Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1303810 | sp|O65282|CH20_ARATH | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.22e-134 | 382 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1303810 | G7JS70 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 5.61e-171 | 481 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017940 | Msa1303810 | 0.816647 | 4.964913e-52 | -8.615850e-47 |
Msa0043680 | Msa1303810 | 0.803055 | 4.184302e-49 | -8.615850e-47 |
Msa0050580 | Msa1303810 | 0.830509 | 2.822269e-55 | -8.615850e-47 |
Msa0077910 | Msa1303810 | 0.817207 | 3.716050e-52 | -8.615850e-47 |
Msa0092180 | Msa1303810 | 0.851923 | 6.467137e-61 | -8.615850e-47 |
Msa0092660 | Msa1303810 | 0.822270 | 2.590760e-53 | -8.615850e-47 |
Msa0092730 | Msa1303810 | 0.813081 | 3.065139e-51 | -8.615850e-47 |
Msa0112290 | Msa1303810 | 0.800245 | 1.577621e-48 | -8.615850e-47 |
Msa0639370 | Msa1303810 | 0.839075 | 1.967708e-57 | -8.615850e-47 |
Msa0661470 | Msa1303810 | 0.847962 | 8.295587e-60 | -8.615850e-47 |
Msa0667970 | Msa1303810 | 0.809479 | 1.854473e-50 | -8.615850e-47 |
Msa0682460 | Msa1303810 | 0.862043 | 6.700894e-64 | -8.615850e-47 |
Msa0703760 | Msa1303810 | 0.833411 | 5.415502e-56 | -8.615850e-47 |
Msa0761790 | Msa1303810 | 0.810311 | 1.227913e-50 | -8.615850e-47 |
Msa0790180 | Msa1303810 | 0.820310 | 7.339753e-53 | -8.615850e-47 |
Msa0804110 | Msa1303810 | 0.820414 | 6.946921e-53 | -8.615850e-47 |
Msa0125800 | Msa1303810 | 0.818200 | 2.219217e-52 | -8.615850e-47 |
Msa0131440 | Msa1303810 | 0.813437 | 2.561331e-51 | -8.615850e-47 |
Msa0141830 | Msa1303810 | 0.827500 | 1.511997e-54 | -8.615850e-47 |
Msa0157350 | Msa1303810 | 0.822659 | 2.104446e-53 | -8.615850e-47 |
Msa0170440 | Msa1303810 | 0.817360 | 3.433937e-52 | -8.615850e-47 |
Msa0177280 | Msa1303810 | 0.850375 | 1.768323e-60 | -8.615850e-47 |
Msa0203520 | Msa1303810 | 0.821913 | 3.135760e-53 | -8.615850e-47 |
Msa1235140 | Msa1303810 | 0.830430 | 2.949153e-55 | -8.615850e-47 |
Msa1258940 | Msa1303810 | 0.813668 | 2.277677e-51 | -8.615850e-47 |
Msa1271600 | Msa1303810 | 0.804438 | 2.160346e-49 | -8.615850e-47 |
Msa1272200 | Msa1303810 | 0.816667 | 4.913544e-52 | -8.615850e-47 |
Msa1276840 | Msa1303810 | 0.823370 | 1.436743e-53 | -8.615850e-47 |
Msa1303750 | Msa1303810 | 0.981523 | 8.526109e-153 | -8.615850e-47 |
Msa1303810 | Msa1363080 | 0.972276 | 1.677150e-134 | -8.615850e-47 |
Msa1303810 | Msa1365870 | 0.829346 | 5.419038e-55 | -8.615850e-47 |
Msa1303810 | Msa1398840 | 0.834529 | 2.843321e-56 | -8.615850e-47 |
Msa1303810 | Msa1405770 | 0.802430 | 5.630316e-49 | -8.615850e-47 |
Msa1303810 | Msa1407710 | 0.811378 | 7.212499e-51 | -8.615850e-47 |
Msa1303810 | Msa1416460 | 0.805284 | 1.437728e-49 | -8.615850e-47 |
Msa1303810 | Msa1438360 | 0.846371 | 2.265177e-59 | -8.615850e-47 |
Msa0367370 | Msa1303810 | 0.814163 | 1.771641e-51 | -8.615850e-47 |
Msa0371720 | Msa1303810 | 0.825333 | 4.962267e-54 | -8.615850e-47 |
Msa0379450 | Msa1303810 | 0.804746 | 1.862724e-49 | -8.615850e-47 |
Msa0386270 | Msa1303810 | 0.837170 | 6.087849e-57 | -8.615850e-47 |
Msa0415880 | Msa1303810 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
Msa0436090 | Msa1303810 | 0.845020 | 5.268356e-59 | -8.615850e-47 |
Msa1072080 | Msa1303810 | 0.804157 | 2.471826e-49 | -8.615850e-47 |
Msa1074730 | Msa1303810 | 0.801819 | 7.519790e-49 | -8.615850e-47 |
Msa1084150 | Msa1303810 | 0.805832 | 1.103273e-49 | -8.615850e-47 |
Msa0280140 | Msa1303810 | 0.805668 | 1.194331e-49 | -8.615850e-47 |
Msa0289780 | Msa1303810 | 0.803150 | 3.999012e-49 | -8.615850e-47 |
Msa0323990 | Msa1303810 | 0.823685 | 1.212628e-53 | -8.615850e-47 |
Msa0327550 | Msa1303810 | 0.807778 | 4.281235e-50 | -8.615850e-47 |
Msa1126310 | Msa1303810 | 0.824108 | 9.651514e-54 | -8.615850e-47 |
Msa1127510 | Msa1303810 | 0.805898 | 1.068966e-49 | -8.615850e-47 |
Msa1167160 | Msa1303810 | 0.810376 | 1.188982e-50 | -8.615850e-47 |
Msa1197110 | Msa1303810 | 0.808799 | 2.593679e-50 | -8.615850e-47 |
Msa1208750 | Msa1303810 | 0.806311 | 8.750401e-50 | -8.615850e-47 |
Msa1209150 | Msa1303810 | 0.948492 | 8.477323e-107 | -8.615850e-47 |
Msa1219250 | Msa1303810 | 0.809034 | 2.309828e-50 | -8.615850e-47 |
Msa0482960 | Msa1303810 | 0.827705 | 1.349787e-54 | -8.615850e-47 |
Msa0485280 | Msa1303810 | 0.802921 | 4.458805e-49 | -8.615850e-47 |
Msa0506760 | Msa1303810 | 0.848072 | 7.737833e-60 | -8.615850e-47 |
Msa0511940 | Msa1303810 | 0.820582 | 6.357924e-53 | -8.615850e-47 |
Msa0532840 | Msa1303810 | 0.838656 | 2.525729e-57 | -8.615850e-47 |
Msa0533010 | Msa1303810 | 0.828701 | 7.766169e-55 | -8.615850e-47 |
Msa0567290 | Msa1303810 | 0.832547 | 8.884564e-56 | -8.615850e-47 |
Msa0581460 | Msa1303810 | 0.816132 | 6.474150e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1303810 | MtrunA17_Chr4g0070201 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.08e-174 | 481 |
Msa1303810 | MtrunA17_Chr2g0301241 | 76.378 | 254 | 59 | 1 | 1 | 253 | 1 | 254 | 5.23e-142 | 398 |
Msa1303810 | MtrunA17_Chr3g0139681 | 37.895 | 95 | 57 | 2 | 158 | 252 | 3 | 95 | 8.36e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1303810 | AT5G20720.1 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
Msa1303810 | AT5G20720.2 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
Msa1303810 | AT5G20720.4 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
Msa1303810 | AT5G20720.3 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
Find 74 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCTATCCTCTCTTAATTT+TGG | 0.185301 | 8_3:-67113171 | Msa1303810:exon |
ATAAAACCCAAATCTATCTT+AGG | 0.191322 | 8_3:-67115416 | Msa1303810:five_prime_UTR |
GAAGTCATTCCCTGCATATT+TGG | 0.259970 | 8_3:+67113243 | None:intergenic |
AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | 8_3:+67113273 | None:intergenic |
CCTCGTAACAATGCTAGAAT+TGG | 0.335567 | 8_3:-67115108 | Msa1303810:CDS |
CACGAACGAAGCTTACAAAA+TGG | 0.352042 | 8_3:+67115369 | None:intergenic |
TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | 8_3:+67113280 | None:intergenic |
CGTGGCACACTTTGTTGATA+AGG | 0.388179 | 8_3:-67115350 | Msa1303810:intron |
TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | 8_3:+67113970 | None:intergenic |
AGGAACCTTTCTTCCTTTGA+AGG | 0.413360 | 8_3:-67115156 | Msa1303810:CDS |
GGAGTACAAAACTGTATTCC+CGG | 0.420138 | 8_3:+67113264 | None:intergenic |
TATCAAGACTCTGTCATTCA+AGG | 0.421253 | 8_3:+67113946 | None:intergenic |
TAAAACCCAAATCTATCTTA+GGG | 0.442509 | 8_3:-67115415 | Msa1303810:five_prime_UTR |
CCTTCGTCATCCACAGGCCC+TGG | 0.444066 | 8_3:+67113313 | None:intergenic |
GGCTTTGATTGAGCAGTTGA+TGG | 0.449739 | 8_3:+67114257 | None:intergenic |
CTGTTGCCTTCGTCATCCAC+AGG | 0.452383 | 8_3:+67113307 | None:intergenic |
CAGGTGATAGCTGTTGGTCC+AGG | 0.460455 | 8_3:-67113331 | Msa1303810:CDS |
GAATGACAGAGTCTTGATAA+AGG | 0.473936 | 8_3:-67113942 | Msa1303810:intron |
TAATTTACTAAACATCCATC+TGG | 0.481409 | 8_3:+67112917 | None:intergenic |
TTAAGAACAACACATTTCAA+TGG | 0.489464 | 8_3:-67115214 | Msa1303810:exon |
GCAATCCTTCAAAGGAAGAA+AGG | 0.496887 | 8_3:+67115151 | None:intergenic |
ACGAACGAAGCTTACAAAAT+GGG | 0.497890 | 8_3:+67115370 | None:intergenic |
GCCAATGGATGGCTTATCCT+TGG | 0.505865 | 8_3:+67113708 | None:intergenic |
AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | 8_3:-67113229 | Msa1303810:CDS |
TGCTGGTGGTTTGTTGCTCA+CGG | 0.524264 | 8_3:-67113737 | Msa1303810:CDS |
ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | 8_3:+67113947 | None:intergenic |
CTGCTCAATCAAAGCCTCAA+GGG | 0.533192 | 8_3:-67114250 | Msa1303810:CDS |
GAATCATATGCATGTTTGAT+CGG | 0.537354 | 8_3:-67112880 | Msa1303810:three_prime_UTR |
GTTGGAGACGGAAAGACAGT+TGG | 0.541212 | 8_3:-67114212 | Msa1303810:CDS |
AAGCTTACCGTGCCAATGGA+TGG | 0.542126 | 8_3:+67113697 | None:intergenic |
TTGGAGACGGAAAGACAGTT+GGG | 0.547663 | 8_3:-67114211 | Msa1303810:CDS |
AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | 8_3:+67113693 | None:intergenic |
GGAACTGAAGTGGAGTTCAA+TGG | 0.549387 | 8_3:-67114043 | Msa1303810:CDS |
AGCTGTTGGTCCAGGGCCTG+TGG | 0.552111 | 8_3:-67113323 | Msa1303810:CDS |
GGAAGTTCGCAATCCTTCAA+AGG | 0.561777 | 8_3:+67115143 | None:intergenic |
GCGGCTTTAACAACAATAGA+CGG | 0.565089 | 8_3:+67115063 | None:intergenic |
GAGGTAGTTGCTGTTGGAGA+CGG | 0.565613 | 8_3:-67114224 | Msa1303810:CDS |
TTCAAAACATCTTATACTGA+AGG | 0.568271 | 8_3:-67114020 | Msa1303810:CDS |
CATACAACTGTCAAGCCACT+AGG | 0.568378 | 8_3:-67114341 | Msa1303810:CDS |
ACCAAGGATAAGCCATCCAT+TGG | 0.568643 | 8_3:-67113709 | Msa1303810:CDS |
TATGCAGGGAATGACTTCAA+AGG | 0.569312 | 8_3:-67113238 | Msa1303810:CDS |
TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | 8_3:-67113191 | Msa1303810:CDS |
GAGTACAAAACTGTATTCCC+GGG | 0.572521 | 8_3:+67113265 | None:intergenic |
CTGAAGGATGATGACATCGT+TGG | 0.572824 | 8_3:-67114004 | Msa1303810:CDS |
TGCTCAATCAAAGCCTCAAG+GGG | 0.578517 | 8_3:-67114249 | Msa1303810:CDS |
AGGTGATAGCTGTTGGTCCA+GGG | 0.579593 | 8_3:-67113330 | Msa1303810:CDS |
AAAGTATGCAGGAACTGAAG+TGG | 0.581171 | 8_3:-67114053 | Msa1303810:CDS |
ACTGCTCAATCAAAGCCTCA+AGG | 0.582194 | 8_3:-67114251 | Msa1303810:CDS |
GTTGTGTACTCAAAGTATGC+AGG | 0.590902 | 8_3:-67114064 | Msa1303810:CDS |
AAACCATTATCCATTTCACC+CGG | 0.592297 | 8_3:-67113283 | Msa1303810:CDS |
CGGCTTTAACAACAATAGAC+GGG | 0.595648 | 8_3:+67115064 | None:intergenic |
GGATGCAGAAGAGAAAACTC+AGG | 0.597980 | 8_3:-67114294 | Msa1303810:CDS |
ACCAGTACTCTATCACCTAG+TGG | 0.604909 | 8_3:+67114326 | None:intergenic |
AAAATGGGAAGAAACGTGAC+AGG | 0.607222 | 8_3:+67115385 | None:intergenic |
GAATTGGTATTCTTACACAA+AGG | 0.614844 | 8_3:-67115092 | Msa1303810:CDS |
CCAGGGCCTGTGGATGACGA+AGG | 0.620963 | 8_3:-67113313 | Msa1303810:CDS |
AAAATAGCCAAAATTAAGAG+AGG | 0.622578 | 8_3:+67113164 | None:intergenic |
CAAAGTGGACATTAGTGTGA+AGG | 0.624864 | 8_3:-67114183 | Msa1303810:intron |
GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | 8_3:-67113725 | Msa1303810:CDS |
GAGGATAGCCATGACATCTG+AGG | 0.634831 | 8_3:+67113183 | None:intergenic |
CCAATTCTAGCATTGTTACG+AGG | 0.641555 | 8_3:+67115108 | None:intergenic |
AACCATTATCCATTTCACCC+GGG | 0.641591 | 8_3:-67113282 | Msa1303810:CDS |
GTTACGAGGAAAATGAATTG+CGG | 0.642882 | 8_3:+67115122 | None:intergenic |
GGATAAGCCATCCATTGGCA+CGG | 0.647992 | 8_3:-67113704 | Msa1303810:intron |
GATGCAACAGAGATTGTGCA+AGG | 0.653011 | 8_3:+67113040 | None:intergenic |
CTGCTTCATCGATTTCTACG+AGG | 0.656045 | 8_3:-67115176 | Msa1303810:CDS |
TGGTATTCTTGAAACCGAAG+AGG | 0.662324 | 8_3:-67113984 | Msa1303810:CDS |
ATGCATTGAAAACCATGAGA+AGG | 0.671326 | 8_3:+67112986 | None:intergenic |
GACAGTTGGGAAGAACAAAG+TGG | 0.672565 | 8_3:-67114198 | Msa1303810:CDS |
GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | 8_3:-67113767 | Msa1303810:intron |
GATGCAGAAGAGAAAACTCA+GGG | 0.684794 | 8_3:-67114293 | Msa1303810:CDS |
ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | 8_3:-67113337 | Msa1303810:intron |
GCAGAAGAGAAAACTCAGGG+TGG | 0.728959 | 8_3:-67114290 | Msa1303810:CDS |
GCTCAATCAAAGCCTCAAGG+GGG | 0.730531 | 8_3:-67114248 | Msa1303810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAAAAATAATACCTT+GGG | + | chr8_3:67113263-67113282 | None:intergenic | 10.0% |
!! | AAAAAATAAAAATAATACCT+TGG | + | chr8_3:67113264-67113283 | None:intergenic | 10.0% |
!!! | AAGGTATTATTTTTATTTTT+TGG | - | chr8_3:67113263-67113282 | Msa1303810:CDS | 10.0% |
!!! | AGGTATTATTTTTATTTTTT+GGG | - | chr8_3:67113264-67113283 | Msa1303810:CDS | 10.0% |
!!! | TTTTCAAAAAATTAAAACAA+TGG | - | chr8_3:67114733-67114752 | Msa1303810:intron | 10.0% |
!! | AAAATAAAAATAATACCTTG+GGG | + | chr8_3:67113262-67113281 | None:intergenic | 15.0% |
!! | CGAAAAATATTCATAAATAT+TGG | + | chr8_3:67113741-67113760 | None:intergenic | 15.0% |
!! | GTTAAGACAAATAATTAAAT+GGG | + | chr8_3:67114427-67114446 | None:intergenic | 15.0% |
!! | AACTGCTAAAAAATTGAAAA+TGG | + | chr8_3:67113055-67113074 | None:intergenic | 20.0% |
!! | AAATAAAAATAATACCTTGG+GGG | + | chr8_3:67113261-67113280 | None:intergenic | 20.0% |
!!! | TATTTTTATTTTTTGGGTCA+TGG | - | chr8_3:67113270-67113289 | Msa1303810:CDS | 20.0% |
!!! | TACATTTTCTCTTATACTAA+GGG | + | chr8_3:67113532-67113551 | None:intergenic | 20.0% |
!! | TTTCAGACCAATAAAAAAAA+AGG | - | chr8_3:67113639-67113658 | Msa1303810:intron | 20.0% |
!! | TTCAGACCAATAAAAAAAAA+GGG | - | chr8_3:67113640-67113659 | Msa1303810:intron | 20.0% |
!! | GAAAAATATTCAAAAATGGT+GGG | + | chr8_3:67113715-67113734 | None:intergenic | 20.0% |
!! | TGAAAAATATTCAAAAATGG+TGG | + | chr8_3:67113716-67113735 | None:intergenic | 20.0% |
!! | GTCTGAAAAATATTCAAAAA+TGG | + | chr8_3:67113719-67113738 | None:intergenic | 20.0% |
!! | ACAAGATGAAATTACTAATA+AGG | + | chr8_3:67113924-67113943 | None:intergenic | 20.0% |
!! | GGTTAAGACAAATAATTAAA+TGG | + | chr8_3:67114428-67114447 | None:intergenic | 20.0% |
!! | AAGTATACTGTTTCAAAAAA+AGG | + | chr8_3:67114625-67114644 | None:intergenic | 20.0% |
!! | CAAAAAATTAAAACAATGGA+TGG | - | chr8_3:67114737-67114756 | Msa1303810:intron | 20.0% |
!!! | TTTTTTTACATATATCCAGA+TGG | - | chr8_3:67115355-67115374 | Msa1303810:five_prime_UTR | 20.0% |
!!! | AGATAGATTTGGGTTTTATT+GGG | + | chr8_3:67112870-67112889 | None:intergenic | 25.0% |
!!! | AAGATAGATTTGGGTTTTAT+TGG | + | chr8_3:67112871-67112890 | None:intergenic | 25.0% |
! | ATAAAACCCAAATCTATCTT+AGG | - | chr8_3:67112871-67112890 | Msa1303810:three_prime_UTR | 25.0% |
! | TAAAACCCAAATCTATCTTA+GGG | - | chr8_3:67112872-67112891 | Msa1303810:three_prime_UTR | 25.0% |
! | AAAAACCCTAAGATAGATTT+GGG | + | chr8_3:67112880-67112899 | None:intergenic | 25.0% |
! | TAAAAACCCTAAGATAGATT+TGG | + | chr8_3:67112881-67112900 | None:intergenic | 25.0% |
!!! | TGATTCTAAGATTAGGTTAA+AGG | + | chr8_3:67112973-67112992 | None:intergenic | 25.0% |
! | TTTCTACAAAATGTAAAGTG+CGG | + | chr8_3:67112999-67113018 | None:intergenic | 25.0% |
! | TTAAGAACAACACATTTCAA+TGG | - | chr8_3:67113073-67113092 | Msa1303810:three_prime_UTR | 25.0% |
!! | ACATTTTCTCTTATACTAAG+GGG | + | chr8_3:67113531-67113550 | None:intergenic | 25.0% |
!! | GTACATTTTCTCTTATACTA+AGG | + | chr8_3:67113533-67113552 | None:intergenic | 25.0% |
! | AACATTAGAAATAATCCCAT+GGG | + | chr8_3:67113865-67113884 | None:intergenic | 25.0% |
! | AAACATTAGAAATAATCCCA+TGG | + | chr8_3:67113866-67113885 | None:intergenic | 25.0% |
! | TGTAATGTATTTCTCTTTAC+AGG | - | chr8_3:67114189-67114208 | Msa1303810:CDS | 25.0% |
! | TTCAAAACATCTTATACTGA+AGG | - | chr8_3:67114267-67114286 | Msa1303810:CDS | 25.0% |
!! | CTTAACCATATTTTGCATTA+AGG | - | chr8_3:67114441-67114460 | Msa1303810:intron | 25.0% |
! | TAACACCTTAATGCAAAATA+TGG | + | chr8_3:67114449-67114468 | None:intergenic | 25.0% |
!! | TTTATTTATTGCTTTAGCTC+AGG | - | chr8_3:67114833-67114852 | Msa1303810:intron | 25.0% |
! | AAAATAGCCAAAATTAAGAG+AGG | + | chr8_3:67115126-67115145 | None:intergenic | 25.0% |
!! | TTGTAGAACCTAAATTTTTG+TGG | - | chr8_3:67115149-67115168 | Msa1303810:CDS | 25.0% |
!!! | CAATTTTTTATTTTGCAACG+AGG | - | chr8_3:67115188-67115207 | Msa1303810:CDS | 25.0% |
!! | GTGTTTTGTATTATTGTCAA+CGG | - | chr8_3:67115271-67115290 | Msa1303810:intron | 25.0% |
! | TAATTTACTAAACATCCATC+TGG | + | chr8_3:67115373-67115392 | None:intergenic | 25.0% |
GAAAATGGAATTAATCTACG+AGG | + | chr8_3:67113040-67113059 | None:intergenic | 30.0% | |
GAATTGGTATTCTTACACAA+AGG | - | chr8_3:67113195-67113214 | Msa1303810:CDS | 30.0% | |
! | TGGATTTTCTTCATTATCTG+CGG | - | chr8_3:67113290-67113309 | Msa1303810:CDS | 30.0% |
GTTGTGTTTATAAGCTATCT+TGG | - | chr8_3:67113383-67113402 | Msa1303810:intron | 30.0% | |
TTGAAAGAGCTTATAGCTTA+TGG | + | chr8_3:67113450-67113469 | None:intergenic | 30.0% | |
AATAAAAAAAAAGGGCAACC+CGG | - | chr8_3:67113648-67113667 | Msa1303810:intron | 30.0% | |
!! | TAGAGTACTGGTAAAAATCA+AGG | - | chr8_3:67113972-67113991 | Msa1303810:CDS | 30.0% |
CCAAAATAAAAGAAAGACCA+AGG | + | chr8_3:67114164-67114183 | None:intergenic | 30.0% | |
!! | CCTTGGTCTTTCTTTTATTT+TGG | - | chr8_3:67114161-67114180 | Msa1303810:intron | 30.0% |
! | TTTAAGATCTTTGACCTCTT+CGG | + | chr8_3:67114320-67114339 | None:intergenic | 30.0% |
! | CATTAAGGTGTTACGTTTAA+AGG | - | chr8_3:67114456-67114475 | Msa1303810:intron | 30.0% |
GCAATGTTATATCGTATGAA+GGG | - | chr8_3:67114674-67114693 | Msa1303810:intron | 30.0% | |
AGAATTGCAAGAATGTGATT+TGG | - | chr8_3:67114706-67114725 | Msa1303810:intron | 30.0% | |
GAATTGCAAGAATGTGATTT+GGG | - | chr8_3:67114707-67114726 | Msa1303810:intron | 30.0% | |
AATTAAAACAATGGATGGTC+TGG | - | chr8_3:67114742-67114761 | Msa1303810:intron | 30.0% | |
!!! | TTGTTTTGATCGAGTAGTTT+TGG | - | chr8_3:67114891-67114910 | Msa1303810:intron | 30.0% |
GAATGGTTATTTACATACCT+AGG | + | chr8_3:67114918-67114937 | None:intergenic | 30.0% | |
! | AATAACCATTCTACTCCTTT+TGG | - | chr8_3:67114927-67114946 | Msa1303810:intron | 30.0% |
! | TTTTGTACTCCAAATATGCA+GGG | - | chr8_3:67115035-67115054 | Msa1303810:intron | 30.0% |
!! | CTAAATTTTTGTGGTGTTGA+GGG | - | chr8_3:67115158-67115177 | Msa1303810:CDS | 30.0% |
TGTAAAAAAACTGTTCTCGT+TGG | + | chr8_3:67115345-67115364 | None:intergenic | 30.0% | |
GAATCATATGCATGTTTGAT+CGG | - | chr8_3:67115407-67115426 | Msa1303810:five_prime_UTR | 30.0% | |
!!! | ATTTGGGTTTTATTGGGTGA+CGG | + | chr8_3:67112864-67112883 | None:intergenic | 35.0% |
ACGAACGAAGCTTACAAAAT+GGG | + | chr8_3:67112920-67112939 | None:intergenic | 35.0% | |
!! | GCGGTATTGATTCTAAGATT+AGG | + | chr8_3:67112980-67112999 | None:intergenic | 35.0% |
GTTACGAGGAAAATGAATTG+CGG | + | chr8_3:67113168-67113187 | None:intergenic | 35.0% | |
ATCTCATAATGCACTTGAGT+GGG | + | chr8_3:67113476-67113495 | None:intergenic | 35.0% | |
TATCTCATAATGCACTTGAG+TGG | + | chr8_3:67113477-67113496 | None:intergenic | 35.0% | |
!!! | GGGTTGCCCTTTTTTTTTAT+TGG | + | chr8_3:67113649-67113668 | None:intergenic | 35.0% |
TAAAGGATTCCATAAGCTAG+TGG | + | chr8_3:67114139-67114158 | None:intergenic | 35.0% | |
TTATGGAATCCTTTAAGCCT+TGG | - | chr8_3:67114144-67114163 | Msa1303810:intron | 35.0% | |
AAAGAAAGACCAAGGCTTAA+AGG | + | chr8_3:67114156-67114175 | None:intergenic | 35.0% | |
ATGTATTTCTCTTTACAGGC+AGG | - | chr8_3:67114193-67114212 | Msa1303810:CDS | 35.0% | |
ATCAAGACTCTGTCATTCAA+GGG | + | chr8_3:67114343-67114362 | None:intergenic | 35.0% | |
TATCAAGACTCTGTCATTCA+AGG | + | chr8_3:67114344-67114363 | None:intergenic | 35.0% | |
GAATGACAGAGTCTTGATAA+AGG | - | chr8_3:67114345-67114364 | Msa1303810:intron | 35.0% | |
ACCTGCAGCATCATAATTAA+AGG | + | chr8_3:67114509-67114528 | None:intergenic | 35.0% | |
! | TAACACCACTCTTCTAAAAG+AGG | - | chr8_3:67114651-67114670 | Msa1303810:intron | 35.0% |
! | AACACCACTCTTCTAAAAGA+GGG | - | chr8_3:67114652-67114671 | Msa1303810:intron | 35.0% |
GGCAATGTTATATCGTATGA+AGG | - | chr8_3:67114673-67114692 | Msa1303810:intron | 35.0% | |
TGTTATATCGTATGAAGGGA+AGG | - | chr8_3:67114678-67114697 | Msa1303810:intron | 35.0% | |
ACTAGCATTATCCCTTAAGA+CGG | - | chr8_3:67114774-67114793 | Msa1303810:intron | 35.0% | |
AACACATTCTACCGTCTTAA+GGG | + | chr8_3:67114788-67114807 | None:intergenic | 35.0% | |
TACATCCAAAAGGAGTAGAA+TGG | + | chr8_3:67114935-67114954 | None:intergenic | 35.0% | |
TATCACCTGTTACATCCAAA+AGG | + | chr8_3:67114945-67114964 | None:intergenic | 35.0% | |
AAACCATTATCCATTTCACC+CGG | - | chr8_3:67115004-67115023 | Msa1303810:intron | 35.0% | |
! | GTTTTGTACTCCAAATATGC+AGG | - | chr8_3:67115034-67115053 | Msa1303810:intron | 35.0% |
AATGACTTCAAAGGCAAAGA+TGG | - | chr8_3:67115058-67115077 | Msa1303810:CDS | 35.0% | |
! | TGGCTATCCTCTCTTAATTT+TGG | - | chr8_3:67115116-67115135 | Msa1303810:CDS | 35.0% |
CCTCAACACCACAAAAATTT+AGG | + | chr8_3:67115160-67115179 | None:intergenic | 35.0% | |
!! | CCTAAATTTTTGTGGTGTTG+AGG | - | chr8_3:67115157-67115176 | Msa1303810:CDS | 35.0% |
ATGCATTGAAAACCATGAGA+AGG | + | chr8_3:67115304-67115323 | None:intergenic | 35.0% | |
AAAATGGGAAGAAACGTGAC+AGG | + | chr8_3:67112905-67112924 | None:intergenic | 40.0% | |
CACGAACGAAGCTTACAAAA+TGG | + | chr8_3:67112921-67112940 | None:intergenic | 40.0% | |
! | CATTTTGTAAGCTTCGTTCG+TGG | - | chr8_3:67112919-67112938 | Msa1303810:three_prime_UTR | 40.0% |
AGGAACCTTTCTTCCTTTGA+AGG | - | chr8_3:67113131-67113150 | Msa1303810:three_prime_UTR | 40.0% | |
GCAATCCTTCAAAGGAAGAA+AGG | + | chr8_3:67113139-67113158 | None:intergenic | 40.0% | |
CCAATTCTAGCATTGTTACG+AGG | + | chr8_3:67113182-67113201 | None:intergenic | 40.0% | |
CCTCGTAACAATGCTAGAAT+TGG | - | chr8_3:67113179-67113198 | Msa1303810:CDS | 40.0% | |
! | CGGCTTTAACAACAATAGAC+GGG | + | chr8_3:67113226-67113245 | None:intergenic | 40.0% |
! | GCGGCTTTAACAACAATAGA+CGG | + | chr8_3:67113227-67113246 | None:intergenic | 40.0% |
AGAAATAATCCCATGGGACA+GGG | + | chr8_3:67113859-67113878 | None:intergenic | 40.0% | |
TAGAAATAATCCCATGGGAC+AGG | + | chr8_3:67113860-67113879 | None:intergenic | 40.0% | |
GATGCAGAAGAGAAAACTCA+GGG | - | chr8_3:67113994-67114013 | Msa1303810:CDS | 40.0% | |
CAAAGTGGACATTAGTGTGA+AGG | - | chr8_3:67114104-67114123 | Msa1303810:intron | 40.0% | |
GTTGTGTACTCAAAGTATGC+AGG | - | chr8_3:67114223-67114242 | Msa1303810:CDS | 40.0% | |
AAAGTATGCAGGAACTGAAG+TGG | - | chr8_3:67114234-67114253 | Msa1303810:CDS | 40.0% | |
TGGTATTCTTGAAACCGAAG+AGG | - | chr8_3:67114303-67114322 | Msa1303810:CDS | 40.0% | |
ACAGAGTCTTGATAAAGGTG+TGG | - | chr8_3:67114350-67114369 | Msa1303810:intron | 40.0% | |
GCCTTTAATTATGATGCTGC+AGG | - | chr8_3:67114505-67114524 | Msa1303810:intron | 40.0% | |
!! | ATTGCCCTCTTTTAGAAGAG+TGG | + | chr8_3:67114659-67114678 | None:intergenic | 40.0% |
CAACACATTCTACCGTCTTA+AGG | + | chr8_3:67114789-67114808 | None:intergenic | 40.0% | |
! | ATTGCTTTAGCTCAGGTCAT+TGG | - | chr8_3:67114840-67114859 | Msa1303810:intron | 40.0% |
! | TTTAGCTCAGGTCATTGGTT+TGG | - | chr8_3:67114845-67114864 | Msa1303810:intron | 40.0% |
! | CTACTCCTTTTGGATGTAAC+AGG | - | chr8_3:67114937-67114956 | Msa1303810:intron | 40.0% |
ATGTAACAGGTGATAGCTGT+TGG | - | chr8_3:67114950-67114969 | Msa1303810:intron | 40.0% | |
AACCATTATCCATTTCACCC+GGG | - | chr8_3:67115005-67115024 | Msa1303810:intron | 40.0% | |
GAGTACAAAACTGTATTCCC+GGG | + | chr8_3:67115025-67115044 | None:intergenic | 40.0% | |
GGAGTACAAAACTGTATTCC+CGG | + | chr8_3:67115026-67115045 | None:intergenic | 40.0% | |
GAAGTCATTCCCTGCATATT+TGG | + | chr8_3:67115047-67115066 | None:intergenic | 40.0% | |
TATGCAGGGAATGACTTCAA+AGG | - | chr8_3:67115049-67115068 | Msa1303810:CDS | 40.0% | |
CGTGGCACACTTTGTTGATA+AGG | - | chr8_3:67112937-67112956 | Msa1303810:three_prime_UTR | 45.0% | |
!! | CTGCTTCATCGATTTCTACG+AGG | - | chr8_3:67113111-67113130 | Msa1303810:three_prime_UTR | 45.0% |
GGAAGTTCGCAATCCTTCAA+AGG | + | chr8_3:67113147-67113166 | None:intergenic | 45.0% | |
CTACAGCGAGAGATCAAAGT+AGG | - | chr8_3:67113581-67113600 | Msa1303810:intron | 45.0% | |
TATACATAAGCCCTGTCCCA+TGG | - | chr8_3:67113846-67113865 | Msa1303810:intron | 45.0% | |
ATACATAAGCCCTGTCCCAT+GGG | - | chr8_3:67113847-67113866 | Msa1303810:intron | 45.0% | |
CATACAACTGTCAAGCCACT+AGG | - | chr8_3:67113946-67113965 | Msa1303810:CDS | 45.0% | |
ACCAGTACTCTATCACCTAG+TGG | + | chr8_3:67113964-67113983 | None:intergenic | 45.0% | |
GGATGCAGAAGAGAAAACTC+AGG | - | chr8_3:67113993-67114012 | Msa1303810:CDS | 45.0% | |
! | GGCTTTGATTGAGCAGTTGA+TGG | + | chr8_3:67114033-67114052 | None:intergenic | 45.0% |
ACTGCTCAATCAAAGCCTCA+AGG | - | chr8_3:67114036-67114055 | Msa1303810:CDS | 45.0% | |
CTGCTCAATCAAAGCCTCAA+GGG | - | chr8_3:67114037-67114056 | Msa1303810:CDS | 45.0% | |
TGCTCAATCAAAGCCTCAAG+GGG | - | chr8_3:67114038-67114057 | Msa1303810:CDS | 45.0% | |
TTGGAGACGGAAAGACAGTT+GGG | - | chr8_3:67114076-67114095 | Msa1303810:CDS | 45.0% | |
GACAGTTGGGAAGAACAAAG+TGG | - | chr8_3:67114089-67114108 | Msa1303810:intron | 45.0% | |
AGTGGACATTAGTGTGAAGG+TGG | - | chr8_3:67114107-67114126 | Msa1303810:intron | 45.0% | |
GTGGACATTAGTGTGAAGGT+GGG | - | chr8_3:67114108-67114127 | Msa1303810:intron | 45.0% | |
GGAACTGAAGTGGAGTTCAA+TGG | - | chr8_3:67114244-67114263 | Msa1303810:CDS | 45.0% | |
CTGAAGGATGATGACATCGT+TGG | - | chr8_3:67114283-67114302 | Msa1303810:CDS | 45.0% | |
GAAGCTGAGGAAAAAACTGC+TGG | - | chr8_3:67114533-67114552 | Msa1303810:intron | 45.0% | |
ACCAAGGATAAGCCATCCAT+TGG | - | chr8_3:67114578-67114597 | Msa1303810:intron | 45.0% | |
AGAAAAGCTTACCGTGCCAA+TGG | + | chr8_3:67114597-67114616 | None:intergenic | 45.0% | |
!!! | GATCGAGTAGTTTTGGTCCT+AGG | - | chr8_3:67114898-67114917 | Msa1303810:intron | 45.0% |
TTCCCGGGTGAAATGGATAA+TGG | + | chr8_3:67115010-67115029 | None:intergenic | 45.0% | |
AACTGTATTCCCGGGTGAAA+TGG | + | chr8_3:67115017-67115036 | None:intergenic | 45.0% | |
TTTGAGAGCCTCAGATGTCA+TGG | - | chr8_3:67115096-67115115 | Msa1303810:CDS | 45.0% | |
GATGCAACAGAGATTGTGCA+AGG | + | chr8_3:67115250-67115269 | None:intergenic | 45.0% | |
! | AACGGCTTTTCACCTTCTCA+TGG | - | chr8_3:67115289-67115308 | Msa1303810:intron | 45.0% |
TACCTTGGGGGTAACAACAG+TGG | + | chr8_3:67113249-67113268 | None:intergenic | 50.0% | |
GCCACTAGGTGATAGAGTAC+TGG | - | chr8_3:67113960-67113979 | Msa1303810:CDS | 50.0% | |
GCAGAAGAGAAAACTCAGGG+TGG | - | chr8_3:67113997-67114016 | Msa1303810:CDS | 50.0% | |
GCTCAATCAAAGCCTCAAGG+GGG | - | chr8_3:67114039-67114058 | Msa1303810:CDS | 50.0% | |
! | GAGGTAGTTGCTGTTGGAGA+CGG | - | chr8_3:67114063-67114082 | Msa1303810:CDS | 50.0% |
GTTGGAGACGGAAAGACAGT+TGG | - | chr8_3:67114075-67114094 | Msa1303810:CDS | 50.0% | |
! | TGGGTGATGCCACTAGCTTA+TGG | - | chr8_3:67114127-67114146 | Msa1303810:intron | 50.0% |
GGGCAGATCATCAAGACAAC+TGG | + | chr8_3:67114407-67114426 | None:intergenic | 50.0% | |
GCTGAGGAAAAAACTGCTGG+TGG | - | chr8_3:67114536-67114555 | Msa1303810:intron | 50.0% | |
!! | TGCTGGTGGTTTGTTGCTCA+CGG | - | chr8_3:67114550-67114569 | Msa1303810:intron | 50.0% |
GCCAATGGATGGCTTATCCT+TGG | + | chr8_3:67114582-67114601 | None:intergenic | 50.0% | |
GGATAAGCCATCCATTGGCA+CGG | - | chr8_3:67114583-67114602 | Msa1303810:intron | 50.0% | |
AAGCTTACCGTGCCAATGGA+TGG | + | chr8_3:67114593-67114612 | None:intergenic | 50.0% | |
AGGTGATAGCTGTTGGTCCA+GGG | - | chr8_3:67114957-67114976 | Msa1303810:intron | 50.0% | |
GAGGATAGCCATGACATCTG+AGG | + | chr8_3:67115107-67115126 | None:intergenic | 50.0% | |
CTTGGGGGTAACAACAGTGG+CGG | + | chr8_3:67113246-67113265 | None:intergenic | 55.0% | |
! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr8_3:67113670-67113689 | None:intergenic | 55.0% |
CACTAAAGCTCCCGCATACG+CGG | - | chr8_3:67113673-67113692 | Msa1303810:intron | 55.0% | |
ACTAAAGCTCCCGCATACGC+GGG | - | chr8_3:67113674-67113693 | Msa1303810:intron | 55.0% | |
ATCAAAGCCTCAAGGGGGTG+AGG | - | chr8_3:67114044-67114063 | Msa1303810:CDS | 55.0% | |
GTTGCTCACGGAAGCAACCA+AGG | - | chr8_3:67114562-67114581 | Msa1303810:intron | 55.0% | |
CAGGTGATAGCTGTTGGTCC+AGG | - | chr8_3:67114956-67114975 | Msa1303810:intron | 55.0% | |
CTGTTGCCTTCGTCATCCAC+AGG | + | chr8_3:67114983-67115002 | None:intergenic | 55.0% | |
CGCCACTGTTGTTACCCCCA+AGG | - | chr8_3:67113244-67113263 | Msa1303810:CDS | 60.0% | |
! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr8_3:67113669-67113688 | None:intergenic | 60.0% |
CTAAAGCTCCCGCATACGCG+GGG | - | chr8_3:67113675-67113694 | Msa1303810:intron | 60.0% | |
! | AAATGGTGGGACCCCCTTCC+CGG | + | chr8_3:67113702-67113721 | None:intergenic | 60.0% |
GCAACTACCTCACCCCCTTG+AGG | + | chr8_3:67114054-67114073 | None:intergenic | 60.0% | |
GGGGGTGAGGTAGTTGCTGT+TGG | - | chr8_3:67114057-67114076 | Msa1303810:CDS | 60.0% | |
GCTGCAGGTTGCAGAAGCTG+AGG | - | chr8_3:67114520-67114539 | Msa1303810:intron | 60.0% | |
AGCTGTTGGTCCAGGGCCTG+TGG | - | chr8_3:67114964-67114983 | Msa1303810:intron | 65.0% | |
CCTTCGTCATCCACAGGCCC+TGG | + | chr8_3:67114977-67114996 | None:intergenic | 65.0% | |
CCAGGGCCTGTGGATGACGA+AGG | - | chr8_3:67114974-67114993 | Msa1303810:intron | 65.0% | |
TTCCCGGACCCCGCGTATGC+GGG | + | chr8_3:67113686-67113705 | None:intergenic | 70.0% | |
CTTCCCGGACCCCGCGTATG+CGG | + | chr8_3:67113687-67113706 | None:intergenic | 70.0% | |
GCATACGCGGGGTCCGGGAA+GGG | - | chr8_3:67113686-67113705 | Msa1303810:intron | 70.0% | |
CATACGCGGGGTCCGGGAAG+GGG | - | chr8_3:67113687-67113706 | Msa1303810:intron | 70.0% | |
ATACGCGGGGTCCGGGAAGG+GGG | - | chr8_3:67113688-67113707 | Msa1303810:intron | 70.0% | |
GCTCCCGCATACGCGGGGTC+CGG | - | chr8_3:67113680-67113699 | Msa1303810:intron | 75.0% | |
CTCCCGCATACGCGGGGTCC+GGG | - | chr8_3:67113681-67113700 | Msa1303810:intron | 75.0% | |
CGCATACGCGGGGTCCGGGA+AGG | - | chr8_3:67113685-67113704 | Msa1303810:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 67112856 | 67115453 | 67112856 | ID=Msa1303810;Name=Msa1303810 |
chr8_3 | mRNA | 67112856 | 67115453 | 67112856 | ID=Msa1303810-mRNA-1;Parent=Msa1303810;Name=Msa1303810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|0.8|0.66|6|321|253 |
chr8_3 | exon | 67112856 | 67113350 | 67112856 | ID=Msa1303810-mRNA-1:exon:20506;Parent=Msa1303810-mRNA-1 |
chr8_3 | exon | 67113705 | 67113782 | 67113705 | ID=Msa1303810-mRNA-1:exon:20505;Parent=Msa1303810-mRNA-1 |
chr8_3 | exon | 67113943 | 67114098 | 67113943 | ID=Msa1303810-mRNA-1:exon:20504;Parent=Msa1303810-mRNA-1 |
chr8_3 | exon | 67114184 | 67114363 | 67114184 | ID=Msa1303810-mRNA-1:exon:20503;Parent=Msa1303810-mRNA-1 |
chr8_3 | exon | 67115044 | 67115239 | 67115044 | ID=Msa1303810-mRNA-1:exon:20502;Parent=Msa1303810-mRNA-1 |
chr8_3 | exon | 67115351 | 67115453 | 67115351 | ID=Msa1303810-mRNA-1:exon:20501;Parent=Msa1303810-mRNA-1 |
chr8_3 | five_prime_UTR | 67115351 | 67115453 | 67115351 | ID=Msa1303810-mRNA-1:five_prime_utr;Parent=Msa1303810-mRNA-1 |
chr8_3 | five_prime_UTR | 67115218 | 67115239 | 67115218 | ID=Msa1303810-mRNA-1:five_prime_utr;Parent=Msa1303810-mRNA-1 |
chr8_3 | CDS | 67115044 | 67115217 | 67115044 | ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1 |
chr8_3 | CDS | 67114184 | 67114363 | 67114184 | ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1 |
chr8_3 | CDS | 67113943 | 67114098 | 67113943 | ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1 |
chr8_3 | CDS | 67113705 | 67113782 | 67113705 | ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1 |
chr8_3 | CDS | 67113177 | 67113350 | 67113177 | ID=Msa1303810-mRNA-1:cds;Parent=Msa1303810-mRNA-1 |
chr8_3 | three_prime_UTR | 67112856 | 67113176 | 67112856 | ID=Msa1303810-mRNA-1:three_prime_utr;Parent=Msa1303810-mRNA-1 |
Gene Sequence |
Protein sequence |