Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363080 | XP_003609971.1 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.17e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363080 | sp|O65282|CH20_ARATH | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.22e-134 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363080 | G7JS70 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 5.61e-171 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043680 | Msa1363080 | 0.819993 | 8.672246e-53 | -8.615850e-47 |
| Msa0077910 | Msa1363080 | 0.825345 | 4.931716e-54 | -8.615850e-47 |
| Msa0092180 | Msa1363080 | 0.859752 | 3.327947e-63 | -8.615850e-47 |
| Msa0092660 | Msa1363080 | 0.831394 | 1.711419e-55 | -8.615850e-47 |
| Msa0092680 | Msa1363080 | 0.820933 | 5.278812e-53 | -8.615850e-47 |
| Msa0092730 | Msa1363080 | 0.821220 | 4.533061e-53 | -8.615850e-47 |
| Msa1363080 | Msa1365870 | 0.826206 | 3.080272e-54 | -8.615850e-47 |
| Msa1363080 | Msa1398840 | 0.840599 | 7.893549e-58 | -8.615850e-47 |
| Msa1363080 | Msa1405770 | 0.800098 | 1.690250e-48 | -8.615850e-47 |
| Msa1363080 | Msa1407710 | 0.813837 | 2.091111e-51 | -8.615850e-47 |
| Msa1363080 | Msa1416460 | 0.807109 | 5.934403e-50 | -8.615850e-47 |
| Msa1363080 | Msa1438360 | 0.847175 | 1.365302e-59 | -8.615850e-47 |
| Msa0639370 | Msa1363080 | 0.805546 | 1.266958e-49 | -8.615850e-47 |
| Msa0661470 | Msa1363080 | 0.848889 | 4.595911e-60 | -8.615850e-47 |
| Msa0667970 | Msa1363080 | 0.800644 | 1.308543e-48 | -8.615850e-47 |
| Msa0682460 | Msa1363080 | 0.863123 | 3.114977e-64 | -8.615850e-47 |
| Msa0703760 | Msa1363080 | 0.833367 | 5.556314e-56 | -8.615850e-47 |
| Msa0761790 | Msa1363080 | 0.820428 | 6.894829e-53 | -8.615850e-47 |
| Msa0790180 | Msa1363080 | 0.807236 | 5.577252e-50 | -8.615850e-47 |
| Msa0804110 | Msa1363080 | 0.805443 | 1.331847e-49 | -8.615850e-47 |
| Msa0842220 | Msa1363080 | 0.806100 | 9.689467e-50 | -8.615850e-47 |
| Msa0125800 | Msa1363080 | 0.827704 | 1.350728e-54 | -8.615850e-47 |
| Msa0131440 | Msa1363080 | 0.823556 | 1.299556e-53 | -8.615850e-47 |
| Msa0137600 | Msa1363080 | 0.809520 | 1.817245e-50 | -8.615850e-47 |
| Msa0141830 | Msa1363080 | 0.811458 | 6.931116e-51 | -8.615850e-47 |
| Msa0170440 | Msa1363080 | 0.825434 | 4.697128e-54 | -8.615850e-47 |
| Msa0177280 | Msa1363080 | 0.853303 | 2.611630e-61 | -8.615850e-47 |
| Msa0203520 | Msa1363080 | 0.848321 | 6.602921e-60 | -8.615850e-47 |
| Msa1258940 | Msa1363080 | 0.815714 | 8.025768e-52 | -8.615850e-47 |
| Msa1271600 | Msa1363080 | 0.806822 | 6.825243e-50 | -8.615850e-47 |
| Msa1272200 | Msa1363080 | 0.803132 | 4.033973e-49 | -8.615850e-47 |
| Msa1276840 | Msa1363080 | 0.806463 | 8.126458e-50 | -8.615850e-47 |
| Msa1303750 | Msa1363080 | 0.988317 | 1.508316e-173 | -8.615850e-47 |
| Msa1303810 | Msa1363080 | 0.972276 | 1.677150e-134 | -8.615850e-47 |
| Msa0367370 | Msa1363080 | 0.813719 | 2.220224e-51 | -8.615850e-47 |
| Msa0371720 | Msa1363080 | 0.849762 | 2.626045e-60 | -8.615850e-47 |
| Msa0386270 | Msa1363080 | 0.842315 | 2.787878e-58 | -8.615850e-47 |
| Msa0420110 | Msa1363080 | 0.814623 | 1.402008e-51 | -8.615850e-47 |
| Msa0429270 | Msa1363080 | 0.802884 | 4.538764e-49 | -8.615850e-47 |
| Msa0436090 | Msa1363080 | 0.846602 | 1.959360e-59 | -8.615850e-47 |
| Msa1032970 | Msa1363080 | 0.807859 | 4.113336e-50 | -8.615850e-47 |
| Msa1084150 | Msa1363080 | 0.811830 | 5.753790e-51 | -8.615850e-47 |
| Msa1106580 | Msa1363080 | 0.804839 | 1.781815e-49 | -8.615850e-47 |
| Msa0280140 | Msa1363080 | 0.810770 | 9.769408e-51 | -8.615850e-47 |
| Msa0323990 | Msa1363080 | 0.814881 | 1.228984e-51 | -8.615850e-47 |
| Msa0327550 | Msa1363080 | 0.800087 | 1.698538e-48 | -8.615850e-47 |
| Msa1126310 | Msa1363080 | 0.829651 | 4.570199e-55 | -8.615850e-47 |
| Msa1127510 | Msa1363080 | 0.821145 | 4.718227e-53 | -8.615850e-47 |
| Msa1167160 | Msa1363080 | 0.816184 | 6.304235e-52 | -8.615850e-47 |
| Msa1209150 | Msa1363080 | 0.894000 | 3.718295e-75 | -8.615850e-47 |
| Msa1219250 | Msa1363080 | 0.816272 | 6.023565e-52 | -8.615850e-47 |
| Msa0482960 | Msa1363080 | 0.833175 | 6.202224e-56 | -8.615850e-47 |
| Msa0506760 | Msa1363080 | 0.846917 | 1.607064e-59 | -8.615850e-47 |
| Msa0511940 | Msa1363080 | 0.847699 | 9.803155e-60 | -8.615850e-47 |
| Msa0532840 | Msa1363080 | 0.832117 | 1.134912e-55 | -8.615850e-47 |
| Msa0533010 | Msa1363080 | 0.820777 | 5.733644e-53 | -8.615850e-47 |
| Msa0555940 | Msa1363080 | 0.804920 | 1.713304e-49 | -8.615850e-47 |
| Msa0567290 | Msa1363080 | 0.833281 | 5.836220e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363080 | MtrunA17_Chr4g0070201 | 95.257 | 253 | 12 | 0 | 1 | 253 | 1 | 253 | 1.08e-174 | 481 |
| Msa1363080 | MtrunA17_Chr2g0301241 | 76.378 | 254 | 59 | 1 | 1 | 253 | 1 | 254 | 5.23e-142 | 398 |
| Msa1363080 | MtrunA17_Chr3g0139681 | 37.895 | 95 | 57 | 2 | 158 | 252 | 3 | 95 | 8.36e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363080 | AT5G20720.1 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
| Msa1363080 | AT5G20720.2 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
| Msa1363080 | AT5G20720.4 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
| Msa1363080 | AT5G20720.3 | 75.294 | 255 | 59 | 2 | 1 | 253 | 1 | 253 | 1.25e-135 | 382 |
Find 75 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTATCCTCTCTTAATTT+TGG | 0.185301 | tig0018025:+118193 | Msa1363080:exon |
| ATAAAACCCAAATCTATCTT+AGG | 0.191322 | tig0018025:+115902 | Msa1363080:five_prime_UTR |
| GAAGTCATTCCCTGCATATT+TGG | 0.259970 | tig0018025:-118121 | None:intergenic |
| AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | tig0018025:-118091 | None:intergenic |
| CCTCGTAACAATGCTAGAAT+TGG | 0.335567 | tig0018025:+116210 | Msa1363080:CDS |
| CACGAACGAAGCTTACAAAA+TGG | 0.352042 | tig0018025:-115949 | None:intergenic |
| TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | tig0018025:-118084 | None:intergenic |
| CGTGGCACACTTTGTTGATA+AGG | 0.388179 | tig0018025:+115968 | Msa1363080:five_prime_UTR |
| TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | tig0018025:-117348 | None:intergenic |
| AGGAACCTTTCTTCCTTTGA+AGG | 0.413360 | tig0018025:+116162 | Msa1363080:CDS |
| GGAGTACAAAACTGTATTCC+CGG | 0.420138 | tig0018025:-118100 | None:intergenic |
| TATCAAGACTCTGTCATTCA+AGG | 0.421253 | tig0018025:-117372 | None:intergenic |
| TAAAACCCAAATCTATCTTA+GGG | 0.442509 | tig0018025:+115903 | Msa1363080:five_prime_UTR |
| CCTTCGTCATCCACAGGCCC+TGG | 0.444066 | tig0018025:-118051 | None:intergenic |
| GGCTTTGATTGAGCAGTTGA+TGG | 0.449739 | tig0018025:-117061 | None:intergenic |
| CTGTTGCCTTCGTCATCCAC+AGG | 0.452383 | tig0018025:-118057 | None:intergenic |
| CAGGTGATAGCTGTTGGTCC+AGG | 0.460455 | tig0018025:+118033 | Msa1363080:intron |
| GAATGACAGAGTCTTGATAA+AGG | 0.473936 | tig0018025:+117376 | Msa1363080:CDS |
| TAATTTACTAAACATCCATC+TGG | 0.481409 | tig0018025:-118447 | None:intergenic |
| TTGGAGACGGGAAGACAGTT+GGG | 0.483437 | tig0018025:+117107 | Msa1363080:CDS |
| TTAAGAACAACACATTTCAA+TGG | 0.489464 | tig0018025:+116104 | Msa1363080:exon |
| GCAATCCTTCAAAGGAAGAA+AGG | 0.496887 | tig0018025:-116167 | None:intergenic |
| ACGAACGAAGCTTACAAAAT+GGG | 0.497890 | tig0018025:-115948 | None:intergenic |
| GCCAATGGATGGCTTATCCT+TGG | 0.505865 | tig0018025:-117610 | None:intergenic |
| AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | tig0018025:+118135 | Msa1363080:CDS |
| GAGGTAGTTGCTGTTGGAGA+CGG | 0.521962 | tig0018025:+117094 | Msa1363080:CDS |
| GTTGGAGACGGGAAGACAGT+TGG | 0.523055 | tig0018025:+117106 | Msa1363080:CDS |
| TGCTGGTGGTTTGTTGCTCA+CGG | 0.524264 | tig0018025:+117581 | Msa1363080:CDS |
| ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | tig0018025:-117371 | None:intergenic |
| CTGCTCAATCAAAGCCTCAA+GGG | 0.533192 | tig0018025:+117068 | Msa1363080:CDS |
| GAATCATATGCATGTTTGAT+CGG | 0.537354 | tig0018025:+118484 | Msa1363080:three_prime_UTR |
| AGGTAGTTGCTGTTGGAGAC+GGG | 0.539082 | tig0018025:+117095 | Msa1363080:CDS |
| AAGCTTACCGTGCCAATGGA+TGG | 0.542126 | tig0018025:-117621 | None:intergenic |
| AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | tig0018025:-117625 | None:intergenic |
| GGAACTGAAGTGGAGTTCAA+TGG | 0.549387 | tig0018025:+117275 | Msa1363080:CDS |
| AGCTGTTGGTCCAGGGCCTG+TGG | 0.552111 | tig0018025:+118041 | Msa1363080:CDS |
| GGAAGTTCGCAATCCTTCAA+AGG | 0.561777 | tig0018025:-116175 | None:intergenic |
| GCGGCTTTAACAACAATAGA+CGG | 0.565089 | tig0018025:-116255 | None:intergenic |
| TTCAAAACATCTTATACTGA+AGG | 0.568271 | tig0018025:+117298 | Msa1363080:CDS |
| CATACAACTGTCAAGCCACT+AGG | 0.568378 | tig0018025:+116977 | Msa1363080:CDS |
| ACCAAGGATAAGCCATCCAT+TGG | 0.568643 | tig0018025:+117609 | Msa1363080:CDS |
| TATGCAGGGAATGACTTCAA+AGG | 0.569312 | tig0018025:+118126 | Msa1363080:CDS |
| TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | tig0018025:+118173 | Msa1363080:CDS |
| GAGTACAAAACTGTATTCCC+GGG | 0.572521 | tig0018025:-118099 | None:intergenic |
| CTGAAGGATGATGACATCGT+TGG | 0.572824 | tig0018025:+117314 | Msa1363080:CDS |
| TGCTCAATCAAAGCCTCAAG+GGG | 0.578517 | tig0018025:+117069 | Msa1363080:CDS |
| AGGTGATAGCTGTTGGTCCA+GGG | 0.579593 | tig0018025:+118034 | Msa1363080:intron |
| AAAGTATGCAGGAACTGAAG+TGG | 0.581171 | tig0018025:+117265 | Msa1363080:CDS |
| ACTGCTCAATCAAAGCCTCA+AGG | 0.582194 | tig0018025:+117067 | Msa1363080:CDS |
| GTTGTGTACTCAAAGTATGC+AGG | 0.590902 | tig0018025:+117254 | Msa1363080:CDS |
| AAACCATTATCCATTTCACC+CGG | 0.592297 | tig0018025:+118081 | Msa1363080:CDS |
| CGGCTTTAACAACAATAGAC+GGG | 0.595648 | tig0018025:-116254 | None:intergenic |
| GGATGCAGAAGAGAAAACTC+AGG | 0.597980 | tig0018025:+117024 | Msa1363080:CDS |
| ACCAGTACTCTATCACCTAG+TGG | 0.604909 | tig0018025:-116992 | None:intergenic |
| CAAAGTGGACATTAGTGTGA+AGG | 0.607471 | tig0018025:+117135 | Msa1363080:CDS |
| GAATTGGTATTCTTACACAA+AGG | 0.614844 | tig0018025:+116226 | Msa1363080:CDS |
| CCAGGGCCTGTGGATGACGA+AGG | 0.620963 | tig0018025:+118051 | Msa1363080:CDS |
| AAAATAGCCAAAATTAAGAG+AGG | 0.622578 | tig0018025:-118200 | None:intergenic |
| GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | tig0018025:+117593 | Msa1363080:CDS |
| GAGGATAGCCATGACATCTG+AGG | 0.634831 | tig0018025:-118181 | None:intergenic |
| AAAATGGGAAGAAACGTGAA+AGG | 0.640266 | tig0018025:-115933 | None:intergenic |
| CCAATTCTAGCATTGTTACG+AGG | 0.641555 | tig0018025:-116210 | None:intergenic |
| AACCATTATCCATTTCACCC+GGG | 0.641591 | tig0018025:+118082 | Msa1363080:CDS |
| GTTACGAGGAAAATGAATTG+CGG | 0.642882 | tig0018025:-116196 | None:intergenic |
| GGATAAGCCATCCATTGGCA+CGG | 0.647992 | tig0018025:+117614 | Msa1363080:CDS |
| GATGCAACAGAGATTGTGCA+AGG | 0.653011 | tig0018025:-118324 | None:intergenic |
| CTGCTTCATCGATTTCTACG+AGG | 0.656045 | tig0018025:+116142 | Msa1363080:CDS |
| TGGTATTCTTGAAACCGAAG+AGG | 0.662324 | tig0018025:+117334 | Msa1363080:CDS |
| ATGCATTGAAAACCATGAGA+AGG | 0.671326 | tig0018025:-118378 | None:intergenic |
| GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | tig0018025:+117551 | Msa1363080:intron |
| GATGCAGAAGAGAAAACTCA+GGG | 0.684794 | tig0018025:+117025 | Msa1363080:CDS |
| ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | tig0018025:+118027 | Msa1363080:intron |
| GACAGTTGGGAAGAACAAAG+TGG | 0.692016 | tig0018025:+117120 | Msa1363080:CDS |
| GCAGAAGAGAAAACTCAGGG+TGG | 0.728959 | tig0018025:+117028 | Msa1363080:CDS |
| GCTCAATCAAAGCCTCAAGG+GGG | 0.730531 | tig0018025:+117070 | Msa1363080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAATAATACCTT+GGG | - | tig0018025:116294-116313 | None:intergenic | 10.0% |
| !! | AAAAAATAAAAATAATACCT+TGG | - | tig0018025:116295-116314 | None:intergenic | 10.0% |
| !!! | AAGGTATTATTTTTATTTTT+TGG | + | tig0018025:116294-116313 | Msa1363080:intron | 10.0% |
| !!! | AGGTATTATTTTTATTTTTT+GGG | + | tig0018025:116295-116314 | Msa1363080:intron | 10.0% |
| !!! | TTTTCAAAAAATTAAAACAA+TGG | + | tig0018025:117764-117783 | Msa1363080:intron | 10.0% |
| !! | AAAATAAAAATAATACCTTG+GGG | - | tig0018025:116293-116312 | None:intergenic | 15.0% |
| !! | CGAAAAATATTCATAAATAT+TGG | - | tig0018025:116772-116791 | None:intergenic | 15.0% |
| !! | GTTAAGACAAATAATTAAAT+GGG | - | tig0018025:117458-117477 | None:intergenic | 15.0% |
| !! | AACTGCTAAAAAATTGAAAA+TGG | - | tig0018025:116086-116105 | None:intergenic | 20.0% |
| !! | AAATAAAAATAATACCTTGG+GGG | - | tig0018025:116292-116311 | None:intergenic | 20.0% |
| !!! | TATTTTTATTTTTTGGGTCA+TGG | + | tig0018025:116301-116320 | Msa1363080:intron | 20.0% |
| !!! | TACATTTTCTCTTATACTAA+GGG | - | tig0018025:116563-116582 | None:intergenic | 20.0% |
| !! | TTTCAGACCAATAAAAAAAA+AGG | + | tig0018025:116670-116689 | Msa1363080:intron | 20.0% |
| !! | TTCAGACCAATAAAAAAAAA+GGG | + | tig0018025:116671-116690 | Msa1363080:intron | 20.0% |
| !! | GAAAAATATTCAAAAATGGT+GGG | - | tig0018025:116746-116765 | None:intergenic | 20.0% |
| !! | TGAAAAATATTCAAAAATGG+TGG | - | tig0018025:116747-116766 | None:intergenic | 20.0% |
| !! | GTCTGAAAAATATTCAAAAA+TGG | - | tig0018025:116750-116769 | None:intergenic | 20.0% |
| !! | ACAAGATGAAATTACTAATA+AGG | - | tig0018025:116955-116974 | None:intergenic | 20.0% |
| !! | GGTTAAGACAAATAATTAAA+TGG | - | tig0018025:117459-117478 | None:intergenic | 20.0% |
| !! | AAGTATACTGTTTCAAAAAA+AGG | - | tig0018025:117656-117675 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAACAATGGA+TGG | + | tig0018025:117768-117787 | Msa1363080:intron | 20.0% |
| !!! | TTTTTTTACATATATCCAGA+TGG | + | tig0018025:118432-118451 | Msa1363080:three_prime_UTR | 20.0% |
| !!! | AGATAGATTTGGGTTTTATT+GGG | - | tig0018025:115901-115920 | None:intergenic | 25.0% |
| !!! | AAGATAGATTTGGGTTTTAT+TGG | - | tig0018025:115902-115921 | None:intergenic | 25.0% |
| ! | ATAAAACCCAAATCTATCTT+AGG | + | tig0018025:115902-115921 | Msa1363080:five_prime_UTR | 25.0% |
| ! | TAAAACCCAAATCTATCTTA+GGG | + | tig0018025:115903-115922 | Msa1363080:five_prime_UTR | 25.0% |
| ! | AAAAACCCTAAGATAGATTT+GGG | - | tig0018025:115911-115930 | None:intergenic | 25.0% |
| ! | TAAAAACCCTAAGATAGATT+TGG | - | tig0018025:115912-115931 | None:intergenic | 25.0% |
| !!! | TGATTCTAAGATTAGGTTAA+AGG | - | tig0018025:116004-116023 | None:intergenic | 25.0% |
| ! | TTTCTACAAAATGTAAAGTG+CGG | - | tig0018025:116030-116049 | None:intergenic | 25.0% |
| ! | TTAAGAACAACACATTTCAA+TGG | + | tig0018025:116104-116123 | Msa1363080:exon | 25.0% |
| !! | ACATTTTCTCTTATACTAAG+GGG | - | tig0018025:116562-116581 | None:intergenic | 25.0% |
| !! | GTACATTTTCTCTTATACTA+AGG | - | tig0018025:116564-116583 | None:intergenic | 25.0% |
| ! | TGTAATGTATTTCTCTTTAC+AGG | + | tig0018025:117220-117239 | Msa1363080:intron | 25.0% |
| ! | TTCAAAACATCTTATACTGA+AGG | + | tig0018025:117298-117317 | Msa1363080:CDS | 25.0% |
| !! | CTTAACCATATTTTGCATTA+AGG | + | tig0018025:117472-117491 | Msa1363080:intron | 25.0% |
| ! | TAACACCTTAATGCAAAATA+TGG | - | tig0018025:117480-117499 | None:intergenic | 25.0% |
| !! | TTTATTTATTGCTTTAGCTC+AGG | + | tig0018025:117910-117929 | Msa1363080:intron | 25.0% |
| ! | AAAATAGCCAAAATTAAGAG+AGG | - | tig0018025:118203-118222 | None:intergenic | 25.0% |
| !! | TTGTAGAACCTAAATTTTTG+TGG | + | tig0018025:118226-118245 | Msa1363080:three_prime_UTR | 25.0% |
| !!! | CAATTTTTTATTTTGCAACG+AGG | + | tig0018025:118265-118284 | Msa1363080:three_prime_UTR | 25.0% |
| !! | GTGTTTTGTATTATTGTCAA+CGG | + | tig0018025:118348-118367 | Msa1363080:three_prime_UTR | 25.0% |
| ! | TAATTTACTAAACATCCATC+TGG | - | tig0018025:118450-118469 | None:intergenic | 25.0% |
| GAAAATGGAATTAATCTACG+AGG | - | tig0018025:116071-116090 | None:intergenic | 30.0% | |
| GAATTGGTATTCTTACACAA+AGG | + | tig0018025:116226-116245 | Msa1363080:CDS | 30.0% | |
| ! | TGGATTTTCTTCATTATCTG+CGG | + | tig0018025:116321-116340 | Msa1363080:intron | 30.0% |
| GTTGTGTTTATAAGCTATCT+TGG | + | tig0018025:116414-116433 | Msa1363080:intron | 30.0% | |
| TTGAAAGAGCTTATAGCTTA+TGG | - | tig0018025:116481-116500 | None:intergenic | 30.0% | |
| AATAAAAAAAAAGGGCAACC+CGG | + | tig0018025:116679-116698 | Msa1363080:intron | 30.0% | |
| AACACTAGAAATAATCCCAT+GGG | - | tig0018025:116896-116915 | None:intergenic | 30.0% | |
| AAACACTAGAAATAATCCCA+TGG | - | tig0018025:116897-116916 | None:intergenic | 30.0% | |
| !! | TAGAGTACTGGTAAAAATCA+AGG | + | tig0018025:117003-117022 | Msa1363080:CDS | 30.0% |
| CCAAAATAAAAGAAAGACCA+AGG | - | tig0018025:117195-117214 | None:intergenic | 30.0% | |
| !! | CCTTGGTCTTTCTTTTATTT+TGG | + | tig0018025:117192-117211 | Msa1363080:intron | 30.0% |
| ! | TTTAAGATCTTTGACCTCTT+CGG | - | tig0018025:117351-117370 | None:intergenic | 30.0% |
| ! | CATTAAGGTGTTACGTTTAA+AGG | + | tig0018025:117487-117506 | Msa1363080:intron | 30.0% |
| GCAATGTTATATCGTATGAA+GGG | + | tig0018025:117705-117724 | Msa1363080:intron | 30.0% | |
| AGAATTGCAAGAATGTGATT+TGG | + | tig0018025:117737-117756 | Msa1363080:intron | 30.0% | |
| GAATTGCAAGAATGTGATTT+GGG | + | tig0018025:117738-117757 | Msa1363080:intron | 30.0% | |
| AATTAAAACAATGGATGGTC+TGG | + | tig0018025:117773-117792 | Msa1363080:intron | 30.0% | |
| !!! | TTGTTTTGATCGAGTAGTTT+TGG | + | tig0018025:117968-117987 | Msa1363080:intron | 30.0% |
| GAATGGTTATTTACATACCT+AGG | - | tig0018025:117995-118014 | None:intergenic | 30.0% | |
| ! | AATAACCATTCTACTCCTTT+TGG | + | tig0018025:118004-118023 | Msa1363080:intron | 30.0% |
| ! | TTTTGTACTCCAAATATGCA+GGG | + | tig0018025:118112-118131 | Msa1363080:CDS | 30.0% |
| !! | CTAAATTTTTGTGGTGTTGA+GGG | + | tig0018025:118235-118254 | Msa1363080:three_prime_UTR | 30.0% |
| TGTAAAAAAACTGTTCTCGT+TGG | - | tig0018025:118422-118441 | None:intergenic | 30.0% | |
| GAATCATATGCATGTTTGAT+CGG | + | tig0018025:118484-118503 | Msa1363080:three_prime_UTR | 30.0% | |
| !!! | ATTTGGGTTTTATTGGGTGA+CGG | - | tig0018025:115895-115914 | None:intergenic | 35.0% |
| AAAATGGGAAGAAACGTGAA+AGG | - | tig0018025:115936-115955 | None:intergenic | 35.0% | |
| ACGAACGAAGCTTACAAAAT+GGG | - | tig0018025:115951-115970 | None:intergenic | 35.0% | |
| !! | GCGGTATTGATTCTAAGATT+AGG | - | tig0018025:116011-116030 | None:intergenic | 35.0% |
| GTTACGAGGAAAATGAATTG+CGG | - | tig0018025:116199-116218 | None:intergenic | 35.0% | |
| ATCTCATAATGCACTTGAGT+GGG | - | tig0018025:116507-116526 | None:intergenic | 35.0% | |
| TATCTCATAATGCACTTGAG+TGG | - | tig0018025:116508-116527 | None:intergenic | 35.0% | |
| !!! | GGGTTGCCCTTTTTTTTTAT+TGG | - | tig0018025:116680-116699 | None:intergenic | 35.0% |
| TAAAGGATTCCATAAGCTAG+TGG | - | tig0018025:117170-117189 | None:intergenic | 35.0% | |
| TTATGGAATCCTTTAAGCCT+TGG | + | tig0018025:117175-117194 | Msa1363080:intron | 35.0% | |
| AAAGAAAGACCAAGGCTTAA+AGG | - | tig0018025:117187-117206 | None:intergenic | 35.0% | |
| ATGTATTTCTCTTTACAGGC+AGG | + | tig0018025:117224-117243 | Msa1363080:intron | 35.0% | |
| ATCAAGACTCTGTCATTCAA+GGG | - | tig0018025:117374-117393 | None:intergenic | 35.0% | |
| TATCAAGACTCTGTCATTCA+AGG | - | tig0018025:117375-117394 | None:intergenic | 35.0% | |
| GAATGACAGAGTCTTGATAA+AGG | + | tig0018025:117376-117395 | Msa1363080:CDS | 35.0% | |
| ACCTGCAGCATCATAATTAA+AGG | - | tig0018025:117540-117559 | None:intergenic | 35.0% | |
| ! | TAACACCACTCTTCTAAAAG+AGG | + | tig0018025:117682-117701 | Msa1363080:intron | 35.0% |
| ! | AACACCACTCTTCTAAAAGA+GGG | + | tig0018025:117683-117702 | Msa1363080:intron | 35.0% |
| GGCAATGTTATATCGTATGA+AGG | + | tig0018025:117704-117723 | Msa1363080:intron | 35.0% | |
| TGTTATATCGTATGAAGGGA+AGG | + | tig0018025:117709-117728 | Msa1363080:intron | 35.0% | |
| ACTAGCATTATCCCTTAAGA+CGG | + | tig0018025:117851-117870 | Msa1363080:intron | 35.0% | |
| AACACATTCTACCGTCTTAA+GGG | - | tig0018025:117865-117884 | None:intergenic | 35.0% | |
| TACATCCAAAAGGAGTAGAA+TGG | - | tig0018025:118012-118031 | None:intergenic | 35.0% | |
| TATCACCTGTTACATCCAAA+AGG | - | tig0018025:118022-118041 | None:intergenic | 35.0% | |
| AAACCATTATCCATTTCACC+CGG | + | tig0018025:118081-118100 | Msa1363080:CDS | 35.0% | |
| ! | GTTTTGTACTCCAAATATGC+AGG | + | tig0018025:118111-118130 | Msa1363080:CDS | 35.0% |
| AATGACTTCAAAGGCAAAGA+TGG | + | tig0018025:118135-118154 | Msa1363080:CDS | 35.0% | |
| ! | TGGCTATCCTCTCTTAATTT+TGG | + | tig0018025:118193-118212 | Msa1363080:exon | 35.0% |
| CCTCAACACCACAAAAATTT+AGG | - | tig0018025:118237-118256 | None:intergenic | 35.0% | |
| !! | CCTAAATTTTTGTGGTGTTG+AGG | + | tig0018025:118234-118253 | Msa1363080:three_prime_UTR | 35.0% |
| ATGCATTGAAAACCATGAGA+AGG | - | tig0018025:118381-118400 | None:intergenic | 35.0% | |
| CACGAACGAAGCTTACAAAA+TGG | - | tig0018025:115952-115971 | None:intergenic | 40.0% | |
| ! | CATTTTGTAAGCTTCGTTCG+TGG | + | tig0018025:115950-115969 | Msa1363080:five_prime_UTR | 40.0% |
| AGGAACCTTTCTTCCTTTGA+AGG | + | tig0018025:116162-116181 | Msa1363080:CDS | 40.0% | |
| GCAATCCTTCAAAGGAAGAA+AGG | - | tig0018025:116170-116189 | None:intergenic | 40.0% | |
| CCAATTCTAGCATTGTTACG+AGG | - | tig0018025:116213-116232 | None:intergenic | 40.0% | |
| CCTCGTAACAATGCTAGAAT+TGG | + | tig0018025:116210-116229 | Msa1363080:CDS | 40.0% | |
| ! | CGGCTTTAACAACAATAGAC+GGG | - | tig0018025:116257-116276 | None:intergenic | 40.0% |
| ! | GCGGCTTTAACAACAATAGA+CGG | - | tig0018025:116258-116277 | None:intergenic | 40.0% |
| AGAAATAATCCCATGGGACA+GGG | - | tig0018025:116890-116909 | None:intergenic | 40.0% | |
| TAGAAATAATCCCATGGGAC+AGG | - | tig0018025:116891-116910 | None:intergenic | 40.0% | |
| GATGCAGAAGAGAAAACTCA+GGG | + | tig0018025:117025-117044 | Msa1363080:CDS | 40.0% | |
| CAAAGTGGACATTAGTGTGA+AGG | + | tig0018025:117135-117154 | Msa1363080:CDS | 40.0% | |
| GTTGTGTACTCAAAGTATGC+AGG | + | tig0018025:117254-117273 | Msa1363080:CDS | 40.0% | |
| AAAGTATGCAGGAACTGAAG+TGG | + | tig0018025:117265-117284 | Msa1363080:CDS | 40.0% | |
| TGGTATTCTTGAAACCGAAG+AGG | + | tig0018025:117334-117353 | Msa1363080:CDS | 40.0% | |
| ACAGAGTCTTGATAAAGGTG+TGG | + | tig0018025:117381-117400 | Msa1363080:intron | 40.0% | |
| GCCTTTAATTATGATGCTGC+AGG | + | tig0018025:117536-117555 | Msa1363080:intron | 40.0% | |
| !! | ATTGCCCTCTTTTAGAAGAG+TGG | - | tig0018025:117690-117709 | None:intergenic | 40.0% |
| CAACACATTCTACCGTCTTA+AGG | - | tig0018025:117866-117885 | None:intergenic | 40.0% | |
| ! | ATTGCTTTAGCTCAGGTCAT+TGG | + | tig0018025:117917-117936 | Msa1363080:intron | 40.0% |
| ! | TTTAGCTCAGGTCATTGGTT+TGG | + | tig0018025:117922-117941 | Msa1363080:intron | 40.0% |
| ! | CTACTCCTTTTGGATGTAAC+AGG | + | tig0018025:118014-118033 | Msa1363080:intron | 40.0% |
| ATGTAACAGGTGATAGCTGT+TGG | + | tig0018025:118027-118046 | Msa1363080:intron | 40.0% | |
| AACCATTATCCATTTCACCC+GGG | + | tig0018025:118082-118101 | Msa1363080:CDS | 40.0% | |
| GAGTACAAAACTGTATTCCC+GGG | - | tig0018025:118102-118121 | None:intergenic | 40.0% | |
| GGAGTACAAAACTGTATTCC+CGG | - | tig0018025:118103-118122 | None:intergenic | 40.0% | |
| GAAGTCATTCCCTGCATATT+TGG | - | tig0018025:118124-118143 | None:intergenic | 40.0% | |
| TATGCAGGGAATGACTTCAA+AGG | + | tig0018025:118126-118145 | Msa1363080:CDS | 40.0% | |
| CGTGGCACACTTTGTTGATA+AGG | + | tig0018025:115968-115987 | Msa1363080:five_prime_UTR | 45.0% | |
| !! | CTGCTTCATCGATTTCTACG+AGG | + | tig0018025:116142-116161 | Msa1363080:CDS | 45.0% |
| GGAAGTTCGCAATCCTTCAA+AGG | - | tig0018025:116178-116197 | None:intergenic | 45.0% | |
| CTACAGCGAGAGATCAAAGT+AGG | + | tig0018025:116612-116631 | Msa1363080:intron | 45.0% | |
| TATACATAAGCCCTGTCCCA+TGG | + | tig0018025:116877-116896 | Msa1363080:intron | 45.0% | |
| ATACATAAGCCCTGTCCCAT+GGG | + | tig0018025:116878-116897 | Msa1363080:intron | 45.0% | |
| CATACAACTGTCAAGCCACT+AGG | + | tig0018025:116977-116996 | Msa1363080:CDS | 45.0% | |
| ACCAGTACTCTATCACCTAG+TGG | - | tig0018025:116995-117014 | None:intergenic | 45.0% | |
| GGATGCAGAAGAGAAAACTC+AGG | + | tig0018025:117024-117043 | Msa1363080:CDS | 45.0% | |
| ! | GGCTTTGATTGAGCAGTTGA+TGG | - | tig0018025:117064-117083 | None:intergenic | 45.0% |
| ACTGCTCAATCAAAGCCTCA+AGG | + | tig0018025:117067-117086 | Msa1363080:CDS | 45.0% | |
| CTGCTCAATCAAAGCCTCAA+GGG | + | tig0018025:117068-117087 | Msa1363080:CDS | 45.0% | |
| TGCTCAATCAAAGCCTCAAG+GGG | + | tig0018025:117069-117088 | Msa1363080:CDS | 45.0% | |
| GACAGTTGGGAAGAACAAAG+TGG | + | tig0018025:117120-117139 | Msa1363080:CDS | 45.0% | |
| ! | TGAGTGATGCCACTAGCTTA+TGG | + | tig0018025:117158-117177 | Msa1363080:intron | 45.0% |
| GGAACTGAAGTGGAGTTCAA+TGG | + | tig0018025:117275-117294 | Msa1363080:CDS | 45.0% | |
| CTGAAGGATGATGACATCGT+TGG | + | tig0018025:117314-117333 | Msa1363080:CDS | 45.0% | |
| GAAGCTGAGGAAAAAACTGC+TGG | + | tig0018025:117564-117583 | Msa1363080:CDS | 45.0% | |
| ACCAAGGATAAGCCATCCAT+TGG | + | tig0018025:117609-117628 | Msa1363080:CDS | 45.0% | |
| AGAAAAGCTTACCGTGCCAA+TGG | - | tig0018025:117628-117647 | None:intergenic | 45.0% | |
| GGGATAATGCTAGTTGCTAC+AGG | - | tig0018025:117845-117864 | None:intergenic | 45.0% | |
| !!! | GATCGAGTAGTTTTGGTCCT+AGG | + | tig0018025:117975-117994 | Msa1363080:intron | 45.0% |
| TTCCCGGGTGAAATGGATAA+TGG | - | tig0018025:118087-118106 | None:intergenic | 45.0% | |
| AACTGTATTCCCGGGTGAAA+TGG | - | tig0018025:118094-118113 | None:intergenic | 45.0% | |
| TTTGAGAGCCTCAGATGTCA+TGG | + | tig0018025:118173-118192 | Msa1363080:CDS | 45.0% | |
| GATGCAACAGAGATTGTGCA+AGG | - | tig0018025:118327-118346 | None:intergenic | 45.0% | |
| ! | AACGGCTTTTCACCTTCTCA+TGG | + | tig0018025:118366-118385 | Msa1363080:three_prime_UTR | 45.0% |
| TACCTTGGGGGTAACAACAG+TGG | - | tig0018025:116280-116299 | None:intergenic | 50.0% | |
| GCCACTAGGTGATAGAGTAC+TGG | + | tig0018025:116991-117010 | Msa1363080:CDS | 50.0% | |
| GCAGAAGAGAAAACTCAGGG+TGG | + | tig0018025:117028-117047 | Msa1363080:CDS | 50.0% | |
| GCTCAATCAAAGCCTCAAGG+GGG | + | tig0018025:117070-117089 | Msa1363080:CDS | 50.0% | |
| ! | GAGGTAGTTGCTGTTGGAGA+CGG | + | tig0018025:117094-117113 | Msa1363080:CDS | 50.0% |
| ! | AGGTAGTTGCTGTTGGAGAC+GGG | + | tig0018025:117095-117114 | Msa1363080:CDS | 50.0% |
| TTGGAGACGGGAAGACAGTT+GGG | + | tig0018025:117107-117126 | Msa1363080:CDS | 50.0% | |
| GGGCAGATCATCAAGACAAC+TGG | - | tig0018025:117438-117457 | None:intergenic | 50.0% | |
| GCTGAGGAAAAAACTGCTGG+TGG | + | tig0018025:117567-117586 | Msa1363080:CDS | 50.0% | |
| !! | TGCTGGTGGTTTGTTGCTCA+CGG | + | tig0018025:117581-117600 | Msa1363080:CDS | 50.0% |
| GCCAATGGATGGCTTATCCT+TGG | - | tig0018025:117613-117632 | None:intergenic | 50.0% | |
| GGATAAGCCATCCATTGGCA+CGG | + | tig0018025:117614-117633 | Msa1363080:CDS | 50.0% | |
| AAGCTTACCGTGCCAATGGA+TGG | - | tig0018025:117624-117643 | None:intergenic | 50.0% | |
| AGGTGATAGCTGTTGGTCCA+GGG | + | tig0018025:118034-118053 | Msa1363080:intron | 50.0% | |
| GAGGATAGCCATGACATCTG+AGG | - | tig0018025:118184-118203 | None:intergenic | 50.0% | |
| CTTGGGGGTAACAACAGTGG+CGG | - | tig0018025:116277-116296 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | tig0018025:116701-116720 | None:intergenic | 55.0% |
| CACTAAAGCTCCCGCATACG+CGG | + | tig0018025:116704-116723 | Msa1363080:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+GGG | + | tig0018025:116705-116724 | Msa1363080:intron | 55.0% | |
| ATCAAAGCCTCAAGGGGGTG+AGG | + | tig0018025:117075-117094 | Msa1363080:CDS | 55.0% | |
| GTTGGAGACGGGAAGACAGT+TGG | + | tig0018025:117106-117125 | Msa1363080:CDS | 55.0% | |
| GTTGCTCACGGAAGCAACCA+AGG | + | tig0018025:117593-117612 | Msa1363080:CDS | 55.0% | |
| CAGGTGATAGCTGTTGGTCC+AGG | + | tig0018025:118033-118052 | Msa1363080:intron | 55.0% | |
| CTGTTGCCTTCGTCATCCAC+AGG | - | tig0018025:118060-118079 | None:intergenic | 55.0% | |
| CGCCACTGTTGTTACCCCCA+AGG | + | tig0018025:116275-116294 | Msa1363080:CDS | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | tig0018025:116700-116719 | None:intergenic | 60.0% |
| CTAAAGCTCCCGCATACGCG+GGG | + | tig0018025:116706-116725 | Msa1363080:intron | 60.0% | |
| ! | AAATGGTGGGACCCCCTTCC+CGG | - | tig0018025:116733-116752 | None:intergenic | 60.0% |
| GCAACTACCTCACCCCCTTG+AGG | - | tig0018025:117085-117104 | None:intergenic | 60.0% | |
| GGGGGTGAGGTAGTTGCTGT+TGG | + | tig0018025:117088-117107 | Msa1363080:CDS | 60.0% | |
| GCTGCAGGTTGCAGAAGCTG+AGG | + | tig0018025:117551-117570 | Msa1363080:intron | 60.0% | |
| AGCTGTTGGTCCAGGGCCTG+TGG | + | tig0018025:118041-118060 | Msa1363080:CDS | 65.0% | |
| CCTTCGTCATCCACAGGCCC+TGG | - | tig0018025:118054-118073 | None:intergenic | 65.0% | |
| CCAGGGCCTGTGGATGACGA+AGG | + | tig0018025:118051-118070 | Msa1363080:CDS | 65.0% | |
| TTCCCGGACCCCGCGTATGC+GGG | - | tig0018025:116717-116736 | None:intergenic | 70.0% | |
| CTTCCCGGACCCCGCGTATG+CGG | - | tig0018025:116718-116737 | None:intergenic | 70.0% | |
| GCATACGCGGGGTCCGGGAA+GGG | + | tig0018025:116717-116736 | Msa1363080:intron | 70.0% | |
| CATACGCGGGGTCCGGGAAG+GGG | + | tig0018025:116718-116737 | Msa1363080:intron | 70.0% | |
| ATACGCGGGGTCCGGGAAGG+GGG | + | tig0018025:116719-116738 | Msa1363080:intron | 70.0% | |
| GCTCCCGCATACGCGGGGTC+CGG | + | tig0018025:116711-116730 | Msa1363080:intron | 75.0% | |
| CTCCCGCATACGCGGGGTCC+GGG | + | tig0018025:116712-116731 | Msa1363080:intron | 75.0% | |
| CGCATACGCGGGGTCCGGGA+AGG | + | tig0018025:116716-116735 | Msa1363080:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018025 | gene | 115887 | 118530 | 115887 | ID=Msa1363080;Name=Msa1363080 |
| tig0018025 | mRNA | 115887 | 118530 | 115887 | ID=Msa1363080-mRNA-1;Parent=Msa1363080;Name=Msa1363080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|0.8|0.66|6|321|253 |
| tig0018025 | exon | 115887 | 115989 | 115887 | ID=Msa1363080-mRNA-1:exon:13364;Parent=Msa1363080-mRNA-1 |
| tig0018025 | exon | 116101 | 116296 | 116101 | ID=Msa1363080-mRNA-1:exon:13365;Parent=Msa1363080-mRNA-1 |
| tig0018025 | exon | 116977 | 117156 | 116977 | ID=Msa1363080-mRNA-1:exon:13366;Parent=Msa1363080-mRNA-1 |
| tig0018025 | exon | 117242 | 117397 | 117242 | ID=Msa1363080-mRNA-1:exon:13367;Parent=Msa1363080-mRNA-1 |
| tig0018025 | exon | 117558 | 117635 | 117558 | ID=Msa1363080-mRNA-1:exon:13368;Parent=Msa1363080-mRNA-1 |
| tig0018025 | exon | 118036 | 118530 | 118036 | ID=Msa1363080-mRNA-1:exon:13369;Parent=Msa1363080-mRNA-1 |
| tig0018025 | five_prime_UTR | 115887 | 115989 | 115887 | ID=Msa1363080-mRNA-1:five_prime_utr;Parent=Msa1363080-mRNA-1 |
| tig0018025 | five_prime_UTR | 116101 | 116122 | 116101 | ID=Msa1363080-mRNA-1:five_prime_utr;Parent=Msa1363080-mRNA-1 |
| tig0018025 | CDS | 116123 | 116296 | 116123 | ID=Msa1363080-mRNA-1:cds;Parent=Msa1363080-mRNA-1 |
| tig0018025 | CDS | 116977 | 117156 | 116977 | ID=Msa1363080-mRNA-1:cds;Parent=Msa1363080-mRNA-1 |
| tig0018025 | CDS | 117242 | 117397 | 117242 | ID=Msa1363080-mRNA-1:cds;Parent=Msa1363080-mRNA-1 |
| tig0018025 | CDS | 117558 | 117635 | 117558 | ID=Msa1363080-mRNA-1:cds;Parent=Msa1363080-mRNA-1 |
| tig0018025 | CDS | 118036 | 118209 | 118036 | ID=Msa1363080-mRNA-1:cds;Parent=Msa1363080-mRNA-1 |
| tig0018025 | three_prime_UTR | 118210 | 118530 | 118210 | ID=Msa1363080-mRNA-1:three_prime_utr;Parent=Msa1363080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
