AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303810 MtrunA17_Chr4g0070201 95.257 253 12 0 1 253 1 253 1.08e-174 481
Msa1303810 MtrunA17_Chr2g0301241 76.378 254 59 1 1 253 1 254 5.23e-142 398
Msa1303810 MtrunA17_Chr3g0139681 37.895 95 57 2 158 252 3 95 8.36e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303810 AT5G20720.1 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1303810 AT5G20720.2 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1303810 AT5G20720.4 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1303810 AT5G20720.3 75.294 255 59 2 1 253 1 253 1.25e-135 382

Find 74 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTATCCTCTCTTAATTT+TGG 0.185301 8_3:-67113171 Msa1303810:exon
ATAAAACCCAAATCTATCTT+AGG 0.191322 8_3:-67115416 Msa1303810:five_prime_UTR
GAAGTCATTCCCTGCATATT+TGG 0.259970 8_3:+67113243 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8_3:+67113273 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8_3:-67115108 Msa1303810:CDS
CACGAACGAAGCTTACAAAA+TGG 0.352042 8_3:+67115369 None:intergenic
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8_3:+67113280 None:intergenic
CGTGGCACACTTTGTTGATA+AGG 0.388179 8_3:-67115350 Msa1303810:intron
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8_3:+67113970 None:intergenic
AGGAACCTTTCTTCCTTTGA+AGG 0.413360 8_3:-67115156 Msa1303810:CDS
GGAGTACAAAACTGTATTCC+CGG 0.420138 8_3:+67113264 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8_3:+67113946 None:intergenic
TAAAACCCAAATCTATCTTA+GGG 0.442509 8_3:-67115415 Msa1303810:five_prime_UTR
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8_3:+67113313 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8_3:+67114257 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8_3:+67113307 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8_3:-67113331 Msa1303810:CDS
GAATGACAGAGTCTTGATAA+AGG 0.473936 8_3:-67113942 Msa1303810:intron
TAATTTACTAAACATCCATC+TGG 0.481409 8_3:+67112917 None:intergenic
TTAAGAACAACACATTTCAA+TGG 0.489464 8_3:-67115214 Msa1303810:exon
GCAATCCTTCAAAGGAAGAA+AGG 0.496887 8_3:+67115151 None:intergenic
ACGAACGAAGCTTACAAAAT+GGG 0.497890 8_3:+67115370 None:intergenic
GCCAATGGATGGCTTATCCT+TGG 0.505865 8_3:+67113708 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8_3:-67113229 Msa1303810:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8_3:-67113737 Msa1303810:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8_3:+67113947 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8_3:-67114250 Msa1303810:CDS
GAATCATATGCATGTTTGAT+CGG 0.537354 8_3:-67112880 Msa1303810:three_prime_UTR
GTTGGAGACGGAAAGACAGT+TGG 0.541212 8_3:-67114212 Msa1303810:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8_3:+67113697 None:intergenic
TTGGAGACGGAAAGACAGTT+GGG 0.547663 8_3:-67114211 Msa1303810:CDS
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8_3:+67113693 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8_3:-67114043 Msa1303810:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8_3:-67113323 Msa1303810:CDS
GGAAGTTCGCAATCCTTCAA+AGG 0.561777 8_3:+67115143 None:intergenic
GCGGCTTTAACAACAATAGA+CGG 0.565089 8_3:+67115063 None:intergenic
GAGGTAGTTGCTGTTGGAGA+CGG 0.565613 8_3:-67114224 Msa1303810:CDS
TTCAAAACATCTTATACTGA+AGG 0.568271 8_3:-67114020 Msa1303810:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8_3:-67114341 Msa1303810:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8_3:-67113709 Msa1303810:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8_3:-67113238 Msa1303810:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8_3:-67113191 Msa1303810:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8_3:+67113265 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8_3:-67114004 Msa1303810:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8_3:-67114249 Msa1303810:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8_3:-67113330 Msa1303810:CDS
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8_3:-67114053 Msa1303810:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8_3:-67114251 Msa1303810:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8_3:-67114064 Msa1303810:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8_3:-67113283 Msa1303810:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8_3:+67115064 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8_3:-67114294 Msa1303810:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8_3:+67114326 None:intergenic
AAAATGGGAAGAAACGTGAC+AGG 0.607222 8_3:+67115385 None:intergenic
GAATTGGTATTCTTACACAA+AGG 0.614844 8_3:-67115092 Msa1303810:CDS
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8_3:-67113313 Msa1303810:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8_3:+67113164 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.624864 8_3:-67114183 Msa1303810:intron
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8_3:-67113725 Msa1303810:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8_3:+67113183 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8_3:+67115108 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8_3:-67113282 Msa1303810:CDS
GTTACGAGGAAAATGAATTG+CGG 0.642882 8_3:+67115122 None:intergenic
GGATAAGCCATCCATTGGCA+CGG 0.647992 8_3:-67113704 Msa1303810:intron
GATGCAACAGAGATTGTGCA+AGG 0.653011 8_3:+67113040 None:intergenic
CTGCTTCATCGATTTCTACG+AGG 0.656045 8_3:-67115176 Msa1303810:CDS
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8_3:-67113984 Msa1303810:CDS
ATGCATTGAAAACCATGAGA+AGG 0.671326 8_3:+67112986 None:intergenic
GACAGTTGGGAAGAACAAAG+TGG 0.672565 8_3:-67114198 Msa1303810:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8_3:-67113767 Msa1303810:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8_3:-67114293 Msa1303810:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8_3:-67113337 Msa1303810:intron
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8_3:-67114290 Msa1303810:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8_3:-67114248 Msa1303810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATAATACCTT+GGG + chr8_3:67113263-67113282 None:intergenic 10.0%
!! AAAAAATAAAAATAATACCT+TGG + chr8_3:67113264-67113283 None:intergenic 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG - chr8_3:67113263-67113282 Msa1303810:CDS 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG - chr8_3:67113264-67113283 Msa1303810:CDS 10.0%
!!! TTTTCAAAAAATTAAAACAA+TGG - chr8_3:67114733-67114752 Msa1303810:intron 10.0%
!! AAAATAAAAATAATACCTTG+GGG + chr8_3:67113262-67113281 None:intergenic 15.0%
!! CGAAAAATATTCATAAATAT+TGG + chr8_3:67113741-67113760 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG + chr8_3:67114427-67114446 None:intergenic 15.0%
!! AACTGCTAAAAAATTGAAAA+TGG + chr8_3:67113055-67113074 None:intergenic 20.0%
!! AAATAAAAATAATACCTTGG+GGG + chr8_3:67113261-67113280 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG - chr8_3:67113270-67113289 Msa1303810:CDS 20.0%
!!! TACATTTTCTCTTATACTAA+GGG + chr8_3:67113532-67113551 None:intergenic 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG - chr8_3:67113639-67113658 Msa1303810:intron 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG - chr8_3:67113640-67113659 Msa1303810:intron 20.0%
!! GAAAAATATTCAAAAATGGT+GGG + chr8_3:67113715-67113734 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG + chr8_3:67113716-67113735 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG + chr8_3:67113719-67113738 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG + chr8_3:67113924-67113943 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG + chr8_3:67114428-67114447 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG + chr8_3:67114625-67114644 None:intergenic 20.0%
!! CAAAAAATTAAAACAATGGA+TGG - chr8_3:67114737-67114756 Msa1303810:intron 20.0%
!!! TTTTTTTACATATATCCAGA+TGG - chr8_3:67115355-67115374 Msa1303810:five_prime_UTR 20.0%
!!! AGATAGATTTGGGTTTTATT+GGG + chr8_3:67112870-67112889 None:intergenic 25.0%
!!! AAGATAGATTTGGGTTTTAT+TGG + chr8_3:67112871-67112890 None:intergenic 25.0%
! ATAAAACCCAAATCTATCTT+AGG - chr8_3:67112871-67112890 Msa1303810:three_prime_UTR 25.0%
! TAAAACCCAAATCTATCTTA+GGG - chr8_3:67112872-67112891 Msa1303810:three_prime_UTR 25.0%
! AAAAACCCTAAGATAGATTT+GGG + chr8_3:67112880-67112899 None:intergenic 25.0%
! TAAAAACCCTAAGATAGATT+TGG + chr8_3:67112881-67112900 None:intergenic 25.0%
!!! TGATTCTAAGATTAGGTTAA+AGG + chr8_3:67112973-67112992 None:intergenic 25.0%
! TTTCTACAAAATGTAAAGTG+CGG + chr8_3:67112999-67113018 None:intergenic 25.0%
! TTAAGAACAACACATTTCAA+TGG - chr8_3:67113073-67113092 Msa1303810:three_prime_UTR 25.0%
!! ACATTTTCTCTTATACTAAG+GGG + chr8_3:67113531-67113550 None:intergenic 25.0%
!! GTACATTTTCTCTTATACTA+AGG + chr8_3:67113533-67113552 None:intergenic 25.0%
! AACATTAGAAATAATCCCAT+GGG + chr8_3:67113865-67113884 None:intergenic 25.0%
! AAACATTAGAAATAATCCCA+TGG + chr8_3:67113866-67113885 None:intergenic 25.0%
! TGTAATGTATTTCTCTTTAC+AGG - chr8_3:67114189-67114208 Msa1303810:CDS 25.0%
! TTCAAAACATCTTATACTGA+AGG - chr8_3:67114267-67114286 Msa1303810:CDS 25.0%
!! CTTAACCATATTTTGCATTA+AGG - chr8_3:67114441-67114460 Msa1303810:intron 25.0%
! TAACACCTTAATGCAAAATA+TGG + chr8_3:67114449-67114468 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG - chr8_3:67114833-67114852 Msa1303810:intron 25.0%
! AAAATAGCCAAAATTAAGAG+AGG + chr8_3:67115126-67115145 None:intergenic 25.0%
!! TTGTAGAACCTAAATTTTTG+TGG - chr8_3:67115149-67115168 Msa1303810:CDS 25.0%
!!! CAATTTTTTATTTTGCAACG+AGG - chr8_3:67115188-67115207 Msa1303810:CDS 25.0%
!! GTGTTTTGTATTATTGTCAA+CGG - chr8_3:67115271-67115290 Msa1303810:intron 25.0%
! TAATTTACTAAACATCCATC+TGG + chr8_3:67115373-67115392 None:intergenic 25.0%
GAAAATGGAATTAATCTACG+AGG + chr8_3:67113040-67113059 None:intergenic 30.0%
GAATTGGTATTCTTACACAA+AGG - chr8_3:67113195-67113214 Msa1303810:CDS 30.0%
! TGGATTTTCTTCATTATCTG+CGG - chr8_3:67113290-67113309 Msa1303810:CDS 30.0%
GTTGTGTTTATAAGCTATCT+TGG - chr8_3:67113383-67113402 Msa1303810:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG + chr8_3:67113450-67113469 None:intergenic 30.0%
AATAAAAAAAAAGGGCAACC+CGG - chr8_3:67113648-67113667 Msa1303810:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG - chr8_3:67113972-67113991 Msa1303810:CDS 30.0%
CCAAAATAAAAGAAAGACCA+AGG + chr8_3:67114164-67114183 None:intergenic 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG - chr8_3:67114161-67114180 Msa1303810:intron 30.0%
! TTTAAGATCTTTGACCTCTT+CGG + chr8_3:67114320-67114339 None:intergenic 30.0%
! CATTAAGGTGTTACGTTTAA+AGG - chr8_3:67114456-67114475 Msa1303810:intron 30.0%
GCAATGTTATATCGTATGAA+GGG - chr8_3:67114674-67114693 Msa1303810:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG - chr8_3:67114706-67114725 Msa1303810:intron 30.0%
GAATTGCAAGAATGTGATTT+GGG - chr8_3:67114707-67114726 Msa1303810:intron 30.0%
AATTAAAACAATGGATGGTC+TGG - chr8_3:67114742-67114761 Msa1303810:intron 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG - chr8_3:67114891-67114910 Msa1303810:intron 30.0%
GAATGGTTATTTACATACCT+AGG + chr8_3:67114918-67114937 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG - chr8_3:67114927-67114946 Msa1303810:intron 30.0%
! TTTTGTACTCCAAATATGCA+GGG - chr8_3:67115035-67115054 Msa1303810:intron 30.0%
!! CTAAATTTTTGTGGTGTTGA+GGG - chr8_3:67115158-67115177 Msa1303810:CDS 30.0%
TGTAAAAAAACTGTTCTCGT+TGG + chr8_3:67115345-67115364 None:intergenic 30.0%
GAATCATATGCATGTTTGAT+CGG - chr8_3:67115407-67115426 Msa1303810:five_prime_UTR 30.0%
!!! ATTTGGGTTTTATTGGGTGA+CGG + chr8_3:67112864-67112883 None:intergenic 35.0%
ACGAACGAAGCTTACAAAAT+GGG + chr8_3:67112920-67112939 None:intergenic 35.0%
!! GCGGTATTGATTCTAAGATT+AGG + chr8_3:67112980-67112999 None:intergenic 35.0%
GTTACGAGGAAAATGAATTG+CGG + chr8_3:67113168-67113187 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG + chr8_3:67113476-67113495 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG + chr8_3:67113477-67113496 None:intergenic 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG + chr8_3:67113649-67113668 None:intergenic 35.0%
TAAAGGATTCCATAAGCTAG+TGG + chr8_3:67114139-67114158 None:intergenic 35.0%
TTATGGAATCCTTTAAGCCT+TGG - chr8_3:67114144-67114163 Msa1303810:intron 35.0%
AAAGAAAGACCAAGGCTTAA+AGG + chr8_3:67114156-67114175 None:intergenic 35.0%
ATGTATTTCTCTTTACAGGC+AGG - chr8_3:67114193-67114212 Msa1303810:CDS 35.0%
ATCAAGACTCTGTCATTCAA+GGG + chr8_3:67114343-67114362 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG + chr8_3:67114344-67114363 None:intergenic 35.0%
GAATGACAGAGTCTTGATAA+AGG - chr8_3:67114345-67114364 Msa1303810:intron 35.0%
ACCTGCAGCATCATAATTAA+AGG + chr8_3:67114509-67114528 None:intergenic 35.0%
! TAACACCACTCTTCTAAAAG+AGG - chr8_3:67114651-67114670 Msa1303810:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG - chr8_3:67114652-67114671 Msa1303810:intron 35.0%
GGCAATGTTATATCGTATGA+AGG - chr8_3:67114673-67114692 Msa1303810:intron 35.0%
TGTTATATCGTATGAAGGGA+AGG - chr8_3:67114678-67114697 Msa1303810:intron 35.0%
ACTAGCATTATCCCTTAAGA+CGG - chr8_3:67114774-67114793 Msa1303810:intron 35.0%
AACACATTCTACCGTCTTAA+GGG + chr8_3:67114788-67114807 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG + chr8_3:67114935-67114954 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG + chr8_3:67114945-67114964 None:intergenic 35.0%
AAACCATTATCCATTTCACC+CGG - chr8_3:67115004-67115023 Msa1303810:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG - chr8_3:67115034-67115053 Msa1303810:intron 35.0%
AATGACTTCAAAGGCAAAGA+TGG - chr8_3:67115058-67115077 Msa1303810:CDS 35.0%
! TGGCTATCCTCTCTTAATTT+TGG - chr8_3:67115116-67115135 Msa1303810:CDS 35.0%
CCTCAACACCACAAAAATTT+AGG + chr8_3:67115160-67115179 None:intergenic 35.0%
!! CCTAAATTTTTGTGGTGTTG+AGG - chr8_3:67115157-67115176 Msa1303810:CDS 35.0%
ATGCATTGAAAACCATGAGA+AGG + chr8_3:67115304-67115323 None:intergenic 35.0%
AAAATGGGAAGAAACGTGAC+AGG + chr8_3:67112905-67112924 None:intergenic 40.0%
CACGAACGAAGCTTACAAAA+TGG + chr8_3:67112921-67112940 None:intergenic 40.0%
! CATTTTGTAAGCTTCGTTCG+TGG - chr8_3:67112919-67112938 Msa1303810:three_prime_UTR 40.0%
AGGAACCTTTCTTCCTTTGA+AGG - chr8_3:67113131-67113150 Msa1303810:three_prime_UTR 40.0%
GCAATCCTTCAAAGGAAGAA+AGG + chr8_3:67113139-67113158 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG + chr8_3:67113182-67113201 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG - chr8_3:67113179-67113198 Msa1303810:CDS 40.0%
! CGGCTTTAACAACAATAGAC+GGG + chr8_3:67113226-67113245 None:intergenic 40.0%
! GCGGCTTTAACAACAATAGA+CGG + chr8_3:67113227-67113246 None:intergenic 40.0%
AGAAATAATCCCATGGGACA+GGG + chr8_3:67113859-67113878 None:intergenic 40.0%
TAGAAATAATCCCATGGGAC+AGG + chr8_3:67113860-67113879 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG - chr8_3:67113994-67114013 Msa1303810:CDS 40.0%
CAAAGTGGACATTAGTGTGA+AGG - chr8_3:67114104-67114123 Msa1303810:intron 40.0%
GTTGTGTACTCAAAGTATGC+AGG - chr8_3:67114223-67114242 Msa1303810:CDS 40.0%
AAAGTATGCAGGAACTGAAG+TGG - chr8_3:67114234-67114253 Msa1303810:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG - chr8_3:67114303-67114322 Msa1303810:CDS 40.0%
ACAGAGTCTTGATAAAGGTG+TGG - chr8_3:67114350-67114369 Msa1303810:intron 40.0%
GCCTTTAATTATGATGCTGC+AGG - chr8_3:67114505-67114524 Msa1303810:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG + chr8_3:67114659-67114678 None:intergenic 40.0%
CAACACATTCTACCGTCTTA+AGG + chr8_3:67114789-67114808 None:intergenic 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG - chr8_3:67114840-67114859 Msa1303810:intron 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG - chr8_3:67114845-67114864 Msa1303810:intron 40.0%
! CTACTCCTTTTGGATGTAAC+AGG - chr8_3:67114937-67114956 Msa1303810:intron 40.0%
ATGTAACAGGTGATAGCTGT+TGG - chr8_3:67114950-67114969 Msa1303810:intron 40.0%
AACCATTATCCATTTCACCC+GGG - chr8_3:67115005-67115024 Msa1303810:intron 40.0%
GAGTACAAAACTGTATTCCC+GGG + chr8_3:67115025-67115044 None:intergenic 40.0%
GGAGTACAAAACTGTATTCC+CGG + chr8_3:67115026-67115045 None:intergenic 40.0%
GAAGTCATTCCCTGCATATT+TGG + chr8_3:67115047-67115066 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG - chr8_3:67115049-67115068 Msa1303810:CDS 40.0%
CGTGGCACACTTTGTTGATA+AGG - chr8_3:67112937-67112956 Msa1303810:three_prime_UTR 45.0%
!! CTGCTTCATCGATTTCTACG+AGG - chr8_3:67113111-67113130 Msa1303810:three_prime_UTR 45.0%
GGAAGTTCGCAATCCTTCAA+AGG + chr8_3:67113147-67113166 None:intergenic 45.0%
CTACAGCGAGAGATCAAAGT+AGG - chr8_3:67113581-67113600 Msa1303810:intron 45.0%
TATACATAAGCCCTGTCCCA+TGG - chr8_3:67113846-67113865 Msa1303810:intron 45.0%
ATACATAAGCCCTGTCCCAT+GGG - chr8_3:67113847-67113866 Msa1303810:intron 45.0%
CATACAACTGTCAAGCCACT+AGG - chr8_3:67113946-67113965 Msa1303810:CDS 45.0%
ACCAGTACTCTATCACCTAG+TGG + chr8_3:67113964-67113983 None:intergenic 45.0%
GGATGCAGAAGAGAAAACTC+AGG - chr8_3:67113993-67114012 Msa1303810:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG + chr8_3:67114033-67114052 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG - chr8_3:67114036-67114055 Msa1303810:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG - chr8_3:67114037-67114056 Msa1303810:CDS 45.0%
TGCTCAATCAAAGCCTCAAG+GGG - chr8_3:67114038-67114057 Msa1303810:CDS 45.0%
TTGGAGACGGAAAGACAGTT+GGG - chr8_3:67114076-67114095 Msa1303810:CDS 45.0%
GACAGTTGGGAAGAACAAAG+TGG - chr8_3:67114089-67114108 Msa1303810:intron 45.0%
AGTGGACATTAGTGTGAAGG+TGG - chr8_3:67114107-67114126 Msa1303810:intron 45.0%
GTGGACATTAGTGTGAAGGT+GGG - chr8_3:67114108-67114127 Msa1303810:intron 45.0%
GGAACTGAAGTGGAGTTCAA+TGG - chr8_3:67114244-67114263 Msa1303810:CDS 45.0%
CTGAAGGATGATGACATCGT+TGG - chr8_3:67114283-67114302 Msa1303810:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG - chr8_3:67114533-67114552 Msa1303810:intron 45.0%
ACCAAGGATAAGCCATCCAT+TGG - chr8_3:67114578-67114597 Msa1303810:intron 45.0%
AGAAAAGCTTACCGTGCCAA+TGG + chr8_3:67114597-67114616 None:intergenic 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG - chr8_3:67114898-67114917 Msa1303810:intron 45.0%
TTCCCGGGTGAAATGGATAA+TGG + chr8_3:67115010-67115029 None:intergenic 45.0%
AACTGTATTCCCGGGTGAAA+TGG + chr8_3:67115017-67115036 None:intergenic 45.0%
TTTGAGAGCCTCAGATGTCA+TGG - chr8_3:67115096-67115115 Msa1303810:CDS 45.0%
GATGCAACAGAGATTGTGCA+AGG + chr8_3:67115250-67115269 None:intergenic 45.0%
! AACGGCTTTTCACCTTCTCA+TGG - chr8_3:67115289-67115308 Msa1303810:intron 45.0%
TACCTTGGGGGTAACAACAG+TGG + chr8_3:67113249-67113268 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG - chr8_3:67113960-67113979 Msa1303810:CDS 50.0%
GCAGAAGAGAAAACTCAGGG+TGG - chr8_3:67113997-67114016 Msa1303810:CDS 50.0%
GCTCAATCAAAGCCTCAAGG+GGG - chr8_3:67114039-67114058 Msa1303810:CDS 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG - chr8_3:67114063-67114082 Msa1303810:CDS 50.0%
GTTGGAGACGGAAAGACAGT+TGG - chr8_3:67114075-67114094 Msa1303810:CDS 50.0%
! TGGGTGATGCCACTAGCTTA+TGG - chr8_3:67114127-67114146 Msa1303810:intron 50.0%
GGGCAGATCATCAAGACAAC+TGG + chr8_3:67114407-67114426 None:intergenic 50.0%
GCTGAGGAAAAAACTGCTGG+TGG - chr8_3:67114536-67114555 Msa1303810:intron 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG - chr8_3:67114550-67114569 Msa1303810:intron 50.0%
GCCAATGGATGGCTTATCCT+TGG + chr8_3:67114582-67114601 None:intergenic 50.0%
GGATAAGCCATCCATTGGCA+CGG - chr8_3:67114583-67114602 Msa1303810:intron 50.0%
AAGCTTACCGTGCCAATGGA+TGG + chr8_3:67114593-67114612 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG - chr8_3:67114957-67114976 Msa1303810:intron 50.0%
GAGGATAGCCATGACATCTG+AGG + chr8_3:67115107-67115126 None:intergenic 50.0%
CTTGGGGGTAACAACAGTGG+CGG + chr8_3:67113246-67113265 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8_3:67113670-67113689 None:intergenic 55.0%
CACTAAAGCTCCCGCATACG+CGG - chr8_3:67113673-67113692 Msa1303810:intron 55.0%
ACTAAAGCTCCCGCATACGC+GGG - chr8_3:67113674-67113693 Msa1303810:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG - chr8_3:67114044-67114063 Msa1303810:CDS 55.0%
GTTGCTCACGGAAGCAACCA+AGG - chr8_3:67114562-67114581 Msa1303810:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG - chr8_3:67114956-67114975 Msa1303810:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG + chr8_3:67114983-67115002 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG - chr8_3:67113244-67113263 Msa1303810:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8_3:67113669-67113688 None:intergenic 60.0%
CTAAAGCTCCCGCATACGCG+GGG - chr8_3:67113675-67113694 Msa1303810:intron 60.0%
! AAATGGTGGGACCCCCTTCC+CGG + chr8_3:67113702-67113721 None:intergenic 60.0%
GCAACTACCTCACCCCCTTG+AGG + chr8_3:67114054-67114073 None:intergenic 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG - chr8_3:67114057-67114076 Msa1303810:CDS 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG - chr8_3:67114520-67114539 Msa1303810:intron 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG - chr8_3:67114964-67114983 Msa1303810:intron 65.0%
CCTTCGTCATCCACAGGCCC+TGG + chr8_3:67114977-67114996 None:intergenic 65.0%
CCAGGGCCTGTGGATGACGA+AGG - chr8_3:67114974-67114993 Msa1303810:intron 65.0%
TTCCCGGACCCCGCGTATGC+GGG + chr8_3:67113686-67113705 None:intergenic 70.0%
CTTCCCGGACCCCGCGTATG+CGG + chr8_3:67113687-67113706 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG - chr8_3:67113686-67113705 Msa1303810:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG - chr8_3:67113687-67113706 Msa1303810:intron 70.0%
ATACGCGGGGTCCGGGAAGG+GGG - chr8_3:67113688-67113707 Msa1303810:intron 70.0%
GCTCCCGCATACGCGGGGTC+CGG - chr8_3:67113680-67113699 Msa1303810:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG - chr8_3:67113681-67113700 Msa1303810:intron 75.0%
CGCATACGCGGGGTCCGGGA+AGG - chr8_3:67113685-67113704 Msa1303810:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 67112856 67115453 67112856 ID=Msa1303810;Name=Msa1303810
chr8_3 mRNA 67112856 67115453 67112856 ID=Msa1303810-mRNA-1;Parent=Msa1303810;Name=Msa1303810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|0.8|0.66|6|321|253
chr8_3 exon 67112856 67113350 67112856 ID=Msa1303810-mRNA-1:exon:20506;Parent=Msa1303810-mRNA-1
chr8_3 exon 67113705 67113782 67113705 ID=Msa1303810-mRNA-1:exon:20505;Parent=Msa1303810-mRNA-1
chr8_3 exon 67113943 67114098 67113943 ID=Msa1303810-mRNA-1:exon:20504;Parent=Msa1303810-mRNA-1
chr8_3 exon 67114184 67114363 67114184 ID=Msa1303810-mRNA-1:exon:20503;Parent=Msa1303810-mRNA-1
chr8_3 exon 67115044 67115239 67115044 ID=Msa1303810-mRNA-1:exon:20502;Parent=Msa1303810-mRNA-1
chr8_3 exon 67115351 67115453 67115351 ID=Msa1303810-mRNA-1:exon:20501;Parent=Msa1303810-mRNA-1
chr8_3 five_prime_UTR 67115351 67115453 67115351 ID=Msa1303810-mRNA-1:five_prime_utr;Parent=Msa1303810-mRNA-1
chr8_3 five_prime_UTR 67115218 67115239 67115218 ID=Msa1303810-mRNA-1:five_prime_utr;Parent=Msa1303810-mRNA-1
chr8_3 CDS 67115044 67115217 67115044 ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1
chr8_3 CDS 67114184 67114363 67114184 ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1
chr8_3 CDS 67113943 67114098 67113943 ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1
chr8_3 CDS 67113705 67113782 67113705 ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1
chr8_3 CDS 67113177 67113350 67113177 ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1
chr8_3 three_prime_UTR 67112856 67113176 67112856 ID=Msa1303810-mRNA-1:three_prime_utr;Parent=Msa1303810-mRNA-1
Gene Sequence

>Msa1303810

ATGGCGACTACTCAGCTTACTGCTTCATCGATTTCTACGAGGAACCTTTCTTCCTTTGAAGGATTGCGAACTTCCGCAATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGAAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA

Protein sequence

>Msa1303810

MATTQLTASSISTRNLSSFEGLRTSAIHFPRNNARIGILTQRSFPSIVVKAATVVTPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAVGDGKTVGKNKVDISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSISPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS*