AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384150 MtrunA17_Chr5g0405401 96.685 181 5 1 1 181 1 180 3.94e-123 350
Msa1384150 MtrunA17_Chr8g0371981 48.536 239 54 12 1 181 1 228 3.96e-44 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384150 AT5G66230.1 38.655 238 77 12 1 178 1 229 1.89e-25 101
Msa1384150 AT5G66230.2 37.815 238 79 12 1 178 217 445 3.03e-23 97.1
Msa1384150 AT3G51230.1 46.847 111 34 5 1 91 1 106 5.92e-19 81.3

Find 66 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTTAAAACTTTAAT+TGG 0.102517 tig0020645:-28480 None:intergenic
CCTCAAATTCAGAGTCTTTC+TGG 0.117151 tig0020645:+27228 Msa1384150:CDS
AAACGAAGATGTTTCCCTTT+TGG 0.292026 tig0020645:-28261 None:intergenic
CAATCTTCAATCACTTTCAA+TGG 0.312934 tig0020645:+26767 Msa1384150:exon
TCACCAATTGTGGGTCTTGC+TGG 0.314090 tig0020645:+27078 Msa1384150:CDS
GTGAGAGTTGTTGTGGATGA+TGG 0.320301 tig0020645:-26795 None:intergenic
ATGATGGCAGGTGGTGAAAA+TGG 0.338531 tig0020645:+27792 Msa1384150:intron
TCAAGATCGATGTGCATTGA+TGG 0.354068 tig0020645:+27041 Msa1384150:CDS
CTCTGAGAAGTCAAGGGACT+TGG 0.360313 tig0020645:-27851 None:intergenic
ACCTAATGTGTTGCATTTGA+AGG 0.369587 tig0020645:+28228 Msa1384150:three_prime_UTR
CCAGAAAGACTCTGAATTTG+AGG 0.370802 tig0020645:-27228 None:intergenic
TAGATGAAGATGCTTCTATC+TGG 0.397277 tig0020645:+27941 Msa1384150:CDS
CTTCTTCAACCATCTGCATA+AGG 0.410420 tig0020645:-27197 None:intergenic
AAGTTCTGCTAAGTGATTCA+TGG 0.413899 tig0020645:+28334 Msa1384150:three_prime_UTR
AAGGTGGTTCCAAAATTTGC+TGG 0.416494 tig0020645:+28127 Msa1384150:three_prime_UTR
GAAGGATTACCAACACCAAA+AGG 0.424776 tig0020645:+28246 Msa1384150:three_prime_UTR
TCAACAACAATCAATTTCTC+AGG 0.428450 tig0020645:+27278 Msa1384150:CDS
TGAGAGTTGTTGTGGATGAT+GGG 0.430806 tig0020645:-26794 None:intergenic
GACAAATGATTCACCAATTG+TGG 0.435186 tig0020645:+27068 Msa1384150:CDS
TCCTTCAAATGCAACACATT+AGG 0.453335 tig0020645:-28229 None:intergenic
TTCTTCAACCATCTGCATAA+GGG 0.467939 tig0020645:-27196 None:intergenic
AGCAAAGCTTCACCAGATCC+TGG 0.479015 tig0020645:-27156 None:intergenic
ATAATGAAAAGAAGTGAAGA+AGG 0.485936 tig0020645:-26680 None:intergenic
CCACCAGCAAGACCCACAAT+TGG 0.497063 tig0020645:-27081 None:intergenic
GTGAAGAACACACCAGGATC+TGG 0.501240 tig0020645:+27144 Msa1384150:CDS
GAGATTTCTCTGAGAAGTCA+AGG 0.515939 tig0020645:-27858 None:intergenic
TATGCAGATGGTTGAAGAAG+AGG 0.527703 tig0020645:+27200 Msa1384150:CDS
TTGGAATATTTGAAGACCAC+AGG 0.529441 tig0020645:-28434 None:intergenic
AGATTCTGTGTCAAAATCAA+AGG 0.534978 tig0020645:+27008 Msa1384150:CDS
AAGGATTACCAACACCAAAA+GGG 0.537076 tig0020645:+28247 Msa1384150:three_prime_UTR
TTTGAAGACCACAGGAATTG+TGG 0.545785 tig0020645:-28426 None:intergenic
GATTCTGTGTCAAAATCAAA+GGG 0.549781 tig0020645:+27009 Msa1384150:CDS
CTACCTCTTTGTTTCGCAGA+CGG 0.551296 tig0020645:-27117 None:intergenic
GTGACAGAAGGAAGTGTGGT+TGG 0.552956 tig0020645:+27907 Msa1384150:CDS
ATCTGGTGAAGCTTTGCTGA+GGG 0.555103 tig0020645:+27161 Msa1384150:CDS
GAGAGTTGTTGTGGATGATG+GGG 0.555778 tig0020645:-26793 None:intergenic
CAACATTAGAGTGAATGAAA+AGG 0.556085 tig0020645:+28108 Msa1384150:three_prime_UTR
CTTGTGAATGAAGTGGAGGA+TGG 0.558010 tig0020645:+28187 Msa1384150:three_prime_UTR
AGATTTCTCTGAGAAGTCAA+GGG 0.560895 tig0020645:-27857 None:intergenic
GGTGTTGGTGAGAGTTGTTG+TGG 0.563322 tig0020645:-26802 None:intergenic
CCAATTGTGGGTCTTGCTGG+TGG 0.574159 tig0020645:+27081 Msa1384150:CDS
TTTCATATTCACAGCTACCT+TGG 0.574412 tig0020645:-27816 None:intergenic
GGCTTGATGAACTGTGTGAA+GGG 0.581098 tig0020645:+28080 Msa1384150:three_prime_UTR
TGATGAACTTGTGAATGAAG+TGG 0.585794 tig0020645:+28180 Msa1384150:three_prime_UTR
ACACCGTCTGCGAAACAAAG+AGG 0.595726 tig0020645:+27114 Msa1384150:CDS
ACAAATGATTCACCAATTGT+GGG 0.597784 tig0020645:+27069 Msa1384150:CDS
CAACAATGATGAAGATGATG+TGG 0.602585 tig0020645:+27984 Msa1384150:CDS
AGTGAAGACCCTTATGCAGA+TGG 0.608040 tig0020645:+27188 Msa1384150:CDS
TGTGGAGGAAGAAATAGCTG+AGG 0.610254 tig0020645:+28002 Msa1384150:CDS
GGGCTTGATGAACTGTGTGA+AGG 0.612048 tig0020645:+28079 Msa1384150:three_prime_UTR
CATTAGAGTGAATGAAAAGG+TGG 0.614379 tig0020645:+28111 Msa1384150:three_prime_UTR
TGCACCTCTGAGGTGACAGA+AGG 0.618247 tig0020645:+27895 Msa1384150:CDS
TTACTGACTTGAAAGTGGAA+TGG 0.620132 tig0020645:-26823 None:intergenic
ATCCTGGTGTGTTCTTCACA+CGG 0.624024 tig0020645:-27140 None:intergenic
CAATGATGAAGATGATGTGG+AGG 0.630227 tig0020645:+27987 Msa1384150:CDS
ACTTCCTTCTGTCACCTCAG+AGG 0.635704 tig0020645:-27899 None:intergenic
ACTTGAAAGTGGAATGGTGT+TGG 0.644715 tig0020645:-26817 None:intergenic
GATCTGGTGAAGCTTTGCTG+AGG 0.645257 tig0020645:+27160 Msa1384150:CDS
AGCCGTGTGAAGAACACACC+AGG 0.662563 tig0020645:+27138 Msa1384150:CDS
ATCAGAAGAATGCACCTCTG+AGG 0.671388 tig0020645:+27885 Msa1384150:CDS
TCTGGTGAAGCTTTGCTGAG+GGG 0.673835 tig0020645:+27162 Msa1384150:CDS
AATTTGCTGGAAAACACACA+AGG 0.675885 tig0020645:+28140 Msa1384150:three_prime_UTR
TGAACTTGTGAATGAAGTGG+AGG 0.693057 tig0020645:+28183 Msa1384150:three_prime_UTR
ATGAGAGACCACAATTCCTG+TGG 0.704182 tig0020645:+28418 Msa1384150:three_prime_UTR
TGAGGTGACAGAAGGAAGTG+TGG 0.713802 tig0020645:+27903 Msa1384150:CDS
CAGGTGGTGAAAATGGACCA+AGG 0.731969 tig0020645:+27799 Msa1384150:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTAAATTTATATTTTTA+TGG + tig0020645:26865-26884 Msa1384150:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + tig0020645:27472-27491 Msa1384150:intron 10.0%
!!! CATGTAAATTTATATTTTTA+TGG + tig0020645:26865-26884 Msa1384150:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + tig0020645:27472-27491 Msa1384150:intron 10.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - tig0020645:26909-26928 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTTTTGC+AGG + tig0020645:26976-26995 Msa1384150:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - tig0020645:27624-27643 None:intergenic 15.0%
!! TTGAAAAAGAAAAATTATGA+AGG + tig0020645:28058-28077 Msa1384150:CDS 15.0%
!! TGAAAAAGAAAAATTATGAA+GGG + tig0020645:28059-28078 Msa1384150:exon 15.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - tig0020645:26909-26928 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTTTTGC+AGG + tig0020645:26976-26995 Msa1384150:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - tig0020645:27624-27643 None:intergenic 15.0%
!! TTGAAAAAGAAAAATTATGA+AGG + tig0020645:28058-28077 Msa1384150:CDS 15.0%
!! TGAAAAAGAAAAATTATGAA+GGG + tig0020645:28059-28078 Msa1384150:exon 15.0%
!! AAACATCTTGAAAAAAATTC+TGG + tig0020645:26911-26930 Msa1384150:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + tig0020645:26912-26931 Msa1384150:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - tig0020645:27450-27469 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + tig0020645:27590-27609 Msa1384150:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + tig0020645:27598-27617 Msa1384150:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + tig0020645:27776-27795 Msa1384150:intron 20.0%
!!! TTTTATTAAGTATTCGGAAT+TGG - tig0020645:28456-28475 None:intergenic 20.0%
!!! GGAACATTTTATTAAGTATT+CGG - tig0020645:28462-28481 None:intergenic 20.0%
!! AAACATCTTGAAAAAAATTC+TGG + tig0020645:26911-26930 Msa1384150:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + tig0020645:26912-26931 Msa1384150:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - tig0020645:27450-27469 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + tig0020645:27590-27609 Msa1384150:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + tig0020645:27598-27617 Msa1384150:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + tig0020645:27776-27795 Msa1384150:intron 20.0%
!!! TTTTATTAAGTATTCGGAAT+TGG - tig0020645:28456-28475 None:intergenic 20.0%
!!! GGAACATTTTATTAAGTATT+CGG - tig0020645:28462-28481 None:intergenic 20.0%
! ATAATGAAAAGAAGTGAAGA+AGG - tig0020645:26683-26702 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - tig0020645:26831-26850 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - tig0020645:27322-27341 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + tig0020645:27390-27409 Msa1384150:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - tig0020645:27417-27436 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - tig0020645:27418-27437 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - tig0020645:27656-27675 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + tig0020645:27656-27675 Msa1384150:intron 25.0%
! ATAATGAAAAGAAGTGAAGA+AGG - tig0020645:26683-26702 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - tig0020645:26831-26850 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - tig0020645:27322-27341 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + tig0020645:27390-27409 Msa1384150:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - tig0020645:27417-27436 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - tig0020645:27418-27437 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - tig0020645:27656-27675 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + tig0020645:27656-27675 Msa1384150:intron 25.0%
CAATCTTCAATCACTTTCAA+TGG + tig0020645:26767-26786 Msa1384150:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + tig0020645:27008-27027 Msa1384150:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + tig0020645:27009-27028 Msa1384150:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + tig0020645:27069-27088 Msa1384150:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + tig0020645:27278-27297 Msa1384150:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - tig0020645:27316-27335 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - tig0020645:27317-27336 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + tig0020645:27716-27735 Msa1384150:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + tig0020645:28108-28127 Msa1384150:three_prime_UTR 30.0%
CAATCTTCAATCACTTTCAA+TGG + tig0020645:26767-26786 Msa1384150:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + tig0020645:27008-27027 Msa1384150:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + tig0020645:27009-27028 Msa1384150:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + tig0020645:27069-27088 Msa1384150:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + tig0020645:27278-27297 Msa1384150:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - tig0020645:27316-27335 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - tig0020645:27317-27336 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + tig0020645:27716-27735 Msa1384150:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + tig0020645:28108-28127 Msa1384150:three_prime_UTR 30.0%
!! TTACTGACTTGAAAGTGGAA+TGG - tig0020645:26826-26845 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + tig0020645:27068-27087 Msa1384150:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - tig0020645:27199-27218 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + tig0020645:27731-27750 Msa1384150:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + tig0020645:27780-27799 Msa1384150:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - tig0020645:27819-27838 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - tig0020645:27860-27879 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + tig0020645:27941-27960 Msa1384150:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + tig0020645:27984-28003 Msa1384150:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + tig0020645:28111-28130 Msa1384150:three_prime_UTR 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - tig0020645:28139-28158 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + tig0020645:28140-28159 Msa1384150:three_prime_UTR 35.0%
TGATGAACTTGTGAATGAAG+TGG + tig0020645:28180-28199 Msa1384150:three_prime_UTR 35.0%
ACCTAATGTGTTGCATTTGA+AGG + tig0020645:28228-28247 Msa1384150:three_prime_UTR 35.0%
TCCTTCAAATGCAACACATT+AGG - tig0020645:28232-28251 None:intergenic 35.0%
AAGGATTACCAACACCAAAA+GGG + tig0020645:28247-28266 Msa1384150:three_prime_UTR 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - tig0020645:28264-28283 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + tig0020645:28269-28288 Msa1384150:three_prime_UTR 35.0%
AAGTTCTGCTAAGTGATTCA+TGG + tig0020645:28334-28353 Msa1384150:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - tig0020645:28437-28456 None:intergenic 35.0%
!! TTACTGACTTGAAAGTGGAA+TGG - tig0020645:26826-26845 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + tig0020645:27068-27087 Msa1384150:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - tig0020645:27199-27218 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + tig0020645:27731-27750 Msa1384150:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + tig0020645:27780-27799 Msa1384150:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - tig0020645:27819-27838 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - tig0020645:27860-27879 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + tig0020645:27941-27960 Msa1384150:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + tig0020645:27984-28003 Msa1384150:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + tig0020645:28111-28130 Msa1384150:three_prime_UTR 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - tig0020645:28139-28158 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + tig0020645:28140-28159 Msa1384150:three_prime_UTR 35.0%
TGATGAACTTGTGAATGAAG+TGG + tig0020645:28180-28199 Msa1384150:three_prime_UTR 35.0%
ACCTAATGTGTTGCATTTGA+AGG + tig0020645:28228-28247 Msa1384150:three_prime_UTR 35.0%
TCCTTCAAATGCAACACATT+AGG - tig0020645:28232-28251 None:intergenic 35.0%
AAGGATTACCAACACCAAAA+GGG + tig0020645:28247-28266 Msa1384150:three_prime_UTR 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - tig0020645:28264-28283 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + tig0020645:28269-28288 Msa1384150:three_prime_UTR 35.0%
AAGTTCTGCTAAGTGATTCA+TGG + tig0020645:28334-28353 Msa1384150:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - tig0020645:28437-28456 None:intergenic 35.0%
TGAGAGTTGTTGTGGATGAT+GGG - tig0020645:26797-26816 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - tig0020645:26820-26839 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + tig0020645:27041-27060 Msa1384150:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - tig0020645:27200-27219 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + tig0020645:27200-27219 Msa1384150:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - tig0020645:27231-27250 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + tig0020645:27228-27247 Msa1384150:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + tig0020645:27783-27802 Msa1384150:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - tig0020645:27861-27880 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + tig0020645:27987-28006 Msa1384150:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + tig0020645:28127-28146 Msa1384150:three_prime_UTR 40.0%
TGAACTTGTGAATGAAGTGG+AGG + tig0020645:28183-28202 Msa1384150:three_prime_UTR 40.0%
GAAGGATTACCAACACCAAA+AGG + tig0020645:28246-28265 Msa1384150:three_prime_UTR 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - tig0020645:28258-28277 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + tig0020645:28272-28291 Msa1384150:three_prime_UTR 40.0%
TTTGAAGACCACAGGAATTG+TGG - tig0020645:28429-28448 None:intergenic 40.0%
TGAGAGTTGTTGTGGATGAT+GGG - tig0020645:26797-26816 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - tig0020645:26820-26839 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + tig0020645:27041-27060 Msa1384150:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - tig0020645:27200-27219 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + tig0020645:27200-27219 Msa1384150:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - tig0020645:27231-27250 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + tig0020645:27228-27247 Msa1384150:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + tig0020645:27783-27802 Msa1384150:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - tig0020645:27861-27880 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + tig0020645:27987-28006 Msa1384150:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + tig0020645:28127-28146 Msa1384150:three_prime_UTR 40.0%
TGAACTTGTGAATGAAGTGG+AGG + tig0020645:28183-28202 Msa1384150:three_prime_UTR 40.0%
GAAGGATTACCAACACCAAA+AGG + tig0020645:28246-28265 Msa1384150:three_prime_UTR 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - tig0020645:28258-28277 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + tig0020645:28272-28291 Msa1384150:three_prime_UTR 40.0%
TTTGAAGACCACAGGAATTG+TGG - tig0020645:28429-28448 None:intergenic 40.0%
GAGAGTTGTTGTGGATGATG+GGG - tig0020645:26796-26815 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - tig0020645:26798-26817 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - tig0020645:27120-27139 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - tig0020645:27143-27162 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + tig0020645:27161-27180 Msa1384150:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + tig0020645:27188-27207 Msa1384150:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + tig0020645:27792-27811 Msa1384150:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + tig0020645:27885-27904 Msa1384150:CDS 45.0%
TGTGGAGGAAGAAATAGCTG+AGG + tig0020645:28002-28021 Msa1384150:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + tig0020645:28080-28099 Msa1384150:three_prime_UTR 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + tig0020645:28187-28206 Msa1384150:three_prime_UTR 45.0%
!! TCGTTTTTCTGAGGAGGAAG+AGG + tig0020645:28278-28297 Msa1384150:three_prime_UTR 45.0%
!! TTTTCTGAGGAGGAAGAGGA+AGG + tig0020645:28282-28301 Msa1384150:three_prime_UTR 45.0%
ATGAGAGACCACAATTCCTG+TGG + tig0020645:28418-28437 Msa1384150:three_prime_UTR 45.0%
GAGAGTTGTTGTGGATGATG+GGG - tig0020645:26796-26815 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - tig0020645:26798-26817 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - tig0020645:27120-27139 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - tig0020645:27143-27162 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + tig0020645:27161-27180 Msa1384150:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + tig0020645:27188-27207 Msa1384150:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + tig0020645:27792-27811 Msa1384150:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + tig0020645:27885-27904 Msa1384150:CDS 45.0%
TGTGGAGGAAGAAATAGCTG+AGG + tig0020645:28002-28021 Msa1384150:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + tig0020645:28080-28099 Msa1384150:three_prime_UTR 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + tig0020645:28187-28206 Msa1384150:three_prime_UTR 45.0%
!! TCGTTTTTCTGAGGAGGAAG+AGG + tig0020645:28278-28297 Msa1384150:three_prime_UTR 45.0%
!! TTTTCTGAGGAGGAAGAGGA+AGG + tig0020645:28282-28301 Msa1384150:three_prime_UTR 45.0%
ATGAGAGACCACAATTCCTG+TGG + tig0020645:28418-28437 Msa1384150:three_prime_UTR 45.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - tig0020645:26805-26824 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + tig0020645:27078-27097 Msa1384150:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + tig0020645:27114-27133 Msa1384150:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + tig0020645:27144-27163 Msa1384150:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - tig0020645:27159-27178 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + tig0020645:27160-27179 Msa1384150:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + tig0020645:27162-27181 Msa1384150:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + tig0020645:27799-27818 Msa1384150:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - tig0020645:27854-27873 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - tig0020645:27902-27921 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + tig0020645:27903-27922 Msa1384150:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + tig0020645:27907-27926 Msa1384150:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + tig0020645:28079-28098 Msa1384150:three_prime_UTR 50.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - tig0020645:26805-26824 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + tig0020645:27078-27097 Msa1384150:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + tig0020645:27114-27133 Msa1384150:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + tig0020645:27144-27163 Msa1384150:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - tig0020645:27159-27178 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + tig0020645:27160-27179 Msa1384150:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + tig0020645:27162-27181 Msa1384150:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + tig0020645:27799-27818 Msa1384150:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - tig0020645:27854-27873 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - tig0020645:27902-27921 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + tig0020645:27903-27922 Msa1384150:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + tig0020645:27907-27926 Msa1384150:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + tig0020645:28079-28098 Msa1384150:three_prime_UTR 50.0%
CCACCAGCAAGACCCACAAT+TGG - tig0020645:27084-27103 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + tig0020645:27081-27100 Msa1384150:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + tig0020645:27138-27157 Msa1384150:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + tig0020645:27895-27914 Msa1384150:CDS 55.0%
CCACCAGCAAGACCCACAAT+TGG - tig0020645:27084-27103 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + tig0020645:27081-27100 Msa1384150:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + tig0020645:27138-27157 Msa1384150:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + tig0020645:27895-27914 Msa1384150:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0020645 gene 26677 28496 26677 ID=Msa1384150;Name=Msa1384150
tig0020645 mRNA 26677 28496 26677 ID=Msa1384150-mRNA-1;Parent=Msa1384150;Name=Msa1384150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109|1|1|1|1|1|3|419|209
tig0020645 exon 26677 26837 26677 ID=Msa1384150-mRNA-1:exon:8947;Parent=Msa1384150-mRNA-1
tig0020645 exon 26998 27299 26998 ID=Msa1384150-mRNA-1:exon:8948;Parent=Msa1384150-mRNA-1
tig0020645 exon 27802 28496 27802 ID=Msa1384150-mRNA-1:exon:8949;Parent=Msa1384150-mRNA-1
tig0020645 five_prime_UTR 26677 26785 26677 ID=Msa1384150-mRNA-1:five_prime_utr;Parent=Msa1384150-mRNA-1
tig0020645 CDS 26786 26837 26786 ID=Msa1384150-mRNA-1:cds;Parent=Msa1384150-mRNA-1
tig0020645 CDS 26998 27299 26998 ID=Msa1384150-mRNA-1:cds;Parent=Msa1384150-mRNA-1
tig0020645 CDS 27802 28077 27802 ID=Msa1384150-mRNA-1:cds;Parent=Msa1384150-mRNA-1
tig0020645 three_prime_UTR 28078 28496 28078 ID=Msa1384150-mRNA-1:three_prime_utr;Parent=Msa1384150-mRNA-1
Gene Sequence

>Msa1384150

ATGGAAACCCCATCATCCACAACAACTCTCACCAACACCATTCCACTTTCAAGAAAATTTGAAGATTCTGTGTCAAAATCAAAGGGTCAACAAAATCAAGATCGATGTGCATTGATGGACATGACAAATGATTCACCAATTGTGGGTCTTGCTGGTGGAAATCTCGAGACACCGTCTGCGAAACAAAGAGGTAGCCGTGTGAAGAACACACCAGGATCTGGTGAAGCTTTGCTGAGGGGACAAGTGAAGACCCTTATGCAGATGGTTGAAGAAGAGGCTTCTCCTCAAATTCAGAGTCTTTCTGGTAGTGTCAATAACAATGCTTCTGTTGTTCAACAACAATCAATTTCTCAGGTGGTGAAAATGGACCAAGGTAGCTGTGAATATGAAAAGTGTGAGATAACCAAGTCCCTTGACTTCTCAGAGAAATCTCAAGTATCAGAAGAATGCACCTCTGAGGTGACAGAAGGAAGTGTGGTTGGTAGCTGCAGCATAGATGAAGATGCTTCTATCTGGTCAATGCAAGTCAACTCATGCAACAATGATGAAGATGATGTGGAGGAAGAAATAGCTGAGGAAGATGAAGAAGAAGAAGAAGACTACTATGATGTTGAAAAAGAAAAATTATGA

Protein sequence

>Msa1384150

METPSSTTTLTNTIPLSRKFEDSVSKSKGQQNQDRCALMDMTNDSPIVGLAGGNLETPSAKQRGSRVKNTPGSGEALLRGQVKTLMQMVEEEASPQIQSLSGSVNNNASVVQQQSISQVVKMDQGSCEYEKCEITKSLDFSEKSQVSEECTSEVTEGSVVGSCSIDEDASIWSMQVNSCNNDEDDVEEEIAEEDEEEEEDYYDVEKEKL*