Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371720 | XP_003601331.1 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371720 | sp|Q9LXR9|PGPP1_ARATH | 63.469 | 271 | 95 | 3 | 81 | 349 | 77 | 345 | 7.10e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371720 | G7IEQ2 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077910 | Msa0371720 | 0.811817 | 5.790970e-51 | -8.615850e-47 |
| Msa0125800 | Msa0371720 | 0.818398 | 2.001845e-52 | -8.615850e-47 |
| Msa0170440 | Msa0371720 | 0.812002 | 5.277492e-51 | -8.615850e-47 |
| Msa0371720 | Msa0420110 | 0.943458 | 1.160779e-102 | -8.615850e-47 |
| Msa0371720 | Msa0466110 | 0.894219 | 3.028885e-75 | -8.615850e-47 |
| Msa0371720 | Msa0482960 | 0.806832 | 6.791858e-50 | -8.615850e-47 |
| Msa0371720 | Msa0511940 | 0.961633 | 6.271704e-120 | -8.615850e-47 |
| Msa0371720 | Msa1303750 | 0.841402 | 4.857703e-58 | -8.615850e-47 |
| Msa0371720 | Msa1303810 | 0.825333 | 4.962267e-54 | -8.615850e-47 |
| Msa0371720 | Msa1363080 | 0.849762 | 2.626045e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371720 | MtrunA17_Chr1g0169191 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 718 |
| Msa0371720 | MtrunA17_Chr3g0118821 | 96.809 | 282 | 9 | 0 | 37 | 318 | 60 | 341 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371720 | AT3G58830.1 | 63.469 | 271 | 95 | 3 | 81 | 349 | 72 | 340 | 7.12e-118 | 345 |
| Msa0371720 | AT3G58830.2 | 63.469 | 271 | 95 | 3 | 81 | 349 | 77 | 345 | 7.22e-118 | 345 |
| Msa0371720 | AT3G58830.3 | 65.823 | 237 | 77 | 3 | 81 | 315 | 77 | 311 | 2.06e-105 | 313 |
Find 142 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGTGGTTTCTGGTTTC+TGG | 0.057163 | 3_1:+69919160 | None:intergenic |
| CCCTTCACTGACATTGTTTA+TGG | 0.078059 | 3_1:-69918245 | Msa0371720:CDS |
| TTGATGTTGACTGTGGTTTC+TGG | 0.127678 | 3_1:+69919153 | None:intergenic |
| GGAATGGGTTTCTAACTATT+TGG | 0.158847 | 3_1:-69918217 | Msa0371720:CDS |
| ATATGGGGCAGTGACAATTT+TGG | 0.203302 | 3_1:+69918986 | None:intergenic |
| TCTACGTAGAAAGGGATTTA+AGG | 0.208357 | 3_1:-69918927 | Msa0371720:CDS |
| CAAACCTGCTTAACAATAAA+TGG | 0.212685 | 3_1:+69918167 | None:intergenic |
| GAAGAAATTGAAAAGCATTT+TGG | 0.233420 | 3_1:-69918403 | Msa0371720:CDS |
| CTTCCTCAATCGTGTGTGTT+TGG | 0.234060 | 3_1:-69921300 | Msa0371720:five_prime_UTR |
| TGCCCTCAAAGTTGATTCTT+TGG | 0.244850 | 3_1:+69919041 | None:intergenic |
| TTATATCAGGAACTGAAATA+TGG | 0.269807 | 3_1:+69918969 | None:intergenic |
| TTGCGTGATAATTGAGATTC+TGG | 0.288376 | 3_1:-69921736 | Msa0371720:five_prime_UTR |
| ACGGCGTGAGGGTGGTTGAC+TGG | 0.292032 | 3_1:-69921571 | Msa0371720:five_prime_UTR |
| TGTTTATGCTTCATCGGATT+TGG | 0.322780 | 3_1:-69921598 | Msa0371720:five_prime_UTR |
| GGGAATGTGGTACGAGCAAC+TGG | 0.332306 | 3_1:+69919423 | None:intergenic |
| TTCCTCAATCGTGTGTGTTT+GGG | 0.343936 | 3_1:-69921299 | Msa0371720:five_prime_UTR |
| GAAAGTTGTAAATCAGAGTT+TGG | 0.356510 | 3_1:-69918827 | Msa0371720:CDS |
| CTCGAACCCAAAACCGGTTC+TGG | 0.361688 | 3_1:+69921839 | None:intergenic |
| GTGTGAACCAGAACCGGTTT+TGG | 0.362482 | 3_1:-69921846 | Msa0371720:five_prime_UTR |
| TCGTTGGGCATGATGATGTC+TGG | 0.366443 | 3_1:+69919402 | None:intergenic |
| GCCTCCACTTGAGTCTTCAT+TGG | 0.369973 | 3_1:-69918849 | Msa0371720:CDS |
| AACGAGATGGATAGATAGAT+AGG | 0.379088 | 3_1:+69921327 | None:intergenic |
| AGAAGTATTTAATAAGGAAT+AGG | 0.381243 | 3_1:+69919218 | None:intergenic |
| CAGTCAATGTATCTTATATC+AGG | 0.381565 | 3_1:+69918956 | None:intergenic |
| CCTTGTGTGTGAACCAGAAC+CGG | 0.383401 | 3_1:-69921852 | Msa0371720:five_prime_UTR |
| TTTGTCGTTCTGATTTGAAT+TGG | 0.389014 | 3_1:+69919243 | None:intergenic |
| CTCTGTGTCTGAGGAAGACT+TGG | 0.390918 | 3_1:+69919310 | None:intergenic |
| CAAGTGAGAAGTATTTAATA+AGG | 0.394930 | 3_1:+69919212 | None:intergenic |
| TATATCAGGAACTGAAATAT+GGG | 0.405912 | 3_1:+69918970 | None:intergenic |
| GATAATACACATTACCAGTT+TGG | 0.409220 | 3_1:+69917675 | None:intergenic |
| TAATCTGTGTTCACTCAAAA+CGG | 0.409941 | 3_1:-69917607 | Msa0371720:three_prime_UTR |
| GCAGATGTGAAAGCGGCATT+TGG | 0.416507 | 3_1:-69919064 | Msa0371720:CDS |
| AGGAATCTTGAGAGTACAAT+TGG | 0.419350 | 3_1:-69918633 | Msa0371720:CDS |
| GGGCATTCTATGTTCAACTA+TGG | 0.421228 | 3_1:-69919023 | Msa0371720:CDS |
| CTGACATTGTTTATGGCAAT+CGG | 0.424991 | 3_1:-69918238 | Msa0371720:CDS |
| AAGGGCTAGAAAGCAATTAC+AGG | 0.425208 | 3_1:-69919279 | Msa0371720:CDS |
| TAGGATCTGGCAATAGCTTC+TGG | 0.429090 | 3_1:+69917820 | None:intergenic |
| CGGCGTGAGGGTGGTTGACT+GGG | 0.430617 | 3_1:-69921570 | Msa0371720:five_prime_UTR |
| TTGTTTATGGCAATCGGAAT+GGG | 0.438839 | 3_1:-69918232 | Msa0371720:CDS |
| CTGATATAAGATACATTGAC+TGG | 0.441013 | 3_1:-69918955 | Msa0371720:CDS |
| ATTTCTTCAGCTGTGCCACC+TGG | 0.452323 | 3_1:+69918418 | None:intergenic |
| GGAGCCATTTATTGTTAAGC+AGG | 0.454977 | 3_1:-69918171 | Msa0371720:intron |
| AGAAGTTTCTCAGAGGGACT+TGG | 0.459372 | 3_1:+69919338 | None:intergenic |
| CTGGGCTGCTCTACGTAGAA+AGG | 0.459911 | 3_1:-69918936 | Msa0371720:CDS |
| GGCCAAAGAATCAACTTTGA+GGG | 0.460017 | 3_1:-69919043 | Msa0371720:CDS |
| TACGGCCGGGATTTATTGAA+TGG | 0.460666 | 3_1:-69921378 | Msa0371720:five_prime_UTR |
| CTACGTAGAAAGGGATTTAA+GGG | 0.460767 | 3_1:-69918926 | Msa0371720:CDS |
| CGTCAAACACCATTCACTTT+CGG | 0.461685 | 3_1:-69921251 | Msa0371720:intron |
| GGCTCCTCTGCAAGACTCAA+TGG | 0.471686 | 3_1:+69918188 | None:intergenic |
| GTCCCTCTGAGAAACTTCTA+TGG | 0.478928 | 3_1:-69919334 | Msa0371720:CDS |
| AGACAGACAAAGGGAATTCA+AGG | 0.479391 | 3_1:-69919128 | Msa0371720:CDS |
| AGCTGTAGCAACATGTGGTC+AGG | 0.481320 | 3_1:-69919505 | Msa0371720:five_prime_UTR |
| TACCCTACTCTTTAACGCTC+TGG | 0.487917 | 3_1:-69918871 | Msa0371720:CDS |
| CCAGAACTCGAACCCAAAAC+CGG | 0.489227 | 3_1:+69921833 | None:intergenic |
| TGGCCAAAGAATCAACTTTG+AGG | 0.489408 | 3_1:-69919044 | Msa0371720:CDS |
| GTAAAGTACTGGTCTAGAAG+AGG | 0.490645 | 3_1:-69917858 | Msa0371720:CDS |
| GTGGTTGACTGGGTTGTGAG+TGG | 0.490977 | 3_1:-69921560 | Msa0371720:five_prime_UTR |
| GTCAAGTGTTTATGCTTCAT+CGG | 0.492206 | 3_1:-69921604 | Msa0371720:five_prime_UTR |
| TTGACACAATGTCTAGGATC+TGG | 0.492519 | 3_1:+69917807 | None:intergenic |
| AAACTACATTTGTAAAGTAC+TGG | 0.493301 | 3_1:-69917869 | Msa0371720:CDS |
| ATTGTTTATGGCAATCGGAA+TGG | 0.494457 | 3_1:-69918233 | Msa0371720:CDS |
| CCCAGAAAATTAGTATGCTA+TGG | 0.495081 | 3_1:+69917754 | None:intergenic |
| ATCGCACTTCAGTAACTTTG+AGG | 0.496034 | 3_1:+69921351 | None:intergenic |
| AATCTGTGTTCACTCAAAAC+GGG | 0.500997 | 3_1:-69917606 | Msa0371720:three_prime_UTR |
| GGCCAGAGCGTTAAAGAGTA+GGG | 0.506103 | 3_1:+69918869 | None:intergenic |
| GCTGTATTTAGTAACTCAGC+TGG | 0.507393 | 3_1:-69918794 | Msa0371720:intron |
| GATTTGGTCGGACGGCGTGA+GGG | 0.509451 | 3_1:-69921582 | Msa0371720:five_prime_UTR |
| TTGACTGGGTTGTGAGTGGA+TGG | 0.511740 | 3_1:-69921556 | Msa0371720:intron |
| CGGTTGTGAGAGCTTTGCCA+TGG | 0.513266 | 3_1:-69921700 | Msa0371720:five_prime_UTR |
| GATGCATTCATGCGATCATA+CGG | 0.513801 | 3_1:-69921396 | Msa0371720:five_prime_UTR |
| GGATTTGGTCGGACGGCGTG+AGG | 0.520294 | 3_1:-69921583 | Msa0371720:five_prime_UTR |
| TTGGTCGGACGGCGTGAGGG+TGG | 0.522027 | 3_1:-69921579 | Msa0371720:five_prime_UTR |
| CGGTTGTGAGAGCTTCATCA+TGG | 0.527203 | 3_1:-69921631 | Msa0371720:five_prime_UTR |
| TCAATCGTGTGTGTTTGGGT+TGG | 0.528675 | 3_1:-69921295 | Msa0371720:five_prime_UTR |
| TGACTCAACACTAACCTGTC+AGG | 0.529657 | 3_1:+69920171 | None:intergenic |
| GTTCTGGGGAAGAGATGAAC+CGG | 0.531423 | 3_1:-69921817 | Msa0371720:five_prime_UTR |
| CTATGGAGACAAGTCTATCA+AGG | 0.534134 | 3_1:+69917771 | None:intergenic |
| GAGAACTTACCGAAAGTGAA+TGG | 0.534557 | 3_1:+69921242 | None:intergenic |
| TGGGCTGCTCTACGTAGAAA+GGG | 0.534826 | 3_1:-69918935 | Msa0371720:CDS |
| TAAATTAAGATTTGGTGATG+TGG | 0.537646 | 3_1:-69921427 | Msa0371720:five_prime_UTR |
| CTCACAACCGCACGATTCAT+CGG | 0.540430 | 3_1:+69921644 | None:intergenic |
| TTACGCAGGTGATTGATACA+AGG | 0.543357 | 3_1:-69920202 | Msa0371720:intron |
| AGGGACTTGGCTATCTGCAT+TGG | 0.544545 | 3_1:+69919351 | None:intergenic |
| TTGAGATTCTGGGAAGGAGC+TGG | 0.547448 | 3_1:-69921725 | Msa0371720:five_prime_UTR |
| GACGCCGCAGCACTGTGTTG+TGG | 0.548728 | 3_1:+69921270 | None:intergenic |
| AGGCCAGAGCGTTAAAGAGT+AGG | 0.550814 | 3_1:+69918868 | None:intergenic |
| TTGTTGCAACTCTGTGTCTG+AGG | 0.551570 | 3_1:+69919301 | None:intergenic |
| TATGCTTCATCGGATTTGGT+CGG | 0.552878 | 3_1:-69921594 | Msa0371720:five_prime_UTR |
| AACATCAACTAGACAGACAA+AGG | 0.555337 | 3_1:-69919138 | Msa0371720:CDS |
| TAAAGTACTGGTCTAGAAGA+GGG | 0.555992 | 3_1:-69917857 | Msa0371720:CDS |
| GCCATAAACAATGTCAGTGA+AGG | 0.556282 | 3_1:+69918244 | None:intergenic |
| AGACACAGAGTTGCAACAAA+GGG | 0.557784 | 3_1:-69919297 | Msa0371720:CDS |
| CGTTGGGCATGATGATGTCT+GGG | 0.560325 | 3_1:+69919403 | None:intergenic |
| AACCCAAACACACACGATTG+AGG | 0.562828 | 3_1:+69921297 | None:intergenic |
| CATTCATGCGATCATACGGC+CGG | 0.566818 | 3_1:-69921392 | Msa0371720:five_prime_UTR |
| CCATAAACAATGTCAGTGAA+GGG | 0.567655 | 3_1:+69918245 | None:intergenic |
| CATGATGATGTCTGGGAATG+TGG | 0.568095 | 3_1:+69919410 | None:intergenic |
| GGCAATAGCTTCTGGTCAAG+TGG | 0.568702 | 3_1:+69917828 | None:intergenic |
| ACACACACGATTGAGGAAGA+AGG | 0.574402 | 3_1:+69921304 | None:intergenic |
| ACTGCAGGAGTGAAGAAGCC+AGG | 0.579048 | 3_1:-69918436 | Msa0371720:intron |
| CAGACACAGAGTTGCAACAA+AGG | 0.579774 | 3_1:-69919298 | Msa0371720:CDS |
| CCGGTTCTGGTTCACACACA+AGG | 0.580423 | 3_1:+69921852 | None:intergenic |
| ACGAGATGGATAGATAGATA+GGG | 0.583877 | 3_1:+69921328 | None:intergenic |
| AGACAAGTCTATCAAGGATG+TGG | 0.585793 | 3_1:+69917777 | None:intergenic |
| ACATCAACTAGACAGACAAA+GGG | 0.586910 | 3_1:-69919137 | Msa0371720:CDS |
| TACGCAGGTGATTGATACAA+GGG | 0.588207 | 3_1:-69920201 | Msa0371720:intron |
| GGTTGTGAGAGCTTTGCCAT+GGG | 0.593154 | 3_1:-69921699 | Msa0371720:five_prime_UTR |
| TGCGTGATAATTGAGATTCT+GGG | 0.593482 | 3_1:-69921735 | Msa0371720:five_prime_UTR |
| GACCATAGAAGTTTCTCAGA+GGG | 0.594094 | 3_1:+69919332 | None:intergenic |
| TGAAGCATCAGAGTTAATCA+TGG | 0.595342 | 3_1:-69918377 | Msa0371720:intron |
| TGTCTAGTTGATGTTGACTG+TGG | 0.599422 | 3_1:+69919146 | None:intergenic |
| GCGTGCCATTCAATAAATCC+CGG | 0.605280 | 3_1:+69921373 | None:intergenic |
| ACAAGGGTAAGTTACCTGAC+AGG | 0.607943 | 3_1:-69920185 | Msa0371720:intron |
| GGCTCTTTGACACAATGTCT+AGG | 0.619400 | 3_1:+69917801 | None:intergenic |
| GGTTGTGAGAGCTTCATCAT+GGG | 0.623455 | 3_1:-69921630 | Msa0371720:five_prime_UTR |
| TTCTGGTTCACACACAAGGA+AGG | 0.623506 | 3_1:+69921856 | None:intergenic |
| TTGCGTCTCATTAGAACATG+AGG | 0.626438 | 3_1:+69921770 | None:intergenic |
| GACGAATCACAACTCGCCCA+TGG | 0.626690 | 3_1:+69921683 | None:intergenic |
| TTGAGGAAGAAGGAACGAGA+TGG | 0.631328 | 3_1:+69921314 | None:intergenic |
| CTTTCCAATGAAGACTCAAG+TGG | 0.631381 | 3_1:+69918845 | None:intergenic |
| ACCATGATGGTTCAAAAGCG+AGG | 0.633614 | 3_1:-69918653 | Msa0371720:CDS |
| CTTCGTGAGTATGACCATGA+TGG | 0.634215 | 3_1:-69918666 | Msa0371720:CDS |
| CTTCATCGGATTTGGTCGGA+CGG | 0.637184 | 3_1:-69921590 | Msa0371720:five_prime_UTR |
| CAAGTCTATCAAGGATGTGG+CGG | 0.639966 | 3_1:+69917780 | None:intergenic |
| ATTCATGCGATCATACGGCC+GGG | 0.642789 | 3_1:-69921391 | Msa0371720:five_prime_UTR |
| AGAGCCATTGAGTCTTGCAG+AGG | 0.643454 | 3_1:-69918192 | Msa0371720:CDS |
| TGATATAAGATACATTGACT+GGG | 0.644285 | 3_1:-69918954 | Msa0371720:CDS |
| TCCAATGAAGACTCAAGTGG+AGG | 0.644383 | 3_1:+69918848 | None:intergenic |
| CGTCTCATTAGAACATGAGG+AGG | 0.648830 | 3_1:+69921773 | None:intergenic |
| CATAAACAATGTCAGTGAAG+GGG | 0.650053 | 3_1:+69918246 | None:intergenic |
| ATATCAGGAACTGAAATATG+GGG | 0.654119 | 3_1:+69918971 | None:intergenic |
| TGCATTGGCAAGTGATAGAG+TGG | 0.659077 | 3_1:+69919366 | None:intergenic |
| ATTCTGGGAAGGAGCTGGTG+CGG | 0.660668 | 3_1:-69921720 | Msa0371720:five_prime_UTR |
| GGATCCACAACACAGTGCTG+CGG | 0.669078 | 3_1:-69921274 | Msa0371720:five_prime_UTR |
| TGATAATTGAGATTCTGGGA+AGG | 0.677729 | 3_1:-69921731 | Msa0371720:five_prime_UTR |
| TAGATCGCCGATGAATCGTG+CGG | 0.693040 | 3_1:-69921651 | Msa0371720:five_prime_UTR |
| GGAATGTGGTACGAGCAACT+GGG | 0.693669 | 3_1:+69919424 | None:intergenic |
| AATTATCACGCAAACAAACG+AGG | 0.695592 | 3_1:+69921746 | None:intergenic |
| GGACCATAGAAGTTTCTCAG+AGG | 0.703711 | 3_1:+69919331 | None:intergenic |
| CATACAGCTGTAGCAACATG+TGG | 0.711649 | 3_1:-69919510 | Msa0371720:five_prime_UTR |
| GTGGTGGGCAGATGTGAAAG+CGG | 0.723068 | 3_1:-69919071 | Msa0371720:CDS |
| GCAGGAGTGAAGAAGCCAGG+TGG | 0.732956 | 3_1:-69918433 | Msa0371720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATCAATAATAATTTTCT+TGG | + | chr3_1:69918848-69918867 | None:intergenic | 10.0% |
| !! | TCGAATTTACATTATTTAAT+CGG | - | chr3_1:69918197-69918216 | Msa0371720:CDS | 15.0% |
| !! | ATTATTATTGATAAATCTCT+AGG | - | chr3_1:69918853-69918872 | Msa0371720:CDS | 15.0% |
| !!! | TTTCATGTATATTTTAAAGT+TGG | - | chr3_1:69919114-69919133 | Msa0371720:CDS | 15.0% |
| !!! | GAATTTTTTTTTTAATGAGA+AGG | - | chr3_1:69919657-69919676 | Msa0371720:intron | 15.0% |
| !!! | GATTAAACAAATTTGAAATT+TGG | + | chr3_1:69919821-69919840 | None:intergenic | 15.0% |
| !! | TATGTTAAACCATAAATATT+CGG | - | chr3_1:69921118-69921137 | Msa0371720:intron | 15.0% |
| !! | TTCATAAATTAAAATGTACA+AGG | + | chr3_1:69921411-69921430 | None:intergenic | 15.0% |
| !! | TTTGGAAAATAAGTTGTTTA+TGG | + | chr3_1:69918327-69918346 | None:intergenic | 20.0% |
| !! | AAAAAGCTTATTCATATGTT+TGG | + | chr3_1:69918345-69918364 | None:intergenic | 20.0% |
| !! | TATTACTATCCTTAATATTG+TGG | - | chr3_1:69918511-69918530 | Msa0371720:intron | 20.0% |
| !! | AACAAGCAATATAAAAAACT+TGG | + | chr3_1:69918598-69918617 | None:intergenic | 20.0% |
| !! | TTTGAACTTAATTCATGTAA+AGG | - | chr3_1:69918902-69918921 | Msa0371720:CDS | 20.0% |
| !! | TGACTAATATTAATCAACTA+TGG | - | chr3_1:69919425-69919444 | Msa0371720:CDS | 20.0% |
| !!! | ATAGGCATTCAATATTATTT+TGG | - | chr3_1:69919585-69919604 | Msa0371720:intron | 20.0% |
| !!! | TATTTATTACCATTTCCTTT+TGG | - | chr3_1:69919695-69919714 | Msa0371720:intron | 20.0% |
| !!! | AGAAGTATTTAATAAGGAAT+AGG | + | chr3_1:69920189-69920208 | None:intergenic | 20.0% |
| !! | CAGAAAGAAATGTTTATAAA+TGG | + | chr3_1:69921469-69921488 | None:intergenic | 20.0% |
| !!! | TACTATTTTTTTTACCAAAC+TGG | - | chr3_1:69921715-69921734 | Msa0371720:five_prime_UTR | 20.0% |
| !! | TATAGAAAAATGAGAAAGTT+GGG | - | chr3_1:69921821-69921840 | Msa0371720:five_prime_UTR | 20.0% |
| !!! | TAAATTAAGATTTGGTGATG+TGG | - | chr3_1:69917977-69917996 | Msa0371720:intron | 25.0% |
| ! | CTTCTAATTATTGCTTATAC+TGG | - | chr3_1:69918277-69918296 | Msa0371720:intron | 25.0% |
| ! | ATAAGTTGTTTATGGAAACA+TGG | + | chr3_1:69918319-69918338 | None:intergenic | 25.0% |
| ! | AATTGCATTAATGATGTGTT+TGG | - | chr3_1:69918558-69918577 | Msa0371720:intron | 25.0% |
| ! | TAATTGTTTAGTACCATGAT+AGG | - | chr3_1:69918986-69919005 | Msa0371720:CDS | 25.0% |
| !!! | TGAAAATTTTGTTTTTACGC+AGG | - | chr3_1:69919188-69919207 | Msa0371720:CDS | 25.0% |
| !!! | TCCATGATTTTTTTTGTTCA+TGG | - | chr3_1:69919285-69919304 | Msa0371720:CDS | 25.0% |
| ! | ACCATGAACAAAAAAAATCA+TGG | + | chr3_1:69919289-69919308 | None:intergenic | 25.0% |
| ! | TTACATATGCTCAATAATAC+AGG | + | chr3_1:69919347-69919366 | None:intergenic | 25.0% |
| ! | GTATGTAATAGCAATCTTAA+AGG | + | chr3_1:69919558-69919577 | None:intergenic | 25.0% |
| !!! | AATATTATTTTGGCAACTAC+TGG | - | chr3_1:69919595-69919614 | Msa0371720:intron | 25.0% |
| !!! | CAAGTGAGAAGTATTTAATA+AGG | + | chr3_1:69920195-69920214 | None:intergenic | 25.0% |
| ! | TATATCAGGAACTGAAATAT+GGG | + | chr3_1:69920437-69920456 | None:intergenic | 25.0% |
| ! | TTATATCAGGAACTGAAATA+TGG | + | chr3_1:69920438-69920457 | None:intergenic | 25.0% |
| !! | TGATATAAGATACATTGACT+GGG | - | chr3_1:69920450-69920469 | Msa0371720:intron | 25.0% |
| !!! | TTCAAACTTGTTCTGAAATT+TGG | - | chr3_1:69920652-69920671 | Msa0371720:intron | 25.0% |
| ! | TAAGCTTATGTTAAAATGCT+AGG | - | chr3_1:69920886-69920905 | Msa0371720:intron | 25.0% |
| !!! | GAAGAAATTGAAAAGCATTT+TGG | - | chr3_1:69921001-69921020 | Msa0371720:intron | 25.0% |
| !!! | TATGTAGTTTGATTTGATTC+AGG | - | chr3_1:69921093-69921112 | Msa0371720:intron | 25.0% |
| !! | TTTGGTAAAAGTGTAGTTAA+AGG | - | chr3_1:69921366-69921385 | Msa0371720:five_prime_UTR | 25.0% |
| ! | AAACTACATTTGTAAAGTAC+TGG | - | chr3_1:69921535-69921554 | Msa0371720:intron | 25.0% |
| ! | GTATAGAAAAATGAGAAAGT+TGG | - | chr3_1:69921820-69921839 | Msa0371720:five_prime_UTR | 25.0% |
| !! | GAAAGTATCAATGTATGAAG+AGG | - | chr3_1:69917870-69917889 | Msa0371720:CDS | 30.0% |
| GTAACTGAATGAGAAAATGT+AGG | + | chr3_1:69918238-69918257 | None:intergenic | 30.0% | |
| AAACAGTGTCATAAGTGTTT+AGG | - | chr3_1:69918397-69918416 | Msa0371720:CDS | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3_1:69918433-69918452 | Msa0371720:intron | 30.0% | |
| CAAATAAGTCAATCCAAACA+GGG | - | chr3_1:69918434-69918453 | Msa0371720:intron | 30.0% | |
| ! | ACTTTTTGTGGTTACTGTTA+CGG | - | chr3_1:69918485-69918504 | Msa0371720:intron | 30.0% |
| TGGAATTCTCCACAATATTA+AGG | + | chr3_1:69918523-69918542 | None:intergenic | 30.0% | |
| ACACATCATTAATGCAATTG+TGG | + | chr3_1:69918557-69918576 | None:intergenic | 30.0% | |
| ACAGAGATGAAATGTTATGA+TGG | - | chr3_1:69918652-69918671 | Msa0371720:CDS | 30.0% | |
| ! | CTTTTCTACTAAAGAAGCAA+TGG | + | chr3_1:69918708-69918727 | None:intergenic | 30.0% |
| TTCATCTAAAAATCCTCACA+TGG | - | chr3_1:69918943-69918962 | Msa0371720:CDS | 30.0% | |
| TACATGAAAAACTGACATGT+AGG | + | chr3_1:69919103-69919122 | None:intergenic | 30.0% | |
| !! | AAATCTCTTGCTTTTGGTTA+TGG | - | chr3_1:69919472-69919491 | Msa0371720:exon | 30.0% |
| CTATTACATACCTTTCGTAT+AGG | - | chr3_1:69919567-69919586 | Msa0371720:intron | 30.0% | |
| ATATTGAATGCCTATACGAA+AGG | + | chr3_1:69919580-69919599 | None:intergenic | 30.0% | |
| ! | TATTACCATTTCCTTTTGGT+TGG | - | chr3_1:69919699-69919718 | Msa0371720:intron | 30.0% |
| !! | ATTACCATTTCCTTTTGGTT+GGG | - | chr3_1:69919700-69919719 | Msa0371720:intron | 30.0% |
| ! | TTTGTCGTTCTGATTTGAAT+TGG | + | chr3_1:69920164-69920183 | None:intergenic | 30.0% |
| ATATCAGGAACTGAAATATG+GGG | + | chr3_1:69920436-69920455 | None:intergenic | 30.0% | |
| CAGTCAATGTATCTTATATC+AGG | + | chr3_1:69920451-69920470 | None:intergenic | 30.0% | |
| CTGATATAAGATACATTGAC+TGG | - | chr3_1:69920449-69920468 | Msa0371720:intron | 30.0% | |
| GAAAGTTGTAAATCAGAGTT+TGG | - | chr3_1:69920577-69920596 | Msa0371720:intron | 30.0% | |
| ! | TCTTCATTGTTGTTGTAATC+AGG | - | chr3_1:69920714-69920733 | Msa0371720:intron | 30.0% |
| TAGGATTGTGAAAATTCTGA+GGG | - | chr3_1:69920905-69920924 | Msa0371720:intron | 30.0% | |
| ATACTTTGTATGTATACTGC+AGG | - | chr3_1:69920953-69920972 | Msa0371720:intron | 30.0% | |
| CAAACCTGCTTAACAATAAA+TGG | + | chr3_1:69921240-69921259 | None:intergenic | 30.0% | |
| ! | AGAATGTTTAGAGTGAAGTT+TGG | - | chr3_1:69921348-69921367 | Msa0371720:five_prime_UTR | 30.0% |
| ! | TCCATAGCATACTAATTTTC+TGG | - | chr3_1:69921649-69921668 | Msa0371720:five_prime_UTR | 30.0% |
| ! | CCATAGCATACTAATTTTCT+GGG | - | chr3_1:69921650-69921669 | Msa0371720:five_prime_UTR | 30.0% |
| GATAATACACATTACCAGTT+TGG | + | chr3_1:69921732-69921751 | None:intergenic | 30.0% | |
| ACTTAACTAACCAAAAAGAC+AGG | + | chr3_1:69921764-69921783 | None:intergenic | 30.0% | |
| TAATCTGTGTTCACTCAAAA+CGG | - | chr3_1:69921797-69921816 | Msa0371720:five_prime_UTR | 30.0% | |
| GAAGAAAAACAGGTTTAGAC+CGG | + | chr3_1:69917609-69917628 | None:intergenic | 35.0% | |
| AATTATCACGCAAACAAACG+AGG | + | chr3_1:69917661-69917680 | None:intergenic | 35.0% | |
| TTGCGTGATAATTGAGATTC+TGG | - | chr3_1:69917668-69917687 | Msa0371720:three_prime_UTR | 35.0% | |
| TGCGTGATAATTGAGATTCT+GGG | - | chr3_1:69917669-69917688 | Msa0371720:three_prime_UTR | 35.0% | |
| ! | TGATAATTGAGATTCTGGGA+AGG | - | chr3_1:69917673-69917692 | Msa0371720:three_prime_UTR | 35.0% |
| GTCAAGTGTTTATGCTTCAT+CGG | - | chr3_1:69917800-69917819 | Msa0371720:CDS | 35.0% | |
| TGTTTATGCTTCATCGGATT+TGG | - | chr3_1:69917806-69917825 | Msa0371720:CDS | 35.0% | |
| ACGAGATGGATAGATAGATA+GGG | + | chr3_1:69918079-69918098 | None:intergenic | 35.0% | |
| AACGAGATGGATAGATAGAT+AGG | + | chr3_1:69918080-69918099 | None:intergenic | 35.0% | |
| !! | AACCACAAAAAGTTTGTTGC+TGG | + | chr3_1:69918478-69918497 | None:intergenic | 35.0% |
| !! | TGAAATGTTATGATGGACAG+TGG | - | chr3_1:69918659-69918678 | Msa0371720:CDS | 35.0% |
| AATCTGTAGAACTACCACTA+AGG | - | chr3_1:69918774-69918793 | Msa0371720:intron | 35.0% | |
| CTATTGAATTACTCTCTACC+TGG | + | chr3_1:69918808-69918827 | None:intergenic | 35.0% | |
| ! | AATCTCTAGGAGAGATTTAG+AGG | - | chr3_1:69918866-69918885 | Msa0371720:CDS | 35.0% |
| TAGGAGAGATTTAGAGGTAA+AGG | - | chr3_1:69918872-69918891 | Msa0371720:CDS | 35.0% | |
| AGGAGAGATTTAGAGGTAAA+GGG | - | chr3_1:69918873-69918892 | Msa0371720:CDS | 35.0% | |
| ATCTAAAAATCCTCACATGG+TGG | - | chr3_1:69918946-69918965 | Msa0371720:CDS | 35.0% | |
| TGTTTAGTACCATGATAGGT+AGG | - | chr3_1:69918990-69919009 | Msa0371720:CDS | 35.0% | |
| GTTTAGTACCATGATAGGTA+GGG | - | chr3_1:69918991-69919010 | Msa0371720:CDS | 35.0% | |
| !!! | CCTAGTGTTTTTTGTTCCAT+GGG | - | chr3_1:69919017-69919036 | Msa0371720:CDS | 35.0% |
| GGATTTGAGCTCTATTTACA+AGG | + | chr3_1:69919326-69919345 | None:intergenic | 35.0% | |
| TCAACTATGGCTATTACTGA+TGG | - | chr3_1:69919438-69919457 | Msa0371720:CDS | 35.0% | |
| ! | GGTAACAAATCTCTTGCTTT+TGG | - | chr3_1:69919466-69919485 | Msa0371720:exon | 35.0% |
| !! | TTATGGTTCTGGATCTAAAG+TGG | - | chr3_1:69919489-69919508 | Msa0371720:five_prime_UTR | 35.0% |
| TATCGTAATACATGACCATG+TGG | - | chr3_1:69919513-69919532 | Msa0371720:five_prime_UTR | 35.0% | |
| CAACTAAAACACATTCCACA+TGG | + | chr3_1:69919531-69919550 | None:intergenic | 35.0% | |
| !! | TTACCATTTCCTTTTGGTTG+GGG | - | chr3_1:69919701-69919720 | Msa0371720:intron | 35.0% |
| !!! | GGTTTCTGGATTTTGATTAC+TGG | + | chr3_1:69920233-69920252 | None:intergenic | 35.0% |
| AACATCAACTAGACAGACAA+AGG | - | chr3_1:69920266-69920285 | Msa0371720:intron | 35.0% | |
| ACATCAACTAGACAGACAAA+GGG | - | chr3_1:69920267-69920286 | Msa0371720:intron | 35.0% | |
| ! | ACTTTTCACTAAGATGTGGT+GGG | - | chr3_1:69920318-69920337 | Msa0371720:intron | 35.0% |
| TCTACGTAGAAAGGGATTTA+AGG | - | chr3_1:69920477-69920496 | Msa0371720:intron | 35.0% | |
| CTACGTAGAAAGGGATTTAA+GGG | - | chr3_1:69920478-69920497 | Msa0371720:intron | 35.0% | |
| ! | AGGAATCTTGAGAGTACAAT+TGG | - | chr3_1:69920771-69920790 | Msa0371720:intron | 35.0% |
| CTAGGATTGTGAAAATTCTG+AGG | - | chr3_1:69920904-69920923 | Msa0371720:intron | 35.0% | |
| ! | TGAAGCATCAGAGTTAATCA+TGG | - | chr3_1:69921027-69921046 | Msa0371720:intron | 35.0% |
| AACCATAAATATTCGGATGC+AGG | - | chr3_1:69921125-69921144 | Msa0371720:intron | 35.0% | |
| ATAAATATTCGGATGCAGGT+GGG | - | chr3_1:69921129-69921148 | Msa0371720:intron | 35.0% | |
| CATAAACAATGTCAGTGAAG+GGG | + | chr3_1:69921161-69921180 | None:intergenic | 35.0% | |
| CCATAAACAATGTCAGTGAA+GGG | + | chr3_1:69921162-69921181 | None:intergenic | 35.0% | |
| CTGACATTGTTTATGGCAAT+CGG | - | chr3_1:69921166-69921185 | Msa0371720:intron | 35.0% | |
| ATTGTTTATGGCAATCGGAA+TGG | - | chr3_1:69921171-69921190 | Msa0371720:intron | 35.0% | |
| TTGTTTATGGCAATCGGAAT+GGG | - | chr3_1:69921172-69921191 | Msa0371720:intron | 35.0% | |
| ! | GGAATGGGTTTCTAACTATT+TGG | - | chr3_1:69921187-69921206 | Msa0371720:intron | 35.0% |
| GTTTCAATGATCGTGATGAT+AGG | - | chr3_1:69921500-69921519 | Msa0371720:intron | 35.0% | |
| !! | TAAAGTACTGGTCTAGAAGA+GGG | - | chr3_1:69921547-69921566 | Msa0371720:intron | 35.0% |
| CCCAGAAAATTAGTATGCTA+TGG | + | chr3_1:69921653-69921672 | None:intergenic | 35.0% | |
| AACTAACCAAAAAGACAGGT+TGG | + | chr3_1:69921760-69921779 | None:intergenic | 35.0% | |
| AATCTGTGTTCACTCAAAAC+GGG | - | chr3_1:69921798-69921817 | Msa0371720:five_prime_UTR | 35.0% | |
| TGAGGAGGAAGAAGAAAAAC+AGG | + | chr3_1:69917619-69917638 | None:intergenic | 40.0% | |
| TTGCGTCTCATTAGAACATG+AGG | + | chr3_1:69917637-69917656 | None:intergenic | 40.0% | |
| ! | TATGCTTCATCGGATTTGGT+CGG | - | chr3_1:69917810-69917829 | Msa0371720:CDS | 40.0% |
| CAATGTATGAAGAGGTGAAC+TGG | - | chr3_1:69917878-69917897 | Msa0371720:CDS | 40.0% | |
| GATGCATTCATGCGATCATA+CGG | - | chr3_1:69918008-69918027 | Msa0371720:intron | 40.0% | |
| ATCGCACTTCAGTAACTTTG+AGG | + | chr3_1:69918056-69918075 | None:intergenic | 40.0% | |
| TTCCTCAATCGTGTGTGTTT+GGG | - | chr3_1:69918105-69918124 | Msa0371720:intron | 40.0% | |
| CGTCAAACACCATTCACTTT+CGG | - | chr3_1:69918153-69918172 | Msa0371720:intron | 40.0% | |
| GAGAACTTACCGAAAGTGAA+TGG | + | chr3_1:69918165-69918184 | None:intergenic | 40.0% | |
| ! | TGCCAGCAACAAACTTTTTG+TGG | - | chr3_1:69918473-69918492 | Msa0371720:intron | 40.0% |
| CAATTGTGGACACATTAGTC+TGG | + | chr3_1:69918543-69918562 | None:intergenic | 40.0% | |
| GTAGAACTACCACTAAGGAT+AGG | - | chr3_1:69918779-69918798 | Msa0371720:intron | 40.0% | |
| !!! | TCGTTTTTTTCCACCATGTG+AGG | + | chr3_1:69918959-69918978 | None:intergenic | 40.0% |
| !!! | GCCTAGTGTTTTTTGTTCCA+TGG | - | chr3_1:69919016-69919035 | Msa0371720:CDS | 40.0% |
| CCCATGGAACAAAAAACACT+AGG | + | chr3_1:69919020-69919039 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTTCCATGGGTTGC+AGG | - | chr3_1:69919024-69919043 | Msa0371720:CDS | 40.0% |
| CAGGATAGTGTCTACTCATT+TGG | - | chr3_1:69919043-69919062 | Msa0371720:CDS | 40.0% | |
| TTACGCAGGTGATTGATACA+AGG | - | chr3_1:69919202-69919221 | Msa0371720:CDS | 40.0% | |
| TACGCAGGTGATTGATACAA+GGG | - | chr3_1:69919203-69919222 | Msa0371720:CDS | 40.0% | |
| TTGAGTCATGATTTCACGTG+TGG | - | chr3_1:69919248-69919267 | Msa0371720:CDS | 40.0% | |
| !! | CTTGCTTTTGGTTATGGTTC+TGG | - | chr3_1:69919478-69919497 | Msa0371720:five_prime_UTR | 40.0% |
| AGTAGACACAACACTAAGCA+AGG | - | chr3_1:69919632-69919651 | Msa0371720:intron | 40.0% | |
| ATACCCCAACCAAAAGGAAA+TGG | + | chr3_1:69919707-69919726 | None:intergenic | 40.0% | |
| ACATGTATACCCCAACCAAA+AGG | + | chr3_1:69919713-69919732 | None:intergenic | 40.0% | |
| ! | GGTGAGTTTTCTCTTTCGTT+GGG | + | chr3_1:69920020-69920039 | None:intergenic | 40.0% |
| ! | TGGTGAGTTTTCTCTTTCGT+TGG | + | chr3_1:69920021-69920040 | None:intergenic | 40.0% |
| GACCATAGAAGTTTCTCAGA+GGG | + | chr3_1:69920075-69920094 | None:intergenic | 40.0% | |
| AGACACAGAGTTGCAACAAA+GGG | - | chr3_1:69920107-69920126 | Msa0371720:intron | 40.0% | |
| AAGGGCTAGAAAGCAATTAC+AGG | - | chr3_1:69920125-69920144 | Msa0371720:intron | 40.0% | |
| ! | TTGATGTTGACTGTGGTTTC+TGG | + | chr3_1:69920254-69920273 | None:intergenic | 40.0% |
| ! | TGTCTAGTTGATGTTGACTG+TGG | + | chr3_1:69920261-69920280 | None:intergenic | 40.0% |
| AGACAGACAAAGGGAATTCA+AGG | - | chr3_1:69920276-69920295 | Msa0371720:intron | 40.0% | |
| ! | GTGCACTTTTCACTAAGATG+TGG | - | chr3_1:69920314-69920333 | Msa0371720:intron | 40.0% |
| ! | CACTTTTCACTAAGATGTGG+TGG | - | chr3_1:69920317-69920336 | Msa0371720:intron | 40.0% |
| TGGCCAAAGAATCAACTTTG+AGG | - | chr3_1:69920360-69920379 | Msa0371720:intron | 40.0% | |
| GGCCAAAGAATCAACTTTGA+GGG | - | chr3_1:69920361-69920380 | Msa0371720:intron | 40.0% | |
| ! | TGCCCTCAAAGTTGATTCTT+TGG | + | chr3_1:69920366-69920385 | None:intergenic | 40.0% |
| GGGCATTCTATGTTCAACTA+TGG | - | chr3_1:69920381-69920400 | Msa0371720:intron | 40.0% | |
| ! | TATGGGGCAGTGACAATTTT+GGG | + | chr3_1:69920420-69920439 | None:intergenic | 40.0% |
| ! | ATATGGGGCAGTGACAATTT+TGG | + | chr3_1:69920421-69920440 | None:intergenic | 40.0% |
| CTTTCCAATGAAGACTCAAG+TGG | + | chr3_1:69920562-69920581 | None:intergenic | 40.0% | |
| GCTGTATTTAGTAACTCAGC+TGG | - | chr3_1:69920610-69920629 | Msa0371720:intron | 40.0% | |
| !!! | TGAGTGGTGCTTTTTCTGTA+TGG | - | chr3_1:69920815-69920834 | Msa0371720:intron | 40.0% |
| CACCTGCATCCGAATATTTA+TGG | + | chr3_1:69921130-69921149 | None:intergenic | 40.0% | |
| CATAAATATTCGGATGCAGG+TGG | - | chr3_1:69921128-69921147 | Msa0371720:intron | 40.0% | |
| CCCTTCACTGACATTGTTTA+TGG | - | chr3_1:69921159-69921178 | Msa0371720:intron | 40.0% | |
| GCCATAAACAATGTCAGTGA+AGG | + | chr3_1:69921163-69921182 | None:intergenic | 40.0% | |
| GGAGCCATTTATTGTTAAGC+AGG | - | chr3_1:69921233-69921252 | Msa0371720:intron | 40.0% | |
| AATGATCGTGATGATAGGTG+AGG | - | chr3_1:69921505-69921524 | Msa0371720:intron | 40.0% | |
| !! | GTAAAGTACTGGTCTAGAAG+AGG | - | chr3_1:69921546-69921565 | Msa0371720:intron | 40.0% |
| ! | TTGACACAATGTCTAGGATC+TGG | + | chr3_1:69921600-69921619 | None:intergenic | 40.0% |
| AGACAAGTCTATCAAGGATG+TGG | + | chr3_1:69921630-69921649 | None:intergenic | 40.0% | |
| CTATGGAGACAAGTCTATCA+AGG | + | chr3_1:69921636-69921655 | None:intergenic | 40.0% | |
| !! | AACCAAAAAGACAGGTTGGT+GGG | + | chr3_1:69921756-69921775 | None:intergenic | 40.0% |
| ! | TAACCAAAAAGACAGGTTGG+TGG | + | chr3_1:69921757-69921776 | None:intergenic | 40.0% |
| !! | TTCTGGTTCACACACAAGGA+AGG | + | chr3_1:69917551-69917570 | None:intergenic | 45.0% |
| !! | TGTGAACCAGAACCGGTTTT+GGG | - | chr3_1:69917559-69917578 | Msa0371720:three_prime_UTR | 45.0% |
| CGTCTCATTAGAACATGAGG+AGG | + | chr3_1:69917634-69917653 | None:intergenic | 45.0% | |
| GGTTGTGAGAGCTTCATCAT+GGG | - | chr3_1:69917774-69917793 | Msa0371720:exon | 45.0% | |
| TACGGCCGGGATTTATTGAA+TGG | - | chr3_1:69918026-69918045 | Msa0371720:intron | 45.0% | |
| ! | GCGTGCCATTCAATAAATCC+CGG | + | chr3_1:69918034-69918053 | None:intergenic | 45.0% |
| TTGAGGAAGAAGGAACGAGA+TGG | + | chr3_1:69918093-69918112 | None:intergenic | 45.0% | |
| ACACACACGATTGAGGAAGA+AGG | + | chr3_1:69918103-69918122 | None:intergenic | 45.0% | |
| CTTCCTCAATCGTGTGTGTT+TGG | - | chr3_1:69918104-69918123 | Msa0371720:intron | 45.0% | |
| AACCCAAACACACACGATTG+AGG | + | chr3_1:69918110-69918129 | None:intergenic | 45.0% | |
| TCAATCGTGTGTGTTTGGGT+TGG | - | chr3_1:69918109-69918128 | Msa0371720:intron | 45.0% | |
| CTCAAATTAGAGGCCCTGTT+TGG | + | chr3_1:69918450-69918469 | None:intergenic | 45.0% | |
| GCTGGCATTGCTCAAATTAG+AGG | + | chr3_1:69918460-69918479 | None:intergenic | 45.0% | |
| !! | TGTTATGATGGACAGTGGAC+AGG | - | chr3_1:69918664-69918683 | Msa0371720:CDS | 45.0% |
| ACCACTAAGGATAGGTAACC+AGG | - | chr3_1:69918787-69918806 | Msa0371720:intron | 45.0% | |
| ACCTGGTTACCTATCCTTAG+TGG | + | chr3_1:69918791-69918810 | None:intergenic | 45.0% | |
| ACAAGGGTAAGTTACCTGAC+AGG | - | chr3_1:69919219-69919238 | Msa0371720:CDS | 45.0% | |
| TGACTCAACACTAACCTGTC+AGG | + | chr3_1:69919236-69919255 | None:intergenic | 45.0% | |
| TGGCTATTACTGATGGCAAG+TGG | - | chr3_1:69919445-69919464 | Msa0371720:CDS | 45.0% | |
| CATACAGCTGTAGCAACATG+TGG | - | chr3_1:69919894-69919913 | Msa0371720:intron | 45.0% | |
| ! | CATGATGATGTCTGGGAATG+TGG | + | chr3_1:69919997-69920016 | None:intergenic | 45.0% |
| ! | TGCATTGGCAAGTGATAGAG+TGG | + | chr3_1:69920041-69920060 | None:intergenic | 45.0% |
| AGAAGTTTCTCAGAGGGACT+TGG | + | chr3_1:69920069-69920088 | None:intergenic | 45.0% | |
| ! | GTCCCTCTGAGAAACTTCTA+TGG | - | chr3_1:69920070-69920089 | Msa0371720:intron | 45.0% |
| GGACCATAGAAGTTTCTCAG+AGG | + | chr3_1:69920076-69920095 | None:intergenic | 45.0% | |
| TTGTTGCAACTCTGTGTCTG+AGG | + | chr3_1:69920106-69920125 | None:intergenic | 45.0% | |
| CAGACACAGAGTTGCAACAA+AGG | - | chr3_1:69920106-69920125 | Msa0371720:intron | 45.0% | |
| !! | TGACTGTGGTTTCTGGTTTC+TGG | + | chr3_1:69920247-69920266 | None:intergenic | 45.0% |
| TACCCTACTCTTTAACGCTC+TGG | - | chr3_1:69920533-69920552 | Msa0371720:intron | 45.0% | |
| TCCAATGAAGACTCAAGTGG+AGG | + | chr3_1:69920559-69920578 | None:intergenic | 45.0% | |
| CTTCGTGAGTATGACCATGA+TGG | - | chr3_1:69920738-69920757 | Msa0371720:intron | 45.0% | |
| ACCATGATGGTTCAAAAGCG+AGG | - | chr3_1:69920751-69920770 | Msa0371720:intron | 45.0% | |
| !! | TCCTCGCTTTTGAACCATCA+TGG | + | chr3_1:69920755-69920774 | None:intergenic | 45.0% |
| AAGTCATCAGACACAGTGAG+TGG | - | chr3_1:69920799-69920818 | Msa0371720:intron | 45.0% | |
| TAGGATCTGGCAATAGCTTC+TGG | + | chr3_1:69921587-69921606 | None:intergenic | 45.0% | |
| GGCTCTTTGACACAATGTCT+AGG | + | chr3_1:69921606-69921625 | None:intergenic | 45.0% | |
| CAAGTCTATCAAGGATGTGG+CGG | + | chr3_1:69921627-69921646 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTAAATTAAGATT+TGG | - | chr3_1:69917969-69917988 | Msa0371720:intron | 5.0% |
| CCTTGTGTGTGAACCAGAAC+CGG | - | chr3_1:69917552-69917571 | Msa0371720:three_prime_UTR | 50.0% | |
| !! | GTGTGAACCAGAACCGGTTT+TGG | - | chr3_1:69917558-69917577 | Msa0371720:three_prime_UTR | 50.0% |
| CCAGAACTCGAACCCAAAAC+CGG | + | chr3_1:69917574-69917593 | None:intergenic | 50.0% | |
| !!! | CGGTTTTGGGTTCGAGTTCT+GGG | - | chr3_1:69917572-69917591 | Msa0371720:three_prime_UTR | 50.0% |
| !!! | GGTTTTGGGTTCGAGTTCTG+GGG | - | chr3_1:69917573-69917592 | Msa0371720:three_prime_UTR | 50.0% |
| !! | GTTCTGGGGAAGAGATGAAC+CGG | - | chr3_1:69917587-69917606 | Msa0371720:three_prime_UTR | 50.0% |
| ! | TTGAGATTCTGGGAAGGAGC+TGG | - | chr3_1:69917679-69917698 | Msa0371720:three_prime_UTR | 50.0% |
| GGTTGTGAGAGCTTTGCCAT+GGG | - | chr3_1:69917705-69917724 | Msa0371720:three_prime_UTR | 50.0% | |
| TAGATCGCCGATGAATCGTG+CGG | - | chr3_1:69917753-69917772 | Msa0371720:three_prime_UTR | 50.0% | |
| CTCACAACCGCACGATTCAT+CGG | + | chr3_1:69917763-69917782 | None:intergenic | 50.0% | |
| CGGTTGTGAGAGCTTCATCA+TGG | - | chr3_1:69917773-69917792 | Msa0371720:exon | 50.0% | |
| ! | CTTCATCGGATTTGGTCGGA+CGG | - | chr3_1:69917814-69917833 | Msa0371720:CDS | 50.0% |
| TTGACTGGGTTGTGAGTGGA+TGG | - | chr3_1:69917848-69917867 | Msa0371720:CDS | 50.0% | |
| GTATGAAGAGGTGAACTGGC+CGG | - | chr3_1:69917882-69917901 | Msa0371720:CDS | 50.0% | |
| TATGAAGAGGTGAACTGGCC+GGG | - | chr3_1:69917883-69917902 | Msa0371720:CDS | 50.0% | |
| CATTCATGCGATCATACGGC+CGG | - | chr3_1:69918012-69918031 | Msa0371720:intron | 50.0% | |
| ATTCATGCGATCATACGGCC+GGG | - | chr3_1:69918013-69918032 | Msa0371720:intron | 50.0% | |
| CTAGGCAACCCTACCTATCA+TGG | + | chr3_1:69919002-69919021 | None:intergenic | 50.0% | |
| AGACACTATCCTGCAACCCA+TGG | + | chr3_1:69919036-69919055 | None:intergenic | 50.0% | |
| AGCTGTAGCAACATGTGGTC+AGG | - | chr3_1:69919899-69919918 | Msa0371720:intron | 50.0% | |
| GGAATGTGGTACGAGCAACT+GGG | + | chr3_1:69919983-69920002 | None:intergenic | 50.0% | |
| ! | CGTTGGGCATGATGATGTCT+GGG | + | chr3_1:69920004-69920023 | None:intergenic | 50.0% |
| ! | TCGTTGGGCATGATGATGTC+TGG | + | chr3_1:69920005-69920024 | None:intergenic | 50.0% |
| AGGGACTTGGCTATCTGCAT+TGG | + | chr3_1:69920056-69920075 | None:intergenic | 50.0% | |
| CTCTGTGTCTGAGGAAGACT+TGG | + | chr3_1:69920097-69920116 | None:intergenic | 50.0% | |
| GCAGATGTGAAAGCGGCATT+TGG | - | chr3_1:69920340-69920359 | Msa0371720:intron | 50.0% | |
| TGGGCTGCTCTACGTAGAAA+GGG | - | chr3_1:69920469-69920488 | Msa0371720:intron | 50.0% | |
| ! | GGCCAGAGCGTTAAAGAGTA+GGG | + | chr3_1:69920538-69920557 | None:intergenic | 50.0% |
| ! | AGGCCAGAGCGTTAAAGAGT+AGG | + | chr3_1:69920539-69920558 | None:intergenic | 50.0% |
| GCCTCCACTTGAGTCTTCAT+TGG | - | chr3_1:69920555-69920574 | Msa0371720:intron | 50.0% | |
| ATTTCTTCAGCTGTGCCACC+TGG | + | chr3_1:69920989-69921008 | None:intergenic | 50.0% | |
| AGAGCCATTGAGTCTTGCAG+AGG | - | chr3_1:69921212-69921231 | Msa0371720:intron | 50.0% | |
| GGCAATAGCTTCTGGTCAAG+TGG | + | chr3_1:69921579-69921598 | None:intergenic | 50.0% | |
| ! | CACCCACCAACCTGTCTTTT+TGG | - | chr3_1:69921751-69921770 | Msa0371720:five_prime_UTR | 50.0% |
| !! | CCGGTTCTGGTTCACACACA+AGG | + | chr3_1:69917555-69917574 | None:intergenic | 55.0% |
| ! | CTCGAACCCAAAACCGGTTC+TGG | + | chr3_1:69917568-69917587 | None:intergenic | 55.0% |
| !!! | CCGGTTTTGGGTTCGAGTTC+TGG | - | chr3_1:69917571-69917590 | Msa0371720:three_prime_UTR | 55.0% |
| ! | ATTCTGGGAAGGAGCTGGTG+CGG | - | chr3_1:69917684-69917703 | Msa0371720:three_prime_UTR | 55.0% |
| CGGTTGTGAGAGCTTTGCCA+TGG | - | chr3_1:69917704-69917723 | Msa0371720:three_prime_UTR | 55.0% | |
| GACGAATCACAACTCGCCCA+TGG | + | chr3_1:69917724-69917743 | None:intergenic | 55.0% | |
| GTGGTTGACTGGGTTGTGAG+TGG | - | chr3_1:69917844-69917863 | Msa0371720:CDS | 55.0% | |
| GGATCCACAACACAGTGCTG+CGG | - | chr3_1:69918130-69918149 | Msa0371720:intron | 55.0% | |
| GGGAATGTGGTACGAGCAAC+TGG | + | chr3_1:69919984-69920003 | None:intergenic | 55.0% | |
| !! | GTGGTGGGCAGATGTGAAAG+CGG | - | chr3_1:69920333-69920352 | Msa0371720:intron | 55.0% |
| CTGGGCTGCTCTACGTAGAA+AGG | - | chr3_1:69920468-69920487 | Msa0371720:intron | 55.0% | |
| ACTGCAGGAGTGAAGAAGCC+AGG | - | chr3_1:69920968-69920987 | Msa0371720:intron | 55.0% | |
| GGCTCCTCTGCAAGACTCAA+TGG | + | chr3_1:69921219-69921238 | None:intergenic | 55.0% | |
| ! | GATTTGGTCGGACGGCGTGA+GGG | - | chr3_1:69917822-69917841 | Msa0371720:CDS | 60.0% |
| GCAGGAGTGAAGAAGCCAGG+TGG | - | chr3_1:69920971-69920990 | Msa0371720:intron | 60.0% | |
| ! | GGATTTGGTCGGACGGCGTG+AGG | - | chr3_1:69917821-69917840 | Msa0371720:CDS | 65.0% |
| ACGGCGTGAGGGTGGTTGAC+TGG | - | chr3_1:69917833-69917852 | Msa0371720:CDS | 65.0% | |
| CGGCGTGAGGGTGGTTGACT+GGG | - | chr3_1:69917834-69917853 | Msa0371720:CDS | 65.0% | |
| GAAGAGGTGAACTGGCCGGG+TGG | - | chr3_1:69917886-69917905 | Msa0371720:intron | 65.0% | |
| AGGTGAACTGGCCGGGTGGA+CGG | - | chr3_1:69917890-69917909 | Msa0371720:intron | 65.0% | |
| ATCCTCTCCAGCCGTCCACC+CGG | + | chr3_1:69917904-69917923 | None:intergenic | 65.0% | |
| GACGCCGCAGCACTGTGTTG+TGG | + | chr3_1:69918137-69918156 | None:intergenic | 65.0% | |
| TTGGTCGGACGGCGTGAGGG+TGG | - | chr3_1:69917825-69917844 | Msa0371720:CDS | 70.0% | |
| GAACTGGCCGGGTGGACGGC+TGG | - | chr3_1:69917894-69917913 | Msa0371720:intron | 75.0% | |
| ! | GGCCGGGTGGACGGCTGGAG+AGG | - | chr3_1:69917899-69917918 | Msa0371720:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 69917538 | 69921888 | 69917538 | ID=Msa0371720;Name=Msa0371720 |
| chr3_1 | mRNA | 69917538 | 69921888 | 69917538 | ID=Msa0371720-mRNA-1;Parent=Msa0371720;Name=Msa0371720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=690|1|1|1|0.57|0.5|8|250|352 |
| chr3_1 | exon | 69917538 | 69917904 | 69917538 | ID=Msa0371720-mRNA-1:exon:15043;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69918172 | 69918279 | 69918172 | ID=Msa0371720-mRNA-1:exon:15042;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69918378 | 69918451 | 69918378 | ID=Msa0371720-mRNA-1:exon:15041;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69918613 | 69918690 | 69918613 | ID=Msa0371720-mRNA-1:exon:15040;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69918795 | 69919544 | 69918795 | ID=Msa0371720-mRNA-1:exon:15039;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69920186 | 69920216 | 69920186 | ID=Msa0371720-mRNA-1:exon:15038;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69921252 | 69921510 | 69921252 | ID=Msa0371720-mRNA-1:exon:15037;Parent=Msa0371720-mRNA-1 |
| chr3_1 | exon | 69921557 | 69921888 | 69921557 | ID=Msa0371720-mRNA-1:exon:15036;Parent=Msa0371720-mRNA-1 |
| chr3_1 | five_prime_UTR | 69921557 | 69921888 | 69921557 | ID=Msa0371720-mRNA-1:five_prime_utr;Parent=Msa0371720-mRNA-1 |
| chr3_1 | five_prime_UTR | 69921252 | 69921510 | 69921252 | ID=Msa0371720-mRNA-1:five_prime_utr;Parent=Msa0371720-mRNA-1 |
| chr3_1 | five_prime_UTR | 69920186 | 69920216 | 69920186 | ID=Msa0371720-mRNA-1:five_prime_utr;Parent=Msa0371720-mRNA-1 |
| chr3_1 | five_prime_UTR | 69919477 | 69919544 | 69919477 | ID=Msa0371720-mRNA-1:five_prime_utr;Parent=Msa0371720-mRNA-1 |
| chr3_1 | CDS | 69918795 | 69919476 | 69918795 | ID=Msa0371720-mRNA-1:cds;Parent=Msa0371720-mRNA-1 |
| chr3_1 | CDS | 69918613 | 69918690 | 69918613 | ID=Msa0371720-mRNA-1:cds;Parent=Msa0371720-mRNA-1 |
| chr3_1 | CDS | 69918378 | 69918451 | 69918378 | ID=Msa0371720-mRNA-1:cds;Parent=Msa0371720-mRNA-1 |
| chr3_1 | CDS | 69918172 | 69918279 | 69918172 | ID=Msa0371720-mRNA-1:cds;Parent=Msa0371720-mRNA-1 |
| chr3_1 | CDS | 69917788 | 69917904 | 69917788 | ID=Msa0371720-mRNA-1:cds;Parent=Msa0371720-mRNA-1 |
| chr3_1 | three_prime_UTR | 69917538 | 69917787 | 69917538 | ID=Msa0371720-mRNA-1:three_prime_utr;Parent=Msa0371720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
