AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516020 MtrunA17_Chr3g0126501 98.435 703 10 1 1 703 2 703 0.0 1450
Msa0516020 MtrunA17_Chr6g0476751 45.170 735 320 13 1 698 1 689 0.0 600
Msa0516020 MtrunA17_Chr3g0132181 40.990 788 352 20 1 696 15 781 0.0 538
Msa0516020 MtrunA17_Chr3g0120851 39.024 738 351 17 1 697 1 680 4.77e-166 493
Msa0516020 MtrunA17_Chr5g0447431 38.784 740 350 20 1 693 1 684 8.08e-154 462
Msa0516020 MtrunA17_Chr1g0191281 31.690 710 405 20 1 691 1 649 1.08e-105 336
Msa0516020 MtrunA17_Chr7g0273491 31.671 742 425 19 1 703 1 699 1.43e-104 343
Msa0516020 MtrunA17_Chr7g0273491 28.378 222 141 6 471 686 870 1079 3.12e-18 89.7
Msa0516020 MtrunA17_Chr4g0066631 32.312 718 409 17 1 697 1 662 3.01e-102 334
Msa0516020 MtrunA17_Chr4g0066631 36.864 236 125 10 466 690 730 952 1.39e-30 129
Msa0516020 MtrunA17_Chr2g0286511 32.187 727 401 22 1 692 1 670 3.82e-101 331
Msa0516020 MtrunA17_Chr2g0286511 31.646 237 138 8 463 686 714 939 1.60e-23 106
Msa0516020 MtrunA17_Chr1g0178901 36.996 273 160 7 428 691 376 645 2.97e-51 189
Msa0516020 MtrunA17_Chr1g0178901 41.964 224 105 7 1 222 1 201 7.93e-40 155
Msa0516020 MtrunA17_Chr5g0410601 41.631 233 129 3 463 693 322 549 5.83e-46 172
Msa0516020 MtrunA17_Chr1g0172601 37.339 233 135 6 462 691 152 376 5.80e-44 162
Msa0516020 MtrunA17_Chr1g0191271 53.659 123 56 1 1 122 1 123 2.87e-37 135
Msa0516020 MtrunA17_Chr5g0427371 33.613 238 139 6 1 228 2 230 3.41e-30 122
Msa0516020 MtrunA17_Chr8g0338171 33.000 200 121 4 498 697 1 187 1.50e-27 114
Msa0516020 MtrunA17_Chr3g0132971 31.624 234 109 6 1 228 1 189 3.73e-25 104
Msa0516020 MtrunA17_Chr8g0338141 55.556 72 31 1 1 71 1 72 6.97e-23 92.8
Msa0516020 MtrunA17_Chr4g0049941 29.572 257 151 7 4 230 5 261 1.01e-20 96.3
Msa0516020 MtrunA17_Chr8g0338161 39.437 142 75 4 82 223 2 132 1.81e-20 92.0
Msa0516020 MtrunA17_Chr2g0295361 59.091 66 27 0 65 130 38 103 2.06e-16 80.1
Msa0516020 MtrunA17_Chr2g0279591 33.071 127 84 1 4 129 5 131 1.12e-14 77.4
Msa0516020 MtrunA17_Chr2g0295821 33.735 166 72 2 1 128 1 166 1.28e-14 76.3
Msa0516020 MtrunA17_Chr1g0191291 56.452 62 27 0 1 62 1 62 2.02e-14 72.4
Msa0516020 MtrunA17_Chr2g0295831 32.370 173 71 3 1 128 1 172 1.19e-13 71.2
Msa0516020 MtrunA17_Chr4g0067741 54.545 66 30 0 65 130 36 101 1.86e-13 71.2
Msa0516020 MtrunA17_Chr2g0307061 43.836 73 41 0 55 127 99 171 1.34e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516020 AT5G53150.3 46.371 744 331 16 1 703 1 717 0.0 628
Msa0516020 AT5G53150.6 46.371 744 331 16 1 703 1 717 0.0 628
Msa0516020 AT5G53150.2 46.371 744 331 16 1 703 1 717 0.0 628
Msa0516020 AT5G53150.4 46.477 738 310 18 1 703 1 688 0.0 616
Msa0516020 AT5G53150.1 46.477 738 310 18 1 703 1 688 0.0 616
Msa0516020 AT2G25560.1 39.210 709 354 16 1 691 1 650 6.22e-146 441
Msa0516020 AT2G05230.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0516020 AT2G05250.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0516020 AT5G53150.5 41.788 548 252 15 1 508 1 521 8.96e-122 375
Msa0516020 AT5G35753.1 38.462 364 201 7 339 691 72 423 8.20e-77 253
Msa0516020 AT5G37380.8 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.4 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.7 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.2 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.6 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.1 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.5 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.3 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G37380.9 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0516020 AT5G50115.1 41.935 279 127 4 424 701 227 471 8.82e-66 225
Msa0516020 AT5G50115.1 31.013 158 102 2 2 152 10 167 3.56e-15 79.3
Msa0516020 AT4G19570.1 44.534 247 111 6 1 222 1 246 1.33e-55 199
Msa0516020 AT5G37440.1 38.782 312 136 11 1 306 16 278 9.64e-53 184
Msa0516020 AT5G37750.1 42.797 236 89 8 11 244 23 214 1.03e-51 179
Msa0516020 AT4G19590.3 63.158 133 48 1 1 132 1 133 5.30e-49 176
Msa0516020 AT4G19590.2 63.158 133 48 1 1 132 1 133 7.54e-49 176
Msa0516020 AT4G19590.2 32.836 134 74 4 177 294 210 343 1.86e-11 67.0
Msa0516020 AT3G04980.2 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0516020 AT3G04980.2 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0516020 AT3G04980.2 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0516020 AT3G04980.3 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0516020 AT3G04980.3 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0516020 AT3G04980.3 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0516020 AT4G19580.1 41.350 237 100 7 1 199 1 236 9.48e-44 160
Msa0516020 AT4G19590.1 61.983 121 45 1 13 132 2 122 7.56e-42 155
Msa0516020 AT3G04960.2 39.245 265 135 10 433 686 235 484 1.41e-41 159
Msa0516020 AT3G04960.4 39.245 265 135 10 433 686 284 533 2.64e-41 159
Msa0516020 AT5G18750.1 37.607 234 139 4 464 691 396 628 2.74e-41 162
Msa0516020 AT5G18750.1 33.793 290 171 6 4 280 3 284 9.53e-35 142
Msa0516020 AT5G18750.1 34.052 232 142 7 463 689 656 881 6.86e-30 127
Msa0516020 AT3G04960.1 39.245 265 135 10 433 686 287 536 4.65e-41 158
Msa0516020 AT3G04960.3 39.245 265 135 10 433 686 336 585 6.98e-41 159
Msa0516020 AT5G27240.1 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0516020 AT5G27240.1 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0516020 AT5G27240.1 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0516020 AT5G27240.2 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0516020 AT5G27240.2 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0516020 AT5G27240.2 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0516020 AT5G27240.3 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0516020 AT5G27240.3 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0516020 AT5G27240.3 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0516020 AT3G04980.1 43.350 203 89 3 23 224 5 182 3.45e-40 159
Msa0516020 AT3G04980.1 33.906 233 140 7 464 692 472 694 7.05e-34 139
Msa0516020 AT3G04980.1 29.183 257 153 10 445 692 928 1164 3.57e-17 86.7
Msa0516020 AT3G06340.2 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0516020 AT3G06340.2 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0516020 AT3G06340.4 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0516020 AT3G06340.4 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0516020 AT3G06340.3 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0516020 AT3G06340.3 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0516020 AT3G06340.1 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0516020 AT3G06340.1 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0516020 AT5G18740.1 32.365 241 147 4 471 697 174 412 3.48e-33 133
Msa0516020 AT4G27980.1 33.333 240 144 9 452 686 301 529 4.86e-30 125
Msa0516020 AT4G27980.2 34.071 226 136 8 463 686 353 567 7.13e-30 125
Msa0516020 AT4G27980.3 32.500 240 146 8 452 686 338 566 7.97e-30 125
Msa0516020 AT2G01710.1 32.189 233 118 5 4 228 7 207 8.32e-29 117
Msa0516020 AT2G01710.2 32.189 233 118 5 4 228 51 251 1.57e-28 118
Msa0516020 AT2G35540.1 33.480 227 140 6 468 690 368 587 6.59e-28 119
Msa0516020 AT2G35540.1 30.374 214 111 2 7 220 12 187 1.61e-25 112
Msa0516020 AT5G18730.1 31.818 242 148 6 471 697 44 283 1.42e-27 118
Msa0516020 AT5G18730.1 27.586 232 137 9 483 691 304 527 1.05e-12 71.6
Msa0516020 AT3G05110.1 33.488 215 126 6 463 674 158 358 1.90e-27 115
Msa0516020 AT5G64360.1 30.594 219 140 6 15 229 25 235 1.33e-21 98.6
Msa0516020 AT5G37760.1 41.606 137 50 2 13 149 79 185 1.52e-21 94.0
Msa0516020 AT5G64360.5 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G64360.7 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G64360.6 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G64360.3 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G64360.2 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G64360.4 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0516020 AT5G62780.1 51.220 82 28 1 51 120 3 84 1.53e-18 85.1
Msa0516020 AT5G09540.1 28.879 232 133 6 2 229 8 211 1.87e-18 86.7
Msa0516020 AT5G50510.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0516020 AT5G50620.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0516020 AT3G06778.1 46.154 78 42 0 53 130 29 106 2.78e-14 73.2
Msa0516020 AT1G09260.1 35.870 92 55 2 43 133 50 138 8.88e-14 69.3
Msa0516020 AT5G18720.3 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0516020 AT5G18720.2 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0516020 AT5G18720.1 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0516020 AT5G49060.2 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0516020 AT5G49060.1 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0516020 AT1G62970.1 29.851 134 81 4 15 135 18 151 6.22e-12 69.7
Msa0516020 AT3G57340.1 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0516020 AT3G57340.2 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0516020 AT5G05750.1 44.118 68 38 0 60 127 108 175 7.89e-11 64.3

Find 171 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAACTTGTGGGGATTTC+AGG 0.135241 3_4:-67459003 Msa0516020:CDS
ACTCCCCTTGTTAAGTTTCC+TGG 0.260877 3_4:-67458752 Msa0516020:CDS
GCAGATGATATTCGCGTTAA+TGG 0.268418 3_4:-67459661 Msa0516020:CDS
TTCTGCCCCTCCACAGAAAA+AGG 0.278721 3_4:-67460088 Msa0516020:CDS
TTGTTAAGTTTCCTGGCTTT+AGG 0.285789 3_4:-67458745 Msa0516020:CDS
GCAGGTTTGGGCAGTTTCTC+TGG 0.291233 3_4:-67459592 Msa0516020:CDS
CAGGATGACGTTGTGAATTC+TGG 0.294891 3_4:+67459893 None:intergenic
CAACTAATCCGCATTCTAAA+TGG 0.298217 3_4:+67459085 None:intergenic
CCAATAGATTGGGTAGGTTC+TGG 0.312215 3_4:-67459031 Msa0516020:CDS
CACTCCAGAATGGCTGGTTT+TGG 0.313195 3_4:-67459838 Msa0516020:CDS
CCAGAACCTACCCAATCTAT+TGG 0.320518 3_4:+67459031 None:intergenic
TCCAACTCTCGGCAACCTAT+TGG 0.323407 3_4:+67458602 None:intergenic
CTGGTTATATTCTAGTCTCT+TGG 0.331341 3_4:+67460260 None:intergenic
CTCTCGAAGCAACAGTGAAT+TGG 0.332588 3_4:-67459056 Msa0516020:CDS
AATCGAAACATCTCCTCTTT+AGG 0.335882 3_4:+67458677 None:intergenic
CCTTTGCAGAGGACCAGGTC+TGG 0.336859 3_4:-67459177 Msa0516020:CDS
GCTACCAAAACCAGCCATTC+TGG 0.342521 3_4:+67459834 None:intergenic
TTTGAACTAGGTACATTTGA+TGG 0.348433 3_4:+67460186 None:intergenic
GGAGTTGTCCGCATCTTTCC+AGG 0.349771 3_4:-67458908 Msa0516020:CDS
ACTTGAAGAATGGAGGTTAA+TGG 0.359594 3_4:-67459428 Msa0516020:CDS
AGCCTTTCAAACTCCTCTTC+TGG 0.362339 3_4:+67460241 None:intergenic
GGATCTGGAGCAGCAGGTTT+GGG 0.373731 3_4:-67459604 Msa0516020:CDS
CATTTAGAATGCGGATTAGT+TGG 0.373866 3_4:-67459084 Msa0516020:CDS
GTGAATTCTGGTGCTGTTGA+TGG 0.377846 3_4:+67459905 None:intergenic
GGGATCTGGAGCAGCAGGTT+TGG 0.384095 3_4:-67459605 Msa0516020:CDS
GAATCCTCCTAACCTCATTC+TGG 0.385216 3_4:+67458699 None:intergenic
TTGGAGCGTTATGAGCTTCC+TGG 0.385283 3_4:+67458621 None:intergenic
AGGTTTGAATTATTACTTCC+AGG 0.385391 3_4:+67459874 None:intergenic
TGATGGGAGGGCAAACTTGA+TGG 0.385605 3_4:+67459922 None:intergenic
ATAGAAACTGGTCTCCTGAT+TGG 0.387089 3_4:-67458862 Msa0516020:CDS
CTTTGCAGAGGACCAGGTCT+GGG 0.387294 3_4:-67459176 Msa0516020:CDS
TATGGAGAGTCCAATGTTAA+TGG 0.390480 3_4:-67459331 Msa0516020:CDS
CTCTCCCATTCAGCAATTGA+TGG 0.393875 3_4:+67459730 None:intergenic
AGGTCAAAATTGTGAAAATC+AGG 0.395280 3_4:+67459217 None:intergenic
GAACAAAGTAAGTGGAGAAA+TGG 0.401074 3_4:-67460448 Msa0516020:CDS
GCAACTTCAAATGTGAGGTC+TGG 0.403438 3_4:-67460138 Msa0516020:CDS
TTGGGCAGTTTCTCTGGATC+AGG 0.403555 3_4:-67459586 Msa0516020:CDS
GTGAATTGGGCCCAATAGAT+TGG 0.406953 3_4:-67459042 Msa0516020:CDS
TCTGGGCACTTTATAGAAAC+TGG 0.408209 3_4:-67458874 Msa0516020:CDS
ACAACTGGTTCAGAGAAGTA+TGG 0.411674 3_4:-67459349 Msa0516020:CDS
GATGTTTCGATTCTCTCATC+AGG 0.412444 3_4:-67458666 Msa0516020:CDS
TCCTAACCTCATTCTGGTCC+TGG 0.413595 3_4:+67458705 None:intergenic
TGCAAAGAAGTTTGCTATCA+AGG 0.415023 3_4:-67460544 Msa0516020:CDS
TAATGGCTATCCAGGATATA+CGG 0.416189 3_4:-67459644 Msa0516020:CDS
AGCACCATCAATTGCTGAAT+GGG 0.416490 3_4:-67459734 Msa0516020:CDS
CTATGTTACAATCAATGTTC+CGG 0.418874 3_4:-67459242 Msa0516020:CDS
GCAACAAAGATGAGGCAGTC+AGG 0.422134 3_4:-67460614 Msa0516020:CDS
TGGATCAGGAAAGGCTAACT+TGG 0.429304 3_4:-67459572 Msa0516020:CDS
TGTCCGCATCTTTCCAGGTA+AGG 0.431625 3_4:-67458903 Msa0516020:CDS
TACTTGTGTATCACTTCATC+TGG 0.431902 3_4:+67458827 None:intergenic
GGGAGGAGGACTCCTCTCTA+TGG 0.433642 3_4:+67459957 None:intergenic
GATGGATGCCCAGCACGGTT+TGG 0.435679 3_4:+67460204 None:intergenic
CCGCATTCTAAATGGCTTTG+TGG 0.437694 3_4:+67459093 None:intergenic
CGGAACATTGATTGTAACAT+AGG 0.437900 3_4:+67459243 None:intergenic
TCTCGAAGCAACAGTGAATT+GGG 0.438567 3_4:-67459055 Msa0516020:CDS
TGCAGAGGGTGCATTTCAGC+TGG 0.443695 3_4:-67460316 Msa0516020:CDS
TAGAAAGCAGTACAGGAAAC+TGG 0.447905 3_4:-67460376 Msa0516020:CDS
TGAATTCTAGCATAATATCT+AGG 0.449645 3_4:+67459127 None:intergenic
AGCTGCAAGTGTCGTGCAAA+AGG 0.451148 3_4:-67459782 Msa0516020:CDS
TTCAGCTGGTTTCAGAGGCA+TGG 0.452089 3_4:-67460302 Msa0516020:CDS
AAATGATTTGCCGTATATCC+TGG 0.452218 3_4:+67459634 None:intergenic
ATTCGCGTTAATGGCTATCC+AGG 0.452896 3_4:-67459652 Msa0516020:CDS
CACAAAAGCTTCATTACAGT+TGG 0.453452 3_4:+67459981 None:intergenic
CTTATTACAGATAGTCCAAA+AGG 0.455028 3_4:+67460059 None:intergenic
TGGCCACTGAGCAAGTGATT+AGG 0.456167 3_4:+67458641 None:intergenic
CAGAACCTACCCAATCTATT+GGG 0.457508 3_4:+67459032 None:intergenic
CAACTTCAAATGTGAGGTCT+GGG 0.460913 3_4:-67460137 Msa0516020:CDS
TCAAATGTACCTAGTTCAAA+TGG 0.462096 3_4:-67460183 Msa0516020:CDS
CTGATGGTTCTATGAAGAAA+AGG 0.462638 3_4:-67459687 Msa0516020:CDS
TGAGTTACGAAACATGTTGA+TGG 0.462926 3_4:-67459479 Msa0516020:CDS
AAAGATGCGGACAACTCCTC+TGG 0.465447 3_4:+67458913 None:intergenic
ATGGATTGGTATGGTATACT+TGG 0.466628 3_4:-67460429 Msa0516020:CDS
TAATCACTTGCTCAGTGGCC+AGG 0.470311 3_4:-67458639 Msa0516020:CDS
CACGACACTTGCAGCTTGAG+CGG 0.470563 3_4:+67459789 None:intergenic
GGTTCCCACTCCAGAATGGC+TGG 0.472268 3_4:-67459844 Msa0516020:CDS
AAATTTGTATGCTGATTTGG+AGG 0.472377 3_4:-67460517 Msa0516020:CDS
GAAGCTCATAACGCTCCAAT+AGG 0.472605 3_4:-67458617 Msa0516020:CDS
ATGCTTGTTACCATTAACAT+TGG 0.473523 3_4:+67459321 None:intergenic
CACAAGGTTAGGTGGACAAA+AGG 0.475228 3_4:-67458938 Msa0516020:CDS
ATATTCAATGACAAAACAAC+TGG 0.477357 3_4:-67459364 Msa0516020:CDS
CATACTACTCCAAACCGTGC+TGG 0.481237 3_4:-67460213 Msa0516020:CDS
GCTACGGGATCTGGAGCAGC+AGG 0.481387 3_4:-67459610 Msa0516020:CDS
AAGTTCCTTTGCAGAGGACC+AGG 0.482078 3_4:-67459182 Msa0516020:CDS
TGAATTCTGGTGCTGTTGAT+GGG 0.482563 3_4:+67459906 None:intergenic
GGAGTATGTTCATTCCAATC+AGG 0.487114 3_4:+67458848 None:intergenic
TGAATTGGGCCCAATAGATT+GGG 0.488808 3_4:-67459041 Msa0516020:CDS
AGGAACTTTCAGCTCTATCC+AGG 0.489052 3_4:+67459197 None:intergenic
AGGTCTAAAGGTGTAGCTGC+TGG 0.492454 3_4:+67458578 None:intergenic
ACGAAACATGTTGATGGATA+AGG 0.495669 3_4:-67459473 Msa0516020:CDS
CACGGTTTGGAGTAGTATGT+TGG 0.497106 3_4:+67460217 None:intergenic
GTCCGCATCTTTCCAGGTAA+GGG 0.498134 3_4:-67458902 Msa0516020:CDS
GATAGCAACAGAAGCTAATG+AGG 0.502266 3_4:-67458549 Msa0516020:CDS
GTCTGGGAATCATAATGCTC+GGG 0.503789 3_4:-67460121 Msa0516020:CDS
CAGAATTCACAACGTCATCC+TGG 0.504825 3_4:-67459892 Msa0516020:CDS
GGACTATCTGTAATAAGTGC+AGG 0.505271 3_4:-67460053 Msa0516020:CDS
GACAGTATTTCGAAGGCACC+AGG 0.509786 3_4:-67458723 Msa0516020:CDS
CAAAACCAGCCATTCTGGAG+TGG 0.511268 3_4:+67459839 None:intergenic
TCCAATAGGTTGCCGAGAGT+TGG 0.511728 3_4:-67458603 Msa0516020:CDS
TGTGGAGGGGCAGAAGTGGC+AGG 0.513069 3_4:+67460096 None:intergenic
CATTGATTGTAACATAGGCT+TGG 0.515798 3_4:+67459248 None:intergenic
CGAAATACTGTCCTAAAGCC+AGG 0.516363 3_4:+67458734 None:intergenic
ATACTACTCCAAACCGTGCT+GGG 0.517498 3_4:-67460212 Msa0516020:CDS
GAGCACCATCAATTGCTGAA+TGG 0.520958 3_4:-67459735 Msa0516020:CDS
AACAGTCTCTTCATCAGCAA+AGG 0.522182 3_4:+67460398 None:intergenic
AGACTGTTAGAAAGCAGTAC+AGG 0.523671 3_4:-67460383 Msa0516020:CDS
TGCATTTCAGCTGGTTTCAG+AGG 0.526061 3_4:-67460307 Msa0516020:CDS
GCTGCTTATGACGATGATGA+TGG 0.528010 3_4:-67459154 Msa0516020:CDS
TCTGCTGAGAACAAAGTAAG+TGG 0.530077 3_4:-67460456 Msa0516020:CDS
CGTCATAAGCAGCCCAGACC+TGG 0.530148 3_4:+67459164 None:intergenic
TCTTTACCTGTCACATCTGA+TGG 0.530274 3_4:-67459286 Msa0516020:CDS
TAGCTTCTGTTGCTATCTGA+AGG 0.531060 3_4:+67458555 None:intergenic
AAATTGTGAAAATCAGGATC+CGG 0.532427 3_4:+67459223 None:intergenic
TAATAATTCAAACCTTCAGT+GGG 0.534646 3_4:-67459866 Msa0516020:CDS
GAGGATTCAAATGTCTAAGA+AGG 0.536968 3_4:-67459710 Msa0516020:CDS
ACAAAAGCTTCATTACAGTT+GGG 0.539482 3_4:+67459982 None:intergenic
ACCAGGACCAGAATGAGGTT+AGG 0.540017 3_4:-67458706 Msa0516020:CDS
ACTTGTGGGGATTTCAGGAC+TGG 0.540134 3_4:-67458998 Msa0516020:CDS
ACAGAAGCTAATGAGGCAGC+AGG 0.543005 3_4:-67458542 Msa0516020:CDS
CATCAATTGCTGAATGGGAG+AGG 0.543526 3_4:-67459729 Msa0516020:CDS
GCTATCTGAAGGAGGTCTAA+AGG 0.548645 3_4:+67458566 None:intergenic
ACAGTCTCTTCATCAGCAAA+GGG 0.551588 3_4:+67460399 None:intergenic
AAGTAAGTGGAGAAATGGAT+TGG 0.558705 3_4:-67460443 Msa0516020:CDS
CCAGACCTGGTCCTCTGCAA+AGG 0.559516 3_4:+67459177 None:intergenic
TTTCTGTGGAGGGGCAGAAG+TGG 0.559602 3_4:+67460092 None:intergenic
TGATAATAACCATTTGAACT+AGG 0.560472 3_4:+67460174 None:intergenic
GGTTAGGAGGATTCCTAAAG+AGG 0.561219 3_4:-67458690 Msa0516020:CDS
CAACAAAGATGAGGCAGTCA+GGG 0.562873 3_4:-67460613 Msa0516020:CDS
GTGGGGTTCCCACTCCAGAA+TGG 0.563354 3_4:-67459848 Msa0516020:CDS
AGTGGAGAAATGGATTGGTA+TGG 0.565199 3_4:-67460438 Msa0516020:CDS
TCCGCATCTTTCCAGGTAAG+GGG 0.566183 3_4:-67458901 Msa0516020:CDS
GACTAGAATATAACCAGAAG+AGG 0.567369 3_4:-67460254 Msa0516020:CDS
GGTCTGGGAATCATAATGCT+CGG 0.568311 3_4:-67460122 Msa0516020:CDS
AACCAGAAGAGGAGTTTGAA+AGG 0.568957 3_4:-67460243 Msa0516020:CDS
AACAAGTCTTTAGGTGCAGA+GGG 0.573429 3_4:-67460330 Msa0516020:CDS
AGCTGAAAGTTCCTTTGCAG+AGG 0.574398 3_4:-67459188 Msa0516020:CDS
CAAATGTCTAAGAAGGCTGA+TGG 0.579017 3_4:-67459703 Msa0516020:CDS
GCTTTAGGACAGTATTTCGA+AGG 0.582482 3_4:-67458730 Msa0516020:CDS
ACTGTACCATCAGATGTGAC+AGG 0.585213 3_4:+67459280 None:intergenic
GGCAACAGACGACGATCCAT+CGG 0.586319 3_4:+67459810 None:intergenic
TGGAGTGGGAACCCCACTGA+AGG 0.587012 3_4:+67459854 None:intergenic
CTTCTGTTGCTATCTGAAGG+AGG 0.589865 3_4:+67458558 None:intergenic
AAACAAGTCTTTAGGTGCAG+AGG 0.591608 3_4:-67460331 Msa0516020:CDS
ATTCTGGTGCTGTTGATGGG+AGG 0.596016 3_4:+67459909 None:intergenic
CAGTTTCTCTGGATCAGGAA+AGG 0.599343 3_4:-67459581 Msa0516020:CDS
AGGACCAGAATGAGGTTAGG+AGG 0.601398 3_4:-67458703 Msa0516020:CDS
TTCTGGTGCTGTTGATGGGA+GGG 0.601651 3_4:+67459910 None:intergenic
AGTGAGAAAGTGAAGAGAGA+AGG 0.603158 3_4:-67459757 Msa0516020:CDS
GTAATAATTCAAACCTTCAG+TGG 0.605977 3_4:-67459867 Msa0516020:CDS
AAAACCAGCCATTCTGGAGT+GGG 0.608477 3_4:+67459840 None:intergenic
CCACAAAGCCATTTAGAATG+CGG 0.614075 3_4:-67459093 Msa0516020:CDS
CCGCATCTTTCCAGGTAAGG+GGG 0.621724 3_4:-67458900 Msa0516020:CDS
AAGGCACCAGGACCAGAATG+AGG 0.626567 3_4:-67458711 Msa0516020:CDS
GATGGAGTGCAACAAAGATG+AGG 0.628263 3_4:-67460622 Msa0516020:CDS
TAAAGCCAGGAAACTTAACA+AGG 0.631614 3_4:+67458747 None:intergenic
TTGGGCCCAATAGATTGGGT+AGG 0.631748 3_4:-67459037 Msa0516020:CDS
TAGCTGCTGGATCCAACTCT+CGG 0.634962 3_4:+67458591 None:intergenic
ACATGTTGATGGATAAGGCA+CGG 0.636563 3_4:-67459468 Msa0516020:CDS
TGGTTCTATGAAGAAAAGGA+AGG 0.636867 3_4:-67459683 Msa0516020:CDS
AGTCAGGGCTAAAGAAATAG+CGG 0.640488 3_4:-67460598 Msa0516020:CDS
CATTTGATGGATGCCCAGCA+CGG 0.640859 3_4:+67460199 None:intergenic
AGAATGCAACTTCAAATGTG+AGG 0.642079 3_4:-67460143 Msa0516020:CDS
GATGATTTCAGTGAAGAGCA+AGG 0.643056 3_4:-67458785 Msa0516020:CDS
AAGCCAGGAAACTTAACAAG+GGG 0.655417 3_4:+67458749 None:intergenic
AGGTGGACAAAAGGCACCAG+AGG 0.656547 3_4:-67458929 Msa0516020:CDS
AAAGCCAGGAAACTTAACAA+GGG 0.677929 3_4:+67458748 None:intergenic
GTTCCTAATCACTTGCTCAG+TGG 0.678955 3_4:-67458644 Msa0516020:CDS
ATATTATGCTAGAATTCACA+AGG 0.689430 3_4:-67459122 Msa0516020:CDS
AATAATTCAAACCTTCAGTG+GGG 0.716457 3_4:-67459865 Msa0516020:CDS
GATACACAAGTATGACATGG+TGG 0.719131 3_4:-67458816 Msa0516020:CDS
GGGCTAAAGAAATAGCGGAG+AGG 0.758438 3_4:-67460593 Msa0516020:CDS
AGTGATACACAAGTATGACA+TGG 0.781290 3_4:-67458819 Msa0516020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTTGTATGCTGATT+TGG - chr3_4:67458633-67458652 Msa0516020:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - chr3_4:67459715-67459734 Msa0516020:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - chr3_4:67460199-67460218 Msa0516020:CDS 20.0%
!!! TAAAAATTTGTATGCTGATT+TGG - chr3_4:67458633-67458652 Msa0516020:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - chr3_4:67459715-67459734 Msa0516020:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - chr3_4:67460199-67460218 Msa0516020:CDS 20.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - chr3_4:67458586-67458605 Msa0516020:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + chr3_4:67458668-67458687 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + chr3_4:67458669-67458688 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + chr3_4:67458982-67459001 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - chr3_4:67459287-67459306 Msa0516020:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - chr3_4:67459789-67459808 Msa0516020:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + chr3_4:67460029-67460048 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - chr3_4:67460031-67460050 Msa0516020:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG - chr3_4:67460140-67460159 Msa0516020:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG - chr3_4:67460141-67460160 Msa0516020:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG - chr3_4:67460142-67460161 Msa0516020:CDS 25.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - chr3_4:67458586-67458605 Msa0516020:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + chr3_4:67458668-67458687 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + chr3_4:67458669-67458688 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + chr3_4:67458982-67459001 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - chr3_4:67459287-67459306 Msa0516020:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - chr3_4:67459789-67459808 Msa0516020:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + chr3_4:67460029-67460048 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - chr3_4:67460031-67460050 Msa0516020:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG - chr3_4:67460140-67460159 Msa0516020:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG - chr3_4:67460141-67460160 Msa0516020:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG - chr3_4:67460142-67460161 Msa0516020:CDS 25.0%
!! AAATTTGTATGCTGATTTGG+AGG - chr3_4:67458636-67458655 Msa0516020:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + chr3_4:67458816-67458835 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + chr3_4:67458970-67458989 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - chr3_4:67458970-67458989 Msa0516020:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + chr3_4:67459097-67459116 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + chr3_4:67459174-67459193 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + chr3_4:67459219-67459238 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + chr3_4:67459220-67459239 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + chr3_4:67459282-67459301 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - chr3_4:67459286-67459305 Msa0516020:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - chr3_4:67459288-67459307 Msa0516020:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - chr3_4:67459600-67459619 Msa0516020:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - chr3_4:67459718-67459737 Msa0516020:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + chr3_4:67459835-67459854 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - chr3_4:67459911-67459930 Msa0516020:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + chr3_4:67459933-67459952 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + chr3_4:67459939-67459958 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - chr3_4:67459938-67459957 Msa0516020:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - chr3_4:67460204-67460223 Msa0516020:CDS 30.0%
!! AAATTTGTATGCTGATTTGG+AGG - chr3_4:67458636-67458655 Msa0516020:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + chr3_4:67458816-67458835 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + chr3_4:67458970-67458989 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - chr3_4:67458970-67458989 Msa0516020:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + chr3_4:67459097-67459116 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + chr3_4:67459174-67459193 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + chr3_4:67459219-67459238 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + chr3_4:67459220-67459239 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + chr3_4:67459282-67459301 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - chr3_4:67459286-67459305 Msa0516020:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - chr3_4:67459288-67459307 Msa0516020:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - chr3_4:67459600-67459619 Msa0516020:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - chr3_4:67459718-67459737 Msa0516020:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + chr3_4:67459835-67459854 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - chr3_4:67459911-67459930 Msa0516020:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + chr3_4:67459933-67459952 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + chr3_4:67459939-67459958 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - chr3_4:67459938-67459957 Msa0516020:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - chr3_4:67460204-67460223 Msa0516020:CDS 30.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - chr3_4:67458576-67458595 Msa0516020:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - chr3_4:67458609-67458628 Msa0516020:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - chr3_4:67458705-67458724 Msa0516020:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - chr3_4:67458710-67458729 Msa0516020:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - chr3_4:67458724-67458743 Msa0516020:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + chr3_4:67458817-67458836 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - chr3_4:67458814-67458833 Msa0516020:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + chr3_4:67458896-67458915 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - chr3_4:67458899-67458918 Msa0516020:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - chr3_4:67459010-67459029 Msa0516020:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - chr3_4:67459079-67459098 Msa0516020:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG + chr3_4:67459175-67459194 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - chr3_4:67459173-67459192 Msa0516020:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - chr3_4:67459443-67459462 Msa0516020:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - chr3_4:67459466-67459485 Msa0516020:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - chr3_4:67459470-67459489 Msa0516020:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - chr3_4:67459509-67459528 Msa0516020:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + chr3_4:67459522-67459541 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - chr3_4:67459527-67459546 Msa0516020:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - chr3_4:67459592-67459611 Msa0516020:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - chr3_4:67459609-67459628 Msa0516020:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - chr3_4:67459615-67459634 Msa0516020:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - chr3_4:67459674-67459693 Msa0516020:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - chr3_4:67459680-67459699 Msa0516020:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - chr3_4:67459725-67459744 Msa0516020:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - chr3_4:67459822-67459841 Msa0516020:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + chr3_4:67459908-67459927 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + chr3_4:67459913-67459932 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + chr3_4:67460071-67460090 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - chr3_4:67460069-67460088 Msa0516020:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - chr3_4:67460150-67460169 Msa0516020:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + chr3_4:67460329-67460348 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - chr3_4:67460334-67460353 Msa0516020:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + chr3_4:67460408-67460427 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + chr3_4:67460409-67460428 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - chr3_4:67460408-67460427 Msa0516020:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + chr3_4:67460479-67460498 None:intergenic 35.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - chr3_4:67458576-67458595 Msa0516020:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - chr3_4:67458609-67458628 Msa0516020:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - chr3_4:67458705-67458724 Msa0516020:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - chr3_4:67458710-67458729 Msa0516020:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - chr3_4:67458724-67458743 Msa0516020:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + chr3_4:67458817-67458836 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - chr3_4:67458814-67458833 Msa0516020:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + chr3_4:67458896-67458915 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - chr3_4:67458899-67458918 Msa0516020:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - chr3_4:67459010-67459029 Msa0516020:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - chr3_4:67459079-67459098 Msa0516020:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG + chr3_4:67459175-67459194 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - chr3_4:67459173-67459192 Msa0516020:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - chr3_4:67459443-67459462 Msa0516020:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - chr3_4:67459466-67459485 Msa0516020:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - chr3_4:67459470-67459489 Msa0516020:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - chr3_4:67459509-67459528 Msa0516020:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + chr3_4:67459522-67459541 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - chr3_4:67459527-67459546 Msa0516020:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - chr3_4:67459592-67459611 Msa0516020:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - chr3_4:67459609-67459628 Msa0516020:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - chr3_4:67459615-67459634 Msa0516020:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - chr3_4:67459674-67459693 Msa0516020:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - chr3_4:67459680-67459699 Msa0516020:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - chr3_4:67459725-67459744 Msa0516020:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - chr3_4:67459822-67459841 Msa0516020:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + chr3_4:67459908-67459927 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + chr3_4:67459913-67459932 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + chr3_4:67460071-67460090 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - chr3_4:67460069-67460088 Msa0516020:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - chr3_4:67460150-67460169 Msa0516020:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + chr3_4:67460329-67460348 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - chr3_4:67460334-67460353 Msa0516020:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + chr3_4:67460408-67460427 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + chr3_4:67460409-67460428 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - chr3_4:67460408-67460427 Msa0516020:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + chr3_4:67460479-67460498 None:intergenic 35.0%
AGTCAGGGCTAAAGAAATAG+CGG - chr3_4:67458555-67458574 Msa0516020:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - chr3_4:67458575-67458594 Msa0516020:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - chr3_4:67458697-67458716 Msa0516020:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - chr3_4:67458715-67458734 Msa0516020:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + chr3_4:67458757-67458776 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + chr3_4:67458758-67458777 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - chr3_4:67458770-67458789 Msa0516020:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - chr3_4:67458777-67458796 Msa0516020:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + chr3_4:67458809-67458828 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + chr3_4:67458810-67458829 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - chr3_4:67458822-67458841 Msa0516020:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - chr3_4:67458823-67458842 Msa0516020:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - chr3_4:67458910-67458929 Msa0516020:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - chr3_4:67459016-67459035 Msa0516020:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + chr3_4:67459074-67459093 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + chr3_4:67459078-67459097 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - chr3_4:67459100-67459119 Msa0516020:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG + chr3_4:67459216-67459235 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + chr3_4:67459250-67459269 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - chr3_4:67459396-67459415 Msa0516020:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - chr3_4:67459419-67459438 Msa0516020:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - chr3_4:67459450-67459469 Msa0516020:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - chr3_4:67459492-67459511 Msa0516020:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - chr3_4:67459528-67459547 Msa0516020:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - chr3_4:67459534-67459553 Msa0516020:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - chr3_4:67459618-67459637 Msa0516020:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - chr3_4:67459685-67459704 Msa0516020:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - chr3_4:67459804-67459823 Msa0516020:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - chr3_4:67459867-67459886 Msa0516020:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - chr3_4:67460060-67460079 Msa0516020:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - chr3_4:67460098-67460117 Msa0516020:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - chr3_4:67460112-67460131 Msa0516020:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + chr3_4:67460124-67460143 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - chr3_4:67460207-67460226 Msa0516020:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - chr3_4:67460279-67460298 Msa0516020:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - chr3_4:67460291-67460310 Msa0516020:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + chr3_4:67460308-67460327 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - chr3_4:67460337-67460356 Msa0516020:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - chr3_4:67460368-67460387 Msa0516020:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + chr3_4:67460407-67460426 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - chr3_4:67460423-67460442 Msa0516020:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - chr3_4:67460487-67460506 Msa0516020:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + chr3_4:67460601-67460620 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - chr3_4:67460604-67460623 Msa0516020:CDS 40.0%
AGTCAGGGCTAAAGAAATAG+CGG - chr3_4:67458555-67458574 Msa0516020:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - chr3_4:67458575-67458594 Msa0516020:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - chr3_4:67458697-67458716 Msa0516020:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - chr3_4:67458715-67458734 Msa0516020:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + chr3_4:67458757-67458776 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + chr3_4:67458758-67458777 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - chr3_4:67458770-67458789 Msa0516020:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - chr3_4:67458777-67458796 Msa0516020:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + chr3_4:67458809-67458828 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + chr3_4:67458810-67458829 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - chr3_4:67458822-67458841 Msa0516020:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - chr3_4:67458823-67458842 Msa0516020:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - chr3_4:67458910-67458929 Msa0516020:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - chr3_4:67459016-67459035 Msa0516020:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + chr3_4:67459074-67459093 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + chr3_4:67459078-67459097 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - chr3_4:67459100-67459119 Msa0516020:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG + chr3_4:67459216-67459235 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + chr3_4:67459250-67459269 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - chr3_4:67459396-67459415 Msa0516020:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - chr3_4:67459419-67459438 Msa0516020:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - chr3_4:67459450-67459469 Msa0516020:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - chr3_4:67459492-67459511 Msa0516020:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - chr3_4:67459528-67459547 Msa0516020:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - chr3_4:67459534-67459553 Msa0516020:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - chr3_4:67459618-67459637 Msa0516020:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - chr3_4:67459685-67459704 Msa0516020:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - chr3_4:67459804-67459823 Msa0516020:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - chr3_4:67459867-67459886 Msa0516020:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - chr3_4:67460060-67460079 Msa0516020:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - chr3_4:67460098-67460117 Msa0516020:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - chr3_4:67460112-67460131 Msa0516020:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + chr3_4:67460124-67460143 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - chr3_4:67460207-67460226 Msa0516020:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - chr3_4:67460279-67460298 Msa0516020:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - chr3_4:67460291-67460310 Msa0516020:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + chr3_4:67460308-67460327 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - chr3_4:67460337-67460356 Msa0516020:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - chr3_4:67460368-67460387 Msa0516020:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + chr3_4:67460407-67460426 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - chr3_4:67460423-67460442 Msa0516020:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - chr3_4:67460487-67460506 Msa0516020:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + chr3_4:67460601-67460620 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - chr3_4:67460604-67460623 Msa0516020:CDS 40.0%
CAACAAAGATGAGGCAGTCA+GGG - chr3_4:67458540-67458559 Msa0516020:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - chr3_4:67458846-67458865 Msa0516020:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + chr3_4:67458915-67458934 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + chr3_4:67458939-67458958 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - chr3_4:67458941-67458960 Msa0516020:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - chr3_4:67459015-67459034 Msa0516020:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - chr3_4:67459031-67459050 Msa0516020:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - chr3_4:67459032-67459051 Msa0516020:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + chr3_4:67459073-67459092 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + chr3_4:67459075-67459094 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - chr3_4:67459184-67459203 Msa0516020:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + chr3_4:67459213-67459232 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + chr3_4:67459251-67459270 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + chr3_4:67459263-67459282 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - chr3_4:67459261-67459280 Msa0516020:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + chr3_4:67459316-67459335 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - chr3_4:67459418-67459437 Msa0516020:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + chr3_4:67459426-67459445 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - chr3_4:67459424-67459443 Msa0516020:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - chr3_4:67459501-67459520 Msa0516020:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - chr3_4:67459572-67459591 Msa0516020:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - chr3_4:67459581-67459600 Msa0516020:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + chr3_4:67459876-67459895 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + chr3_4:67459959-67459978 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - chr3_4:67459965-67459984 Msa0516020:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - chr3_4:67459999-67460018 Msa0516020:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + chr3_4:67460063-67460082 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - chr3_4:67460097-67460116 Msa0516020:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - chr3_4:67460111-67460130 Msa0516020:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG + chr3_4:67460125-67460144 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG - chr3_4:67460122-67460141 Msa0516020:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - chr3_4:67460215-67460234 Msa0516020:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - chr3_4:67460401-67460420 Msa0516020:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + chr3_4:67460422-67460441 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + chr3_4:67460457-67460476 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - chr3_4:67460463-67460482 Msa0516020:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - chr3_4:67460509-67460528 Msa0516020:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - chr3_4:67460536-67460555 Msa0516020:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + chr3_4:67460590-67460609 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + chr3_4:67460598-67460617 None:intergenic 45.0%
CAACAAAGATGAGGCAGTCA+GGG - chr3_4:67458540-67458559 Msa0516020:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - chr3_4:67458846-67458865 Msa0516020:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + chr3_4:67458915-67458934 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + chr3_4:67458939-67458958 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - chr3_4:67458941-67458960 Msa0516020:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - chr3_4:67459015-67459034 Msa0516020:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - chr3_4:67459031-67459050 Msa0516020:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - chr3_4:67459032-67459051 Msa0516020:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + chr3_4:67459073-67459092 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + chr3_4:67459075-67459094 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - chr3_4:67459184-67459203 Msa0516020:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + chr3_4:67459213-67459232 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + chr3_4:67459251-67459270 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + chr3_4:67459263-67459282 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - chr3_4:67459261-67459280 Msa0516020:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + chr3_4:67459316-67459335 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - chr3_4:67459418-67459437 Msa0516020:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + chr3_4:67459426-67459445 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - chr3_4:67459424-67459443 Msa0516020:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - chr3_4:67459501-67459520 Msa0516020:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - chr3_4:67459572-67459591 Msa0516020:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - chr3_4:67459581-67459600 Msa0516020:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + chr3_4:67459876-67459895 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + chr3_4:67459959-67459978 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - chr3_4:67459965-67459984 Msa0516020:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - chr3_4:67459999-67460018 Msa0516020:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + chr3_4:67460063-67460082 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - chr3_4:67460097-67460116 Msa0516020:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - chr3_4:67460111-67460130 Msa0516020:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG + chr3_4:67460125-67460144 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG - chr3_4:67460122-67460141 Msa0516020:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - chr3_4:67460215-67460234 Msa0516020:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - chr3_4:67460401-67460420 Msa0516020:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + chr3_4:67460422-67460441 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + chr3_4:67460457-67460476 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - chr3_4:67460463-67460482 Msa0516020:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - chr3_4:67460509-67460528 Msa0516020:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - chr3_4:67460536-67460555 Msa0516020:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + chr3_4:67460590-67460609 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + chr3_4:67460598-67460617 None:intergenic 45.0%
GCAACAAAGATGAGGCAGTC+AGG - chr3_4:67458539-67458558 Msa0516020:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - chr3_4:67458560-67458579 Msa0516020:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - chr3_4:67458851-67458870 Msa0516020:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - chr3_4:67458940-67458959 Msa0516020:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + chr3_4:67458957-67458976 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - chr3_4:67459065-67459084 Msa0516020:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + chr3_4:67459234-67459253 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + chr3_4:67459246-67459265 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + chr3_4:67459247-67459266 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + chr3_4:67459317-67459336 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - chr3_4:67459315-67459334 Msa0516020:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + chr3_4:67459322-67459341 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - chr3_4:67459371-67459390 Msa0516020:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - chr3_4:67459567-67459586 Msa0516020:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - chr3_4:67459971-67459990 Msa0516020:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - chr3_4:67460116-67460135 Msa0516020:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - chr3_4:67460155-67460174 Msa0516020:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + chr3_4:67460243-67460262 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - chr3_4:67460250-67460269 Msa0516020:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - chr3_4:67460251-67460270 Msa0516020:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - chr3_4:67460252-67460271 Msa0516020:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - chr3_4:67460430-67460449 Msa0516020:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - chr3_4:67460447-67460466 Msa0516020:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + chr3_4:67460451-67460470 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - chr3_4:67460450-67460469 Msa0516020:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + chr3_4:67460515-67460534 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - chr3_4:67460514-67460533 Msa0516020:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + chr3_4:67460535-67460554 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - chr3_4:67460550-67460569 Msa0516020:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + chr3_4:67460554-67460573 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + chr3_4:67460565-67460584 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + chr3_4:67460578-67460597 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - chr3_4:67460611-67460630 Msa0516020:CDS 50.0%
GCAACAAAGATGAGGCAGTC+AGG - chr3_4:67458539-67458558 Msa0516020:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - chr3_4:67458560-67458579 Msa0516020:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - chr3_4:67458851-67458870 Msa0516020:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - chr3_4:67458940-67458959 Msa0516020:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + chr3_4:67458957-67458976 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - chr3_4:67459065-67459084 Msa0516020:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + chr3_4:67459234-67459253 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + chr3_4:67459246-67459265 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + chr3_4:67459247-67459266 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + chr3_4:67459317-67459336 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - chr3_4:67459315-67459334 Msa0516020:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + chr3_4:67459322-67459341 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - chr3_4:67459371-67459390 Msa0516020:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - chr3_4:67459567-67459586 Msa0516020:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - chr3_4:67459971-67459990 Msa0516020:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - chr3_4:67460116-67460135 Msa0516020:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - chr3_4:67460155-67460174 Msa0516020:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + chr3_4:67460243-67460262 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - chr3_4:67460250-67460269 Msa0516020:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - chr3_4:67460251-67460270 Msa0516020:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - chr3_4:67460252-67460271 Msa0516020:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - chr3_4:67460430-67460449 Msa0516020:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - chr3_4:67460447-67460466 Msa0516020:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + chr3_4:67460451-67460470 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - chr3_4:67460450-67460469 Msa0516020:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + chr3_4:67460515-67460534 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - chr3_4:67460514-67460533 Msa0516020:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + chr3_4:67460535-67460554 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - chr3_4:67460550-67460569 Msa0516020:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + chr3_4:67460554-67460573 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + chr3_4:67460565-67460584 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + chr3_4:67460578-67460597 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - chr3_4:67460611-67460630 Msa0516020:CDS 50.0%
! TGCAGAGGGTGCATTTCAGC+TGG - chr3_4:67458837-67458856 Msa0516020:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + chr3_4:67459064-67459083 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - chr3_4:67459327-67459346 Msa0516020:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + chr3_4:67459346-67459365 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + chr3_4:67459367-67459386 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - chr3_4:67459549-67459568 Msa0516020:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - chr3_4:67459561-67459580 Msa0516020:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - chr3_4:67459977-67459996 Msa0516020:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - chr3_4:67460224-67460243 Msa0516020:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - chr3_4:67460245-67460264 Msa0516020:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + chr3_4:67460256-67460275 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - chr3_4:67460253-67460272 Msa0516020:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - chr3_4:67460261-67460280 Msa0516020:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - chr3_4:67460262-67460281 Msa0516020:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - chr3_4:67460442-67460461 Msa0516020:CDS 55.0%
! TGCAGAGGGTGCATTTCAGC+TGG - chr3_4:67458837-67458856 Msa0516020:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + chr3_4:67459064-67459083 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - chr3_4:67459327-67459346 Msa0516020:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + chr3_4:67459346-67459365 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + chr3_4:67459367-67459386 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - chr3_4:67459549-67459568 Msa0516020:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - chr3_4:67459561-67459580 Msa0516020:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - chr3_4:67459977-67459996 Msa0516020:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - chr3_4:67460224-67460243 Msa0516020:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - chr3_4:67460245-67460264 Msa0516020:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + chr3_4:67460256-67460275 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - chr3_4:67460253-67460272 Msa0516020:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - chr3_4:67460261-67460280 Msa0516020:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - chr3_4:67460262-67460281 Msa0516020:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - chr3_4:67460442-67460461 Msa0516020:CDS 55.0%
GATGGATGCCCAGCACGGTT+TGG + chr3_4:67458952-67458971 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + chr3_4:67459199-67459218 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + chr3_4:67459302-67459321 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - chr3_4:67459305-67459324 Msa0516020:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - chr3_4:67459309-67459328 Msa0516020:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - chr3_4:67459548-67459567 Msa0516020:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + chr3_4:67459979-67459998 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - chr3_4:67459976-67459995 Msa0516020:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + chr3_4:67459992-67460011 None:intergenic 60.0%
GATGGATGCCCAGCACGGTT+TGG + chr3_4:67458952-67458971 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + chr3_4:67459199-67459218 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + chr3_4:67459302-67459321 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - chr3_4:67459305-67459324 Msa0516020:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - chr3_4:67459309-67459328 Msa0516020:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - chr3_4:67459548-67459567 Msa0516020:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + chr3_4:67459979-67459998 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - chr3_4:67459976-67459995 Msa0516020:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + chr3_4:67459992-67460011 None:intergenic 60.0%
TGTGGAGGGGCAGAAGTGGC+AGG + chr3_4:67459060-67459079 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - chr3_4:67459543-67459562 Msa0516020:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + chr3_4:67460266-67460285 None:intergenic 65.0%
TGTGGAGGGGCAGAAGTGGC+AGG + chr3_4:67459060-67459079 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - chr3_4:67459543-67459562 Msa0516020:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + chr3_4:67460266-67460285 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67458532 67460643 67458532 ID=Msa0516020;Name=Msa0516020
chr3_4 mRNA 67458532 67460643 67458532 ID=Msa0516020-mRNA-1;Parent=Msa0516020;Name=Msa0516020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|703
chr3_4 exon 67458532 67460643 67458532 ID=Msa0516020-mRNA-1:exon:17569;Parent=Msa0516020-mRNA-1
chr3_4 CDS 67458532 67460643 67458532 ID=Msa0516020-mRNA-1:cds;Parent=Msa0516020-mRNA-1
Gene Sequence

>Msa0516020

ATGGAGTGCAACAAAGATGAGGCAGTCAGGGCTAAAGAAATAGCGGAGAGGAAATTTTCTGAAAGGGAATATATTGGTGCAAAGAAGTTTGCTATCAAGGCTAAAAATTTGTATGCTGATTTGGAGGATATTTCCCAGTTTTTGACTACTATTGATATTTATATATCTGCTGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAGTACAGGAAACTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTCAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGCTTCCAACATACTACTCCAAACCGTGCTGGGCATCCATCAAATGTACCTAGTTCAAATGGTTATTATCATTTTAAGAAGAATGCAACTTCAAATGTGAGGTCTGGGAATCATAATGCTCGGGCTCCTGCCACTTCTGCCCCTCCACAGAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAAGTGCAGGACACATTATGAATATCTCAGAGTTTATTTGAATCACACTCTTCTATGTCCCAACTGTAATGAAGCTTTTGTGGCCATAGAGAGGAGTCCTCCTCCCAATGTTTTTAAGCCATCAAGTTTGCCCTCCCATCAACAGCACCAGAATTCACAACGTCATCCTGGAAGTAATAATTCAAACCTTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACCGATGGATCGTCGTCTGTTGCCGCTCAAGCTGCAAGTGTCGTGCAAAAGGCAAGTGAGAAAGTGAAGAGAGAAGGAGCACCATCAATTGCTGAATGGGAGAGGATTCAAATGTCTAAGAAGGCTGATGGTTCTATGAAGAAAAGGAAGGCAGATGATATTCGCGTTAATGGCTATCCAGGATATACGGCAAATCATTTTGCTACGGGATCTGGAGCAGCAGGTTTGGGCAGTTTCTCTGGATCAGGAAAGGCTAACTTGGAAAAAGAAAGGACTTATGGTTTTTCAGGTCTTGGAGGCAAACATTACAGCATACGAGAGTTGTCATTGTTTGAGTTACGAAACATGTTGATGGATAAGGCACGGAATGAAATTAGTAAAAAACTTGAAGAATGGAGGTTAATGGCTGAAGCTAAGATTGTCAACAAGAATAAGAGACAGAAAAACATATTCAATGACAAAACAACTGGTTCAGAGAAGTATGGAGAGTCCAATGTTAATGGTAACAAGCATTTTTCTGTTGATTCTTTACCTGTCACATCTGATGGTACAGTTAAGAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACCTGGATAGAGCTGAAAGTTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGACGATGATGATGGAATGCCTAGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTTAGAATGCGGATTAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGGACTGGCAAGCATGAAGTATCTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTCCGCATCTTTCCAGGTAAGGGGGAAGTCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAAGTGATACACAAGTATGACATGGTGGAAGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACTCCCCTTGTTAAGTTTCCTGGCTTTAGGACAGTATTTCGAAGGCACCAGGACCAGAATGAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATCACTTGCTCAGTGGCCAGGAAGCTCATAACGCTCCAATAGGTTGCCGAGAGTTGGATCCAGCAGCTACACCTTTAGACCTCCTTCAGATAGCAACAGAAGCTAATGAGGCAGCAGGTAATGTTTAG

Protein sequence

>Msa0516020

MECNKDEAVRAKEIAERKFSEREYIGAKKFAIKAKNLYADLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFQLVSEAWSLLSDKTKRLEYNQKRSLKGFQHTTPNRAGHPSNVPSSNGYYHFKKNATSNVRSGNHNARAPATSAPPQKKAETFWTICNKCRTHYEYLRVYLNHTLLCPNCNEAFVAIERSPPPNVFKPSSLPSHQQHQNSQRHPGSNNSNLQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSIAEWERIQMSKKADGSMKKRKADDIRVNGYPGYTANHFATGSGAAGLGSFSGSGKANLEKERTYGFSGLGGKHYSIRELSLFELRNMLMDKARNEISKKLEEWRLMAEAKIVNKNKRQKNIFNDKTTGSEKYGESNVNGNKHFSVDSLPVTSDGTVKKSQAYVTINVPDPDFHNFDLDRAESSFAEDQVWAAYDDDDGMPRYYARIHKVISTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEVSESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKFPGFRTVFRRHQDQNEVRRIPKEEMFRFSHQVPNHLLSGQEAHNAPIGCRELDPAATPLDLLQIATEANEAAGNV*