AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0237200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 262 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTACTTCCAAGGTTAATT+TGG 0.111458 2_2:+10280544 Msa0237200:three_prime_UTR
CCGTTAGGTTTGAATATTTC+AGG 0.147372 2_2:+10279127 Msa0237200:three_prime_UTR
AGATTAAAACTAGCACTATT+TGG 0.183352 2_2:+10281489 Msa0237200:three_prime_UTR
TCAAGAATTGGGATATTAAA+TGG 0.205351 2_2:+10280198 Msa0237200:three_prime_UTR
ATCCACGGAAGGGTGAAATT+TGG 0.210229 2_2:+10281002 Msa0237200:three_prime_UTR
TTAATCTGACCATAGTATTT+TGG 0.222364 2_2:-10280755 None:intergenic
TGAAATTTGGGGATTGTATA+GGG 0.227079 2_2:+10281015 Msa0237200:three_prime_UTR
CCAACTCAGCAGGGGCTTAA+TGG 0.229078 2_2:+10279066 Msa0237200:three_prime_UTR
TCCCATCTAATAACTTTCTT+AGG 0.239915 2_2:-10280842 None:intergenic
GATCAGAATGGTTTGGCTTC+TGG 0.249018 2_2:+10279639 Msa0237200:three_prime_UTR
CTTATGATGATACTCTTTCT+TGG 0.250770 2_2:-10279340 None:intergenic
AAAGAGGAATGTTTCGCTTC+TGG 0.254433 2_2:+10279882 Msa0237200:three_prime_UTR
GCAGAAATCTGAGAGGCTTC+TGG 0.266113 2_2:+10281278 Msa0237200:three_prime_UTR
AGCAATATCCTTGGCCCTTA+AGG 0.267509 2_2:-10278545 None:intergenic
TCCACGGAAGGGTGAAATTT+GGG 0.269923 2_2:+10281003 Msa0237200:three_prime_UTR
GAACTTGAACACTGCTTGTT+TGG 0.281217 2_2:+10276646 Msa0237200:CDS
GATTACTCTTCCTGATGATT+TGG 0.287879 2_2:+10280508 Msa0237200:three_prime_UTR
GTGAAATTTGGGGATTGTAT+AGG 0.292252 2_2:+10281014 Msa0237200:three_prime_UTR
ATTATCTCAGCAAGGAATAA+TGG 0.293308 2_2:+10281329 Msa0237200:three_prime_UTR
CATCCACTCCAAACCCTTCC+AGG 0.296798 2_2:+10276321 Msa0237200:CDS
ATTATTCCTTGCTGAGATAA+TGG 0.300567 2_2:-10281327 None:intergenic
GATTCGGAGTATTGTTCTTC+TGG 0.300900 2_2:-10279263 None:intergenic
CTGCGCTCCTCTTCGTCATC+TGG 0.301755 2_2:-10280017 None:intergenic
AATTCAACTCGGCAAGCTTT+TGG 0.307178 2_2:+10279240 Msa0237200:three_prime_UTR
GGAAGCTCAAAGAGTTCTTT+TGG 0.311227 2_2:+10278864 Msa0237200:three_prime_UTR
AGTTTGAGGCGGGCCAGATT+TGG 0.314911 2_2:+10280705 Msa0237200:three_prime_UTR
AAATATAGATGTGAAAATTA+AGG 0.320750 2_2:+10279725 Msa0237200:three_prime_UTR
TAATTTATCTTACTGATTGC+TGG 0.321072 2_2:+10280816 Msa0237200:three_prime_UTR
GTTTCGCTTCTGGGCAGATA+TGG 0.321667 2_2:+10279892 Msa0237200:three_prime_UTR
TTGGGATATTAAATGGTATA+TGG 0.323572 2_2:+10280205 Msa0237200:three_prime_UTR
GGATATTGCTGAAAAGAAAA+TGG 0.333749 2_2:+10278558 Msa0237200:three_prime_UTR
GAATGGTTTGGCTTCTGGTC+TGG 0.339378 2_2:+10279644 Msa0237200:three_prime_UTR
TACCTAAGAAAGTTATTAGA+TGG 0.342918 2_2:+10280840 Msa0237200:three_prime_UTR
AAGAGGAATGTTTCGCTTCT+GGG 0.343632 2_2:+10279883 Msa0237200:three_prime_UTR
ATCTGAATGATTTGTTGATT+TGG 0.354595 2_2:-10279811 None:intergenic
ACCAACACAACCTCTTTAAC+AGG 0.355928 2_2:-10281577 None:intergenic
CAGAATGATAGTGGCAATAT+AGG 0.356181 2_2:+10276184 Msa0237200:CDS
TTGATCAAAGCATAGAATCT+AGG 0.361416 2_2:-10279942 None:intergenic
CTCTGCTGAGCAGAAATTAC+TGG 0.362025 2_2:+10278687 Msa0237200:three_prime_UTR
ACAGTCCTCGCATTCAGATT+TGG 0.362364 2_2:-10278418 None:intergenic
GAAGCTGCATTTAAGCTGAT+TGG 0.364130 2_2:+10278841 Msa0237200:three_prime_UTR
ATCTCATCAGAAGTATGATT+TGG 0.365143 2_2:+10280235 Msa0237200:three_prime_UTR
TTCCTCTTTCTCTTTCCATC+TGG 0.368177 2_2:-10279393 None:intergenic
AGGATTTATGTTTGGGAAAA+CGG 0.372107 2_2:-10279016 None:intergenic
GTCACTTCCATTCTCCTTGT+AGG 0.372842 2_2:-10279565 None:intergenic
CTCACGGAAACCTTCAAAAC+AGG 0.373315 2_2:+10279596 Msa0237200:three_prime_UTR
GTTTGAGGCGGGCCAGATTT+GGG 0.373748 2_2:+10280706 Msa0237200:three_prime_UTR
AATAGATGGCATGGCAGGTT+TGG 0.375145 2_2:-10278938 None:intergenic
TGCTGTCATAACTCATAATC+AGG 0.376227 2_2:+10278481 Msa0237200:three_prime_UTR
AGAGGAGCGCAGGTGGGTTA+AGG 0.376360 2_2:+10280028 Msa0237200:three_prime_UTR
GAACATTGGTTGATCTTTAG+TGG 0.377445 2_2:-10280099 None:intergenic
TCTTCCATCGGCAAGGATAT+AGG 0.378977 2_2:-10280485 None:intergenic
GATTAAAACTAGCACTATTT+GGG 0.379481 2_2:+10281490 Msa0237200:three_prime_UTR
AAGCTGCATTTAAGCTGATT+GGG 0.381476 2_2:+10278842 Msa0237200:three_prime_UTR
TTGTTATTAGTAGTACTCTT+AGG 0.381705 2_2:-10276217 None:intergenic
TGAACGAACCTGGAAGGGTT+TGG 0.382004 2_2:-10276329 None:intergenic
CCATTAAGCCCCTGCTGAGT+TGG 0.382613 2_2:-10279066 None:intergenic
GTCTAAGAAGCCAACTCAGC+AGG 0.385465 2_2:+10279056 Msa0237200:three_prime_UTR
CACCATAAAATGCCCAAATC+TGG 0.388005 2_2:-10280718 None:intergenic
GCAATAAAGAAGAGGCCTTA+AGG 0.393138 2_2:+10278530 Msa0237200:three_prime_UTR
TGCCGAGTTGAATTAGTTGC+CGG 0.394141 2_2:-10279231 None:intergenic
TCCTCTTCGTCATCTGGATC+TGG 0.395746 2_2:-10280011 None:intergenic
CAGAAATCTGAGAGGCTTCT+GGG 0.401330 2_2:+10281279 Msa0237200:three_prime_UTR
GACGAACTTCCAAAATACTA+TGG 0.401455 2_2:+10280746 Msa0237200:three_prime_UTR
GGATTTATGTTTGGGAAAAC+GGG 0.403433 2_2:-10279015 None:intergenic
TGTTGAGGAGGATTTATGTT+TGG 0.407863 2_2:-10279024 None:intergenic
TCAGAAACTATATCCTGATT+TGG 0.408301 2_2:+10278624 Msa0237200:three_prime_UTR
CATAACTCATAATCAGGCTT+TGG 0.409499 2_2:+10278487 Msa0237200:three_prime_UTR
AGAAAGAAAACGTGCTTGTA+AGG 0.409928 2_2:-10276279 None:intergenic
CAATAAAGAAGAGGCCTTAA+GGG 0.410268 2_2:+10278531 Msa0237200:three_prime_UTR
TATAGACTCGGAACTTTCAC+TGG 0.413142 2_2:-10279430 None:intergenic
AGGGAGCAGCATTTGCTAAC+CGG 0.415051 2_2:+10281413 Msa0237200:three_prime_UTR
TGAGCGATATTCTCCAAATC+AGG 0.418029 2_2:-10278637 None:intergenic
TGTTAGAGCTCCATCAGTTT+CGG 0.419365 2_2:+10280616 Msa0237200:three_prime_UTR
GGCTCGTACATTTGCACATA+AGG 0.419479 2_2:+10278600 Msa0237200:three_prime_UTR
TTATCTCAGCAAGGAATAAT+GGG 0.423675 2_2:+10281330 Msa0237200:three_prime_UTR
GGAGGGGACTTATGCATTGT+TGG 0.425957 2_2:+10278448 Msa0237200:three_prime_UTR
GATTTAAGTTGCAGATAACT+TGG 0.429434 2_2:+10279982 Msa0237200:three_prime_UTR
GTAAGTTGTACAGAAATTGC+AGG 0.429808 2_2:+10278391 Msa0237200:intron
GCAAGGAATAATGGGTAAGT+TGG 0.433726 2_2:+10281338 Msa0237200:three_prime_UTR
TTCAGCATCAAATTGATTGA+AGG 0.433817 2_2:-10280669 None:intergenic
TTTAAAGTGTATCCTAGAAA+AGG 0.438839 2_2:+10280158 Msa0237200:three_prime_UTR
GGGAGTATTTGTTTCATACT+TGG 0.438908 2_2:+10280295 Msa0237200:three_prime_UTR
TTGAAAATGCAGAATGATAG+TGG 0.440619 2_2:+10276175 None:intergenic
ATTAAATGCGTTCGGAGGAT+TGG 0.441380 2_2:+10280773 Msa0237200:three_prime_UTR
CGGACATTAGTTTGCATCAC+AGG 0.441445 2_2:-10278991 None:intergenic
GTTGAGGAGGATTTATGTTT+GGG 0.442059 2_2:-10279023 None:intergenic
AGTTGTTCAGATTCTCTCAC+AGG 0.449518 2_2:+10280396 Msa0237200:three_prime_UTR
TCGAGTTCAAAGGCTCCTAC+AGG 0.450890 2_2:-10280461 None:intergenic
AATTTATCTTACTGATTGCT+GGG 0.453279 2_2:+10280817 Msa0237200:three_prime_UTR
CATTCTCCTTGTAGGAAACC+TGG 0.454097 2_2:-10279557 None:intergenic
TTTCGCTTCTGGGCAGATAT+GGG 0.454800 2_2:+10279893 Msa0237200:three_prime_UTR
TCCTTCAGTTCCAAATCATC+AGG 0.456260 2_2:-10280518 None:intergenic
GTTCTACCTGCCTGTTAAAG+AGG 0.456691 2_2:+10281567 Msa0237200:three_prime_UTR
CACCAATTCTGTTTCACATC+AGG 0.457196 2_2:+10280937 Msa0237200:three_prime_UTR
CAAATGAACTGTAATTATGC+AGG 0.458818 2_2:-10281526 None:intergenic
TCCTGATGATTTGGAACTGA+AGG 0.462015 2_2:+10280517 Msa0237200:three_prime_UTR
TAGTGCTAAACTGTTTAGCC+AGG 0.464920 2_2:+10281393 Msa0237200:three_prime_UTR
AATGAATGATCAGAATGGTT+TGG 0.466017 2_2:+10279632 Msa0237200:three_prime_UTR
TTAGACTGCTGTTGCTGTTG+AGG 0.468443 2_2:-10279039 None:intergenic
ATCCTAGAAAAGGAGAAACT+TGG 0.468645 2_2:+10280168 Msa0237200:three_prime_UTR
AATTGATTGAAGGAAGGGTC+TGG 0.472960 2_2:-10280659 None:intergenic
TTTGGGGATTGTATAGGGGA+TGG 0.477728 2_2:+10281020 Msa0237200:three_prime_UTR
TCCGAATCACGGTGCTCCTA+AGG 0.479436 2_2:+10279278 Msa0237200:three_prime_UTR
GTTTCTTAATTATTCCATCA+TGG 0.479714 2_2:-10278762 None:intergenic
ACCTTAGGAGCACCGTGATT+CGG 0.481672 2_2:-10279279 None:intergenic
CAAGGAATAATGGGTAAGTT+GGG 0.485033 2_2:+10281339 Msa0237200:three_prime_UTR
ATGGTCAGATTAAATGCGTT+CGG 0.485378 2_2:+10280765 Msa0237200:three_prime_UTR
AGTTATTAGATGGGAAGATA+AGG 0.488752 2_2:+10280850 Msa0237200:three_prime_UTR
AGATGTGAAAATTAAGGAGG+TGG 0.492209 2_2:+10279731 Msa0237200:three_prime_UTR
AGTGAAAGTTCCGAGTCTAT+AGG 0.493626 2_2:+10279432 Msa0237200:three_prime_UTR
AAAGAGTATCATCATAAGAA+AGG 0.494543 2_2:+10279345 Msa0237200:three_prime_UTR
GATGAGAGAAGAATCGAAGA+AGG 0.494568 2_2:-10276302 None:intergenic
TCATCGTATACTTTATGAAA+AGG 0.495949 2_2:+10280124 Msa0237200:three_prime_UTR
AACAGAATTGGTGTTGTTGT+AGG 0.497331 2_2:-10280927 None:intergenic
GCCTGTTAAAGAGGTTGTGT+TGG 0.500583 2_2:+10281576 Msa0237200:three_prime_UTR
CTTCCGTCAGTTTGAAAGCA+GGG 0.503543 2_2:-10281249 None:intergenic
GTTATCTGCAACTTAAATCC+AGG 0.504899 2_2:-10279978 None:intergenic
CTTTGGAATTTAGACTTCGA+TGG 0.506540 2_2:+10278504 Msa0237200:three_prime_UTR
CACCTGATGTGAAACAGAAT+TGG 0.506845 2_2:-10280939 None:intergenic
AACGGGCAGCTCAAAGATAG+AGG 0.509577 2_2:+10279767 Msa0237200:three_prime_UTR
ACCCACCTCATATGCAATGA+AGG 0.510885 2_2:-10279193 None:intergenic
TCATACTTGGCTAAGTTGAA+AGG 0.511550 2_2:+10280308 Msa0237200:three_prime_UTR
AAGCAACTCAGTAGAGGAGA+AGG 0.512454 2_2:+10280571 Msa0237200:three_prime_UTR
CGTTAGGTTTGAATATTTCA+GGG 0.514181 2_2:+10279128 Msa0237200:three_prime_UTR
AGCCAGATGGAAAGAGAAAG+AGG 0.514187 2_2:+10279391 Msa0237200:three_prime_UTR
TTCAAGGGTAAATTAAGTAA+CGG 0.514783 2_2:+10281166 Msa0237200:three_prime_UTR
AAGTCATTGAACTCTGGATC+GGG 0.516861 2_2:-10279846 None:intergenic
TCTCGAATTACGAAGGGAGG+TGG 0.517185 2_2:+10280347 Msa0237200:three_prime_UTR
GACTGCTGTTGCTGTTGAGG+AGG 0.518186 2_2:-10279036 None:intergenic
AGGCTTCTGGGAACTTGATC+CGG 0.521662 2_2:+10281291 Msa0237200:three_prime_UTR
TGATATTTCCCACAAGCACT+TGG 0.523248 2_2:-10280059 None:intergenic
TAAGCCCTTCATTGCATATG+AGG 0.523474 2_2:+10279188 Msa0237200:three_prime_UTR
GAGAAACTGCCAAGTGCTTG+TGG 0.524452 2_2:+10280050 Msa0237200:three_prime_UTR
TTATTTCTGGAGAAGGTAAG+TGG 0.525653 2_2:+10281130 Msa0237200:three_prime_UTR
GTGGGAGGAAAAGAAACAAC+GGG 0.525910 2_2:+10279750 Msa0237200:three_prime_UTR
GGGTCCACAGAGTACAAAAC+CGG 0.526787 2_2:+10279212 Msa0237200:three_prime_UTR
TCGGATTATGTTGAAGGCGC+GGG 0.527387 2_2:+10280275 Msa0237200:three_prime_UTR
TGAGATCCAACACCAACCTT+AGG 0.527546 2_2:-10279294 None:intergenic
CAGGTTTCCTACAAGGAGAA+TGG 0.529926 2_2:+10279558 Msa0237200:three_prime_UTR
TCTCTAGAAGTAGAAACGCC+AGG 0.530087 2_2:-10279501 None:intergenic
TCAATCAATTTGATGCTGAA+AGG 0.532462 2_2:+10280672 Msa0237200:three_prime_UTR
ATCACAGGATTAAAGTTCAC+CGG 0.534280 2_2:-10278976 None:intergenic
CCACGGAAGGGTGAAATTTG+GGG 0.534533 2_2:+10281004 Msa0237200:three_prime_UTR
AAGGTTGGTGTTGGATCTCA+AGG 0.536385 2_2:+10279297 Msa0237200:three_prime_UTR
GGTGCTCCTAAGGTTGGTGT+TGG 0.537663 2_2:+10279288 Msa0237200:three_prime_UTR
GCTTCTTTCCAAATTAACCT+TGG 0.537905 2_2:-10280552 None:intergenic
TCTTCCGTCAGTTTGAAAGC+AGG 0.538427 2_2:-10281250 None:intergenic
TTGTCAAAGTCATTGAACTC+TGG 0.538570 2_2:-10279852 None:intergenic
TCCTAGAAAAGGAGAAACTT+GGG 0.540925 2_2:+10280169 Msa0237200:three_prime_UTR
ATGGAGAGCAAAGATTTCAC+AGG 0.541304 2_2:+10278577 Msa0237200:three_prime_UTR
GATGTGAAAATTAAGGAGGT+GGG 0.541319 2_2:+10279732 Msa0237200:three_prime_UTR
AGATTTGAACGAACCTGGAA+GGG 0.542798 2_2:-10276334 None:intergenic
TCCCATGAAAAGTTTGAGGC+GGG 0.542823 2_2:+10280695 Msa0237200:three_prime_UTR
GAAATTTGGGGATTGTATAG+GGG 0.543940 2_2:+10281016 Msa0237200:three_prime_UTR
GCATCAAATTGATTGAAGGA+AGG 0.544407 2_2:-10280665 None:intergenic
GAGATTTGAACGAACCTGGA+AGG 0.546742 2_2:-10276335 None:intergenic
CATCAAATTGATTGAAGGAA+GGG 0.546925 2_2:-10280664 None:intergenic
AAATGAACTGTAATTATGCA+GGG 0.547127 2_2:-10281525 None:intergenic
CTGTGATGCAAACTAATGTC+CGG 0.547207 2_2:+10278992 Msa0237200:three_prime_UTR
TAATGGTGTGGTACTGCTGC+CGG 0.550049 2_2:-10281310 None:intergenic
AAAGTCATTGAACTCTGGAT+CGG 0.550894 2_2:-10279847 None:intergenic
TGGTGGATTTGTATAGAAGA+AGG 0.553468 2_2:+10276674 Msa0237200:CDS
CGATCCTATATCCTTGCCGA+TGG 0.555561 2_2:+10280481 Msa0237200:three_prime_UTR
CAGCAGGGGCTTAATGGCAG+TGG 0.555761 2_2:+10279072 Msa0237200:three_prime_UTR
ACCTAAGAAAGTTATTAGAT+GGG 0.557163 2_2:+10280841 Msa0237200:three_prime_UTR
CTTTGACAAGGACAAGAAAG+AGG 0.557198 2_2:+10279866 Msa0237200:three_prime_UTR
GGTTAGCAAATGCTGCTCCC+TGG 0.559020 2_2:-10281411 None:intergenic
TCTAAGAAGCCAACTCAGCA+GGG 0.559454 2_2:+10279057 Msa0237200:three_prime_UTR
ATTGATCGCAATGACCATGA+TGG 0.559804 2_2:+10278748 Msa0237200:three_prime_UTR
AAAACACCAGGTTTCCTACA+AGG 0.560797 2_2:+10279551 Msa0237200:three_prime_UTR
GCCCTTCATTGCATATGAGG+TGG 0.561607 2_2:+10279191 Msa0237200:three_prime_UTR
GAGAATCTGAACAACTCAGC+TGG 0.561764 2_2:-10280389 None:intergenic
AGAAACTGCCAAGTGCTTGT+GGG 0.563507 2_2:+10280051 Msa0237200:three_prime_UTR
AATGTCTCTGTAAAGCCAGA+TGG 0.563630 2_2:+10279378 Msa0237200:three_prime_UTR
AAAGATAGAGGAAGCTTCAG+AGG 0.566259 2_2:+10279779 Msa0237200:three_prime_UTR
CCCCAAATTTCACCCTTCCG+TGG 0.567235 2_2:-10281004 None:intergenic
GATTCTGCAACCGAAACTGA+TGG 0.568717 2_2:-10280626 None:intergenic
AGTTGCTCAGATTCTCTCAC+AGG 0.572226 2_2:+10281224 Msa0237200:three_prime_UTR
GTCGGATTATGTTGAAGGCG+CGG 0.572346 2_2:+10280274 Msa0237200:three_prime_UTR
ATATGAAATTTATCCACGGA+AGG 0.572612 2_2:+10280991 Msa0237200:three_prime_UTR
CCTTCGTAATTCGAGAGAAG+AGG 0.575376 2_2:-10280340 None:intergenic
AGCGTCCACGTAGATCTTCA+CGG 0.576823 2_2:+10279526 Msa0237200:three_prime_UTR
GTTGTTCAGATTCTCTCACA+GGG 0.577108 2_2:+10280397 Msa0237200:three_prime_UTR
ATGACGAAGAGGAGCGCAGG+TGG 0.577366 2_2:+10280021 Msa0237200:three_prime_UTR
CCCTTCATTGCATATGAGGT+GGG 0.577708 2_2:+10279192 Msa0237200:three_prime_UTR
CCTGAAATATTCAAACCTAA+CGG 0.578272 2_2:-10279127 None:intergenic
AGTGCTAAACTGTTTAGCCA+GGG 0.584913 2_2:+10281394 Msa0237200:three_prime_UTR
CAGATGACGAAGAGGAGCGC+AGG 0.586014 2_2:+10280018 Msa0237200:three_prime_UTR
ACACAACCTCTTTAACAGGC+AGG 0.587781 2_2:-10281573 None:intergenic
ACTGAAATGAATGATCAGAA+TGG 0.588501 2_2:+10279627 Msa0237200:three_prime_UTR
TTATGTTTGGGAAAACGGGC+CGG 0.588548 2_2:-10279011 None:intergenic
GCCAGATCCAGATGACGAAG+AGG 0.590540 2_2:+10280010 Msa0237200:three_prime_UTR
GGATATAGGATCGAGTTCAA+AGG 0.591968 2_2:-10280471 None:intergenic
ATCAGTGCTGCCTATAGACT+CGG 0.593654 2_2:-10279442 None:intergenic
AGAAAACGTGCTTGTAAGGG+TGG 0.594734 2_2:-10276275 None:intergenic
TTACTGAAGATGCTGATATG+TGG 0.595321 2_2:+10281098 Msa0237200:three_prime_UTR
AGAAGAGGCCTTAAGGGCCA+AGG 0.596768 2_2:+10278537 Msa0237200:three_prime_UTR
CTCTTCTCTCGAATTACGAA+GGG 0.597804 2_2:+10280341 Msa0237200:three_prime_UTR
GAAACCTTCAAAACAGGGAA+AGG 0.598081 2_2:+10279602 Msa0237200:three_prime_UTR
GGAAAGAAGCAACTCAGTAG+AGG 0.598293 2_2:+10280565 Msa0237200:three_prime_UTR
ATGACTGGTCTGGAAAGAGC+AGG 0.598484 2_2:+10280434 Msa0237200:three_prime_UTR
TATAGATGTGAAAATTAAGG+AGG 0.599093 2_2:+10279728 Msa0237200:three_prime_UTR
AGCTGCATTTAAGCTGATTG+GGG 0.602250 2_2:+10278843 Msa0237200:three_prime_UTR
GAAAGAGCAGGCGTCCCTGT+AGG 0.602401 2_2:+10280446 Msa0237200:three_prime_UTR
TTCTCTCGAATTACGAAGGG+AGG 0.602519 2_2:+10280344 Msa0237200:three_prime_UTR
GAAGGATACATCTACTTCCA+AGG 0.604395 2_2:+10280535 Msa0237200:three_prime_UTR
AATCACGGTGCTCCTAAGGT+TGG 0.605145 2_2:+10279282 Msa0237200:three_prime_UTR
TCTGGAAGATGATCAGAAAG+AGG 0.605661 2_2:+10279662 Msa0237200:three_prime_UTR
GTCCCATGAAAAGTTTGAGG+CGG 0.608243 2_2:+10280694 Msa0237200:three_prime_UTR
GTGAGAGAATCTGAGCAACT+CGG 0.610716 2_2:-10281221 None:intergenic
GTAATACTAATGTGGTGGAC+TGG 0.611478 2_2:+10278710 Msa0237200:three_prime_UTR
CCCACCTCATATGCAATGAA+GGG 0.613211 2_2:-10279192 None:intergenic
CTCGAATTACGAAGGGAGGT+GGG 0.613918 2_2:+10280348 Msa0237200:three_prime_UTR
AGGAATATGAAATTTATCCA+CGG 0.614576 2_2:+10280987 Msa0237200:three_prime_UTR
GAAAGAAAACGTGCTTGTAA+GGG 0.614683 2_2:-10276278 None:intergenic
CTCGGTCCTATCGATAGTCA+TGG 0.615174 2_2:-10281203 None:intergenic
AAGGTCCCATGAAAAGTTTG+AGG 0.615424 2_2:+10280691 Msa0237200:three_prime_UTR
TCTGCTGAGCAGAAATTACT+GGG 0.615704 2_2:+10278688 Msa0237200:three_prime_UTR
AGTAATCTCTTCCATCGGCA+AGG 0.617474 2_2:-10280492 None:intergenic
AGCACTAATACAGTGAAACA+AGG 0.618210 2_2:-10281377 None:intergenic
TAGGTGCAGAGCTTACCACT+TGG 0.618861 2_2:-10280908 None:intergenic
GCTGTCCAAATCTGAATGCG+AGG 0.621383 2_2:+10278413 Msa0237200:three_prime_UTR
AATCTGAACAACTCAGCTGG+TGG 0.622075 2_2:-10280386 None:intergenic
GAAGTGACGACGATGACTCA+CGG 0.623679 2_2:+10279580 Msa0237200:three_prime_UTR
AAACTGTGAGTATGACATAG+TGG 0.623986 2_2:+10281072 Msa0237200:three_prime_UTR
TGGAGAGCAAAGATTTCACA+GGG 0.624124 2_2:+10278578 Msa0237200:three_prime_UTR
GCTTGTGGGAAATATCAACT+TGG 0.624831 2_2:+10280065 Msa0237200:three_prime_UTR
CCTCTTCTCTCGAATTACGA+AGG 0.625976 2_2:+10280340 Msa0237200:three_prime_UTR
ATTACTGGGTAATACTAATG+TGG 0.626275 2_2:+10278702 Msa0237200:three_prime_UTR
GTCAGATTAAATGCGTTCGG+AGG 0.627109 2_2:+10280768 Msa0237200:three_prime_UTR
TTCAAACTGACGGAAGAACA+TGG 0.627670 2_2:+10281256 Msa0237200:three_prime_UTR
AGATGACCATGACTATCGAT+AGG 0.630507 2_2:+10281197 Msa0237200:three_prime_UTR
AAGAACAATACTCCGAATCA+CGG 0.631389 2_2:+10279267 Msa0237200:three_prime_UTR
GATGGATTGCAATAAAGAAG+AGG 0.636257 2_2:+10278522 Msa0237200:three_prime_UTR
ACTGGGTAATACTAATGTGG+TGG 0.636662 2_2:+10278705 Msa0237200:three_prime_UTR
GTGAAAATTAAGGAGGTGGG+AGG 0.637325 2_2:+10279735 Msa0237200:three_prime_UTR
TATGAAATTTATCCACGGAA+GGG 0.639556 2_2:+10280992 Msa0237200:three_prime_UTR
CGAGTTCAAAGGCTCCTACA+GGG 0.645467 2_2:-10280460 None:intergenic
GATCCCTGCTTTCAAACTGA+CGG 0.646604 2_2:+10281246 Msa0237200:three_prime_UTR
ACCACACCATTATCTCAGCA+AGG 0.646629 2_2:+10281321 Msa0237200:three_prime_UTR
AGTATACGATGAGAGAACAT+TGG 0.647284 2_2:-10280113 None:intergenic
CTAAGAAGCCAACTCAGCAG+GGG 0.647584 2_2:+10279058 Msa0237200:three_prime_UTR
GGAAGAGTAATCTCTTCCAT+CGG 0.651816 2_2:-10280497 None:intergenic
AACCGGCAACTAATTCAACT+CGG 0.654528 2_2:+10279229 Msa0237200:three_prime_UTR
AAGGGTAAATTAAGTAACGG+AGG 0.655997 2_2:+10281169 Msa0237200:three_prime_UTR
GCTGTTTATGATGATACAGA+TGG 0.656316 2_2:+10279915 Msa0237200:three_prime_UTR
TGACGAAGAGGAGCGCAGGT+GGG 0.660160 2_2:+10280022 Msa0237200:three_prime_UTR
TAGTGCTGTTCGAAACAACA+AGG 0.661852 2_2:+10280967 Msa0237200:three_prime_UTR
GAACCTGGAAGGGTTTGGAG+TGG 0.664704 2_2:-10276324 None:intergenic
AAGGATATGATCATTTCCTG+TGG 0.671661 2_2:+10280869 Msa0237200:three_prime_UTR
GCAGGTAGAACAACAAACAC+AGG 0.673725 2_2:-10281555 None:intergenic
GGTGGGAGGAAAAGAAACAA+CGG 0.678584 2_2:+10279749 Msa0237200:three_prime_UTR
AGAGTTCAATGACTTTGACA+AGG 0.684191 2_2:+10279854 Msa0237200:three_prime_UTR
TCACGGAAACCTTCAAAACA+GGG 0.685759 2_2:+10279597 Msa0237200:three_prime_UTR
AATGAACTGTAATTATGCAG+GGG 0.687472 2_2:-10281524 None:intergenic
GATACACTTTAAAAGTAGAG+CGG 0.692073 2_2:-10280148 None:intergenic
AAGGTGATTTGTATGCTAAG+AGG 0.700453 2_2:+10279316 Msa0237200:three_prime_UTR
AGATTTAAAATCAATCCAAG+TGG 0.713999 2_2:+10280893 Msa0237200:three_prime_UTR
TCCTTGCTGAGATAATGGTG+TGG 0.715462 2_2:-10281322 None:intergenic
GAACATGGCAGAAATCTGAG+AGG 0.745585 2_2:+10281271 Msa0237200:three_prime_UTR
GGAGAGCAAAGATTTCACAG+GGG 0.834919 2_2:+10278579 Msa0237200:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAAAAAAAAAAACTTTT+AGG - chr2_2:10281454-10281473 None:intergenic 10.0%
!! ATTTGTAAGATACAAATTAT+AGG - chr2_2:10276443-10276462 None:intergenic 15.0%
!! TGTTAATTTCAGAATAAATT+AGG + chr2_2:10276581-10276600 Msa0237200:intron 15.0%
!! GTTAATTTCAGAATAAATTA+GGG + chr2_2:10276582-10276601 Msa0237200:intron 15.0%
!!! TTTAACTGTTAAGAATTTTT+AGG + chr2_2:10276797-10276816 Msa0237200:intron 15.0%
!! ATTTAATTCCTCAATTAAAA+AGG + chr2_2:10277108-10277127 Msa0237200:intron 15.0%
!! CTTGTTTATAAAATCTAAAT+TGG + chr2_2:10277354-10277373 Msa0237200:intron 15.0%
!!! AGAAAGATTAAAATTTTAGT+GGG + chr2_2:10277660-10277679 Msa0237200:intron 15.0%
!!! AATTTATTTCTTATTTGTGT+GGG - chr2_2:10278039-10278058 None:intergenic 15.0%
!!! AAATTTATTTCTTATTTGTG+TGG - chr2_2:10278040-10278059 None:intergenic 15.0%
!!! TTTTATATCTTATAAAAGGT+AGG - chr2_2:10278151-10278170 None:intergenic 15.0%
!! AAACATAAAGTTTATGAATA+AGG - chr2_2:10278300-10278319 None:intergenic 15.0%
!! AAATATAGATGTGAAAATTA+AGG + chr2_2:10279725-10279744 Msa0237200:three_prime_UTR 15.0%
!! AGTAAGAGTGAAAAATTAAA+CGG - chr2_2:10276390-10276409 None:intergenic 20.0%
!!! TAAAGGTAGTTTTTTTTGTA+TGG + chr2_2:10276522-10276541 Msa0237200:intron 20.0%
!!! AAAGGTAGTTTTTTTTGTAT+GGG + chr2_2:10276523-10276542 Msa0237200:intron 20.0%
!!! TTCAATTTTTTCTTTCTTTC+AGG + chr2_2:10276618-10276637 Msa0237200:intron 20.0%
!!! GTTATTTTAACTTATTACTG+TGG + chr2_2:10277376-10277395 Msa0237200:intron 20.0%
!! TTTCTCAATATATACACATA+GGG - chr2_2:10277645-10277664 None:intergenic 20.0%
!!! GAGAAAGATTAAAATTTTAG+TGG + chr2_2:10277659-10277678 Msa0237200:intron 20.0%
!!! GAAAGATTAAAATTTTAGTG+GGG + chr2_2:10277661-10277680 Msa0237200:intron 20.0%
!! CTAACTAAAAAATCAAATGA+AGG - chr2_2:10277759-10277778 None:intergenic 20.0%
!!! ATTTATTTCTTATTTGTGTG+GGG - chr2_2:10278038-10278057 None:intergenic 20.0%
!! AAATAAATTTCAGTGAAAAG+AGG + chr2_2:10278050-10278069 Msa0237200:intron 20.0%
!!! AGGAAGAAAATAGTTTATTT+TGG + chr2_2:10278070-10278089 Msa0237200:intron 20.0%
!! TTGTTATTAGTAGTACTCTT+AGG - chr2_2:10276220-10276239 None:intergenic 25.0%
! GTAAGAGTGAAAAATTAAAC+GGG - chr2_2:10276389-10276408 None:intergenic 25.0%
!! TTTCACTCTTACTGAATTTT+AGG + chr2_2:10276397-10276416 Msa0237200:intron 25.0%
!! TTCACTCTTACTGAATTTTA+GGG + chr2_2:10276398-10276417 Msa0237200:intron 25.0%
!!! CGTTTTTTCTTTAGTTGTAA+AGG + chr2_2:10276505-10276524 Msa0237200:intron 25.0%
!!! TTTTTCTTTCTTTCAGGTTT+CGG + chr2_2:10276624-10276643 Msa0237200:intron 25.0%
!!! AATGAATTTTTAGACTGTGT+TGG + chr2_2:10276733-10276752 Msa0237200:intron 25.0%
! TTGTGTTTATAGATTTGTGA+TGG + chr2_2:10276760-10276779 Msa0237200:intron 25.0%
!!! TGGATCTAGAAATTTTAAGT+AGG + chr2_2:10276850-10276869 Msa0237200:intron 25.0%
! GGTATCAATAGTACTTATAT+GGG + chr2_2:10276899-10276918 Msa0237200:intron 25.0%
! GTATCAATAGTACTTATATG+GGG + chr2_2:10276900-10276919 Msa0237200:intron 25.0%
! ACATATCAAATGATAGTAGT+GGG - chr2_2:10277621-10277640 None:intergenic 25.0%
! TTCTCAATATATACACATAG+GGG - chr2_2:10277644-10277663 None:intergenic 25.0%
! CTTTCTCAATATATACACAT+AGG - chr2_2:10277646-10277665 None:intergenic 25.0%
!! GAAAATCAATAGAAGTGTAA+GGG - chr2_2:10277990-10278009 None:intergenic 25.0%
!! AGAAAATCAATAGAAGTGTA+AGG - chr2_2:10277991-10278010 None:intergenic 25.0%
! TCAACCAAAAATTCTCAAAA+AGG - chr2_2:10278354-10278373 None:intergenic 25.0%
! GTTTCTTAATTATTCCATCA+TGG - chr2_2:10278765-10278784 None:intergenic 25.0%
!!! ATTTCAGGGTAGTTTTAAAT+AGG + chr2_2:10279142-10279161 Msa0237200:three_prime_UTR 25.0%
!!! AAAGAGTATCATCATAAGAA+AGG + chr2_2:10279345-10279364 Msa0237200:three_prime_UTR 25.0%
! TATAGATGTGAAAATTAAGG+AGG + chr2_2:10279728-10279747 Msa0237200:three_prime_UTR 25.0%
!!! ATCTGAATGATTTGTTGATT+TGG - chr2_2:10279814-10279833 None:intergenic 25.0%
!!! ATCAAAAAAGTTTTTTCTCC+TGG + chr2_2:10279960-10279979 Msa0237200:three_prime_UTR 25.0%
! TCATCGTATACTTTATGAAA+AGG + chr2_2:10280124-10280143 Msa0237200:three_prime_UTR 25.0%
!! TTTAAAGTGTATCCTAGAAA+AGG + chr2_2:10280158-10280177 Msa0237200:three_prime_UTR 25.0%
! TCAAGAATTGGGATATTAAA+TGG + chr2_2:10280198-10280217 Msa0237200:three_prime_UTR 25.0%
! TTGGGATATTAAATGGTATA+TGG + chr2_2:10280205-10280224 Msa0237200:three_prime_UTR 25.0%
!! TTAATCTGACCATAGTATTT+TGG - chr2_2:10280758-10280777 None:intergenic 25.0%
!! TTACTTGCAACTCAATTTTT+GGG - chr2_2:10280799-10280818 None:intergenic 25.0%
!! ATTACTTGCAACTCAATTTT+TGG - chr2_2:10280800-10280819 None:intergenic 25.0%
!! TAATTTATCTTACTGATTGC+TGG + chr2_2:10280816-10280835 Msa0237200:three_prime_UTR 25.0%
!! AATTTATCTTACTGATTGCT+GGG + chr2_2:10280817-10280836 Msa0237200:three_prime_UTR 25.0%
! TACCTAAGAAAGTTATTAGA+TGG + chr2_2:10280840-10280859 Msa0237200:three_prime_UTR 25.0%
! ACCTAAGAAAGTTATTAGAT+GGG + chr2_2:10280841-10280860 Msa0237200:three_prime_UTR 25.0%
!!! ATTGATTTTAAATCTTCCAC+AGG - chr2_2:10280888-10280907 None:intergenic 25.0%
!! AGATTTAAAATCAATCCAAG+TGG + chr2_2:10280893-10280912 Msa0237200:three_prime_UTR 25.0%
! AGGAATATGAAATTTATCCA+CGG + chr2_2:10280987-10281006 Msa0237200:three_prime_UTR 25.0%
! TTCAAGGGTAAATTAAGTAA+CGG + chr2_2:10281166-10281185 Msa0237200:three_prime_UTR 25.0%
! TAGGTTCAAAAAATGAAATC+CGG - chr2_2:10281435-10281454 None:intergenic 25.0%
! AGATTAAAACTAGCACTATT+TGG + chr2_2:10281489-10281508 Msa0237200:three_prime_UTR 25.0%
! GATTAAAACTAGCACTATTT+GGG + chr2_2:10281490-10281509 Msa0237200:three_prime_UTR 25.0%
! AAATGAACTGTAATTATGCA+GGG - chr2_2:10281528-10281547 None:intergenic 25.0%
! TTATAGATTTGTGATGGTGT+AGG + chr2_2:10276766-10276785 Msa0237200:intron 30.0%
TGTTGCATATATGTTGTAGT+TGG + chr2_2:10276877-10276896 Msa0237200:intron 30.0%
GTTGCATATATGTTGTAGTT+GGG + chr2_2:10276878-10276897 Msa0237200:intron 30.0%
GGGTATCAATAGTACTTATA+TGG + chr2_2:10276898-10276917 Msa0237200:intron 30.0%
TTGTTCATATGTGTGCTATA+CGG + chr2_2:10277043-10277062 Msa0237200:intron 30.0%
! TGAATCTAAAACCGCATATT+TGG - chr2_2:10277222-10277241 None:intergenic 30.0%
AAAAACAGAGAGACTTTAGA+AGG + chr2_2:10277421-10277440 Msa0237200:intron 30.0%
ATAGTAATCATGCAAAAGAG+AGG + chr2_2:10277491-10277510 Msa0237200:intron 30.0%
TAGTAATCATGCAAAAGAGA+GGG + chr2_2:10277492-10277511 Msa0237200:intron 30.0%
GACATATCAAATGATAGTAG+TGG - chr2_2:10277622-10277641 None:intergenic 30.0%
! AAAGTTTTGCCATAGAAAGT+GGG + chr2_2:10277779-10277798 Msa0237200:intron 30.0%
ATCGAAATACTTTGCTCAAT+AGG - chr2_2:10277894-10277913 None:intergenic 30.0%
TTTCAGATTATCAAACCTCT+AGG + chr2_2:10277917-10277936 Msa0237200:intron 30.0%
TTCAGATTATCAAACCTCTA+GGG + chr2_2:10277918-10277937 Msa0237200:intron 30.0%
TCTGTACTTTGTATCTTTGT+TGG + chr2_2:10278008-10278027 Msa0237200:intron 30.0%
TACTTTGTATCTTTGTTGGT+TGG + chr2_2:10278012-10278031 Msa0237200:intron 30.0%
TGAATTCATCAAACACAACA+AGG - chr2_2:10278123-10278142 None:intergenic 30.0%
! TTGTTGTGGATTTTCTGTTT+TGG + chr2_2:10278224-10278243 Msa0237200:intron 30.0%
CCAAAAATTCTCAAAAAGGA+TGG - chr2_2:10278350-10278369 None:intergenic 30.0%
!! CCATCCTTTTTGAGAATTTT+TGG + chr2_2:10278347-10278366 Msa0237200:intron 30.0%
!!! TTGAGAATTTTTGGTTGATG+TGG + chr2_2:10278356-10278375 Msa0237200:intron 30.0%
!!! TGAGAATTTTTGGTTGATGT+GGG + chr2_2:10278357-10278376 Msa0237200:intron 30.0%
! TTTCTTTTCAGCAATATCCT+TGG - chr2_2:10278557-10278576 None:intergenic 30.0%
GGATATTGCTGAAAAGAAAA+TGG + chr2_2:10278558-10278577 Msa0237200:three_prime_UTR 30.0%
TCAGAAACTATATCCTGATT+TGG + chr2_2:10278624-10278643 Msa0237200:three_prime_UTR 30.0%
ATTACTGGGTAATACTAATG+TGG + chr2_2:10278702-10278721 Msa0237200:three_prime_UTR 30.0%
AGGATTTATGTTTGGGAAAA+CGG - chr2_2:10279019-10279038 None:intergenic 30.0%
CCTGAAATATTCAAACCTAA+CGG - chr2_2:10279130-10279149 None:intergenic 30.0%
CGTTAGGTTTGAATATTTCA+GGG + chr2_2:10279128-10279147 Msa0237200:three_prime_UTR 30.0%
CTTATGATGATACTCTTTCT+TGG - chr2_2:10279343-10279362 None:intergenic 30.0%
! GATACATTTTCTGACAACAA+TGG + chr2_2:10279474-10279493 Msa0237200:three_prime_UTR 30.0%
ACTGAAATGAATGATCAGAA+TGG + chr2_2:10279627-10279646 Msa0237200:three_prime_UTR 30.0%
AATGAATGATCAGAATGGTT+TGG + chr2_2:10279632-10279651 Msa0237200:three_prime_UTR 30.0%
TTGATCAAAGCATAGAATCT+AGG - chr2_2:10279945-10279964 None:intergenic 30.0%
!! GATTTAAGTTGCAGATAACT+TGG + chr2_2:10279982-10280001 Msa0237200:three_prime_UTR 30.0%
! GATACACTTTAAAAGTAGAG+CGG - chr2_2:10280151-10280170 None:intergenic 30.0%
! ATCTCATCAGAAGTATGATT+TGG + chr2_2:10280235-10280254 Msa0237200:three_prime_UTR 30.0%
!!! GGAATTTGTTGAAGTTTTGT+CGG + chr2_2:10280256-10280275 Msa0237200:three_prime_UTR 30.0%
!!! GTTCCATCTTTTAAAATGAC+TGG + chr2_2:10280419-10280438 Msa0237200:three_prime_UTR 30.0%
!! AGACCAGTCATTTTAAAAGA+TGG - chr2_2:10280425-10280444 None:intergenic 30.0%
!!! ATCTTTTAAAATGACTGGTC+TGG + chr2_2:10280424-10280443 Msa0237200:three_prime_UTR 30.0%
ATCTACTTCCAAGGTTAATT+TGG + chr2_2:10280544-10280563 Msa0237200:three_prime_UTR 30.0%
CATCAAATTGATTGAAGGAA+GGG - chr2_2:10280667-10280686 None:intergenic 30.0%
TTCAGCATCAAATTGATTGA+AGG - chr2_2:10280672-10280691 None:intergenic 30.0%
TCAATCAATTTGATGCTGAA+AGG + chr2_2:10280672-10280691 Msa0237200:three_prime_UTR 30.0%
TCCCATCTAATAACTTTCTT+AGG - chr2_2:10280845-10280864 None:intergenic 30.0%
AGTTATTAGATGGGAAGATA+AGG + chr2_2:10280850-10280869 Msa0237200:three_prime_UTR 30.0%
ATATGAAATTTATCCACGGA+AGG + chr2_2:10280991-10281010 Msa0237200:three_prime_UTR 30.0%
TATGAAATTTATCCACGGAA+GGG + chr2_2:10280992-10281011 Msa0237200:three_prime_UTR 30.0%
TGAAATTTGGGGATTGTATA+GGG + chr2_2:10281015-10281034 Msa0237200:three_prime_UTR 30.0%
!!! AGATGTTTTATTTCTGGAGA+AGG + chr2_2:10281123-10281142 Msa0237200:three_prime_UTR 30.0%
ATTATTCCTTGCTGAGATAA+TGG - chr2_2:10281330-10281349 None:intergenic 30.0%
ATTATCTCAGCAAGGAATAA+TGG + chr2_2:10281329-10281348 Msa0237200:three_prime_UTR 30.0%
TTATCTCAGCAAGGAATAAT+GGG + chr2_2:10281330-10281349 Msa0237200:three_prime_UTR 30.0%
AATGAACTGTAATTATGCAG+GGG - chr2_2:10281527-10281546 None:intergenic 30.0%
CAAATGAACTGTAATTATGC+AGG - chr2_2:10281529-10281548 None:intergenic 30.0%
!! CAGAATGATAGTGGCAATAT+AGG + chr2_2:10276184-10276203 Msa0237200:CDS 35.0%
GAAAGAAAACGTGCTTGTAA+GGG - chr2_2:10276281-10276300 None:intergenic 35.0%
AGAAAGAAAACGTGCTTGTA+AGG - chr2_2:10276282-10276301 None:intergenic 35.0%
AAAAGAGATTTGAACGAACC+TGG - chr2_2:10276342-10276361 None:intergenic 35.0%
TATTCCTCTTCAAATCAGAG+GGG - chr2_2:10276485-10276504 None:intergenic 35.0%
GTATTCCTCTTCAAATCAGA+GGG - chr2_2:10276486-10276505 None:intergenic 35.0%
!! TGGTGGATTTGTATAGAAGA+AGG + chr2_2:10276674-10276693 Msa0237200:CDS 35.0%
TGTTCATATGTGTGCTATAC+GGG + chr2_2:10277044-10277063 Msa0237200:intron 35.0%
TTATCACTCTCGTTGAATGT+CGG + chr2_2:10277155-10277174 Msa0237200:intron 35.0%
CACGTTCTTTACCAAATATG+CGG + chr2_2:10277208-10277227 Msa0237200:intron 35.0%
AAGAAGCAATTATGTAGCAG+TGG - chr2_2:10277306-10277325 None:intergenic 35.0%
AGTAATCATGCAAAAGAGAG+GGG + chr2_2:10277493-10277512 Msa0237200:intron 35.0%
GGTAACAGACAAAAGAAGAA+GGG + chr2_2:10277515-10277534 Msa0237200:intron 35.0%
! GAAAGTTTTGCCATAGAAAG+TGG + chr2_2:10277778-10277797 Msa0237200:intron 35.0%
TCAGATTATCAAACCTCTAG+GGG + chr2_2:10277919-10277938 Msa0237200:intron 35.0%
TACTTATCCAATTCCACATG+TGG + chr2_2:10278188-10278207 Msa0237200:intron 35.0%
GTAAGTTGTACAGAAATTGC+AGG + chr2_2:10278391-10278410 Msa0237200:intron 35.0%
! AATGCGAGGACTGTAATTTT+TGG + chr2_2:10278427-10278446 Msa0237200:three_prime_UTR 35.0%
TGCTGTCATAACTCATAATC+AGG + chr2_2:10278481-10278500 Msa0237200:three_prime_UTR 35.0%
CATAACTCATAATCAGGCTT+TGG + chr2_2:10278487-10278506 Msa0237200:three_prime_UTR 35.0%
!! CTTTGGAATTTAGACTTCGA+TGG + chr2_2:10278504-10278523 Msa0237200:three_prime_UTR 35.0%
!! GATGGATTGCAATAAAGAAG+AGG + chr2_2:10278522-10278541 Msa0237200:three_prime_UTR 35.0%
CAATAAAGAAGAGGCCTTAA+GGG + chr2_2:10278531-10278550 Msa0237200:three_prime_UTR 35.0%
!!! CAAACTTGTTTTTGTCAGGA+TGG - chr2_2:10278813-10278832 None:intergenic 35.0%
AAGCTGCATTTAAGCTGATT+GGG + chr2_2:10278842-10278861 Msa0237200:three_prime_UTR 35.0%
!! CCATGCCATCTATTTTTCAA+CGG + chr2_2:10278947-10278966 Msa0237200:three_prime_UTR 35.0%
ACGTTCCGTTGAAAAATAGA+TGG - chr2_2:10278955-10278974 None:intergenic 35.0%
!! TATTTTTCAACGGAACGTTC+CGG + chr2_2:10278957-10278976 Msa0237200:three_prime_UTR 35.0%
ATCACAGGATTAAAGTTCAC+CGG - chr2_2:10278979-10278998 None:intergenic 35.0%
GGATTTATGTTTGGGAAAAC+GGG - chr2_2:10279018-10279037 None:intergenic 35.0%
GTTGAGGAGGATTTATGTTT+GGG - chr2_2:10279026-10279045 None:intergenic 35.0%
TGTTGAGGAGGATTTATGTT+TGG - chr2_2:10279027-10279046 None:intergenic 35.0%
AGCACATAGTCCAAAAAGTA+GGG - chr2_2:10279098-10279117 None:intergenic 35.0%
CCGTTAGGTTTGAATATTTC+AGG + chr2_2:10279127-10279146 Msa0237200:three_prime_UTR 35.0%
AAGAACAATACTCCGAATCA+CGG + chr2_2:10279267-10279286 Msa0237200:three_prime_UTR 35.0%
! AAGGTGATTTGTATGCTAAG+AGG + chr2_2:10279316-10279335 Msa0237200:three_prime_UTR 35.0%
AGATGTGAAAATTAAGGAGG+TGG + chr2_2:10279731-10279750 Msa0237200:three_prime_UTR 35.0%
GATGTGAAAATTAAGGAGGT+GGG + chr2_2:10279732-10279751 Msa0237200:three_prime_UTR 35.0%
AAAGTCATTGAACTCTGGAT+CGG - chr2_2:10279850-10279869 None:intergenic 35.0%
TTGTCAAAGTCATTGAACTC+TGG - chr2_2:10279855-10279874 None:intergenic 35.0%
AGAGTTCAATGACTTTGACA+AGG + chr2_2:10279854-10279873 Msa0237200:three_prime_UTR 35.0%
GCTGTTTATGATGATACAGA+TGG + chr2_2:10279915-10279934 Msa0237200:three_prime_UTR 35.0%
GTTATCTGCAACTTAAATCC+AGG - chr2_2:10279981-10280000 None:intergenic 35.0%
! GAACATTGGTTGATCTTTAG+TGG - chr2_2:10280102-10280121 None:intergenic 35.0%
AGTATACGATGAGAGAACAT+TGG - chr2_2:10280116-10280135 None:intergenic 35.0%
ATCCTAGAAAAGGAGAAACT+TGG + chr2_2:10280168-10280187 Msa0237200:three_prime_UTR 35.0%
TCCTAGAAAAGGAGAAACTT+GGG + chr2_2:10280169-10280188 Msa0237200:three_prime_UTR 35.0%
!! TTGGGCTCTTTTCAAGAATT+GGG + chr2_2:10280187-10280206 Msa0237200:three_prime_UTR 35.0%
! GTTTTGTCGGATTATGTTGA+AGG + chr2_2:10280269-10280288 Msa0237200:three_prime_UTR 35.0%
!! GGGAGTATTTGTTTCATACT+TGG + chr2_2:10280295-10280314 Msa0237200:three_prime_UTR 35.0%
! TCATACTTGGCTAAGTTGAA+AGG + chr2_2:10280308-10280327 Msa0237200:three_prime_UTR 35.0%
GATTACTCTTCCTGATGATT+TGG + chr2_2:10280508-10280527 Msa0237200:three_prime_UTR 35.0%
GCTTCTTTCCAAATTAACCT+TGG - chr2_2:10280555-10280574 None:intergenic 35.0%
GCATCAAATTGATTGAAGGA+AGG - chr2_2:10280668-10280687 None:intergenic 35.0%
GACGAACTTCCAAAATACTA+TGG + chr2_2:10280746-10280765 Msa0237200:three_prime_UTR 35.0%
ATGGTCAGATTAAATGCGTT+CGG + chr2_2:10280765-10280784 Msa0237200:three_prime_UTR 35.0%
AAGGATATGATCATTTCCTG+TGG + chr2_2:10280869-10280888 Msa0237200:three_prime_UTR 35.0%
!! AACAGAATTGGTGTTGTTGT+AGG - chr2_2:10280930-10280949 None:intergenic 35.0%
GTGAAATTTGGGGATTGTAT+AGG + chr2_2:10281014-10281033 Msa0237200:three_prime_UTR 35.0%
GAAATTTGGGGATTGTATAG+GGG + chr2_2:10281016-10281035 Msa0237200:three_prime_UTR 35.0%
AAACTGTGAGTATGACATAG+TGG + chr2_2:10281072-10281091 Msa0237200:three_prime_UTR 35.0%
TTACTGAAGATGCTGATATG+TGG + chr2_2:10281098-10281117 Msa0237200:three_prime_UTR 35.0%
!!! GTGGACAGATGTTTTATTTC+TGG + chr2_2:10281117-10281136 Msa0237200:three_prime_UTR 35.0%
!! TTATTTCTGGAGAAGGTAAG+TGG + chr2_2:10281130-10281149 Msa0237200:three_prime_UTR 35.0%
! TGGTTACAGTTCAGTTTTCA+AGG + chr2_2:10281150-10281169 Msa0237200:three_prime_UTR 35.0%
! GGTTACAGTTCAGTTTTCAA+GGG + chr2_2:10281151-10281170 Msa0237200:three_prime_UTR 35.0%
AAGGGTAAATTAAGTAACGG+AGG + chr2_2:10281169-10281188 Msa0237200:three_prime_UTR 35.0%
!! CAAGGAATAATGGGTAAGTT+GGG + chr2_2:10281339-10281358 Msa0237200:three_prime_UTR 35.0%
AGCACTAATACAGTGAAACA+AGG - chr2_2:10281380-10281399 None:intergenic 35.0%
GATGAGAGAAGAATCGAAGA+AGG - chr2_2:10276305-10276324 None:intergenic 40.0%
AGATTTGAACGAACCTGGAA+GGG - chr2_2:10276337-10276356 None:intergenic 40.0%
ATTCCTCTTCAAATCAGAGG+GGG - chr2_2:10276484-10276503 None:intergenic 40.0%
CGTATTCCTCTTCAAATCAG+AGG - chr2_2:10276487-10276506 None:intergenic 40.0%
GAACTTGAACACTGCTTGTT+TGG + chr2_2:10276646-10276665 Msa0237200:CDS 40.0%
!!! ACACTGCTTGTTTGGTTTTG+TGG + chr2_2:10276654-10276673 Msa0237200:CDS 40.0%
ACGTTGTAGAATGAAGTCAC+TGG + chr2_2:10276830-10276849 Msa0237200:intron 40.0%
GTTCATATGTGTGCTATACG+GGG + chr2_2:10277045-10277064 Msa0237200:intron 40.0%
TTCATATGTGTGCTATACGG+GGG + chr2_2:10277046-10277065 Msa0237200:intron 40.0%
GGGAGTTAATATGAGAGACT+TGG + chr2_2:10277066-10277085 Msa0237200:intron 40.0%
!! CACACGTGCCTTTTTAATTG+AGG - chr2_2:10277119-10277138 None:intergenic 40.0%
AATGCCTATCACGTCATATG+CGG + chr2_2:10277247-10277266 Msa0237200:intron 40.0%
TTCAGCGGAAAAAATTGGGT+GGG - chr2_2:10277281-10277300 None:intergenic 40.0%
TTTCAGCGGAAAAAATTGGG+TGG - chr2_2:10277282-10277301 None:intergenic 40.0%
GGCTTTCAGCGGAAAAAATT+GGG - chr2_2:10277285-10277304 None:intergenic 40.0%
TGGCTTTCAGCGGAAAAAAT+TGG - chr2_2:10277286-10277305 None:intergenic 40.0%
GTAATCATGCAAAAGAGAGG+GGG + chr2_2:10277494-10277513 Msa0237200:intron 40.0%
GGGTAACAGACAAAAGAAGA+AGG + chr2_2:10277514-10277533 Msa0237200:intron 40.0%
GGGTTAATGTGAGAGATTAG+AGG - chr2_2:10277601-10277620 None:intergenic 40.0%
TACAACGTACCCACTTTCTA+TGG - chr2_2:10277791-10277810 None:intergenic 40.0%
TACGTTGTAAGCTCAATGGA+GGG + chr2_2:10277802-10277821 Msa0237200:intron 40.0%
ACTTACAGTTCGCGTATCAA+GGG + chr2_2:10277830-10277849 Msa0237200:intron 40.0%
TTATCCAATTCCACATGTGG+TGG + chr2_2:10278191-10278210 Msa0237200:intron 40.0%
!! CGAGGACTGTAATTTTTGGA+GGG + chr2_2:10278431-10278450 Msa0237200:three_prime_UTR 40.0%
!! GAGGACTGTAATTTTTGGAG+GGG + chr2_2:10278432-10278451 Msa0237200:three_prime_UTR 40.0%
GCAATAAAGAAGAGGCCTTA+AGG + chr2_2:10278530-10278549 Msa0237200:three_prime_UTR 40.0%
ATGGAGAGCAAAGATTTCAC+AGG + chr2_2:10278577-10278596 Msa0237200:three_prime_UTR 40.0%
TGGAGAGCAAAGATTTCACA+GGG + chr2_2:10278578-10278597 Msa0237200:three_prime_UTR 40.0%
TGAGCGATATTCTCCAAATC+AGG - chr2_2:10278640-10278659 None:intergenic 40.0%
TCTGCTGAGCAGAAATTACT+GGG + chr2_2:10278688-10278707 Msa0237200:three_prime_UTR 40.0%
ACTGGGTAATACTAATGTGG+TGG + chr2_2:10278705-10278724 Msa0237200:three_prime_UTR 40.0%
!! GTAATACTAATGTGGTGGAC+TGG + chr2_2:10278710-10278729 Msa0237200:three_prime_UTR 40.0%
ATTGATCGCAATGACCATGA+TGG + chr2_2:10278748-10278767 Msa0237200:three_prime_UTR 40.0%
!! TGTTTTTGTCAGGATGGAGT+TGG - chr2_2:10278807-10278826 None:intergenic 40.0%
!!! CCAGCAAACTTGTTTTTGTC+AGG - chr2_2:10278817-10278836 None:intergenic 40.0%
CCTGACAAAAACAAGTTTGC+TGG + chr2_2:10278814-10278833 Msa0237200:three_prime_UTR 40.0%
GAAGCTGCATTTAAGCTGAT+TGG + chr2_2:10278841-10278860 Msa0237200:three_prime_UTR 40.0%
AGCTGCATTTAAGCTGATTG+GGG + chr2_2:10278843-10278862 Msa0237200:three_prime_UTR 40.0%
! GGAAGCTCAAAGAGTTCTTT+TGG + chr2_2:10278864-10278883 Msa0237200:three_prime_UTR 40.0%
TGAAAAATAGATGGCATGGC+AGG - chr2_2:10278946-10278965 None:intergenic 40.0%
CCGTTGAAAAATAGATGGCA+TGG - chr2_2:10278950-10278969 None:intergenic 40.0%
CTGTGATGCAAACTAATGTC+CGG + chr2_2:10278992-10279011 Msa0237200:three_prime_UTR 40.0%
GAGCACATAGTCCAAAAAGT+AGG - chr2_2:10279099-10279118 None:intergenic 40.0%
! TGTGCTCATTTTGTTCCGTT+AGG + chr2_2:10279112-10279131 Msa0237200:three_prime_UTR 40.0%
TAAGCCCTTCATTGCATATG+AGG + chr2_2:10279188-10279207 Msa0237200:three_prime_UTR 40.0%
AACCGGCAACTAATTCAACT+CGG + chr2_2:10279229-10279248 Msa0237200:three_prime_UTR 40.0%
! AATTCAACTCGGCAAGCTTT+TGG + chr2_2:10279240-10279259 Msa0237200:three_prime_UTR 40.0%
!! GATTCGGAGTATTGTTCTTC+TGG - chr2_2:10279266-10279285 None:intergenic 40.0%
AATGTCTCTGTAAAGCCAGA+TGG + chr2_2:10279378-10279397 Msa0237200:three_prime_UTR 40.0%
TTCCTCTTTCTCTTTCCATC+TGG - chr2_2:10279396-10279415 None:intergenic 40.0%
TATAGACTCGGAACTTTCAC+TGG - chr2_2:10279433-10279452 None:intergenic 40.0%
AGTGAAAGTTCCGAGTCTAT+AGG + chr2_2:10279432-10279451 Msa0237200:three_prime_UTR 40.0%
! TCTGACAACAATGGTTTTCC+TGG + chr2_2:10279483-10279502 Msa0237200:three_prime_UTR 40.0%
AAAACACCAGGTTTCCTACA+AGG + chr2_2:10279551-10279570 Msa0237200:three_prime_UTR 40.0%
TCACGGAAACCTTCAAAACA+GGG + chr2_2:10279597-10279616 Msa0237200:three_prime_UTR 40.0%
GAAACCTTCAAAACAGGGAA+AGG + chr2_2:10279602-10279621 Msa0237200:three_prime_UTR 40.0%
!! GTTTCCTTTCCCTGTTTTGA+AGG - chr2_2:10279609-10279628 None:intergenic 40.0%
TCTGGAAGATGATCAGAAAG+AGG + chr2_2:10279662-10279681 Msa0237200:three_prime_UTR 40.0%
AAAGATAGAGGAAGCTTCAG+AGG + chr2_2:10279779-10279798 Msa0237200:three_prime_UTR 40.0%
AAGTCATTGAACTCTGGATC+GGG - chr2_2:10279849-10279868 None:intergenic 40.0%
CTTTGACAAGGACAAGAAAG+AGG + chr2_2:10279866-10279885 Msa0237200:three_prime_UTR 40.0%
AAAGAGGAATGTTTCGCTTC+TGG + chr2_2:10279882-10279901 Msa0237200:three_prime_UTR 40.0%
AAGAGGAATGTTTCGCTTCT+GGG + chr2_2:10279883-10279902 Msa0237200:three_prime_UTR 40.0%
TGATATTTCCCACAAGCACT+TGG - chr2_2:10280062-10280081 None:intergenic 40.0%
GCTTGTGGGAAATATCAACT+TGG + chr2_2:10280065-10280084 Msa0237200:three_prime_UTR 40.0%
!! CTTGGGCTCTTTTCAAGAAT+TGG + chr2_2:10280186-10280205 Msa0237200:three_prime_UTR 40.0%
CTCTTCTCTCGAATTACGAA+GGG + chr2_2:10280341-10280360 Msa0237200:three_prime_UTR 40.0%
AGTTGTTCAGATTCTCTCAC+AGG + chr2_2:10280396-10280415 Msa0237200:three_prime_UTR 40.0%
GTTGTTCAGATTCTCTCACA+GGG + chr2_2:10280397-10280416 Msa0237200:three_prime_UTR 40.0%
GGATATAGGATCGAGTTCAA+AGG - chr2_2:10280474-10280493 None:intergenic 40.0%
GGAAGAGTAATCTCTTCCAT+CGG - chr2_2:10280500-10280519 None:intergenic 40.0%
! TCCTGATGATTTGGAACTGA+AGG + chr2_2:10280517-10280536 Msa0237200:three_prime_UTR 40.0%
TCCTTCAGTTCCAAATCATC+AGG - chr2_2:10280521-10280540 None:intergenic 40.0%
GAAGGATACATCTACTTCCA+AGG + chr2_2:10280535-10280554 Msa0237200:three_prime_UTR 40.0%
TGTTAGAGCTCCATCAGTTT+CGG + chr2_2:10280616-10280635 Msa0237200:three_prime_UTR 40.0%
AATTGATTGAAGGAAGGGTC+TGG - chr2_2:10280662-10280681 None:intergenic 40.0%
AAGGTCCCATGAAAAGTTTG+AGG + chr2_2:10280691-10280710 Msa0237200:three_prime_UTR 40.0%
CACCATAAAATGCCCAAATC+TGG - chr2_2:10280721-10280740 None:intergenic 40.0%
!! TTGGGCATTTTATGGTGATG+AGG + chr2_2:10280724-10280743 Msa0237200:three_prime_UTR 40.0%
ATTAAATGCGTTCGGAGGAT+TGG + chr2_2:10280773-10280792 Msa0237200:three_prime_UTR 40.0%
CACCAATTCTGTTTCACATC+AGG + chr2_2:10280937-10280956 Msa0237200:three_prime_UTR 40.0%
CACCTGATGTGAAACAGAAT+TGG - chr2_2:10280942-10280961 None:intergenic 40.0%
! TAGTGCTGTTCGAAACAACA+AGG + chr2_2:10280967-10280986 Msa0237200:three_prime_UTR 40.0%
AGATGACCATGACTATCGAT+AGG + chr2_2:10281197-10281216 Msa0237200:three_prime_UTR 40.0%
TTCAAACTGACGGAAGAACA+TGG + chr2_2:10281256-10281275 Msa0237200:three_prime_UTR 40.0%
!! GCAAGGAATAATGGGTAAGT+TGG + chr2_2:10281338-10281357 Msa0237200:three_prime_UTR 40.0%
TAGTGCTAAACTGTTTAGCC+AGG + chr2_2:10281393-10281412 Msa0237200:three_prime_UTR 40.0%
AGTGCTAAACTGTTTAGCCA+GGG + chr2_2:10281394-10281413 Msa0237200:three_prime_UTR 40.0%
ACCAACACAACCTCTTTAAC+AGG - chr2_2:10281580-10281599 None:intergenic 40.0%
!!! TGTTGGTTTTATGCTGCGTT+TGG + chr2_2:10281593-10281612 Msa0237200:three_prime_UTR 40.0%
AGAAAACGTGCTTGTAAGGG+TGG - chr2_2:10276278-10276297 None:intergenic 45.0%
GAGATTTGAACGAACCTGGA+AGG - chr2_2:10276338-10276357 None:intergenic 45.0%
!!! CTGCTTGTTTGGTTTTGTGG+TGG + chr2_2:10276657-10276676 Msa0237200:CDS 45.0%
GTGTTATCATGCGAGATGAG+AGG + chr2_2:10276941-10276960 Msa0237200:intron 45.0%
TCAGCGGAAAAAATTGGGTG+GGG - chr2_2:10277280-10277299 None:intergenic 45.0%
TATGTAGCAGTGGCTTTCAG+CGG - chr2_2:10277296-10277315 None:intergenic 45.0%
CTTTGCCCCTCTTAGTCATA+TGG + chr2_2:10277713-10277732 Msa0237200:intron 45.0%
CACTGCCATATGACTAAGAG+GGG - chr2_2:10277721-10277740 None:intergenic 45.0%
GCACTGCCATATGACTAAGA+GGG - chr2_2:10277722-10277741 None:intergenic 45.0%
TGGGTACGTTGTAAGCTCAA+TGG + chr2_2:10277798-10277817 Msa0237200:intron 45.0%
GTACGTTGTAAGCTCAATGG+AGG + chr2_2:10277801-10277820 Msa0237200:intron 45.0%
GACTTACAGTTCGCGTATCA+AGG + chr2_2:10277829-10277848 Msa0237200:intron 45.0%
CGCGTATCAAGGGTCATTAT+TGG + chr2_2:10277840-10277859 Msa0237200:intron 45.0%
! GATTATCAAACCTCTAGGGG+TGG + chr2_2:10277922-10277941 Msa0237200:intron 45.0%
TATATCCAATCCACCCCTAG+AGG - chr2_2:10277935-10277954 None:intergenic 45.0%
GCAAAAATGATCACGCGTAC+AGG - chr2_2:10277968-10277987 None:intergenic 45.0%
!! GTGGTCTGCTAAGTTTGTTG+TGG + chr2_2:10278210-10278229 Msa0237200:intron 45.0%
ACAGTCCTCGCATTCAGATT+TGG - chr2_2:10278421-10278440 None:intergenic 45.0%
!! GCGAGGACTGTAATTTTTGG+AGG + chr2_2:10278430-10278449 Msa0237200:three_prime_UTR 45.0%
AGCAATATCCTTGGCCCTTA+AGG - chr2_2:10278548-10278567 None:intergenic 45.0%
GGAGAGCAAAGATTTCACAG+GGG + chr2_2:10278579-10278598 Msa0237200:three_prime_UTR 45.0%
GGCTCGTACATTTGCACATA+AGG + chr2_2:10278600-10278619 Msa0237200:three_prime_UTR 45.0%
CTCTGCTGAGCAGAAATTAC+TGG + chr2_2:10278687-10278706 Msa0237200:three_prime_UTR 45.0%
AATAGATGGCATGGCAGGTT+TGG - chr2_2:10278941-10278960 None:intergenic 45.0%
!! CGGACATTAGTTTGCATCAC+AGG - chr2_2:10278994-10279013 None:intergenic 45.0%
TTATGTTTGGGAAAACGGGC+CGG - chr2_2:10279014-10279033 None:intergenic 45.0%
! TTAGACTGCTGTTGCTGTTG+AGG - chr2_2:10279042-10279061 None:intergenic 45.0%
TCTAAGAAGCCAACTCAGCA+GGG + chr2_2:10279057-10279076 Msa0237200:three_prime_UTR 45.0%
CCCACCTCATATGCAATGAA+GGG - chr2_2:10279195-10279214 None:intergenic 45.0%
CCCTTCATTGCATATGAGGT+GGG + chr2_2:10279192-10279211 Msa0237200:three_prime_UTR 45.0%
ACCCACCTCATATGCAATGA+AGG - chr2_2:10279196-10279215 None:intergenic 45.0%
! TGCCGAGTTGAATTAGTTGC+CGG - chr2_2:10279234-10279253 None:intergenic 45.0%
TGAGATCCAACACCAACCTT+AGG - chr2_2:10279297-10279316 None:intergenic 45.0%
!! AAGGTTGGTGTTGGATCTCA+AGG + chr2_2:10279297-10279316 Msa0237200:three_prime_UTR 45.0%
AGCCAGATGGAAAGAGAAAG+AGG + chr2_2:10279391-10279410 Msa0237200:three_prime_UTR 45.0%
ATCAGTGCTGCCTATAGACT+CGG - chr2_2:10279445-10279464 None:intergenic 45.0%
! TCTCTAGAAGTAGAAACGCC+AGG - chr2_2:10279504-10279523 None:intergenic 45.0%
! TTTTGCCGTGAAGATCTACG+TGG - chr2_2:10279534-10279553 None:intergenic 45.0%
ATCTTCACGGCAAAAACACC+AGG + chr2_2:10279539-10279558 Msa0237200:three_prime_UTR 45.0%
CATTCTCCTTGTAGGAAACC+TGG - chr2_2:10279560-10279579 None:intergenic 45.0%
CAGGTTTCCTACAAGGAGAA+TGG + chr2_2:10279558-10279577 Msa0237200:three_prime_UTR 45.0%
GTCACTTCCATTCTCCTTGT+AGG - chr2_2:10279568-10279587 None:intergenic 45.0%
CTCACGGAAACCTTCAAAAC+AGG + chr2_2:10279596-10279615 Msa0237200:three_prime_UTR 45.0%
! GATCAGAATGGTTTGGCTTC+TGG + chr2_2:10279639-10279658 Msa0237200:three_prime_UTR 45.0%
GTGAAAATTAAGGAGGTGGG+AGG + chr2_2:10279735-10279754 Msa0237200:three_prime_UTR 45.0%
GGTGGGAGGAAAAGAAACAA+CGG + chr2_2:10279749-10279768 Msa0237200:three_prime_UTR 45.0%
GTGGGAGGAAAAGAAACAAC+GGG + chr2_2:10279750-10279769 Msa0237200:three_prime_UTR 45.0%
TTTCGCTTCTGGGCAGATAT+GGG + chr2_2:10279893-10279912 Msa0237200:three_prime_UTR 45.0%
AGAAACTGCCAAGTGCTTGT+GGG + chr2_2:10280051-10280070 Msa0237200:three_prime_UTR 45.0%
! GCCCAAGTTTCTCCTTTTCT+AGG - chr2_2:10280173-10280192 None:intergenic 45.0%
CCTTCGTAATTCGAGAGAAG+AGG - chr2_2:10280343-10280362 None:intergenic 45.0%
CCTCTTCTCTCGAATTACGA+AGG + chr2_2:10280340-10280359 Msa0237200:three_prime_UTR 45.0%
TTCTCTCGAATTACGAAGGG+AGG + chr2_2:10280344-10280363 Msa0237200:three_prime_UTR 45.0%
AATCTGAACAACTCAGCTGG+TGG - chr2_2:10280389-10280408 None:intergenic 45.0%
GAGAATCTGAACAACTCAGC+TGG - chr2_2:10280392-10280411 None:intergenic 45.0%
TCTTCCATCGGCAAGGATAT+AGG - chr2_2:10280488-10280507 None:intergenic 45.0%
AGTAATCTCTTCCATCGGCA+AGG - chr2_2:10280495-10280514 None:intergenic 45.0%
GGAAAGAAGCAACTCAGTAG+AGG + chr2_2:10280565-10280584 Msa0237200:three_prime_UTR 45.0%
AAGCAACTCAGTAGAGGAGA+AGG + chr2_2:10280571-10280590 Msa0237200:three_prime_UTR 45.0%
GATTCTGCAACCGAAACTGA+TGG - chr2_2:10280629-10280648 None:intergenic 45.0%
GTCCCATGAAAAGTTTGAGG+CGG + chr2_2:10280694-10280713 Msa0237200:three_prime_UTR 45.0%
! TCCCATGAAAAGTTTGAGGC+GGG + chr2_2:10280695-10280714 Msa0237200:three_prime_UTR 45.0%
! GGCCAGATTTGGGCATTTTA+TGG + chr2_2:10280716-10280735 Msa0237200:three_prime_UTR 45.0%
GTCAGATTAAATGCGTTCGG+AGG + chr2_2:10280768-10280787 Msa0237200:three_prime_UTR 45.0%
ATCCACGGAAGGGTGAAATT+TGG + chr2_2:10281002-10281021 Msa0237200:three_prime_UTR 45.0%
TCCACGGAAGGGTGAAATTT+GGG + chr2_2:10281003-10281022 Msa0237200:three_prime_UTR 45.0%
TTTGGGGATTGTATAGGGGA+TGG + chr2_2:10281020-10281039 Msa0237200:three_prime_UTR 45.0%
GTGAGAGAATCTGAGCAACT+CGG - chr2_2:10281224-10281243 None:intergenic 45.0%
AGTTGCTCAGATTCTCTCAC+AGG + chr2_2:10281224-10281243 Msa0237200:three_prime_UTR 45.0%
GATCCCTGCTTTCAAACTGA+CGG + chr2_2:10281246-10281265 Msa0237200:three_prime_UTR 45.0%
CTTCCGTCAGTTTGAAAGCA+GGG - chr2_2:10281252-10281271 None:intergenic 45.0%
TCTTCCGTCAGTTTGAAAGC+AGG - chr2_2:10281253-10281272 None:intergenic 45.0%
GAACATGGCAGAAATCTGAG+AGG + chr2_2:10281271-10281290 Msa0237200:three_prime_UTR 45.0%
CAGAAATCTGAGAGGCTTCT+GGG + chr2_2:10281279-10281298 Msa0237200:three_prime_UTR 45.0%
ACCACACCATTATCTCAGCA+AGG + chr2_2:10281321-10281340 Msa0237200:three_prime_UTR 45.0%
! TCCTTGCTGAGATAATGGTG+TGG - chr2_2:10281325-10281344 None:intergenic 45.0%
GCAGGTAGAACAACAAACAC+AGG - chr2_2:10281558-10281577 None:intergenic 45.0%
GTTCTACCTGCCTGTTAAAG+AGG + chr2_2:10281567-10281586 Msa0237200:three_prime_UTR 45.0%
ACACAACCTCTTTAACAGGC+AGG - chr2_2:10281576-10281595 None:intergenic 45.0%
GCCTGTTAAAGAGGTTGTGT+TGG + chr2_2:10281576-10281595 Msa0237200:three_prime_UTR 45.0%
!!! TTTATTTTAATTTTATCTAA+CGG - chr2_2:10276979-10276998 None:intergenic 5.0%
!!! ATTTTTTTATATCTTATAAA+AGG - chr2_2:10278155-10278174 None:intergenic 5.0%
TGAACGAACCTGGAAGGGTT+TGG - chr2_2:10276332-10276351 None:intergenic 50.0%
! CTTCCCCCTCTGATTTGAAG+AGG + chr2_2:10276478-10276497 Msa0237200:intron 50.0%
GGAAAAAATTGGGTGGGGTG+AGG - chr2_2:10277275-10277294 None:intergenic 50.0%
! GAGACTTTAGAAGGCTCTGC+TGG + chr2_2:10277430-10277449 Msa0237200:intron 50.0%
TTCCCTCACTGTGGTACAAG+TGG + chr2_2:10277690-10277709 Msa0237200:intron 50.0%
AGCCACTTGTACCACAGTGA+GGG - chr2_2:10277695-10277714 None:intergenic 50.0%
AAGCCACTTGTACCACAGTG+AGG - chr2_2:10277696-10277715 None:intergenic 50.0%
CGCACTGCCATATGACTAAG+AGG - chr2_2:10277723-10277742 None:intergenic 50.0%
! TCAAACCTCTAGGGGTGGAT+TGG + chr2_2:10277927-10277946 Msa0237200:intron 50.0%
CAGACCACCACATGTGGAAT+TGG - chr2_2:10278198-10278217 None:intergenic 50.0%
ACTTAGCAGACCACCACATG+TGG - chr2_2:10278204-10278223 None:intergenic 50.0%
GCTGTCCAAATCTGAATGCG+AGG + chr2_2:10278413-10278432 Msa0237200:three_prime_UTR 50.0%
GGAGGGGACTTATGCATTGT+TGG + chr2_2:10278448-10278467 Msa0237200:three_prime_UTR 50.0%
GTCTAAGAAGCCAACTCAGC+AGG + chr2_2:10279056-10279075 Msa0237200:three_prime_UTR 50.0%
CTAAGAAGCCAACTCAGCAG+GGG + chr2_2:10279058-10279077 Msa0237200:three_prime_UTR 50.0%
!! ATGGCAGTGGCCCTACTTTT+TGG + chr2_2:10279085-10279104 Msa0237200:three_prime_UTR 50.0%
GCCCTTCATTGCATATGAGG+TGG + chr2_2:10279191-10279210 Msa0237200:three_prime_UTR 50.0%
GGGTCCACAGAGTACAAAAC+CGG + chr2_2:10279212-10279231 Msa0237200:three_prime_UTR 50.0%
!!! GTTGCCGGTTTTGTACTCTG+TGG - chr2_2:10279219-10279238 None:intergenic 50.0%
!! ACCTTAGGAGCACCGTGATT+CGG - chr2_2:10279282-10279301 None:intergenic 50.0%
AATCACGGTGCTCCTAAGGT+TGG + chr2_2:10279282-10279301 Msa0237200:three_prime_UTR 50.0%
AGCGTCCACGTAGATCTTCA+CGG + chr2_2:10279526-10279545 Msa0237200:three_prime_UTR 50.0%
GAAGTGACGACGATGACTCA+CGG + chr2_2:10279580-10279599 Msa0237200:three_prime_UTR 50.0%
! GAATGGTTTGGCTTCTGGTC+TGG + chr2_2:10279644-10279663 Msa0237200:three_prime_UTR 50.0%
AACGGGCAGCTCAAAGATAG+AGG + chr2_2:10279767-10279786 Msa0237200:three_prime_UTR 50.0%
GTTTCGCTTCTGGGCAGATA+TGG + chr2_2:10279892-10279911 Msa0237200:three_prime_UTR 50.0%
TCCTCTTCGTCATCTGGATC+TGG - chr2_2:10280014-10280033 None:intergenic 50.0%
GAGAAACTGCCAAGTGCTTG+TGG + chr2_2:10280050-10280069 Msa0237200:three_prime_UTR 50.0%
GTCGGATTATGTTGAAGGCG+CGG + chr2_2:10280274-10280293 Msa0237200:three_prime_UTR 50.0%
! TCGGATTATGTTGAAGGCGC+GGG + chr2_2:10280275-10280294 Msa0237200:three_prime_UTR 50.0%
TCTCGAATTACGAAGGGAGG+TGG + chr2_2:10280347-10280366 Msa0237200:three_prime_UTR 50.0%
CTCGAATTACGAAGGGAGGT+GGG + chr2_2:10280348-10280367 Msa0237200:three_prime_UTR 50.0%
!! ATGACTGGTCTGGAAAGAGC+AGG + chr2_2:10280434-10280453 Msa0237200:three_prime_UTR 50.0%
CGAGTTCAAAGGCTCCTACA+GGG - chr2_2:10280463-10280482 None:intergenic 50.0%
TCGAGTTCAAAGGCTCCTAC+AGG - chr2_2:10280464-10280483 None:intergenic 50.0%
CGATCCTATATCCTTGCCGA+TGG + chr2_2:10280481-10280500 Msa0237200:three_prime_UTR 50.0%
! GCCCGCCTCAAACTTTTCAT+GGG - chr2_2:10280699-10280718 None:intergenic 50.0%
TAGGTGCAGAGCTTACCACT+TGG - chr2_2:10280911-10280930 None:intergenic 50.0%
CCACGGAAGGGTGAAATTTG+GGG + chr2_2:10281004-10281023 Msa0237200:three_prime_UTR 50.0%
CTCGGTCCTATCGATAGTCA+TGG - chr2_2:10281206-10281225 None:intergenic 50.0%
GCAGAAATCTGAGAGGCTTC+TGG + chr2_2:10281278-10281297 Msa0237200:three_prime_UTR 50.0%
! AGGCTTCTGGGAACTTGATC+CGG + chr2_2:10281291-10281310 Msa0237200:three_prime_UTR 50.0%
TAATGGTGTGGTACTGCTGC+CGG - chr2_2:10281313-10281332 None:intergenic 50.0%
! AGGGAGCAGCATTTGCTAAC+CGG + chr2_2:10281413-10281432 Msa0237200:three_prime_UTR 50.0%
CATCCACTCCAAACCCTTCC+AGG + chr2_2:10276321-10276340 Msa0237200:CDS 55.0%
GAACCTGGAAGGGTTTGGAG+TGG - chr2_2:10276327-10276346 None:intergenic 55.0%
! GGTGCCGCATATGACGTGAT+AGG - chr2_2:10277254-10277273 None:intergenic 55.0%
AGAAGAGGCCTTAAGGGCCA+AGG + chr2_2:10278537-10278556 Msa0237200:three_prime_UTR 55.0%
! GACTGCTGTTGCTGTTGAGG+AGG - chr2_2:10279039-10279058 None:intergenic 55.0%
CCATTAAGCCCCTGCTGAGT+TGG - chr2_2:10279069-10279088 None:intergenic 55.0%
CCAACTCAGCAGGGGCTTAA+TGG + chr2_2:10279066-10279085 Msa0237200:three_prime_UTR 55.0%
TCCGAATCACGGTGCTCCTA+AGG + chr2_2:10279278-10279297 Msa0237200:three_prime_UTR 55.0%
!! GGTGCTCCTAAGGTTGGTGT+TGG + chr2_2:10279288-10279307 Msa0237200:three_prime_UTR 55.0%
GCCAGATCCAGATGACGAAG+AGG + chr2_2:10280010-10280029 Msa0237200:three_prime_UTR 55.0%
! GGCCCGCCTCAAACTTTTCA+TGG - chr2_2:10280700-10280719 None:intergenic 55.0%
! AGTTTGAGGCGGGCCAGATT+TGG + chr2_2:10280705-10280724 Msa0237200:three_prime_UTR 55.0%
! GTTTGAGGCGGGCCAGATTT+GGG + chr2_2:10280706-10280725 Msa0237200:three_prime_UTR 55.0%
CCCCAAATTTCACCCTTCCG+TGG - chr2_2:10281007-10281026 None:intergenic 55.0%
GGTTAGCAAATGCTGCTCCC+TGG - chr2_2:10281414-10281433 None:intergenic 55.0%
CAGCAGGGGCTTAATGGCAG+TGG + chr2_2:10279072-10279091 Msa0237200:three_prime_UTR 60.0%
CTGCGCTCCTCTTCGTCATC+TGG - chr2_2:10280020-10280039 None:intergenic 60.0%
! CAGATGACGAAGAGGAGCGC+AGG + chr2_2:10280018-10280037 Msa0237200:three_prime_UTR 60.0%
! ATGACGAAGAGGAGCGCAGG+TGG + chr2_2:10280021-10280040 Msa0237200:three_prime_UTR 60.0%
! TGACGAAGAGGAGCGCAGGT+GGG + chr2_2:10280022-10280041 Msa0237200:three_prime_UTR 60.0%
!! AGAGGAGCGCAGGTGGGTTA+AGG + chr2_2:10280028-10280047 Msa0237200:three_prime_UTR 60.0%
GAAAGAGCAGGCGTCCCTGT+AGG + chr2_2:10280446-10280465 Msa0237200:three_prime_UTR 60.0%
GGGAGCGAGTTCCCTCACTG+TGG + chr2_2:10277681-10277700 Msa0237200:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10276181 10281622 10276181 ID=Msa0237200;Name=Msa0237200
chr2_2 mRNA 10276181 10281622 10276181 ID=Msa0237200-mRNA-1;Parent=Msa0237200;Name=Msa0237200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|0.5|0.66|3|3226|74
chr2_2 exon 10276181 10276342 10276181 ID=Msa0237200-mRNA-1:exon:4384;Parent=Msa0237200-mRNA-1
chr2_2 exon 10276640 10276709 10276640 ID=Msa0237200-mRNA-1:exon:4385;Parent=Msa0237200-mRNA-1
chr2_2 exon 10278404 10281622 10278404 ID=Msa0237200-mRNA-1:exon:4386;Parent=Msa0237200-mRNA-1
chr2_2 CDS 10276181 10276342 10276181 ID=Msa0237200-mRNA-1:cds;Parent=Msa0237200-mRNA-1
chr2_2 CDS 10276640 10276702 10276640 ID=Msa0237200-mRNA-1:cds;Parent=Msa0237200-mRNA-1
chr2_2 three_prime_UTR 10276703 10276709 10276703 ID=Msa0237200-mRNA-1:three_prime_utr;Parent=Msa0237200-mRNA-1
chr2_2 three_prime_UTR 10278404 10281622 10278404 ID=Msa0237200-mRNA-1:three_prime_utr;Parent=Msa0237200-mRNA-1
Gene Sequence

>Msa0237200

ATGCAGAATGATAGTGGCAATATAGGAAGAAAACAACCTAAGAGTACTACTAATAACAAAAACAATGATATTGAGAAGCTGTTTCTTCAACTCTCCACCCTTACAAGCACGTTTTCTTTCTCCTTCTTCGATTCTTCTCTCATCCACTCCAAACCCTTCCAGGTTTCGGAACTTGAACACTGCTTGTTTGGTTTTGTGGTGGATTTGTATAGAAGAAGGTGTTGA
Protein sequence

>Msa0237200

MQNDSGNIGRKQPKSTTNNKNNDIEKLFLQLSTLTSTFSFSFFDSSLIHSKPFQVSELEHCLFGFVVDLYRRRC*