AlfalfaGEDB | Msa0376750

M. sativa cultivar zhongmu-4 / Msa0376750

KEGG: K20241
GO: -
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376750	XP_013461436.1	95.035	705	32	1	1	705	1	702	0.0	1351

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376750	sp\|Q9XSC3\|WDR44_BOVIN	35.897	351	197	12	221	558	479	814	1.11e-53	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376750	A0A072V1A7	95.035	705	32	1	1	705	1	702	0.0	1351

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0376750	0.817011	4.113788e-52	-8.615850e-47
Msa0064920	Msa0376750	0.806458	8.146364e-50	-8.615850e-47
Msa0237200	Msa0376750	0.805972	1.031212e-49	-8.615850e-47
Msa0262700	Msa0376750	0.815048	1.128414e-51	-8.615850e-47
Msa0274970	Msa0376750	0.800827	1.200612e-48	-8.615850e-47
Msa0280110	Msa0376750	0.802070	6.678950e-49	-8.615850e-47
Msa0315680	Msa0376750	0.801913	7.195558e-49	-8.615850e-47
Msa0376020	Msa0376750	0.816646	4.968141e-52	-8.615850e-47
Msa0376750	Msa0471690	0.974784	9.038986e-139	-8.615850e-47
Msa0376750	Msa0483280	0.806454	8.161325e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376750	MtrunA17_Chr3g0127171	95.035	705	32	1	1	705	1	702	0.0	1351
Msa0376750	MtrunA17_Chr1g0146771	61.433	726	238	15	1	703	1	707	0.0	836
Msa0376750	MtrunA17_Chr8g0388841	43.370	724	363	15	11	705	9	714	0.0	546
Msa0376750	MtrunA17_Chr8g0384061	38.152	671	328	16	46	703	47	643	1.46e-126	390
Msa0376750	MtrunA17_Chr2g0317931	42.468	551	251	13	198	705	331	858	7.99e-125	392
Msa0376750	MtrunA17_Chr7g0238321	46.565	393	193	6	206	588	381	766	3.73e-93	310
Msa0376750	MtrunA17_Chr4g0067151	29.075	227	145	9	343	562	66	283	1.69e-19	90.5
Msa0376750	MtrunA17_Chr4g0067151	27.350	234	140	9	243	464	19	234	9.47e-13	70.1
Msa0376750	MtrunA17_Chr1g0185501	25.833	240	158	8	330	562	48	274	1.06e-18	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376750	AT5G24320.1	46.879	721	319	16	11	705	12	694	0.0	592
Msa0376750	AT5G24320.2	46.897	725	317	17	11	705	12	698	0.0	591
Msa0376750	AT5G53500.2	47.280	717	299	16	1	703	1	652	0.0	580
Msa0376750	AT5G53500.1	47.280	717	299	16	1	703	1	652	0.0	580
Msa0376750	AT5G42010.1	48.496	532	240	13	191	705	195	709	4.45e-163	486
Msa0376750	AT1G64610.2	49.432	528	217	14	189	705	159	647	1.27e-158	473
Msa0376750	AT1G64610.1	49.432	528	217	14	189	705	159	647	1.27e-158	473
Msa0376750	AT5G42010.2	54.118	340	151	4	191	525	195	534	2.59e-125	384
Msa0376750	AT5G54200.1	45.040	504	237	12	224	703	336	823	6.55e-123	386
Msa0376750	AT3G15470.1	42.270	511	253	11	224	705	386	883	3.35e-118	375

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Find 232 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACTTCCTGGCAGA+GGG	0.579638	3_1:+76988550	Msa0376750:CDS
AAACCATTGCATGAGTTCCG+TGG	0.589350	3_1:+76987545	Msa0376750:CDS
AAACTTCACTTCTATGCCCA+CGG	0.602774	3_1:-76987562	None:intergenic
AAAGAGTGTGAGAGAGCGTA+GGG	0.507140	3_1:+76986665	Msa0376750:CDS
AAATCACATTAAGCCCATCA+AGG	0.539545	3_1:-76988745	None:intergenic
AAATCAGTTGGTAGTTGCTA+AGG	0.492824	3_1:+76986953	Msa0376750:CDS
AAATGATCCTGCGATTGATT+TGG	0.309802	3_1:-76989619	None:intergenic
AAATTGCACCTTCATGCGCT+TGG	0.462786	3_1:-76987250	None:intergenic
AAATTTGGAGAAAAGAATGA+GGG	0.614888	3_1:+76986905	Msa0376750:CDS
AACAACACAAGCTGAATCTG+CGG	0.632119	3_1:-76987492	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGTGTGTGTTTGAAAATT+AGG	-	chr3_1:76985969-76985988	None:intergenic	30.0%
GGTATGAATAAATTGTTGGA+AGG	-	chr3_1:76986058-76986077	None:intergenic	30.0%
TAAAAGCTGTGAAGACAAAA+GGG	-	chr3_1:76986079-76986098	None:intergenic	30.0%
TTAAAAGCTGTGAAGACAAA+AGG	-	chr3_1:76986080-76986099	None:intergenic	30.0%
ATACCTGGTTATTATGGATT+GGG	+	chr3_1:76986182-76986201	Msa0376750:intron	30.0%
ATGTGTAGTTGTTTATGATC+TGG	+	chr3_1:76986383-76986402	Msa0376750:intron	30.0%
TGTGTAGTTGTTTATGATCT+GGG	+	chr3_1:76986384-76986403	Msa0376750:intron	30.0%
ATCATCATCATCATCATCAT+CGG	-	chr3_1:76986592-76986611	None:intergenic	30.0%
TTGATTATGAAGTGTGGATT+CGG	+	chr3_1:76986637-76986656	Msa0376750:CDS	30.0%
GAAATTTGGAGAAAAGAATG+AGG	+	chr3_1:76986904-76986923	Msa0376750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	76985842	76990624	76985842	ID=Msa0376750;Name=Msa0376750
chr3_1	mRNA	76985842	76990624	76985842	ID=Msa0376750-mRNA-1;Parent=Msa0376750;Name=Msa0376750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=288\|1\|1\|1\|0.85\|0.75\|8\|1162\|705
chr3_1	exon	76985842	76986010	76985842	ID=Msa0376750-mRNA-1:exon:18338;Parent=Msa0376750-mRNA-1
chr3_1	exon	76986391	76987610	76986391	ID=Msa0376750-mRNA-1:exon:18339;Parent=Msa0376750-mRNA-1
chr3_1	exon	76987707	76987797	76987707	ID=Msa0376750-mRNA-1:exon:18340;Parent=Msa0376750-mRNA-1
chr3_1	exon	76987912	76988069	76987912	ID=Msa0376750-mRNA-1:exon:18341;Parent=Msa0376750-mRNA-1
chr3_1	exon	76988160	76988211	76988160	ID=Msa0376750-mRNA-1:exon:18342;Parent=Msa0376750-mRNA-1
chr3_1	exon	76988508	76988587	76988508	ID=Msa0376750-mRNA-1:exon:18343;Parent=Msa0376750-mRNA-1
chr3_1	exon	76988686	76988779	76988686	ID=Msa0376750-mRNA-1:exon:18344;Parent=Msa0376750-mRNA-1
chr3_1	exon	76988921	76990624	76988921	ID=Msa0376750-mRNA-1:exon:18345;Parent=Msa0376750-mRNA-1
chr3_1	five_prime_UTR	76985842	76986010	76985842	ID=Msa0376750-mRNA-1:five_prime_utr;Parent=Msa0376750-mRNA-1
chr3_1	five_prime_UTR	76986391	76986509	76986391	ID=Msa0376750-mRNA-1:five_prime_utr;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76986510	76987610	76986510	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76987707	76987797	76987707	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76987912	76988069	76987912	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76988160	76988211	76988160	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76988508	76988587	76988508	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76988686	76988779	76988686	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	CDS	76988921	76989462	76988921	ID=Msa0376750-mRNA-1:cds;Parent=Msa0376750-mRNA-1
chr3_1	three_prime_UTR	76989463	76990624	76989463	ID=Msa0376750-mRNA-1:three_prime_utr;Parent=Msa0376750-mRNA-1

Gene Sequence

>Msa0376750

ATGGGTAGTTTCAGTGGAGAAGAAGATTGTCGGTTTTTTGATGCTGAAGAGGATGTTGTGTCTATTAGGGATGTAAATTCCGATGATGATGATGATGATGATAAAGGGGTGTCTGTGTCTGTTGATTTTGATTATGAAGTGTGGATTCGGAGTCCAAAGAGTGTGAGAGAGCGTAGGGGGAGGTTTATGAAGAGCATGGGAATGAGTGTAGATGAAATTGTAGTTGAAAATTCATTGTATTTTGAGAAGGAAAAGATTATGGAAAGAAGAAGAGATAGTAGTGGTTCTGAAGAGGAATTTAGTTCATGTCGGCTGCCAATGTCTTGTTGCTCTAGTGTGAGTTCTTCGGAGGAATTTGGTTTAGTGGATATTAATAACTTGCCATCTCAAGATGGAAATTTGGAGAAAAGAATGAGGGATAATGAGAAGATGAGTGATTGTTCAAATCAGTTGGTAGTTGCTAAGGAATCTGAGGATTGTGTAAATGTCTCTGGGGTGTCTCATTGTCAAGGATTGATAGATAGAGAGTTTGAGGATGCAGATGGTGATGTGGTTACTAGAACGGTAAATAGGGCGAGAAGGGGTTGGTTGAGAAGATTGAGATCGATGACGTGCGTGGTTGATAATGATAGAGAAGAAGGGAGCTATGCAGTCTCAGGGTGTAGGCTTCAGAAAGTAAAGGTCCGTCAATGTAGGAAGAAAATGAAGGAACTTTCATCGCTTTACTTGAGGCAAGATATCCAAGCGCATGAAGGTGCAATTTTGACCATGAAATTTAGTCCTGATGGGCAGTATCTGGCTACAGGTGGTGAAGATGGGGTTGTTCGGGTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTCACATTCCTGAAATTGACCCCTCAAGCATTTACTTTACAGTGAATAATCTCTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTGGTCAACCGAAGAGCATGAGAAAGACCGCAGATTCAGCTTGTGTTGTTTTCCCGCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAGTTCCGTGGGCATAGAAGTGAAGTTTTGGATCTCTCTTGGTCAAAGAAGAATTATCTTCTTTCATCATCAGCTGACAAAACTGTCCGACTATGGCAAGTGAATCGTGACCATTGCTTGGAAGTGTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCTGTTGATGAAGATTATTTCATTAGTGGATCCATAGACGGAAAGGTGCGCATCTGGACGATACCCGATTCTCAGGTTGTTGATTGGACTGATGTCAGAGACATAGTGACTGCAGTATGTTATCGACCGGATGGGCAGGGAGGGATTGTTGGATCTTTAGAAGGAAATTGTTGGTTTTATAAAATATCAGATAATCACTTGCAGCTGGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCTCAAGATTCCAAGAAAGTTATGGTTACATGTGCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTTAACACAGGCAGTCCAATGTGTGCATCATTTACCTCAGACGGGAAACATATTTTATCAGCATGCGAGGACTCTAATGTATATCTATGGAACGTTAATCAGGAAGAGTCTAATAACCCCATGAAATCTAAGAAAGTTAGGTCTTGTGAGCGGTTTTCCTCAAACGCATCAGTTGCGGTACCTTGGCACGGTTTGAAACCTCCAATCTCCGAAAATGAACAATTGAATGTCTTGAATAAAAAGTCACCACAAGTTGTTATGCAATTACACCCCAACCCACCTGCTTCTTTCTCTCTGAACCAAGATTTTTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACCTGGCCCGAGGAGAAGCTTCCTGTTTCGGGCTCCAAGACCAAAAAAACATCATTGCTGCGAAAGTCGGAATACAAATTCTTGAAATCTTCATGTAAGAGTACCAACAATGCTCATGCGTGGGGTATGGTCATTGTGACTGCAGGCTGGGACGGGAAGATAAAAACATTCCAAAATTACGGGCTACCTGTACCCGTTTGA

Protein sequence

>Msa0376750

MGSFSGEEDCRFFDAEEDVVSIRDVNSDDDDDDDKGVSVSVDFDYEVWIRSPKSVRERRGRFMKSMGMSVDEIVVENSLYFEKEKIMERRRDSSGSEEEFSSCRLPMSCCSSVSSSEEFGLVDINNLPSQDGNLEKRMRDNEKMSDCSNQLVVAKESEDCVNVSGVSHCQGLIDREFEDADGDVVTRTVNRARRGWLRRLRSMTCVVDNDREEGSYAVSGCRLQKVKVRQCRKKMKELSSLYLRQDIQAHEGAILTMKFSPDGQYLATGGEDGVVRVWQVVEEDRCNEIHIPEIDPSSIYFTVNNLSQLTPLFMDKEKLGQPKSMRKTADSACVVFPPKIFRLLEKPLHEFRGHRSEVLDLSWSKKNYLLSSSADKTVRLWQVNRDHCLEVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWTIPDSQVVDWTDVRDIVTAVCYRPDGQGGIVGSLEGNCWFYKISDNHLQLDSQLCLIGKKKLPGRGITGFQFLPQDSKKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNVNQEESNNPMKSKKVRSCERFSSNASVAVPWHGLKPPISENEQLNVLNKKSPQVVMQLHPNPPASFSLNQDFFLESFPKGSATWPEEKLPVSGSKTKKTSLLRKSEYKFLKSSCKSTNNAHAWGMVIVTAGWDGKIKTFQNYGLPVPV*