AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429070 MtrunA17_Chr5g0405401 91.096 292 23 2 1 292 1 289 7.99e-180 497
Msa1429070 MtrunA17_Chr8g0371981 50.862 348 97 15 1 285 1 337 2.44e-71 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429070 AT5G66230.1 40.058 347 128 14 1 285 1 329 8.92e-45 155
Msa1429070 AT5G66230.2 39.481 347 130 14 1 285 217 545 7.34e-42 151
Msa1429070 AT3G51230.1 44.954 109 39 3 1 91 1 106 5.97e-18 80.5

Find 68 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTTAAAACTTTAAT+TGG 0.102517 tig0026434:-19358 None:intergenic
CCTCAAATTCAGAGTCTTTC+TGG 0.117151 tig0026434:+18113 Msa1429070:CDS
AAACGAAGATGTTTCCCTTT+TGG 0.292026 tig0026434:-19152 None:intergenic
CAATCTTCAATCACTTTCAA+TGG 0.312934 tig0026434:+17653 Msa1429070:exon
TCACCAATTGTGGGTCTTGC+TGG 0.314090 tig0026434:+17963 Msa1429070:CDS
GTGAGAGTTGTTGTGGATGA+TGG 0.320301 tig0026434:-17681 None:intergenic
ATGATGGCAGGTGGTGAAAA+TGG 0.338531 tig0026434:+18677 Msa1429070:intron
TCAAGATCGATGTGCATTGA+TGG 0.354068 tig0026434:+17926 Msa1429070:CDS
CTCTGAGAAGTCAAGGGACT+TGG 0.360313 tig0026434:-18736 None:intergenic
CCAGAAAGACTCTGAATTTG+AGG 0.370802 tig0026434:-18113 None:intergenic
TCTGCTAACTAAGTGATTCA+TGG 0.393469 tig0026434:+19229 Msa1429070:three_prime_UTR
TAGATGAAGATGCTTCTATC+TGG 0.397277 tig0026434:+18826 Msa1429070:CDS
CTTCTTCAACCATCTGCATA+AGG 0.410420 tig0026434:-18082 None:intergenic
ACCTAATGTGTTGCATTTGA+AGG 0.412380 tig0026434:+19118 Msa1429070:CDS
AAGGTGGTTCCAAAATTTGC+TGG 0.416494 tig0026434:+19017 Msa1429070:CDS
TCAACAACAATCAATTTCTC+AGG 0.428450 tig0026434:+18163 Msa1429070:CDS
TGAGAGTTGTTGTGGATGAT+GGG 0.430806 tig0026434:-17680 None:intergenic
AAGGGATTACCAACACCAAA+AGG 0.433129 tig0026434:+19137 Msa1429070:CDS
CCCTTCAAATGCAACACATT+AGG 0.434003 tig0026434:-19119 None:intergenic
GACAAATGATTCACCAATTG+TGG 0.435186 tig0026434:+17953 Msa1429070:CDS
TTCTTCAACCATCTGCATAA+GGG 0.467939 tig0026434:-18081 None:intergenic
AGCAAAGCTTCACCAGATCC+TGG 0.479015 tig0026434:-18041 None:intergenic
ATAATGAAAAGAAGTGAAGA+AGG 0.485936 tig0026434:-17566 None:intergenic
AGATGATGTGGAGGAAGAAA+TGG 0.496240 tig0026434:+18881 Msa1429070:CDS
CCACCAGCAAGACCCACAAT+TGG 0.497063 tig0026434:-17966 None:intergenic
GTGAAGAACACACCAGGATC+TGG 0.501240 tig0026434:+18029 Msa1429070:CDS
CCTAATGTGTTGCATTTGAA+GGG 0.505604 tig0026434:+19119 Msa1429070:CDS
GAGATTTCTCTGAGAAGTCA+AGG 0.515939 tig0026434:-18743 None:intergenic
TATGCAGATGGTTGAAGAAG+AGG 0.527703 tig0026434:+18085 Msa1429070:CDS
TTGGAATATTTGAAGACCAC+AGG 0.529441 tig0026434:-19312 None:intergenic
AGATTCTGTGTCAAAATCAA+AGG 0.534978 tig0026434:+17893 Msa1429070:CDS
TTTGAAGACCACAGGAATTG+TGG 0.545785 tig0026434:-19304 None:intergenic
GATTCTGTGTCAAAATCAAA+GGG 0.549781 tig0026434:+17894 Msa1429070:CDS
CTACCTCTTTGTTTCGCAGA+CGG 0.551296 tig0026434:-18002 None:intergenic
GTGACAGAAGGAAGTGTGGT+TGG 0.552956 tig0026434:+18792 Msa1429070:CDS
ATCTGGTGAAGCTTTGCTGA+GGG 0.555103 tig0026434:+18046 Msa1429070:CDS
GAGAGTTGTTGTGGATGATG+GGG 0.555778 tig0026434:-17679 None:intergenic
CAACATTAGAGTGAATGAAA+AGG 0.556085 tig0026434:+18998 Msa1429070:CDS
CTTGTGAATGAAGTGGAGGA+TGG 0.558010 tig0026434:+19077 Msa1429070:CDS
AGATTTCTCTGAGAAGTCAA+GGG 0.560895 tig0026434:-18742 None:intergenic
GGTGTTGGTGAGAGTTGTTG+TGG 0.563322 tig0026434:-17688 None:intergenic
CCAATTGTGGGTCTTGCTGG+TGG 0.574159 tig0026434:+17966 Msa1429070:CDS
TTTCATATTCACAGCTACCT+TGG 0.574412 tig0026434:-18701 None:intergenic
GGCTTGATGAACTGTGTGAA+GGG 0.581098 tig0026434:+18970 Msa1429070:CDS
AGGGATTACCAACACCAAAA+GGG 0.583936 tig0026434:+19138 Msa1429070:CDS
TGATGAACTTGTGAATGAAG+TGG 0.585794 tig0026434:+19070 Msa1429070:CDS
ACACCGTCTGCGAAACAAAG+AGG 0.595726 tig0026434:+17999 Msa1429070:CDS
ACAAATGATTCACCAATTGT+GGG 0.597784 tig0026434:+17954 Msa1429070:CDS
CAACAATGATGAAGATGATG+TGG 0.602585 tig0026434:+18869 Msa1429070:CDS
AGTGAAGACCCTTATGCAGA+TGG 0.608040 tig0026434:+18073 Msa1429070:CDS
GGGCTTGATGAACTGTGTGA+AGG 0.612048 tig0026434:+18969 Msa1429070:CDS
CATTAGAGTGAATGAAAAGG+TGG 0.614379 tig0026434:+19001 Msa1429070:CDS
TGCACCTCTGAGGTGACAGA+AGG 0.618247 tig0026434:+18780 Msa1429070:CDS
TTACTGACTTGAAAGTGGAA+TGG 0.620132 tig0026434:-17709 None:intergenic
ATCCTGGTGTGTTCTTCACA+CGG 0.624024 tig0026434:-18025 None:intergenic
CAATGATGAAGATGATGTGG+AGG 0.630227 tig0026434:+18872 Msa1429070:CDS
ACTTCCTTCTGTCACCTCAG+AGG 0.635704 tig0026434:-18784 None:intergenic
TGTGGAGGAAGAAATGGCTG+AGG 0.640763 tig0026434:+18887 Msa1429070:CDS
ACTTGAAAGTGGAATGGTGT+TGG 0.644715 tig0026434:-17703 None:intergenic
GATCTGGTGAAGCTTTGCTG+AGG 0.645257 tig0026434:+18045 Msa1429070:CDS
AGCCGTGTGAAGAACACACC+AGG 0.662563 tig0026434:+18023 Msa1429070:CDS
ATCAGAAGAATGCACCTCTG+AGG 0.671388 tig0026434:+18770 Msa1429070:CDS
TCTGGTGAAGCTTTGCTGAG+GGG 0.673835 tig0026434:+18047 Msa1429070:CDS
AATTTGCTGGAAAACACACA+AGG 0.675885 tig0026434:+19030 Msa1429070:CDS
ATGAGAGACCACAATTCCTG+TGG 0.679256 tig0026434:+19296 Msa1429070:three_prime_UTR
TGAACTTGTGAATGAAGTGG+AGG 0.693057 tig0026434:+19073 Msa1429070:CDS
TGAGGTGACAGAAGGAAGTG+TGG 0.713802 tig0026434:+18788 Msa1429070:CDS
CAGGTGGTGAAAATGGACCA+AGG 0.731969 tig0026434:+18684 Msa1429070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTAAATTTATATTTTTA+TGG + tig0026434:17751-17770 Msa1429070:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + tig0026434:18357-18376 Msa1429070:intron 10.0%
!!! CATGTAAATTTATATTTTTA+TGG + tig0026434:17751-17770 Msa1429070:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + tig0026434:18357-18376 Msa1429070:intron 10.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - tig0026434:17795-17814 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTTTGC+AGG + tig0026434:17861-17880 Msa1429070:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - tig0026434:18509-18528 None:intergenic 15.0%
!!! TTTTATTAAGTATTTGGAAT+TGG - tig0026434:19334-19353 None:intergenic 15.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - tig0026434:17795-17814 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTTTGC+AGG + tig0026434:17861-17880 Msa1429070:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - tig0026434:18509-18528 None:intergenic 15.0%
!!! TTTTATTAAGTATTTGGAAT+TGG - tig0026434:19334-19353 None:intergenic 15.0%
!! AAACATCTTGAAAAAAATTC+TGG + tig0026434:17797-17816 Msa1429070:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + tig0026434:17798-17817 Msa1429070:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - tig0026434:18335-18354 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + tig0026434:18475-18494 Msa1429070:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + tig0026434:18483-18502 Msa1429070:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + tig0026434:18661-18680 Msa1429070:intron 20.0%
!! AAAAAGAAGAAGATTATGAA+GGG + tig0026434:18949-18968 Msa1429070:CDS 20.0%
!!! GGAACATTTTATTAAGTATT+TGG - tig0026434:19340-19359 None:intergenic 20.0%
!! AAACATCTTGAAAAAAATTC+TGG + tig0026434:17797-17816 Msa1429070:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + tig0026434:17798-17817 Msa1429070:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - tig0026434:18335-18354 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + tig0026434:18475-18494 Msa1429070:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + tig0026434:18483-18502 Msa1429070:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + tig0026434:18661-18680 Msa1429070:intron 20.0%
!! AAAAAGAAGAAGATTATGAA+GGG + tig0026434:18949-18968 Msa1429070:CDS 20.0%
!!! GGAACATTTTATTAAGTATT+TGG - tig0026434:19340-19359 None:intergenic 20.0%
! ATAATGAAAAGAAGTGAAGA+AGG - tig0026434:17569-17588 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - tig0026434:17717-17736 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - tig0026434:18207-18226 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + tig0026434:18275-18294 Msa1429070:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - tig0026434:18302-18321 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - tig0026434:18303-18322 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - tig0026434:18541-18560 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + tig0026434:18541-18560 Msa1429070:intron 25.0%
! GAAAAAGAAGAAGATTATGA+AGG + tig0026434:18948-18967 Msa1429070:CDS 25.0%
! ATAATGAAAAGAAGTGAAGA+AGG - tig0026434:17569-17588 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - tig0026434:17717-17736 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - tig0026434:18207-18226 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + tig0026434:18275-18294 Msa1429070:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - tig0026434:18302-18321 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - tig0026434:18303-18322 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - tig0026434:18541-18560 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + tig0026434:18541-18560 Msa1429070:intron 25.0%
! GAAAAAGAAGAAGATTATGA+AGG + tig0026434:18948-18967 Msa1429070:CDS 25.0%
CAATCTTCAATCACTTTCAA+TGG + tig0026434:17653-17672 Msa1429070:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + tig0026434:17893-17912 Msa1429070:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + tig0026434:17894-17913 Msa1429070:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + tig0026434:17954-17973 Msa1429070:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + tig0026434:18163-18182 Msa1429070:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - tig0026434:18201-18220 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - tig0026434:18202-18221 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + tig0026434:18601-18620 Msa1429070:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + tig0026434:18998-19017 Msa1429070:CDS 30.0%
CAATCTTCAATCACTTTCAA+TGG + tig0026434:17653-17672 Msa1429070:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + tig0026434:17893-17912 Msa1429070:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + tig0026434:17894-17913 Msa1429070:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + tig0026434:17954-17973 Msa1429070:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + tig0026434:18163-18182 Msa1429070:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - tig0026434:18201-18220 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - tig0026434:18202-18221 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + tig0026434:18601-18620 Msa1429070:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + tig0026434:18998-19017 Msa1429070:CDS 30.0%
!! TTACTGACTTGAAAGTGGAA+TGG - tig0026434:17712-17731 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + tig0026434:17953-17972 Msa1429070:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - tig0026434:18084-18103 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + tig0026434:18616-18635 Msa1429070:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + tig0026434:18665-18684 Msa1429070:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - tig0026434:18704-18723 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - tig0026434:18745-18764 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + tig0026434:18826-18845 Msa1429070:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + tig0026434:18869-18888 Msa1429070:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + tig0026434:19001-19020 Msa1429070:CDS 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - tig0026434:19029-19048 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + tig0026434:19030-19049 Msa1429070:CDS 35.0%
TGATGAACTTGTGAATGAAG+TGG + tig0026434:19070-19089 Msa1429070:CDS 35.0%
ACCTAATGTGTTGCATTTGA+AGG + tig0026434:19118-19137 Msa1429070:CDS 35.0%
CCTAATGTGTTGCATTTGAA+GGG + tig0026434:19119-19138 Msa1429070:CDS 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - tig0026434:19155-19174 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + tig0026434:19160-19179 Msa1429070:CDS 35.0%
TCTGCTAACTAAGTGATTCA+TGG + tig0026434:19229-19248 Msa1429070:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - tig0026434:19315-19334 None:intergenic 35.0%
!! TTACTGACTTGAAAGTGGAA+TGG - tig0026434:17712-17731 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + tig0026434:17953-17972 Msa1429070:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - tig0026434:18084-18103 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + tig0026434:18616-18635 Msa1429070:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + tig0026434:18665-18684 Msa1429070:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - tig0026434:18704-18723 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - tig0026434:18745-18764 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + tig0026434:18826-18845 Msa1429070:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + tig0026434:18869-18888 Msa1429070:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + tig0026434:19001-19020 Msa1429070:CDS 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - tig0026434:19029-19048 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + tig0026434:19030-19049 Msa1429070:CDS 35.0%
TGATGAACTTGTGAATGAAG+TGG + tig0026434:19070-19089 Msa1429070:CDS 35.0%
ACCTAATGTGTTGCATTTGA+AGG + tig0026434:19118-19137 Msa1429070:CDS 35.0%
CCTAATGTGTTGCATTTGAA+GGG + tig0026434:19119-19138 Msa1429070:CDS 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - tig0026434:19155-19174 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + tig0026434:19160-19179 Msa1429070:CDS 35.0%
TCTGCTAACTAAGTGATTCA+TGG + tig0026434:19229-19248 Msa1429070:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - tig0026434:19315-19334 None:intergenic 35.0%
TGAGAGTTGTTGTGGATGAT+GGG - tig0026434:17683-17702 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - tig0026434:17706-17725 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + tig0026434:17926-17945 Msa1429070:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - tig0026434:18085-18104 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + tig0026434:18085-18104 Msa1429070:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - tig0026434:18116-18135 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + tig0026434:18113-18132 Msa1429070:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + tig0026434:18668-18687 Msa1429070:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - tig0026434:18746-18765 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + tig0026434:18872-18891 Msa1429070:CDS 40.0%
AGATGATGTGGAGGAAGAAA+TGG + tig0026434:18881-18900 Msa1429070:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + tig0026434:19017-19036 Msa1429070:CDS 40.0%
TGAACTTGTGAATGAAGTGG+AGG + tig0026434:19073-19092 Msa1429070:CDS 40.0%
CCCTTCAAATGCAACACATT+AGG - tig0026434:19122-19141 None:intergenic 40.0%
AAGGGATTACCAACACCAAA+AGG + tig0026434:19137-19156 Msa1429070:CDS 40.0%
AGGGATTACCAACACCAAAA+GGG + tig0026434:19138-19157 Msa1429070:CDS 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - tig0026434:19149-19168 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + tig0026434:19163-19182 Msa1429070:CDS 40.0%
!! TCGTTTTTCTGAGGAGGAAA+AGG + tig0026434:19169-19188 Msa1429070:CDS 40.0%
!! TTTTCTGAGGAGGAAAAGGA+AGG + tig0026434:19173-19192 Msa1429070:CDS 40.0%
TTTGAAGACCACAGGAATTG+TGG - tig0026434:19307-19326 None:intergenic 40.0%
TGAGAGTTGTTGTGGATGAT+GGG - tig0026434:17683-17702 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - tig0026434:17706-17725 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + tig0026434:17926-17945 Msa1429070:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - tig0026434:18085-18104 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + tig0026434:18085-18104 Msa1429070:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - tig0026434:18116-18135 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + tig0026434:18113-18132 Msa1429070:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + tig0026434:18668-18687 Msa1429070:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - tig0026434:18746-18765 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + tig0026434:18872-18891 Msa1429070:CDS 40.0%
AGATGATGTGGAGGAAGAAA+TGG + tig0026434:18881-18900 Msa1429070:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + tig0026434:19017-19036 Msa1429070:CDS 40.0%
TGAACTTGTGAATGAAGTGG+AGG + tig0026434:19073-19092 Msa1429070:CDS 40.0%
CCCTTCAAATGCAACACATT+AGG - tig0026434:19122-19141 None:intergenic 40.0%
AAGGGATTACCAACACCAAA+AGG + tig0026434:19137-19156 Msa1429070:CDS 40.0%
AGGGATTACCAACACCAAAA+GGG + tig0026434:19138-19157 Msa1429070:CDS 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - tig0026434:19149-19168 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + tig0026434:19163-19182 Msa1429070:CDS 40.0%
!! TCGTTTTTCTGAGGAGGAAA+AGG + tig0026434:19169-19188 Msa1429070:CDS 40.0%
!! TTTTCTGAGGAGGAAAAGGA+AGG + tig0026434:19173-19192 Msa1429070:CDS 40.0%
TTTGAAGACCACAGGAATTG+TGG - tig0026434:19307-19326 None:intergenic 40.0%
GAGAGTTGTTGTGGATGATG+GGG - tig0026434:17682-17701 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - tig0026434:17684-17703 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - tig0026434:18005-18024 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - tig0026434:18028-18047 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + tig0026434:18046-18065 Msa1429070:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + tig0026434:18073-18092 Msa1429070:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + tig0026434:18677-18696 Msa1429070:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + tig0026434:18770-18789 Msa1429070:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + tig0026434:18970-18989 Msa1429070:CDS 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + tig0026434:19077-19096 Msa1429070:CDS 45.0%
ATGAGAGACCACAATTCCTG+TGG + tig0026434:19296-19315 Msa1429070:three_prime_UTR 45.0%
GAGAGTTGTTGTGGATGATG+GGG - tig0026434:17682-17701 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - tig0026434:17684-17703 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - tig0026434:18005-18024 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - tig0026434:18028-18047 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + tig0026434:18046-18065 Msa1429070:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + tig0026434:18073-18092 Msa1429070:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + tig0026434:18677-18696 Msa1429070:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + tig0026434:18770-18789 Msa1429070:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + tig0026434:18970-18989 Msa1429070:CDS 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + tig0026434:19077-19096 Msa1429070:CDS 45.0%
ATGAGAGACCACAATTCCTG+TGG + tig0026434:19296-19315 Msa1429070:three_prime_UTR 45.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - tig0026434:17691-17710 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + tig0026434:17963-17982 Msa1429070:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + tig0026434:17999-18018 Msa1429070:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + tig0026434:18029-18048 Msa1429070:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - tig0026434:18044-18063 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + tig0026434:18045-18064 Msa1429070:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + tig0026434:18047-18066 Msa1429070:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + tig0026434:18684-18703 Msa1429070:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - tig0026434:18739-18758 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - tig0026434:18787-18806 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + tig0026434:18788-18807 Msa1429070:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + tig0026434:18792-18811 Msa1429070:CDS 50.0%
TGTGGAGGAAGAAATGGCTG+AGG + tig0026434:18887-18906 Msa1429070:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + tig0026434:18969-18988 Msa1429070:CDS 50.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - tig0026434:17691-17710 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + tig0026434:17963-17982 Msa1429070:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + tig0026434:17999-18018 Msa1429070:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + tig0026434:18029-18048 Msa1429070:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - tig0026434:18044-18063 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + tig0026434:18045-18064 Msa1429070:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + tig0026434:18047-18066 Msa1429070:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + tig0026434:18684-18703 Msa1429070:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - tig0026434:18739-18758 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - tig0026434:18787-18806 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + tig0026434:18788-18807 Msa1429070:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + tig0026434:18792-18811 Msa1429070:CDS 50.0%
TGTGGAGGAAGAAATGGCTG+AGG + tig0026434:18887-18906 Msa1429070:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + tig0026434:18969-18988 Msa1429070:CDS 50.0%
CCACCAGCAAGACCCACAAT+TGG - tig0026434:17969-17988 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + tig0026434:17966-17985 Msa1429070:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + tig0026434:18023-18042 Msa1429070:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + tig0026434:18780-18799 Msa1429070:CDS 55.0%
CCACCAGCAAGACCCACAAT+TGG - tig0026434:17969-17988 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + tig0026434:17966-17985 Msa1429070:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + tig0026434:18023-18042 Msa1429070:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + tig0026434:18780-18799 Msa1429070:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0026434 gene 17563 19374 17563 ID=Msa1429070;Name=Msa1429070
tig0026434 mRNA 17563 19374 17563 ID=Msa1429070-mRNA-1;Parent=Msa1429070;Name=Msa1429070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=109|1|1|1|1|1|3|163|292
tig0026434 exon 17563 17723 17563 ID=Msa1429070-mRNA-1:exon:6284;Parent=Msa1429070-mRNA-1
tig0026434 exon 17883 18184 17883 ID=Msa1429070-mRNA-1:exon:6285;Parent=Msa1429070-mRNA-1
tig0026434 exon 18687 19374 18687 ID=Msa1429070-mRNA-1:exon:6286;Parent=Msa1429070-mRNA-1
tig0026434 five_prime_UTR 17563 17671 17563 ID=Msa1429070-mRNA-1:five_prime_utr;Parent=Msa1429070-mRNA-1
tig0026434 CDS 17672 17723 17672 ID=Msa1429070-mRNA-1:cds;Parent=Msa1429070-mRNA-1
tig0026434 CDS 17883 18184 17883 ID=Msa1429070-mRNA-1:cds;Parent=Msa1429070-mRNA-1
tig0026434 CDS 18687 19211 18687 ID=Msa1429070-mRNA-1:cds;Parent=Msa1429070-mRNA-1
tig0026434 three_prime_UTR 19212 19374 19212 ID=Msa1429070-mRNA-1:three_prime_utr;Parent=Msa1429070-mRNA-1
Gene Sequence

>Msa1429070

ATGGAAACCCCATCATCCACAACAACTCTCACCAACACCATTCCACTTTCAAGAAAATTTGAAGATTCTGTGTCAAAATCAAAGGGTCAACAAAATCAAGATCGATGTGCATTGATGGACATGACAAATGATTCACCAATTGTGGGTCTTGCTGGTGGAAATCTCGAGACACCGTCTGCGAAACAAAGAGGTAGCCGTGTGAAGAACACACCAGGATCTGGTGAAGCTTTGCTGAGGGGACAAGTGAAGACCCTTATGCAGATGGTTGAAGAAGAGGCTTCTCCTCAAATTCAGAGTCTTTCTGGTAGTGTCAATAACAATGCTTCTGTTGTTCAACAACAATCAATTTCTCAGGTGGTGAAAATGGACCAAGGTAGCTGTGAATATGAAAAGTGTGAGATAACCAAGTCCCTTGACTTCTCAGAGAAATCTCAAGTATCAGAAGAATGCACCTCTGAGGTGACAGAAGGAAGTGTGGTTGGTAGCTGCAGCATAGATGAAGATGCTTCTATCTGGTCAATGCAAGTCAACTCATGCAACAATGATGAAGATGATGTGGAGGAAGAAATGGCTGAGGAAGATGAAGAAGAAGAAGAAGAAGACTACTATGATGTTGAAAAAGAAGAAGATTATGAAGGGCTTGATGAACTGTGTGAAGGGCTAAACAACATTAGAGTGAATGAAAAGGTGGTTCCAAAATTTGCTGGAAAACACACAAGGTTTGTTTACAACAGTGATGATGAACTTGTGAATGAAGTGGAGGATGGAAGTGTGAATGCTGATTCACCTAATGTGTTGCATTTGAAGGGATTACCAACACCAAAAGGGAAACATCTTCGTTTTTCTGAGGAGGAAAAGGAAGGAAAATCTGCTAAGTGA

Protein sequence

>Msa1429070

METPSSTTTLTNTIPLSRKFEDSVSKSKGQQNQDRCALMDMTNDSPIVGLAGGNLETPSAKQRGSRVKNTPGSGEALLRGQVKTLMQMVEEEASPQIQSLSGSVNNNASVVQQQSISQVVKMDQGSCEYEKCEITKSLDFSEKSQVSEECTSEVTEGSVVGSCSIDEDASIWSMQVNSCNNDEDDVEEEMAEEDEEEEEEDYYDVEKEEDYEGLDELCEGLNNIRVNEKVVPKFAGKHTRFVYNSDDELVNEVEDGSVNADSPNVLHLKGLPTPKGKHLRFSEEEKEGKSAK*