AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482960 MtrunA17_Chr4g0073861 96.111 180 7 0 39 218 1 180 7.76e-116 328
Msa0482960 MtrunA17_Chr2g0305661 70.619 194 49 4 39 230 1 188 1.52e-89 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482960 AT4G30620.1 78.472 144 25 4 89 230 41 180 1.84e-73 221
Msa0482960 AT2G24020.1 76.761 142 27 3 92 230 44 182 1.03e-71 217
Msa0482960 AT2G24020.2 76.761 142 27 3 92 230 42 180 1.36e-71 216

Find 61 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATAGAGGACAGGAAAA+AGG 0.248586 3_3:+90693525 None:intergenic
ATCACTCATCCTTTCCTTCA+TGG 0.264347 3_3:+90693750 None:intergenic
TGTCCTCTATTACTTCCTTT+AGG 0.284905 3_3:-90693516 Msa0482960:intron
TCAAGTGCAAGCGGTGTGTC+TGG 0.297629 3_3:+90697433 None:intergenic
AGTGATCTTGCTCAGAGTTT+AGG 0.315621 3_3:-90693733 Msa0482960:CDS
TAATGAAAGTGGTGATAATA+AGG 0.335244 3_3:-90696660 Msa0482960:intron
ACCGAGGCTGCTATGGAATT+AGG 0.336676 3_3:-90694312 Msa0482960:CDS
TATTTGTCTTATACAATTCA+AGG 0.361108 3_3:-90693455 Msa0482960:three_prime_UTR
TTACATAGAGATGATGATAA+AGG 0.366088 3_3:+90697343 None:intergenic
GTTGCAGAAACTTTCACTTT+TGG 0.369999 3_3:-90693906 Msa0482960:intron
GACACACCGCTTGCACTTGA+AGG 0.386873 3_3:-90697430 Msa0482960:CDS
CTATGCAGAGCCGAGTTTGA+TGG 0.393847 3_3:-90694689 Msa0482960:intron
TTCAGAGTCCACGCCCTCTT+CGG 0.417036 3_3:-90696695 Msa0482960:CDS
ACAAATTACCGAGGCTGCTA+TGG 0.426700 3_3:-90694319 Msa0482960:CDS
TACATAGAGATGATGATAAA+GGG 0.429444 3_3:+90697344 None:intergenic
GTATCCGATTTGATTCTACT+TGG 0.436674 3_3:+90694825 None:intergenic
TGTGTAGGGATCACTTGAAA+TGG 0.437913 3_3:-90693572 Msa0482960:three_prime_UTR
TCTGGGTTTGAAGTTGAAGT+TGG 0.444250 3_3:+90697451 None:intergenic
CTGTGAGGGTGAGTTAATAA+AGG 0.456581 3_3:-90694663 Msa0482960:intron
GAGATGATGATAAAGGGTTC+CGG 0.466489 3_3:+90697350 None:intergenic
GTTGAAGTTGGAGTTGGAGT+TGG 0.467912 3_3:+90697463 None:intergenic
CTTGTTTACTCAGTTGTGTA+GGG 0.470936 3_3:-90693586 Msa0482960:three_prime_UTR
TCTTGTTTACTCAGTTGTGT+AGG 0.471274 3_3:-90693587 Msa0482960:three_prime_UTR
TTTGGTCACAGAGGCTTACA+AGG 0.475320 3_3:-90693888 Msa0482960:CDS
CAACCACTCAATGCTCAAAC+CGG 0.484679 3_3:-90697369 Msa0482960:CDS
TCGGTAATTTGTGTTCGTAC+AGG 0.488513 3_3:+90694330 None:intergenic
TGATTATAGGGCGGAATGCT+CGG 0.498257 3_3:-90694905 Msa0482960:intron
AGACCTAAAGGAAGTAATAG+AGG 0.501377 3_3:+90693513 None:intergenic
CAAGTGCAAGCGGTGTGTCT+GGG 0.502228 3_3:+90697434 None:intergenic
TTAGGAATGCCACCAGGTCT+CGG 0.506708 3_3:-90693715 Msa0482960:CDS
GCTTTCACAGTTTCTCTCAC+AGG 0.511069 3_3:-90697403 Msa0482960:CDS
TTTGAAGTTGAAGTTGGAGT+TGG 0.511833 3_3:+90697457 None:intergenic
ACCGCTTGCACTTGAAGGAA+TGG 0.518445 3_3:-90697425 Msa0482960:CDS
TCCTAATTCCATAGCAGCCT+CGG 0.521629 3_3:+90694311 None:intergenic
TCTGTTCGAGACTGTGAAGA+AGG 0.525704 3_3:-90694861 Msa0482960:CDS
TTGTCCAAGTAGAATCAAAT+CGG 0.528710 3_3:-90694829 Msa0482960:CDS
ATGCCACCAGGTCTCGGTGA+AGG 0.535474 3_3:-90693709 Msa0482960:CDS
AAAAGGGGTGAGGGGAGTAG+AGG 0.543965 3_3:+90693542 None:intergenic
GGCGGAATGCTCGGTCAGCT+CGG 0.544938 3_3:-90694896 Msa0482960:CDS
TGCCACCAGGTCTCGGTGAA+GGG 0.550963 3_3:-90693708 Msa0482960:CDS
GTGCTAACGTAGTTGATATG+AGG 0.552449 3_3:-90696766 Msa0482960:CDS
CATATCAACTACGTTAGCAC+TGG 0.554883 3_3:+90696769 None:intergenic
TTCAACCCTTCACCGAGACC+TGG 0.556038 3_3:+90693703 None:intergenic
TGCACACCAGAAGAGTGTCC+AGG 0.557903 3_3:-90693864 Msa0482960:intron
TAAAGGAAGTAATAGAGGAC+AGG 0.559751 3_3:+90693518 None:intergenic
TTGATATGAGGTTAGTATCC+CGG 0.570131 3_3:-90696754 Msa0482960:CDS
GACTGTGAAGAAGGCGCAAG+CGG 0.577851 3_3:-90694852 Msa0482960:CDS
GGGATCACTTGAAATGGAGA+TGG 0.579296 3_3:-90693566 Msa0482960:three_prime_UTR
AGAGTCCACGCCCTCTTCGG+AGG 0.582564 3_3:-90696692 Msa0482960:CDS
GCCATTCCTTCAAGTGCAAG+CGG 0.589519 3_3:+90697424 None:intergenic
CTCACAGTAACCATCAAACT+CGG 0.600828 3_3:+90694679 None:intergenic
GTTCCGGTTTGAGCATTGAG+TGG 0.601986 3_3:+90697366 None:intergenic
GGTTGAAGTGATGACAGAGA+AGG 0.611077 3_3:-90693687 Msa0482960:exon
TTGAGCATTGAGTGGTTGCG+TGG 0.613680 3_3:+90697374 None:intergenic
CAGAGTTTAGGAATGCCACC+AGG 0.628036 3_3:-90693721 Msa0482960:CDS
GAGTTTGATGGTTACTGTGA+GGG 0.628368 3_3:-90694677 Msa0482960:CDS
AACCCTTCACCGAGACCTGG+TGG 0.649082 3_3:+90693706 None:intergenic
GAAGTGATGACAGAGAAGGA+TGG 0.670547 3_3:-90693683 Msa0482960:exon
CGAGTTTGATGGTTACTGTG+AGG 0.677449 3_3:-90694678 Msa0482960:CDS
ATGAGGTTAGTATCCCGGCG+TGG 0.743978 3_3:-90696749 Msa0482960:CDS
TGTACGAACACAAATTACCG+AGG 0.748644 3_3:-90694328 Msa0482960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTGACATAAACTA+AGG + chr3_3:90693693-90693712 None:intergenic 15.0%
!!! TAATTTGTAATTACACAAAT+GGG + chr3_3:90694784-90694803 None:intergenic 15.0%
!!! ATAATTTGTAATTACACAAA+TGG + chr3_3:90694785-90694804 None:intergenic 15.0%
!! AAAATAAAATAAATGAACAC+AGG + chr3_3:90695303-90695322 None:intergenic 15.0%
!!! ACAAATTTTATTCAATGTAA+GGG + chr3_3:90695364-90695383 None:intergenic 15.0%
!! TTGAATAAAATTTGTGAAAT+AGG - chr3_3:90695369-90695388 Msa0482960:intron 15.0%
!! TACCAAATTAATTTATACAT+CGG - chr3_3:90695413-90695432 Msa0482960:intron 15.0%
!!! AAGAAAATCACTTTTATATT+TGG - chr3_3:90695841-90695860 Msa0482960:intron 15.0%
!!! AGAAAATCACTTTTATATTT+GGG - chr3_3:90695842-90695861 Msa0482960:intron 15.0%
!! ATATTCATAATAATTATTGG+TGG - chr3_3:90695996-90696015 Msa0482960:intron 15.0%
!! TATTCATAATAATTATTGGT+GGG - chr3_3:90695997-90696016 Msa0482960:intron 15.0%
!!! GTAAATTATTTGATCTTTTT+AGG - chr3_3:90696821-90696840 Msa0482960:intron 15.0%
!!! GTAAATTATTTGATCTTTTT+AGG - chr3_3:90696821-90696840 Msa0482960:intron 15.0%
!!! CTTTTTCAATAATCTAAATA+TGG - chr3_3:90696969-90696988 Msa0482960:intron 15.0%
!! ATTTGATATTTAAACATCTT+TGG - chr3_3:90697005-90697024 Msa0482960:intron 15.0%
!! TTTGATATTTAAACATCTTT+GGG - chr3_3:90697006-90697025 Msa0482960:intron 15.0%
!! AATAAAAATATAAGACCTAA+AGG + chr3_3:90697436-90697455 None:intergenic 15.0%
!!! TTATTTTTTTTGAGCAATTT+AGG - chr3_3:90697451-90697470 Msa0482960:CDS 15.0%
!!! AAATAAAAGTGCAAAATTCA+AGG + chr3_3:90693729-90693748 None:intergenic 20.0%
!!! TAGTTTGATTTTCTGATTTT+TGG - chr3_3:90693983-90694002 Msa0482960:intron 20.0%
!!! TCATTTATTTTATTTTCTCG+TGG - chr3_3:90695307-90695326 Msa0482960:intron 20.0%
!!! CATTTATTTTATTTTCTCGT+GGG - chr3_3:90695308-90695327 Msa0482960:intron 20.0%
!!! CACAAATTTTATTCAATGTA+AGG + chr3_3:90695365-90695384 None:intergenic 20.0%
!!! ATAAATTAATTTGGTACACA+TGG + chr3_3:90695409-90695428 None:intergenic 20.0%
!! AACCGATGTATAAATTAATT+TGG + chr3_3:90695418-90695437 None:intergenic 20.0%
!!! GTTTTATAAAGGTCTTAATT+AGG - chr3_3:90695645-90695664 Msa0482960:intron 20.0%
!!! AGTGATTTTCTTTTTTGTAT+TGG + chr3_3:90695833-90695852 None:intergenic 20.0%
!!! TTTTATATTTGGGAAAATGT+TGG - chr3_3:90695852-90695871 Msa0482960:intron 20.0%
!!! CAATTTTTAATTTGATGGAT+TGG + chr3_3:90695928-90695947 None:intergenic 20.0%
!! TCCATCAAATTAAAAATTGT+TGG - chr3_3:90695929-90695948 Msa0482960:intron 20.0%
!!! TCCAACAATTTTTAATTTGA+TGG + chr3_3:90695933-90695952 None:intergenic 20.0%
!! ATAATATAATAGATCTGCAA+TGG - chr3_3:90696447-90696466 Msa0482960:intron 20.0%
!!! TTTGATTAGGTTTAATTTTC+AGG - chr3_3:90696558-90696577 Msa0482960:intron 20.0%
!! TAATAGCTATACTATGATTT+AGG - chr3_3:90696753-90696772 Msa0482960:CDS 20.0%
!!! TTTAGGATTAGACTTTTATA+AGG - chr3_3:90696770-90696789 Msa0482960:CDS 20.0%
!! TTTATAAGGTGAACAAAAAT+AGG - chr3_3:90696784-90696803 Msa0482960:CDS 20.0%
!! TTTATAAGGTGAACAAAAAT+AGG - chr3_3:90696784-90696803 Msa0482960:CDS 20.0%
!! TATTTGTCTTATACAATTCA+AGG - chr3_3:90697479-90697498 Msa0482960:CDS 20.0%
! TACATAGAGATGATGATAAA+GGG + chr3_3:90693593-90693612 None:intergenic 25.0%
! TTACATAGAGATGATGATAA+AGG + chr3_3:90693594-90693613 None:intergenic 25.0%
! AATGAAATTAAAGTGCGTAA+TGG + chr3_3:90693661-90693680 None:intergenic 25.0%
! GCAAAATTCAAGGTTTAAAT+TGG + chr3_3:90693719-90693738 None:intergenic 25.0%
!!! AAGTTTATTTTCCAACGATA+CGG + chr3_3:90693762-90693781 None:intergenic 25.0%
!! ATTTTGTTAGTTGAATTCCT+TGG - chr3_3:90693825-90693844 Msa0482960:intron 25.0%
! TTGAAACATTCAAATACCAT+GGG + chr3_3:90693894-90693913 None:intergenic 25.0%
!! TTTGAAACATTCAAATACCA+TGG + chr3_3:90693895-90693914 None:intergenic 25.0%
! TCAGAAAATCAAACTAACTA+GGG + chr3_3:90693979-90693998 None:intergenic 25.0%
! ATCAGAAAATCAAACTAACT+AGG + chr3_3:90693980-90693999 None:intergenic 25.0%
!!! GTTGTTGACTTTAATTCTAT+AGG - chr3_3:90694131-90694150 Msa0482960:intron 25.0%
! GGAAAAAAAGATAATGAAAG+TGG - chr3_3:90694263-90694282 Msa0482960:intron 25.0%
! TAATGAAAGTGGTGATAATA+AGG - chr3_3:90694274-90694293 Msa0482960:intron 25.0%
! TGCATAAGTGACAATTATTA+AGG - chr3_3:90694411-90694430 Msa0482960:intron 25.0%
! ATGCTTTCATCAAAGAAAAA+TGG + chr3_3:90694456-90694475 None:intergenic 25.0%
! TTATAAAAAACCTCTTCTAC+AGG - chr3_3:90694565-90694584 Msa0482960:intron 25.0%
! TCTTAAAATGCATCTTTGTA+AGG + chr3_3:90694666-90694685 None:intergenic 25.0%
!! TTTAACATTACGAAGTATCA+TGG + chr3_3:90694755-90694774 None:intergenic 25.0%
! GACATGTAAATTATGTAGTA+AGG - chr3_3:90695084-90695103 Msa0482960:intron 25.0%
!! GATTCTCTTATAGTTTTTCT+TGG + chr3_3:90695158-90695177 None:intergenic 25.0%
!! TAATGAGTTGGATAGAAATA+TGG - chr3_3:90695199-90695218 Msa0482960:intron 25.0%
! GAAAACTACAAAAGTTTAAG+CGG + chr3_3:90695578-90695597 None:intergenic 25.0%
!! ATGCACAACATGTTTTATAA+AGG - chr3_3:90695634-90695653 Msa0482960:intron 25.0%
!!! TGTATTGGACTTTTTAAAGA+GGG + chr3_3:90695818-90695837 None:intergenic 25.0%
!!! TTGTATTGGACTTTTTAAAG+AGG + chr3_3:90695819-90695838 None:intergenic 25.0%
!!! TGGGTTTGTTAATTGATTAT+AGG - chr3_3:90696016-90696035 Msa0482960:intron 25.0%
!!! GGGTTTGTTAATTGATTATA+GGG - chr3_3:90696017-90696036 Msa0482960:intron 25.0%
! TTTGTTAATTGATTATAGGG+CGG - chr3_3:90696020-90696039 Msa0482960:intron 25.0%
!!! CTGTTTACTTCATTTTGATT+AGG - chr3_3:90696545-90696564 Msa0482960:intron 25.0%
! CTGCTTAAGGAAAATTTATA+AGG - chr3_3:90696844-90696863 Msa0482960:intron 25.0%
!! AATTTTTATGCACTGAATGT+TGG - chr3_3:90696929-90696948 Msa0482960:intron 25.0%
!! ATTTTTATGCACTGAATGTT+GGG - chr3_3:90696930-90696949 Msa0482960:intron 25.0%
! TCTAAATATGGTCTAGAAAT+TGG - chr3_3:90696981-90697000 Msa0482960:intron 25.0%
!!! CTTGAAAAGTTATTTTTACC+TGG + chr3_3:90697091-90697110 None:intergenic 25.0%
!!! GGTAAAAATAACTTTTCAAG+AGG - chr3_3:90697091-90697110 Msa0482960:intron 25.0%
! AACAAATCAACATACTACAA+AGG + chr3_3:90697136-90697155 None:intergenic 25.0%
!! TACTTCTTTTACTGTGATTA+TGG - chr3_3:90697316-90697335 Msa0482960:intron 25.0%
TCCTTGGTAAATTATCAGTT+TGG - chr3_3:90693841-90693860 Msa0482960:intron 30.0%
ACCAAACTGATAATTTACCA+AGG + chr3_3:90693845-90693864 None:intergenic 30.0%
ACTAAGGAAAAACACATTCA+CGG + chr3_3:90693931-90693950 None:intergenic 30.0%
! TGACATTACTTCACACATTT+TGG - chr3_3:90694032-90694051 Msa0482960:intron 30.0%
! GACATTACTTCACACATTTT+GGG - chr3_3:90694033-90694052 Msa0482960:intron 30.0%
! GATTAGATCCAACTTTTTGT+AGG + chr3_3:90694211-90694230 None:intergenic 30.0%
AATGAATGAATACTCAGACA+GGG - chr3_3:90694334-90694353 Msa0482960:CDS 30.0%
AAGCAAACAGATAGCAAATA+TGG + chr3_3:90694380-90694399 None:intergenic 30.0%
AATGGCAATGAAAAAAGTCA+TGG + chr3_3:90694438-90694457 None:intergenic 30.0%
!! TTCTTTGATGAAAGCATTAC+AGG - chr3_3:90694459-90694478 Msa0482960:intron 30.0%
TTGTGAGAACTTCTCATATT+TGG - chr3_3:90694626-90694645 Msa0482960:intron 30.0%
ATCTGTTATAAGACTGCATT+AGG - chr3_3:90694686-90694705 Msa0482960:intron 30.0%
TTGAAAGGTTTCTATTGCTT+GGG + chr3_3:90694728-90694747 None:intergenic 30.0%
ATTGAAAGGTTTCTATTGCT+TGG + chr3_3:90694729-90694748 None:intergenic 30.0%
GTAATTACACAAATGGGAAA+AGG + chr3_3:90694778-90694797 None:intergenic 30.0%
!!! ACACTGTGAATTCAGTTTTT+TGG - chr3_3:90694834-90694853 Msa0482960:CDS 30.0%
CGCTTAATTTATTTACGTGT+TGG + chr3_3:90694908-90694927 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr3_3:90695187-90695206 Msa0482960:intron 30.0%
TGGTATATGATAGAGCATAA+TGG - chr3_3:90695219-90695238 Msa0482960:intron 30.0%
AGTACACAAATATTGTGAAC+TGG - chr3_3:90695489-90695508 Msa0482960:intron 30.0%
GTACACAAATATTGTGAACT+GGG - chr3_3:90695490-90695509 Msa0482960:intron 30.0%
! TAATGATTGAGTTTTCGCTT+CGG + chr3_3:90695728-90695747 None:intergenic 30.0%
ATATATCATCCAACTCAGAA+GGG + chr3_3:90695764-90695783 None:intergenic 30.0%
TTGTCCAAGTAGAATCAAAT+CGG - chr3_3:90696105-90696124 Msa0482960:intron 30.0%
TGTGATTAACTCGTATAACT+TGG + chr3_3:90696200-90696219 None:intergenic 30.0%
! TTTTCTCACATAAGCATGAA+AGG + chr3_3:90696347-90696366 None:intergenic 30.0%
AAAATGTTAGAGAAGAACCT+CGG - chr3_3:90696371-90696390 Msa0482960:intron 30.0%
AAACCAAGAAATGGGTAATA+TGG + chr3_3:90696516-90696535 None:intergenic 30.0%
TGAAAGTGAAACCAAGAAAT+GGG + chr3_3:90696524-90696543 None:intergenic 30.0%
ATGAAAGTGAAACCAAGAAA+TGG + chr3_3:90696525-90696544 None:intergenic 30.0%
CTATTAGTCATCACTTATCA+CGG + chr3_3:90696739-90696758 None:intergenic 30.0%
! TTTTTATGCACTGAATGTTG+GGG - chr3_3:90696931-90696950 Msa0482960:intron 30.0%
! TTTGAAGTTGAAGTTGGAGT+TGG + chr3_3:90693480-90693499 None:intergenic 35.0%
TTACCCTTTGACATATAGCT+AGG - chr3_3:90693780-90693799 Msa0482960:intron 35.0%
TACCCTTTGACATATAGCTA+GGG - chr3_3:90693781-90693800 Msa0482960:intron 35.0%
ACTAGGGAAAAACACATTCT+AGG + chr3_3:90693963-90693982 None:intergenic 35.0%
TGTGTGAAGTAATGTCAGTA+GGG + chr3_3:90694029-90694048 None:intergenic 35.0%
ATGTGTGAAGTAATGTCAGT+AGG + chr3_3:90694030-90694049 None:intergenic 35.0%
TTGATATGAGGTTAGTATCC+CGG - chr3_3:90694180-90694199 Msa0482960:intron 35.0%
!!! ATCTTTTTTTCCTCCGAAGA+GGG + chr3_3:90694255-90694274 None:intergenic 35.0%
!!! TATCTTTTTTTCCTCCGAAG+AGG + chr3_3:90694256-90694275 None:intergenic 35.0%
ATGGAAAAAGAAAGCTGAGA+TGG + chr3_3:90694304-90694323 None:intergenic 35.0%
! TCATTCATTCGTAGCATTGA+TGG + chr3_3:90694323-90694342 None:intergenic 35.0%
GAATGAATGAATACTCAGAC+AGG - chr3_3:90694333-90694352 Msa0482960:CDS 35.0%
AATGAGATGAAGATCGAACA+AGG + chr3_3:90694497-90694516 None:intergenic 35.0%
!! AACTTCTCATATTTGGTGTG+TGG - chr3_3:90694633-90694652 Msa0482960:intron 35.0%
GTTATAAGACTGCATTAGGT+AGG - chr3_3:90694690-90694709 Msa0482960:intron 35.0%
!! AAGTATCATGGTGGATTGAA+AGG + chr3_3:90694743-90694762 None:intergenic 35.0%
! AACATTACGAAGTATCATGG+TGG + chr3_3:90694752-90694771 None:intergenic 35.0%
TAATATCCACCTTCAATGCT+AGG - chr3_3:90694807-90694826 Msa0482960:intron 35.0%
! AGTGTAATTCCTAGCATTGA+AGG + chr3_3:90694819-90694838 None:intergenic 35.0%
CATGTTATCCTTTGTTCGTA+TGG - chr3_3:90694858-90694877 Msa0482960:CDS 35.0%
AACAACATTAGAGAGAGAGT+TGG - chr3_3:90694996-90695015 Msa0482960:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG - chr3_3:90694997-90695016 Msa0482960:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr3_3:90695022-90695041 Msa0482960:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr3_3:90695025-90695044 Msa0482960:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr3_3:90695029-90695048 None:intergenic 35.0%
AAACTAGACTTAGGTGGTTT+GGG - chr3_3:90695048-90695067 Msa0482960:intron 35.0%
AGTAAGGAGAATAGATCAGA+TGG - chr3_3:90695100-90695119 Msa0482960:intron 35.0%
GAGAGTAGTCAAATTACTAG+AGG - chr3_3:90695122-90695141 Msa0482960:intron 35.0%
TATTCCTCAAACAAGTCACA+AGG - chr3_3:90695437-90695456 Msa0482960:intron 35.0%
TATTGTGAACTGGGTAAAAG+AGG - chr3_3:90695499-90695518 Msa0482960:intron 35.0%
ATTGATCCATGACAAACCTT+CGG - chr3_3:90695683-90695702 Msa0482960:intron 35.0%
TATATCATCCAACTCAGAAG+GGG + chr3_3:90695763-90695782 None:intergenic 35.0%
CATATATCATCCAACTCAGA+AGG + chr3_3:90695765-90695784 None:intergenic 35.0%
! GTATCCGATTTGATTCTACT+TGG + chr3_3:90696112-90696131 None:intergenic 35.0%
GTACCATATTACCCATTTCT+TGG - chr3_3:90696510-90696529 Msa0482960:intron 35.0%
!!! AATTTTCAGGTGACACTATC+AGG - chr3_3:90696571-90696590 Msa0482960:intron 35.0%
!!! ATTTTCAGGTGACACTATCA+GGG - chr3_3:90696572-90696591 Msa0482960:intron 35.0%
GCTATTAGATACAATCTGAC+AGG + chr3_3:90696701-90696720 None:intergenic 35.0%
!! TGATCTTTTTAGGCTGCTTA+AGG - chr3_3:90696831-90696850 Msa0482960:intron 35.0%
!! TGATCTTTTTAGGCTGCTTA+AGG - chr3_3:90696831-90696850 Msa0482960:intron 35.0%
! GTTGCAGAAACTTTCACTTT+TGG - chr3_3:90697028-90697047 Msa0482960:intron 35.0%
!! ATGCTGTTGCTTATGTTTTC+AGG - chr3_3:90697161-90697180 Msa0482960:intron 35.0%
!!! TAGTTTTGTATGCGAAATCG+AGG + chr3_3:90697279-90697298 None:intergenic 35.0%
! TCTTGTTTACTCAGTTGTGT+AGG - chr3_3:90697347-90697366 Msa0482960:CDS 35.0%
CTTGTTTACTCAGTTGTGTA+GGG - chr3_3:90697348-90697367 Msa0482960:CDS 35.0%
TAATAGAGGACAGGAAAAAG+GGG + chr3_3:90697410-90697429 None:intergenic 35.0%
GTAATAGAGGACAGGAAAAA+GGG + chr3_3:90697411-90697430 None:intergenic 35.0%
AGTAATAGAGGACAGGAAAA+AGG + chr3_3:90697412-90697431 None:intergenic 35.0%
TAAAGGAAGTAATAGAGGAC+AGG + chr3_3:90697419-90697438 None:intergenic 35.0%
TGTCCTCTATTACTTCCTTT+AGG - chr3_3:90697418-90697437 Msa0482960:CDS 35.0%
AGACCTAAAGGAAGTAATAG+AGG + chr3_3:90697424-90697443 None:intergenic 35.0%
! TCTGGGTTTGAAGTTGAAGT+TGG + chr3_3:90693486-90693505 None:intergenic 40.0%
GAGATGATGATAAAGGGTTC+CGG + chr3_3:90693587-90693606 None:intergenic 40.0%
AGCCCTAGCTATATGTCAAA+GGG + chr3_3:90693786-90693805 None:intergenic 40.0%
TAGCCCTAGCTATATGTCAA+AGG + chr3_3:90693787-90693806 None:intergenic 40.0%
! GGGAAAAACACATTCTAGGA+TGG + chr3_3:90693959-90693978 None:intergenic 40.0%
AGTAATGTCAGTAGGGACTA+TGG + chr3_3:90694022-90694041 None:intergenic 40.0%
CATATCAACTACGTTAGCAC+TGG + chr3_3:90694168-90694187 None:intergenic 40.0%
! GTGCTAACGTAGTTGATATG+AGG - chr3_3:90694168-90694187 Msa0482960:intron 40.0%
AAAGAACACTCCTGTAGAAG+AGG + chr3_3:90694578-90694597 None:intergenic 40.0%
! GTAATTCCTAGCATTGAAGG+TGG + chr3_3:90694816-90694835 None:intergenic 40.0%
ACTCTGTTCCATACGAACAA+AGG + chr3_3:90694869-90694888 None:intergenic 40.0%
! TTCGTATGGAACAGAGTGTT+GGG - chr3_3:90694872-90694891 Msa0482960:CDS 40.0%
TAGAGATGAGGATGTTGCAT+TGG - chr3_3:90694937-90694956 Msa0482960:intron 40.0%
CAACATTAGAGAGAGAGTTG+GGG - chr3_3:90694998-90695017 Msa0482960:intron 40.0%
!! AGATGGTGGAAACTAGACTT+AGG - chr3_3:90695039-90695058 Msa0482960:intron 40.0%
GAAACTAGACTTAGGTGGTT+TGG - chr3_3:90695047-90695066 Msa0482960:intron 40.0%
!! AGTACCTTGTGACTTGTTTG+AGG + chr3_3:90695444-90695463 None:intergenic 40.0%
! TAAAAGAGGTTCTGGTAGTG+TGG - chr3_3:90695513-90695532 Msa0482960:intron 40.0%
CTTCTATGGATCAAGTCTCT+TGG + chr3_3:90695553-90695572 None:intergenic 40.0%
AAGTTTAAGCGGTGCTTCTA+TGG + chr3_3:90695567-90695586 None:intergenic 40.0%
! AGTTTTCGCTTCGGCATATA+AGG + chr3_3:90695719-90695738 None:intergenic 40.0%
GCACAATATCATGTGACACA+TGG - chr3_3:90695889-90695908 Msa0482960:intron 40.0%
CTCACAGTAACCATCAAACT+CGG + chr3_3:90696258-90696277 None:intergenic 40.0%
! GAGTTTGATGGTTACTGTGA+GGG - chr3_3:90696257-90696276 Msa0482960:intron 40.0%
CTGTGAGGGTGAGTTAATAA+AGG - chr3_3:90696271-90696290 Msa0482960:intron 40.0%
! TCGGTAATTTGTGTTCGTAC+AGG + chr3_3:90696607-90696626 None:intergenic 40.0%
TGTACGAACACAAATTACCG+AGG - chr3_3:90696606-90696625 Msa0482960:intron 40.0%
!! ACTTTCACTTTTGGTCACAG+AGG - chr3_3:90697037-90697056 Msa0482960:intron 40.0%
! TTTTTACCTGGACACTCTTC+TGG + chr3_3:90697079-90697098 None:intergenic 40.0%
!! CTTATGTTTTCAGGCCATGA+AGG - chr3_3:90697170-90697189 Msa0482960:intron 40.0%
ATCACTCATCCTTTCCTTCA+TGG + chr3_3:90697187-90697206 None:intergenic 40.0%
AGTGATCTTGCTCAGAGTTT+AGG - chr3_3:90697201-90697220 Msa0482960:intron 40.0%
TGTGTAGGGATCACTTGAAA+TGG - chr3_3:90697362-90697381 Msa0482960:CDS 40.0%
GTTGAAGTTGGAGTTGGAGT+TGG + chr3_3:90693474-90693493 None:intergenic 45.0%
GCTTTCACAGTTTCTCTCAC+AGG - chr3_3:90693531-90693550 Msa0482960:three_prime_UTR 45.0%
CAACCACTCAATGCTCAAAC+CGG - chr3_3:90693565-90693584 Msa0482960:three_prime_UTR 45.0%
TTCGTGTTTGACCGTATCGT+TGG - chr3_3:90693748-90693767 Msa0482960:CDS 45.0%
!! TTCTAGGATGGCACTCACTA+AGG + chr3_3:90693947-90693966 None:intergenic 45.0%
GTTCGTATGGAACAGAGTGT+TGG - chr3_3:90694871-90694890 Msa0482960:CDS 45.0%
AGGATGTTGCATTGGATGTG+TGG - chr3_3:90694945-90694964 Msa0482960:intron 45.0%
TGGTGGAAACTAGACTTAGG+TGG - chr3_3:90695042-90695061 Msa0482960:intron 45.0%
! AAGCCTTATCCCACTATGTG+GGG + chr3_3:90695268-90695287 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG + chr3_3:90695269-90695288 None:intergenic 45.0%
GAACTGGGTAAAAGAGGTTC+TGG - chr3_3:90695505-90695524 Msa0482960:intron 45.0%
GAAGAACCGAAGGTTTGTCA+TGG + chr3_3:90695692-90695711 None:intergenic 45.0%
ATAAGGCAGTGAAGAACCGA+AGG + chr3_3:90695702-90695721 None:intergenic 45.0%
TGATTATAGGGCGGAATGCT+CGG - chr3_3:90696029-90696048 Msa0482960:intron 45.0%
TCTGTTCGAGACTGTGAAGA+AGG - chr3_3:90696073-90696092 Msa0482960:intron 45.0%
! CGAGTTTGATGGTTACTGTG+AGG - chr3_3:90696256-90696275 Msa0482960:intron 45.0%
CACAACATTAGAGAGAGAGC+AGG + chr3_3:90696308-90696327 None:intergenic 45.0%
GCTCTCTCTCTAATGTTGTG+TGG - chr3_3:90696308-90696327 Msa0482960:intron 45.0%
CAACTCTAACTATTGTGCCG+AGG + chr3_3:90696391-90696410 None:intergenic 45.0%
ACAAATTACCGAGGCTGCTA+TGG - chr3_3:90696615-90696634 Msa0482960:intron 45.0%
TCCTAATTCCATAGCAGCCT+CGG + chr3_3:90696626-90696645 None:intergenic 45.0%
TTTGGTCACAGAGGCTTACA+AGG - chr3_3:90697046-90697065 Msa0482960:intron 45.0%
!! GTTTTCAGGCCATGAAGGAA+AGG - chr3_3:90697175-90697194 Msa0482960:intron 45.0%
GGTTGAAGTGATGACAGAGA+AGG - chr3_3:90697247-90697266 Msa0482960:intron 45.0%
GAAGTGATGACAGAGAAGGA+TGG - chr3_3:90697251-90697270 Msa0482960:intron 45.0%
GGGATCACTTGAAATGGAGA+TGG - chr3_3:90697368-90697387 Msa0482960:CDS 45.0%
!! ATAATATTCATAATAATTAT+TGG - chr3_3:90695993-90696012 Msa0482960:intron 5.0%
!!! AATTATTGTTTTTTTTTTTT+TGG - chr3_3:90696168-90696187 Msa0482960:intron 5.0%
ACCGCTTGCACTTGAAGGAA+TGG - chr3_3:90693509-90693528 Msa0482960:intron 50.0%
GCCATTCCTTCAAGTGCAAG+CGG + chr3_3:90693513-90693532 None:intergenic 50.0%
!! TTGAGCATTGAGTGGTTGCG+TGG + chr3_3:90693563-90693582 None:intergenic 50.0%
!! GTTCCGGTTTGAGCATTGAG+TGG + chr3_3:90693571-90693590 None:intergenic 50.0%
! AACTTTTTGTAGGCCACGCC+GGG + chr3_3:90694201-90694220 None:intergenic 50.0%
! CAACTTTTTGTAGGCCACGC+CGG + chr3_3:90694202-90694221 None:intergenic 50.0%
GCGACAGCGTAATAGAGATG+AGG - chr3_3:90694925-90694944 Msa0482960:intron 50.0%
CTTATCCCACTATGTGGGGT+CGG + chr3_3:90695264-90695283 None:intergenic 50.0%
! CCAAGCCTTATCCCACTATG+TGG + chr3_3:90695270-90695289 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG - chr3_3:90695267-90695286 Msa0482960:intron 50.0%
CAAGTCTCTTGGATGCAGAC+AGG + chr3_3:90695542-90695561 None:intergenic 50.0%
AGTTCTTGCCCCTTCTGAGT+TGG - chr3_3:90695752-90695771 Msa0482960:intron 50.0%
TCAAACTCGGCTCTGCATAG+TGG + chr3_3:90696245-90696264 None:intergenic 50.0%
CTATGCAGAGCCGAGTTTGA+TGG - chr3_3:90696245-90696264 Msa0482960:intron 50.0%
TGCAGACTCAAGGAAAGGGT+TGG + chr3_3:90696475-90696494 None:intergenic 50.0%
ACCCTTTCCTTGAGTCTGCA+AGG - chr3_3:90696475-90696494 Msa0482960:intron 50.0%
GCCTTGCAGACTCAAGGAAA+GGG + chr3_3:90696479-90696498 None:intergenic 50.0%
TGCCTTGCAGACTCAAGGAA+AGG + chr3_3:90696480-90696499 None:intergenic 50.0%
ATCTCTGCCTTGCAGACTCA+AGG + chr3_3:90696485-90696504 None:intergenic 50.0%
ACCGAGGCTGCTATGGAATT+AGG - chr3_3:90696622-90696641 Msa0482960:intron 50.0%
CAGAGTTTAGGAATGCCACC+AGG - chr3_3:90697213-90697232 Msa0482960:intron 50.0%
TTAGGAATGCCACCAGGTCT+CGG - chr3_3:90697219-90697238 Msa0482960:intron 50.0%
AGGACAGGAAAAAGGGGTGA+GGG + chr3_3:90697404-90697423 None:intergenic 50.0%
CAAGTGCAAGCGGTGTGTCT+GGG + chr3_3:90693503-90693522 None:intergenic 55.0%
TCAAGTGCAAGCGGTGTGTC+TGG + chr3_3:90693504-90693523 None:intergenic 55.0%
GACACACCGCTTGCACTTGA+AGG - chr3_3:90693504-90693523 Msa0482960:intron 55.0%
GTCAAGCGCAGAACAACCCA+TGG - chr3_3:90693875-90693894 Msa0482960:CDS 55.0%
ATGAGGTTAGTATCCCGGCG+TGG - chr3_3:90694185-90694204 Msa0482960:intron 55.0%
CGGCGTGGCCTACAAAAAGT+TGG - chr3_3:90694200-90694219 Msa0482960:intron 55.0%
TTCAGAGTCCACGCCCTCTT+CGG - chr3_3:90694239-90694258 Msa0482960:intron 55.0%
! TTTTTCCTCCGAAGAGGGCG+TGG + chr3_3:90694250-90694269 None:intergenic 55.0%
GGTCGGCTACATGGATCAGA+CGG + chr3_3:90695247-90695266 None:intergenic 55.0%
ACTATGTGGGGTCGGCTACA+TGG + chr3_3:90695256-90695275 None:intergenic 55.0%
ATGTAGCCGACCCCACATAG+TGG - chr3_3:90695255-90695274 Msa0482960:intron 55.0%
TGTAGCCGACCCCACATAGT+GGG - chr3_3:90695256-90695275 Msa0482960:intron 55.0%
! CGACCCCACATAGTGGGATA+AGG - chr3_3:90695262-90695281 Msa0482960:intron 55.0%
! GACTGTGAAGAAGGCGCAAG+CGG - chr3_3:90696082-90696101 Msa0482960:intron 55.0%
!! TGCACACCAGAAGAGTGTCC+AGG - chr3_3:90697070-90697089 Msa0482960:intron 55.0%
TTCAACCCTTCACCGAGACC+TGG + chr3_3:90697234-90697253 None:intergenic 55.0%
AAAAGGGGTGAGGGGAGTAG+AGG + chr3_3:90697395-90697414 None:intergenic 55.0%
GGACAGGAAAAAGGGGTGAG+GGG + chr3_3:90697403-90697422 None:intergenic 55.0%
GAGGACAGGAAAAAGGGGTG+AGG + chr3_3:90697405-90697424 None:intergenic 55.0%
ATGCCACCAGGTCTCGGTGA+AGG - chr3_3:90697225-90697244 Msa0482960:intron 60.0%
TGCCACCAGGTCTCGGTGAA+GGG - chr3_3:90697226-90697245 Msa0482960:intron 60.0%
AACCCTTCACCGAGACCTGG+TGG + chr3_3:90697231-90697250 None:intergenic 60.0%
AGAGTCCACGCCCTCTTCGG+AGG - chr3_3:90694242-90694261 Msa0482960:intron 65.0%
GGCGGAATGCTCGGTCAGCT+CGG - chr3_3:90696038-90696057 Msa0482960:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 90693414 90697542 90693414 ID=Msa0482960;Name=Msa0482960
chr3_3 mRNA 90693414 90697542 90693414 ID=Msa0482960-mRNA-1;Parent=Msa0482960;Name=Msa0482960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|1|1|0.85|0.75|8|252|230
chr3_3 exon 90693414 90693483 90693414 ID=Msa0482960-mRNA-1:exon:26482;Parent=Msa0482960-mRNA-1
chr3_3 exon 90693517 90693773 90693517 ID=Msa0482960-mRNA-1:exon:26481;Parent=Msa0482960-mRNA-1
chr3_3 exon 90693865 90693921 90693865 ID=Msa0482960-mRNA-1:exon:26480;Parent=Msa0482960-mRNA-1
chr3_3 exon 90694305 90694376 90694305 ID=Msa0482960-mRNA-1:exon:26479;Parent=Msa0482960-mRNA-1
chr3_3 exon 90694664 90694703 90694664 ID=Msa0482960-mRNA-1:exon:26478;Parent=Msa0482960-mRNA-1
chr3_3 exon 90694809 90694918 90694809 ID=Msa0482960-mRNA-1:exon:26477;Parent=Msa0482960-mRNA-1
chr3_3 exon 90696661 90696803 90696661 ID=Msa0482960-mRNA-1:exon:26476;Parent=Msa0482960-mRNA-1
chr3_3 exon 90697347 90697542 90697347 ID=Msa0482960-mRNA-1:exon:26475;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90697347 90697542 90697347 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90696661 90696803 90696661 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90694809 90694918 90694809 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90694664 90694703 90694664 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90694305 90694376 90694305 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90693865 90693921 90693865 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 CDS 90693699 90693773 90693699 ID=Msa0482960-mRNA-1:cds;Parent=Msa0482960-mRNA-1
chr3_3 three_prime_UTR 90693517 90693698 90693517 ID=Msa0482960-mRNA-1:three_prime_utr;Parent=Msa0482960-mRNA-1
chr3_3 three_prime_UTR 90693414 90693483 90693414 ID=Msa0482960-mRNA-1:three_prime_utr;Parent=Msa0482960-mRNA-1
Gene Sequence

>Msa0482960

AAAAAAAAAAATCTTGATATTATCTATCTGACAGAACTCACAGAAGTAACATCATCTCCAACTCCAACTCCAACTTCAACTTCAAACCCAGACACACCGCTTGCACTTGAAGGAATGGCTTTCACAGTTTCTCTCACAGGTCACATCCACGCAACCACTCAATGCTCAAACCGGAACCCTTTATCATCATCTCTATGTAAACTAAGCTCCAGTGCTAACGTAGTTGATATGAGGTTAGTATCCCGGCGTGGCCTACAAAAAGTTGGATCTAATCATAGAAATTTCAGAGTCCACGCCCTCTTCGGAGGAAAAAAAGATAATGAAAGTGGTGATAATAAGGGCGGAATGCTCGGTCAGCTCGGAAACATGCAAAATCTGTTCGAGACTGTGAAGAAGGCGCAAGCGGTTGTCCAAGTAGAATCAAATCGGATACAGAAAGAACTTGCTGCAGCCGAGTTTGATGGTTACTGTGAGGGTGAGTTAATAAAGGTGACACTATCAGGGAATCAGCAACCTGTACGAACACAAATTACCGAGGCTGCTATGGAATTAGGATCAGAAAAACTTTCACTTTTGGTCACAGAGGCTTACAAGGATGCACACCAGAAGAGTGTCCAGGCCATGAAGGAAAGGATGAGTGATCTTGCTCAGAGTTTAGGAATGCCACCAGGTCTCGGTGAAGGGTTGAAGTGA

Protein sequence

>Msa0482960

KKKNLDIIYLTELTEVTSSPTPTPTSTSNPDTPLALEGMAFTVSLTGHIHATTQCSNRNPLSSSLCKLSSSANVVDMRLVSRRGLQKVGSNHRNFRVHALFGGKKDNESGDNKGGMLGQLGNMQNLFETVKKAQAVVQVESNRIQKELAAAEFDGYCEGELIKVTLSGNQQPVRTQITEAAMELGSEKLSLLVTEAYKDAHQKSVQAMKERMSDLAQSLGMPPGLGEGLK*