATCCATA+GGG + chr3_1:66736465-66736484 Msa0369470:five_prime_UTR 40.0%
! AAGCACGGTTGTTATTGGAA+AGG + chr3_1:66736523-66736542 Msa0369470:five_prime_UTR 40.0%
!! ATTAGGGGCTAGTTATGCAA+TGG - chr3_1:66736670-66736689 None:intergenic 40.0%
! TTTCAGGCTTGGTTCTTTCA+AGG + chr3_1:66736706-66736725 Msa0369470:intron 40.0%
GATTGTTGAGATGCAAACAG+AGG + chr3_1:66736742-66736761 Msa0369470:five_prime_UTR 40.0%
! ACTTTTCATAGCCATGCGAT+AGG - chr3_1:66736771-66736790 None:intergenic 40.0%
!! GAAGAAGACTCTAGTCTTGT+TGG - chr3_1:66736825-66736844 None:intergenic 40.0%
GCTGAAAGTGGTTAAAGACT+CGG + chr3_1:66737126-66737145 Msa0369470:intron 40.0%
CAAGCTACTAAAATCTTCCC+CGG + chr3_1:66737165-66737184 Msa0369470:intron 40.0%
AAGCTACTAAAATCTTCCCC+GGG + chr3_1:66737166-66737185 Msa0369470:intron 40.0%
!! ATGTTTTATTGTTCTCGGGG+AGG - chr3_1:66737200-66737219 None:intergenic 40.0%
GCTCGGAGGTAAGTAAAATA+TGG - chr3_1:66737281-66737300 None:intergenic 40.0%
!! ATTTTGGCAGGAGTATAGAG+TGG + chr3_1:66737368-66737387 Msa0369470:intron 40.0%
!! TTTTGGCAGGAGTATAGAGT+GGG + chr3_1:66737369-66737388 Msa0369470:intron 40.0%
TACAATCAGAGTAGCTAGCA+GGG - chr3_1:66737627-66737646 None:intergenic 40.0%
ATACAATCAGAGTAGCTAGC+AGG - chr3_1:66737628-66737647 None:intergenic 40.0%
GCTACTCTGATTGTATACAC+TGG + chr3_1:66737632-66737651 Msa0369470:five_prime_UTR 40.0%
TGTATACACTGGTGTTTACC+TGG + chr3_1:66737643-66737662 Msa0369470:five_prime_UTR 40.0%
TACCTGGACTTCAAGATACT+TGG + chr3_1:66737659-66737678 Msa0369470:five_prime_UTR 40.0%
TTCCAAGTATCTTGAAGTCC+AGG - chr3_1:66737664-66737683 None:intergenic 40.0%
! ATGGTGCTAACATATGTACG+TGG + chr3_1:66737901-66737920 Msa0369470:five_prime_UTR 40.0%
GTGAGACTCAATTGTGACTT+TGG + chr3_1:66738133-66738152 Msa0369470:intron 40.0%
TTGGATCAAATAGTGATGCG+AGG + chr3_1:66738152-66738171 Msa0369470:intron 40.0%
TGGATCAAATAGTGATGCGA+GGG + chr3_1:66738153-66738172 Msa0369470:intron 40.0%
ATTTAGTGCTTCGATGACTG+TGG - chr3_1:66738440-66738459 None:intergenic 40.0%
! GTCATCGAAGCACTAAATCA+AGG + chr3_1:66738442-66738461 Msa0369470:intron 40.0%
! GAAGCACTAAATCAAGGTTG+AGG + chr3_1:66738448-66738467 Msa0369470:intron 40.0%
GTCTACCTAAACAAAGTGTG+TGG - chr3_1:66738554-66738573 None:intergenic 40.0%
ACCAACGAGGAAATTCTTCT+TGG + chr3_1:66738664-66738683 Msa0369470:intron 40.0%
TCCAAGAAGAATTTCCTCGT+TGG - chr3_1:66738668-66738687 None:intergenic 40.0%
TATCGATGAGGGAAAAATGC+AGG + chr3_1:66738715-66738734 Msa0369470:intron 40.0%
ATCGATGAGGGAAAAATGCA+GGG + chr3_1:66738716-66738735 Msa0369470:intron 40.0%
TTCGTCGATGTTTATGACAG+TGG + chr3_1:66738769-66738788 Msa0369470:intron 40.0%
TGCAGAAGAAAATGGGATCA+AGG + chr3_1:66738877-66738896 Msa0369470:CDS 40.0%
AGAAAATGGGATCAAGGCAT+TGG + chr3_1:66738883-66738902 Msa0369470:CDS 40.0%
!!! AGTATTTTGGGGTCCATGCA+TGG + chr3_1:66732480-66732499 Msa0369470:five_prime_UTR 45.0%
GAAGAGGAAGAGGAAGTCAT+GGG - chr3_1:66732611-66732630 None:intergenic 45.0%
!!! TGTTGGTTTCAGTTTTGGGG+TGG - chr3_1:66732654-66732673 None:intergenic 45.0%
CGTTCAAGAGGTGGAGAAAA+AGG + chr3_1:66732711-66732730 Msa0369470:five_prime_UTR 45.0%
!! GTGACTTGTTTAGTGGAAGG+TGG + chr3_1:66732764-66732783 Msa0369470:five_prime_UTR 45.0%
GTTGACTAGGCCATTGTATG+AGG + chr3_1:66732798-66732817 Msa0369470:five_prime_UTR 45.0%
! TGACTTGTCTAGAACATGGC+CGG + chr3_1:66732851-66732870 Msa0369470:five_prime_UTR 45.0%
TTTACGGGTCAAGTTAACGG+TGG + chr3_1:66732979-66732998 Msa0369470:intron 45.0%
GTGGGTCAGAGTGTAATTGT+TGG + chr3_1:66733001-66733020 Msa0369470:intron 45.0%
CACATTGCAAGTTCGAACCA+GGG - chr3_1:66733369-66733388 None:intergenic 45.0%
ACACATTGCAAGTTCGAACC+AGG - chr3_1:66733370-66733389 None:intergenic 45.0%
CGATCTCACAATTCCAGCAA+AGG + chr3_1:66733425-66733444 Msa0369470:intron 45.0%
CTTCCTAGCGTCAATTTAGG+TGG - chr3_1:66733744-66733763 None:intergenic 45.0%
TCCTGAATACACACACCTGA+AGG + chr3_1:66735505-66735524 Msa0369470:intron 45.0%
TCCTTCAGGTGTGTGTATTC+AGG - chr3_1:66735509-66735528 None:intergenic 45.0%
TAGAAACACTTCGTGGGAAG+AGG + chr3_1:66735628-66735647 Msa0369470:five_prime_UTR 45.0%
GGGAAGAGGATGATGTTTGT+TGG + chr3_1:66735642-66735661 Msa0369470:five_prime_UTR 45.0%
CACATACTGACCCCTATTGA+GGG - chr3_1:66735673-66735692 None:intergenic 45.0%
ACACATACTGACCCCTATTG+AGG - chr3_1:66735674-66735693 None:intergenic 45.0%
!! GGGGAATAAGATGATGGAGA+AGG - chr3_1:66735707-66735726 None:intergenic 45.0%
TCCCCAACATGCCAAATCTA+TGG + chr3_1:66735722-66735741 Msa0369470:five_prime_UTR 45.0%
CAAAAGGTAGCTAGCTACCT+TGG - chr3_1:66735778-66735797 None:intergenic 45.0%
GAGATGCTTATGTGACAACC+TGG + chr3_1:66735990-66736009 Msa0369470:intron 45.0%
CCGATAATGCTGTCATCCAT+AGG + chr3_1:66736464-66736483 Msa0369470:five_prime_UTR 45.0%
!! TTGGAAAGGCGCAGACATTT+TGG + chr3_1:66736537-66736556 Msa0369470:five_prime_UTR 45.0%
! ACCTATCTTTGGTGGGTAAC+TGG + chr3_1:66736568-66736587 Msa0369470:five_prime_UTR 45.0%
! AGAGAATTCGGCTCGAATCT+TGG + chr3_1:66737239-66737258 Msa0369470:intron 45.0%
! TTTGGCAGGAGTATAGAGTG+GGG + chr3_1:66737370-66737389 Msa0369470:intron 45.0%
GAATCGGATCCCCAATATGA+GGG - chr3_1:66737445-66737464 None:intergenic 45.0%
TGAATCGGATCCCCAATATG+AGG - chr3_1:66737446-66737465 None:intergenic 45.0%
ATGTGCGTCTTTACGGTAGT+TGG - chr3_1:66737551-66737570 None:intergenic 45.0%
!! GCTAGTTGTTCTGGAGTCAA+TGG - chr3_1:66737601-66737620 None:intergenic 45.0%
GGATCAAATAGTGATGCGAG+GGG + chr3_1:66738154-66738173 Msa0369470:intron 45.0%
GATCAAATAGTGATGCGAGG+GGG + chr3_1:66738155-66738174 Msa0369470:intron 45.0%
TCTCTTTCTCTCCTGAGACA+CGG + chr3_1:66738222-66738241 Msa0369470:intron 45.0%
GTCTTCGCAAGATCCAAAAG+TGG + chr3_1:66738302-66738321 Msa0369470:intron 45.0%
!!! ATTTTCTAGAGGCACCAACG+AGG + chr3_1:66738651-66738670 Msa0369470:intron 45.0%
!! AATAAATAATAAAAAACATT+CGG + chr3_1:66733087-66733106 Msa0369470:intron 5.0%
!!! ATGATTATTTTTTATTTTTT+TGG + chr3_1:66737797-66737816 Msa0369470:five_prime_UTR 5.0%
!! ATGGGTGTTGAGGATGATGG+CGG - chr3_1:66732593-66732612 None:intergenic 50.0%
!! GTCATGGGTGTTGAGGATGA+TGG - chr3_1:66732596-66732615 None:intergenic 50.0%
! AGAGGAAGTCATGGGTGTTG+AGG - chr3_1:66732603-66732622 None:intergenic 50.0%
GGAAGAGGAAGAGGAAGTCA+TGG - chr3_1:66732612-66732631 None:intergenic 50.0%
GTTGAAGATGTGGACGGAAG+AGG - chr3_1:66732627-66732646 None:intergenic 50.0%
GGAGCTGTTGAAGATGTGGA+CGG - chr3_1:66732633-66732652 None:intergenic 50.0%
GTCCAACAACACCGTTCAAG+AGG + chr3_1:66732699-66732718 Msa0369470:five_prime_UTR 50.0%
!! CACCTCTTGAACGGTGTTGT+TGG - chr3_1:66732704-66732723 None:intergenic 50.0%
CAACAACACCGTTCAAGAGG+TGG + chr3_1:66732702-66732721 Msa0369470:five_prime_UTR 50.0%
GTTTAGTGGAAGGTGGGTGA+AGG + chr3_1:66732771-66732790 Msa0369470:five_prime_UTR 50.0%
! GGGTGAAGGATGAGTTGACT+AGG + chr3_1:66732785-66732804 Msa0369470:five_prime_UTR 50.0%
AACCGGCGGTACTCTTTATC+CGG - chr3_1:66732877-66732896 None:intergenic 50.0%
!! ATAAAGAGTACCGCCGGTTG+CGG + chr3_1:66732878-66732897 Msa0369470:five_prime_UTR 50.0%
GGCAAACAAGGCGGTAGAAT+CGG + chr3_1:66733544-66733563 Msa0369470:intron 50.0%
AGCCCACCTAAATTGACGCT+AGG + chr3_1:66733738-66733757 Msa0369470:intron 50.0%
GAATCGAAACTGAGACCTCG+AGG + chr3_1:66733763-66733782 Msa0369470:intron 50.0%
! ACGGTCCCTCAGAACTTTTG+AGG - chr3_1:66734652-66734671 None:intergenic 50.0%
AAACCATGGACGGAGCTAGA+AGG - chr3_1:66734691-66734710 None:intergenic 50.0%
ACCATATGGGGTCCTCCAAT+TGG + chr3_1:66735021-66735040 Msa0369470:intron 50.0%
CCATATGGGGTCCTCCAATT+GGG + chr3_1:66735022-66735041 Msa0369470:intron 50.0%
TTGTTGGGGACTCCCTCAAT+AGG + chr3_1:66735658-66735677 Msa0369470:five_prime_UTR 50.0%
TGTTGGGGACTCCCTCAATA+GGG + chr3_1:66735659-66735678 Msa0369470:five_prime_UTR 50.0%
TCTCACTGTCTTCACAGCCA+AGG + chr3_1:66735758-66735777 Msa0369470:five_prime_UTR 50.0%
AAACTAAGGGGCCAAACCTG+CGG + chr3_1:66736254-66736273 Msa0369470:intron 50.0%
GCCAGTTACCCACCAAAGAT+AGG - chr3_1:66736572-66736591 None:intergenic 50.0%
AACAGAGGAAGCCTATCGCA+TGG + chr3_1:66736757-66736776 Msa0369470:five_prime_UTR 50.0%
TGTGACTGCACACATCAGCT+CGG - chr3_1:66737298-66737317 None:intergenic 50.0%
TCATTGTAGCAGTTCCCTCC+TGG - chr3_1:66737403-66737422 None:intergenic 50.0%
!! GCAGGGTTAGCTAGTTGTTC+TGG - chr3_1:66737610-66737629 None:intergenic 50.0%
TCTCCTGAGACACGGAAACA+CGG + chr3_1:66738230-66738249 Msa0369470:intron 50.0%
! GATGGCGGTGAAGAGGATGA+TGG - chr3_1:66732578-66732597 None:intergenic 55.0%
!! TGAGGATGATGGCGGTGAAG+AGG - chr3_1:66732585-66732604 None:intergenic 55.0%
GATGTGGACGGAAGAGGAAG+AGG - chr3_1:66732621-66732640 None:intergenic 55.0%
GGGTGGAGCTGTTGAAGATG+TGG - chr3_1:66732637-66732656 None:intergenic 55.0%
! TTGTCTAGAACATGGCCGGC+CGG + chr3_1:66732855-66732874 Msa0369470:five_prime_UTR 55.0%
TTGGGAAGATCGCAACCGTG+AGG - chr3_1:66732910-66732929 None:intergenic 55.0%
ACGGGTCAAGTTAACGGTGG+TGG + chr3_1:66732982-66733001 Msa0369470:intron 55.0%
CGGGTCAAGTTAACGGTGGT+GGG + chr3_1:66732983-66733002 Msa0369470:intron 55.0%
TCGAAACTGAGACCTCGAGG+TGG + chr3_1:66733766-66733785 Msa0369470:intron 55.0%
AGGAGGATGAGCAGTGGTCA+CGG - chr3_1:66734671-66734690 None:intergenic 55.0%
GCTAGAAGGAGGATGAGCAG+TGG - chr3_1:66734677-66734696 None:intergenic 55.0%
CTAGCTCCGTCCATGGTTTG+AGG + chr3_1:66734692-66734711 Msa0369470:intron 55.0%
CCCAATTGGAGGACCCCATA+TGG - chr3_1:66735025-66735044 None:intergenic 55.0%
GTTGGGGACTCCCTCAATAG+GGG + chr3_1:66735660-66735679 Msa0369470:five_prime_UTR 55.0%
ACCAGCATGTCGCCTTCTCA+TGG + chr3_1:66736845-66736864 Msa0369470:five_prime_UTR 55.0%
TCCATGAGAAGGCGACATGC+TGG - chr3_1:66736849-66736868 None:intergenic 55.0%
AAACTCGGATTCCCTGCCGT+CGG + chr3_1:66736891-66736910 Msa0369470:intron 55.0%
! GCAGGAGTATAGAGTGGGGA+GGG + chr3_1:66737374-66737393 Msa0369470:intron 55.0%
! CAGGAGTATAGAGTGGGGAG+GGG + chr3_1:66737375-66737394 Msa0369470:intron 55.0%
TGATGCGAGGGGGTTCCATT+TGG + chr3_1:66738165-66738184 Msa0369470:intron 55.0%
GATGCGAGGGGGTTCCATTT+GGG + chr3_1:66738166-66738185 Msa0369470:intron 55.0%
ACACGGAGGATTGTCTTCGC+AGG + chr3_1:66738247-66738266 Msa0369470:intron 55.0%
GGCGGTACTCTTTATCCGGC+CGG - chr3_1:66732873-66732892 None:intergenic 60.0%
!! GGCCGGATAAAGAGTACCGC+CGG + chr3_1:66732872-66732891 Msa0369470:five_prime_UTR 60.0%
CCATGGACGGAGCTAGAAGG+AGG - chr3_1:66734688-66734707 None:intergenic 60.0%
!! CCTCCTTCTAGCTCCGTCCA+TGG + chr3_1:66734685-66734704 Msa0369470:intron 60.0%
AACTCGGATTCCCTGCCGTC+GGG + chr3_1:66736892-66736911 Msa0369470:intron 60.0%
TGAAAGCGGGGAATCCCCGA+CGG - chr3_1:66736910-66736929 None:intergenic 60.0%
TCGGGGAGGATTGTCTACCC+GGG - chr3_1:66737186-66737205 None:intergenic 60.0%
CTCGGGGAGGATTGTCTACC+CGG - chr3_1:66737187-66737206 None:intergenic 60.0%
GACTGCACACATCAGCTCGG+AGG - chr3_1:66737295-66737314 None:intergenic 60.0%
! GGCAGGAGTATAGAGTGGGG+AGG + chr3_1:66737373-66737392 Msa0369470:intron 60.0%
ATAGAGTGGGGAGGGGAACC+AGG + chr3_1:66737382-66737401 Msa0369470:five_prime_UTR 60.0%
CCTCCGTGTTTCCGTGTCTC+AGG - chr3_1:66738236-66738255 None:intergenic 60.0%
CCTGAGACACGGAAACACGG+AGG + chr3_1:66738233-66738252 Msa0369470:intron 60.0%
!! AAGAGTACCGCCGGTTGCGG+TGG + chr3_1:66732881-66732900 Msa0369470:five_prime_UTR 65.0%
! TGGGAGTGTGCTCCACCTCG+AGG - chr3_1:66733781-66733800 None:intergenic 65.0%
TCGAGGTGGAGCACACTCCC+AGG + chr3_1:66733780-66733799 Msa0369470:intron 65.0%
ACTCGGATTCCCTGCCGTCG+GGG + chr3_1:66736893-66736912 Msa0369470:intron 65.0%
CGGGGAGGATTGTCTACCCG+GGG - chr3_1:66737185-66737204 None:intergenic 65.0%
AGTGGGGAGGGGAACCAGGA+GGG + chr3_1:66737386-66737405 Msa0369470:five_prime_UTR 65.0%
CGTGAGGCTGCCACCGCAAC+CGG - chr3_1:66732894-66732913 None:intergenic 70.0%
CGGTTGCGGTGGCAGCCTCA+CGG + chr3_1:66732892-66732911 Msa0369470:five_prime_UTR 70.0%
GAGTGGGGAGGGGAACCAGG+AGG + chr3_1:66737385-66737404 Msa0369470:five_prime_UTR 70.0%
GAGGCTGCCACCGCAACCGG+CGG - chr3_1:66732891-66732910 None:intergenic 75.0%
GCGGGGAATCCCCGACGGCA+GGG - chr3_1:66736905-66736924 None:intergenic 75.0%
AGCGGGGAATCCCCGACGGC+AGG - chr3_1:66736906-66736925 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66732398 66738924 66732398 ID=Msa0369470;Name=Msa0369470
chr3_1 mRNA 66732398 66738924 66732398 ID=Msa0369470-mRNA-1;Parent=Msa0369470;Name=Msa0369470-mRNA-1;_AED=0.32;_eAED=0.32;_QI=1725|0.8|0.83|1|0.8|0.66|6|0|71
chr3_1 exon 66732398 66732929 66732398 ID=Msa0369470-mRNA-1:exon:13598;Parent=Msa0369470-mRNA-1
chr3_1 exon 66735608 66735779 66735608 ID=Msa0369470-mRNA-1:exon:13599;Parent=Msa0369470-mRNA-1
chr3_1 exon 66736409 66736608 66736409 ID=Msa0369470-mRNA-1:exon:13600;Parent=Msa0369470-mRNA-1
chr3_1 exon 66736712 66736870 66736712 ID=Msa0369470-mRNA-1:exon:13601;Parent=Msa0369470-mRNA-1
chr3_1 exon 66737378 66738145 66737378 ID=Msa0369470-mRNA-1:exon:13602;Parent=Msa0369470-mRNA-1
chr3_1 exon 66738815 66738924 66738815 ID=Msa0369470-mRNA-1:exon:13603;Parent=Msa0369470-mRNA-1
chr3_1 five_prime_UTR 66732398 66732929 66732398 ID=Msa0369470-mRNA-1:five_prime_utr;Parent=Msa0369470-mRNA-1
chr3_1 five_prime_UTR 66735608 66735779 66735608 ID=Msa0369470-mRNA-1:five_prime_utr;Parent=Msa0369470-mRNA-1
chr3_1 five_prime_UTR 66736409 66736608 66736409 ID=Msa0369470-mRNA-1:five_prime_utr;Parent=Msa0369470-mRNA-1
chr3_1 five_prime_UTR 66736712 66736870 66736712 ID=Msa0369470-mRNA-1:five_prime_utr;Parent=Msa0369470-mRNA-1
chr3_1 five_prime_UTR 66737378 66738039 66737378 ID=Msa0369470-mRNA-1:five_prime_utr;Parent=Msa0369470-mRNA-1
chr3_1 CDS 66738040 66738145 66738040 ID=Msa0369470-mRNA-1:cds;Parent=Msa0369470-mRNA-1
chr3_1 CDS 66738815 66738924 66738815 ID=Msa0369470-mRNA-1:cds;Parent=Msa0369470-mRNA-1
Gene Sequence

>Msa0369470

ATGCAAGTTAGGCTATTTTCTTTTTTCTTTGTTAAGAAGGGTGCAGAAGCATCAGAGTTGTTGTTGTTGTTCAAAGGAGATGATAAGCTTAGTGTGAGACTCAATTGTTTAGAAATCTATAAAGTACTCATGAATGCATCCGATGAACAACATAAGATTTTCAGAAACTGCAGAAGAAAATGGGATCAAGGCATTGGATTCCAAGTACAAAACTGA
Protein sequence

>Msa0369470

MQVRLFSFFFVKKGAEASELLLLFKGDDKLSVRLNCLEIYKVLMNASDEQHKIFRNCRRKWDQGIGFQVQN*