AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1448490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448490 MtrunA17_Chr3g0126501 94.302 702 10 2 1 673 1 701 0.0 1374
Msa1448490 MtrunA17_Chr6g0476751 42.819 745 311 15 2 680 1 696 0.0 553
Msa1448490 MtrunA17_Chr3g0132181 38.832 788 340 21 2 668 15 781 1.76e-162 488
Msa1448490 MtrunA17_Chr3g0120851 37.263 738 335 17 2 669 1 680 6.94e-151 454
Msa1448490 MtrunA17_Chr5g0447431 36.977 741 333 20 2 665 1 684 8.31e-140 425
Msa1448490 MtrunA17_Chr1g0191281 31.030 709 382 21 2 663 1 649 6.67e-96 310
Msa1448490 MtrunA17_Chr2g0286511 31.139 729 377 22 2 664 1 670 1.27e-92 308
Msa1448490 MtrunA17_Chr7g0273491 30.176 739 409 19 2 676 1 696 1.29e-92 310
Msa1448490 MtrunA17_Chr7g0273491 26.168 214 127 6 472 658 870 1079 6.93e-13 72.4
Msa1448490 MtrunA17_Chr4g0066631 31.241 717 389 18 2 669 1 662 7.38e-92 306
Msa1448490 MtrunA17_Chr4g0066631 34.188 234 105 9 467 662 730 952 3.48e-24 108
Msa1448490 MtrunA17_Chr1g0178901 34.799 273 137 8 429 663 376 645 7.22e-42 162
Msa1448490 MtrunA17_Chr1g0178901 42.661 218 100 7 2 217 1 195 9.19e-40 155
Msa1448490 MtrunA17_Chr1g0191271 53.659 123 56 1 2 123 1 123 6.88e-37 134
Msa1448490 MtrunA17_Chr5g0410601 37.339 233 110 5 464 665 322 549 4.55e-36 143
Msa1448490 MtrunA17_Chr1g0172601 34.052 232 115 6 463 663 152 376 4.72e-34 134
Msa1448490 MtrunA17_Chr5g0427371 33.891 239 139 6 1 229 1 230 6.31e-31 124
Msa1448490 MtrunA17_Chr3g0132971 31.624 234 109 6 2 229 1 189 4.76e-25 104
Msa1448490 MtrunA17_Chr8g0338141 55.556 72 31 1 2 72 1 72 1.13e-22 92.0
Msa1448490 MtrunA17_Chr4g0049941 29.502 261 154 7 1 231 1 261 9.41e-21 96.3
Msa1448490 MtrunA17_Chr8g0338161 39.437 142 75 4 83 224 2 132 1.94e-20 92.0
Msa1448490 MtrunA17_Chr8g0338171 29.146 199 101 5 499 669 1 187 3.04e-18 87.0
Msa1448490 MtrunA17_Chr2g0295361 59.091 66 27 0 66 131 38 103 2.03e-16 80.1
Msa1448490 MtrunA17_Chr2g0279591 32.824 131 87 1 1 130 1 131 1.24e-14 77.4
Msa1448490 MtrunA17_Chr2g0295821 33.735 166 72 2 2 129 1 166 1.57e-14 75.9
Msa1448490 MtrunA17_Chr1g0191291 56.452 62 27 0 2 63 1 62 2.42e-14 72.4
Msa1448490 MtrunA17_Chr2g0295831 32.370 173 71 3 2 129 1 172 1.26e-13 70.9
Msa1448490 MtrunA17_Chr4g0067741 54.545 66 30 0 66 131 36 101 1.82e-13 71.2
Msa1448490 MtrunA17_Chr2g0307061 43.836 73 41 0 56 128 99 171 1.39e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448490 AT5G53150.3 44.384 739 314 17 2 670 1 712 0.0 572
Msa1448490 AT5G53150.6 44.384 739 314 17 2 670 1 712 0.0 572
Msa1448490 AT5G53150.2 44.384 739 314 17 2 670 1 712 0.0 572
Msa1448490 AT5G53150.4 44.475 733 293 19 2 670 1 683 0.0 560
Msa1448490 AT5G53150.1 44.475 733 293 19 2 670 1 683 0.0 560
Msa1448490 AT2G25560.1 37.236 709 339 17 2 663 1 650 6.09e-131 402
Msa1448490 AT2G05230.1 32.723 764 360 19 2 669 1 706 4.00e-123 383
Msa1448490 AT2G05250.1 32.723 764 360 19 2 669 1 706 4.00e-123 383
Msa1448490 AT5G53150.5 41.788 548 252 15 2 509 1 521 7.29e-122 375
Msa1448490 AT5G37380.8 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.4 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.7 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.2 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.6 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.1 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.5 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.3 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G37380.9 38.717 421 184 10 2 360 1 409 6.83e-75 248
Msa1448490 AT5G35753.1 35.165 364 184 7 340 663 72 423 7.01e-64 218
Msa1448490 AT5G50115.1 44.664 253 128 5 425 673 227 471 2.11e-63 219
Msa1448490 AT5G50115.1 31.013 158 102 2 3 153 10 167 3.78e-15 79.3
Msa1448490 AT4G19570.1 44.534 247 111 6 2 223 1 246 1.22e-55 199
Msa1448490 AT5G37440.1 38.782 312 136 11 2 307 16 278 8.64e-53 184
Msa1448490 AT5G37750.1 42.797 236 89 8 12 245 23 214 8.79e-52 180
Msa1448490 AT4G19590.3 63.158 133 48 1 2 133 1 133 6.18e-49 176
Msa1448490 AT4G19590.2 63.158 133 48 1 2 133 1 133 1.03e-48 176
Msa1448490 AT4G19590.2 34.815 135 61 5 178 296 210 333 1.74e-11 67.0
Msa1448490 AT3G04980.2 44.444 225 99 3 2 225 1 200 2.51e-48 184
Msa1448490 AT3G04980.2 32.031 256 139 9 465 695 490 735 1.08e-30 129
Msa1448490 AT3G04980.3 44.444 225 99 3 2 225 1 200 2.51e-48 184
Msa1448490 AT3G04980.3 32.031 256 139 9 465 695 490 735 1.08e-30 129
Msa1448490 AT4G19580.1 39.831 236 105 6 2 200 1 236 1.22e-43 160
Msa1448490 AT4G19590.1 61.983 121 45 1 14 133 2 122 8.32e-42 155
Msa1448490 AT3G04980.1 43.350 203 89 3 24 225 5 182 2.68e-40 159
Msa1448490 AT3G04980.1 32.031 256 139 9 465 695 472 717 1.05e-30 129
Msa1448490 AT5G27240.1 38.393 224 108 2 2 225 1 194 7.29e-40 158
Msa1448490 AT5G27240.1 35.417 240 129 6 463 679 471 707 1.13e-37 151
Msa1448490 AT5G27240.2 38.393 224 108 2 2 225 1 194 7.29e-40 158
Msa1448490 AT5G27240.2 35.417 240 129 6 463 679 471 707 1.13e-37 151
Msa1448490 AT5G27240.3 38.393 224 108 2 2 225 1 194 7.29e-40 158
Msa1448490 AT5G27240.3 35.417 240 129 6 463 679 471 707 1.13e-37 151
Msa1448490 AT3G06340.2 38.095 231 133 5 2 225 1 228 2.65e-38 152
Msa1448490 AT3G06340.2 34.855 241 129 6 465 679 428 666 6.95e-32 132
Msa1448490 AT3G06340.4 38.095 231 133 5 2 225 1 228 2.65e-38 152
Msa1448490 AT3G06340.4 34.855 241 129 6 465 679 428 666 6.95e-32 132
Msa1448490 AT3G06340.3 38.095 231 133 5 2 225 1 228 2.65e-38 152
Msa1448490 AT3G06340.3 34.855 241 129 6 465 679 428 666 6.95e-32 132
Msa1448490 AT3G06340.1 38.095 231 133 5 2 225 1 228 2.65e-38 152
Msa1448490 AT3G06340.1 34.855 241 129 6 465 679 428 666 6.95e-32 132
Msa1448490 AT3G04960.2 37.008 254 127 9 434 658 235 484 6.78e-36 142
Msa1448490 AT3G04960.4 37.008 254 127 9 434 658 284 533 1.09e-35 142
Msa1448490 AT3G04960.1 37.008 254 127 9 434 658 287 536 2.31e-35 141
Msa1448490 AT3G04960.3 37.008 254 127 9 434 658 336 585 3.05e-35 142
Msa1448490 AT5G18750.1 33.793 290 171 6 5 281 3 284 1.16e-34 142
Msa1448490 AT5G18750.1 34.615 234 117 5 465 663 396 628 1.34e-33 138
Msa1448490 AT5G18750.1 30.603 232 121 7 464 661 656 881 2.40e-21 99.8
Msa1448490 AT2G01710.1 32.189 233 118 5 5 229 7 207 1.13e-28 117
Msa1448490 AT2G01710.2 32.189 233 118 5 5 229 51 251 2.13e-28 117
Msa1448490 AT2G35540.1 30.374 214 111 2 8 221 12 187 1.12e-25 112
Msa1448490 AT2G35540.1 30.357 224 122 6 469 662 368 587 1.53e-19 93.6
Msa1448490 AT4G27980.1 30.901 233 130 7 453 658 301 529 8.55e-25 109
Msa1448490 AT5G18740.1 30.833 240 123 5 472 669 174 412 9.10e-25 108
Msa1448490 AT4G27980.2 30.901 233 130 7 453 658 339 567 1.39e-24 109
Msa1448490 AT4G27980.3 30.901 233 130 7 453 658 338 566 1.41e-24 109
Msa1448490 AT3G05110.1 33.171 205 111 8 464 646 158 358 2.47e-23 102
Msa1448490 AT5G64360.1 30.594 219 140 6 16 230 25 235 1.28e-21 98.6
Msa1448490 AT5G18730.1 30.328 244 120 6 472 669 44 283 1.58e-21 99.4
Msa1448490 AT5G64360.5 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G64360.7 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G64360.6 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G64360.3 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G64360.2 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G64360.4 30.594 219 140 6 16 230 25 235 1.71e-21 98.6
Msa1448490 AT5G37760.1 41.606 137 50 2 14 150 79 185 1.90e-21 93.6
Msa1448490 AT5G62780.1 51.220 82 28 1 52 121 3 84 1.40e-18 85.1
Msa1448490 AT5G09540.1 28.879 232 133 6 3 230 8 211 2.20e-18 86.7
Msa1448490 AT5G50510.1 34.711 121 74 1 3 123 10 125 3.59e-15 75.9
Msa1448490 AT5G50620.1 34.711 121 74 1 3 123 10 125 3.59e-15 75.9
Msa1448490 AT3G06778.1 46.154 78 42 0 54 131 29 106 2.69e-14 73.2
Msa1448490 AT1G09260.1 35.870 92 55 2 44 134 50 138 9.11e-14 69.3
Msa1448490 AT5G49060.2 31.579 171 84 3 2 139 1 171 1.35e-12 70.1
Msa1448490 AT5G49060.1 31.579 171 84 3 2 139 1 171 1.35e-12 70.1
Msa1448490 AT1G62970.1 29.851 134 81 4 16 136 18 151 6.48e-12 69.7
Msa1448490 AT3G57340.1 43.836 73 41 0 56 128 102 174 4.09e-11 65.9
Msa1448490 AT3G57340.2 43.836 73 41 0 56 128 102 174 4.09e-11 65.9
Msa1448490 AT5G05750.1 44.118 68 38 0 61 128 108 175 7.99e-11 64.3

Find 170 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACATTTCTGCTTTATA+AGG 0.241493 tig0032218:+19944 Msa1448490:intergenic
ACTCCCCTTGTTAAGTTTCC+TGG 0.260877 tig0032218:-20269 Msa1448490:CDS
GCAGATGATATTCGCGTTAA+TGG 0.268418 tig0032218:-21177 Msa1448490:CDS
TTCTGCCCCTCCACAGAAAA+AGG 0.278721 tig0032218:-21604 Msa1448490:CDS
TTGTTAAGTTTCCTGGCTTT+AGG 0.285789 tig0032218:-20262 Msa1448490:CDS
GCAGGTTTGGGCAGTTTCTC+TGG 0.291233 tig0032218:-21108 Msa1448490:CDS
CAGGATGACGTTGTGAATTC+TGG 0.294891 tig0032218:+21409 Msa1448490:intergenic
CAACTAATCCGCATTCTAAA+TGG 0.298217 tig0032218:+20601 Msa1448490:intergenic
CACTCCAGAATGGCTGGTTT+TGG 0.313195 tig0032218:-21354 Msa1448490:CDS
TCCAACTCTCGGCAACCTAT+TGG 0.323407 tig0032218:+20119 Msa1448490:intergenic
ACAGAACCTACCCAATCTAT+TGG 0.327599 tig0032218:+20547 Msa1448490:intergenic
CTGGTTATATTCTAGTCTCT+TGG 0.331341 tig0032218:+21776 Msa1448490:intergenic
CTCTCGAAGCAACAGTGAAT+TGG 0.332588 tig0032218:-20572 Msa1448490:CDS
AATCGAAACATCTCCTCTTT+AGG 0.335882 tig0032218:+20194 Msa1448490:intergenic
CCTTTGCAGAGGACCAGGTC+TGG 0.336859 tig0032218:-20693 Msa1448490:CDS
GCTACCAAAACCAGCCATTC+TGG 0.342521 tig0032218:+21350 Msa1448490:intergenic
TTTGAACTAGGTACATTTGA+TGG 0.348433 tig0032218:+21702 Msa1448490:intergenic
GGAGTTGTCCGCATCTTTCC+AGG 0.349771 tig0032218:-20425 Msa1448490:CDS
ACTTGAAGAATGGAGGTTAA+TGG 0.359594 tig0032218:-20944 Msa1448490:CDS
AGCCTTTCAAACTCCTCTTC+TGG 0.362339 tig0032218:+21757 Msa1448490:intergenic
GGATCTGGAGCAGCAGGTTT+GGG 0.373731 tig0032218:-21120 Msa1448490:CDS
CATTTAGAATGCGGATTAGT+TGG 0.373866 tig0032218:-20600 Msa1448490:CDS
GTGAATTCTGGTGCTGTTGA+TGG 0.377846 tig0032218:+21421 Msa1448490:intergenic
GGGATCTGGAGCAGCAGGTT+TGG 0.384095 tig0032218:-21121 Msa1448490:CDS
GAATCCTCCTAACCTCATTC+TGG 0.385216 tig0032218:+20216 Msa1448490:intergenic
TTGGAGCGTTATGAGCTTCC+TGG 0.385283 tig0032218:+20138 Msa1448490:intergenic
AGGTTTGAATTATTACTTCC+AGG 0.385391 tig0032218:+21390 Msa1448490:intergenic
TGATGGGAGGGCAAACTTGA+TGG 0.385605 tig0032218:+21438 Msa1448490:intergenic
ATAGAAACTGGTCTCCTGAT+TGG 0.387089 tig0032218:-20379 Msa1448490:CDS
CTTTGCAGAGGACCAGGTCT+GGG 0.387294 tig0032218:-20692 Msa1448490:CDS
TATGGAGAGTCCAATGTTAA+TGG 0.390480 tig0032218:-20847 Msa1448490:CDS
CTCTCCCATTCAGCAATTGA+TGG 0.393875 tig0032218:+21246 Msa1448490:intergenic
AGGTCAAAATTGTGAAAATC+AGG 0.395280 tig0032218:+20733 Msa1448490:intergenic
GAACAAAGTAAGTGGAGAAA+TGG 0.401074 tig0032218:-21964 Msa1448490:CDS
GCAACTTCAAATGTGAGGTC+TGG 0.403438 tig0032218:-21654 Msa1448490:CDS
TTGGGCAGTTTCTCTGGATC+AGG 0.403555 tig0032218:-21102 Msa1448490:CDS
GTGAATTGGGCCCAATAGAT+TGG 0.406953 tig0032218:-20558 Msa1448490:CDS
TCTGGGCACTTTATAGAAAC+TGG 0.408209 tig0032218:-20391 Msa1448490:CDS
ACAACTGGTTCAGAGAAGTA+TGG 0.411674 tig0032218:-20865 Msa1448490:CDS
GATGTTTCGATTCTCTCATC+AGG 0.412444 tig0032218:-20183 Msa1448490:CDS
TCCTAACCTCATTCTGGTCC+TGG 0.413595 tig0032218:+20222 Msa1448490:intergenic
TGCAAAGAAGTTTGCTATCA+AGG 0.415023 tig0032218:-22060 Msa1448490:CDS
TAATGGCTATCCAGGATATA+CGG 0.416189 tig0032218:-21160 Msa1448490:CDS
AGCACCATCAATTGCTGAAT+GGG 0.416490 tig0032218:-21250 Msa1448490:CDS
CTATGTTACAATCAATGTTC+CGG 0.418874 tig0032218:-20758 Msa1448490:CDS
GCAACAAAGATGAGGCAGTC+AGG 0.422134 tig0032218:-22130 Msa1448490:CDS
TGGATCAGGAAAGGCTAACT+TGG 0.429304 tig0032218:-21088 Msa1448490:CDS
TGTCCGCATCTTTCCAGGTA+AGG 0.431625 tig0032218:-20420 Msa1448490:CDS
TACTTGTGTATCACTTCATC+TGG 0.431902 tig0032218:+20344 Msa1448490:intergenic
GGGAGGAGGACTCCTCTCTA+TGG 0.433642 tig0032218:+21473 Msa1448490:intergenic
GATGGATGCCCAGCACGGTT+TGG 0.435679 tig0032218:+21720 Msa1448490:intergenic
CCGCATTCTAAATGGCTTTG+TGG 0.437694 tig0032218:+20609 Msa1448490:intergenic
CGGAACATTGATTGTAACAT+AGG 0.437900 tig0032218:+20759 Msa1448490:intergenic
TCTCGAAGCAACAGTGAATT+GGG 0.438567 tig0032218:-20571 Msa1448490:CDS
TGCAGAGGGTGCATTTCAGC+TGG 0.443695 tig0032218:-21832 Msa1448490:CDS
TAGAAAGCAGTACAGGAAAC+TGG 0.447905 tig0032218:-21892 Msa1448490:CDS
TGAATTCTAGCATAATATCT+AGG 0.449645 tig0032218:+20643 Msa1448490:intergenic
AGCTGCAAGTGTCGTGCAAA+AGG 0.451148 tig0032218:-21298 Msa1448490:CDS
TTCAGCTGGTTTCAGAGGCA+TGG 0.452089 tig0032218:-21818 Msa1448490:CDS
AAATGATTTGCCGTATATCC+TGG 0.452218 tig0032218:+21150 Msa1448490:intergenic
ATTCGCGTTAATGGCTATCC+AGG 0.452896 tig0032218:-21168 Msa1448490:CDS
CACAAAAGCTTCATTACAGT+TGG 0.453452 tig0032218:+21497 Msa1448490:intergenic
CTTATTACAGATAGTCCAAA+AGG 0.455028 tig0032218:+21575 Msa1448490:intergenic
TGGCCACTGAGCAAGTGATT+AGG 0.456167 tig0032218:+20158 Msa1448490:intergenic
CAACTTCAAATGTGAGGTCT+GGG 0.460913 tig0032218:-21653 Msa1448490:CDS
TCAAATGTACCTAGTTCAAA+TGG 0.462096 tig0032218:-21699 Msa1448490:CDS
CTGATGGTTCTATGAAGAAA+AGG 0.462638 tig0032218:-21203 Msa1448490:CDS
TGAGTTACGAAACATGTTGA+TGG 0.462926 tig0032218:-20995 Msa1448490:CDS
CAGAACCTACCCAATCTATT+GGG 0.465308 tig0032218:+20548 Msa1448490:intergenic
AAAGATGCGGACAACTCCTC+TGG 0.465447 tig0032218:+20430 Msa1448490:intergenic
ATGGATTGGTATGGTATACT+TGG 0.466628 tig0032218:-21945 Msa1448490:CDS
TAATCACTTGCTCAGTGGCC+AGG 0.470311 tig0032218:-20156 Msa1448490:CDS
CACGACACTTGCAGCTTGAG+CGG 0.470563 tig0032218:+21305 Msa1448490:intergenic
GGTTCCCACTCCAGAATGGC+TGG 0.472268 tig0032218:-21360 Msa1448490:CDS
AAATTTGTATGCTGATTTGG+AGG 0.472377 tig0032218:-22033 Msa1448490:CDS
GAAGCTCATAACGCTCCAAT+AGG 0.472605 tig0032218:-20134 Msa1448490:CDS
ATGCTTGTTACCATTAACAT+TGG 0.473523 tig0032218:+20837 Msa1448490:intergenic
CACAAGGTTAGGTGGACAAA+AGG 0.475228 tig0032218:-20455 Msa1448490:intron
ATATTCAATGACAAAACAAC+TGG 0.477357 tig0032218:-20880 Msa1448490:CDS
CATACTACTCCAAACCGTGC+TGG 0.481237 tig0032218:-21729 Msa1448490:CDS
GCTACGGGATCTGGAGCAGC+AGG 0.481387 tig0032218:-21126 Msa1448490:CDS
AAGTTCCTTTGCAGAGGACC+AGG 0.482078 tig0032218:-20698 Msa1448490:CDS
TGAATTCTGGTGCTGTTGAT+GGG 0.482563 tig0032218:+21422 Msa1448490:intergenic
GGAGTATGTTCATTCCAATC+AGG 0.487114 tig0032218:+20365 Msa1448490:intergenic
TGAATTGGGCCCAATAGATT+GGG 0.488808 tig0032218:-20557 Msa1448490:intron
AGGAACTTTCAGCTCTATCC+AGG 0.489052 tig0032218:+20713 Msa1448490:intergenic
AGGTCTAAAGGTGTAGCTGC+TGG 0.492454 tig0032218:+20095 Msa1448490:intergenic
ACGAAACATGTTGATGGATA+AGG 0.495669 tig0032218:-20989 Msa1448490:CDS
CACGGTTTGGAGTAGTATGT+TGG 0.497106 tig0032218:+21733 Msa1448490:intergenic
GTCCGCATCTTTCCAGGTAA+GGG 0.498134 tig0032218:-20419 Msa1448490:CDS
GATAGCAACAGAAGCTAATG+AGG 0.502266 tig0032218:-20066 Msa1448490:CDS
GTCTGGGAATCATAATGCTC+GGG 0.503789 tig0032218:-21637 Msa1448490:CDS
CAGAATTCACAACGTCATCC+TGG 0.504825 tig0032218:-21408 Msa1448490:CDS
GGACTATCTGTAATAAGTGC+AGG 0.505271 tig0032218:-21569 Msa1448490:CDS
GACAGTATTTCGAAGGCACC+AGG 0.509786 tig0032218:-20240 Msa1448490:CDS
CAAAACCAGCCATTCTGGAG+TGG 0.511268 tig0032218:+21355 Msa1448490:intergenic
TCCAATAGGTTGCCGAGAGT+TGG 0.511728 tig0032218:-20120 Msa1448490:CDS
TGTGGAGGGGCAGAAGTGGC+AGG 0.513069 tig0032218:+21612 Msa1448490:intergenic
CATTGATTGTAACATAGGCT+TGG 0.515798 tig0032218:+20764 Msa1448490:intergenic
CGAAATACTGTCCTAAAGCC+AGG 0.516363 tig0032218:+20251 Msa1448490:intergenic
ATACTACTCCAAACCGTGCT+GGG 0.517498 tig0032218:-21728 Msa1448490:CDS
GAGCACCATCAATTGCTGAA+TGG 0.520958 tig0032218:-21251 Msa1448490:CDS
AACAGTCTCTTCATCAGCAA+AGG 0.522182 tig0032218:+21914 Msa1448490:intergenic
AGACTGTTAGAAAGCAGTAC+AGG 0.523671 tig0032218:-21899 Msa1448490:CDS
TGCATTTCAGCTGGTTTCAG+AGG 0.526061 tig0032218:-21823 Msa1448490:CDS
GCTGCTTATGACGATGATGA+TGG 0.528010 tig0032218:-20670 Msa1448490:CDS
TCTGCTGAGAACAAAGTAAG+TGG 0.530077 tig0032218:-21972 Msa1448490:CDS
CGTCATAAGCAGCCCAGACC+TGG 0.530148 tig0032218:+20680 Msa1448490:intergenic
TCTTTACCTGTCACATCTGA+TGG 0.530274 tig0032218:-20802 Msa1448490:CDS
TAGCTTCTGTTGCTATCTGA+AGG 0.531060 tig0032218:+20072 Msa1448490:intergenic
AAATTGTGAAAATCAGGATC+CGG 0.532427 tig0032218:+20739 Msa1448490:intergenic
TAATAATTCAAACCTTCAGT+GGG 0.534646 tig0032218:-21382 Msa1448490:CDS
GAGGATTCAAATGTCTAAGA+AGG 0.536968 tig0032218:-21226 Msa1448490:CDS
ACAAAAGCTTCATTACAGTT+GGG 0.539482 tig0032218:+21498 Msa1448490:intergenic
ACCAGGACCAGAATGAGGTT+AGG 0.540017 tig0032218:-20223 Msa1448490:CDS
ACAGAAGCTAATGAGGCAGC+AGG 0.543005 tig0032218:-20059 Msa1448490:intron
CATCAATTGCTGAATGGGAG+AGG 0.543526 tig0032218:-21245 Msa1448490:CDS
GCTATCTGAAGGAGGTCTAA+AGG 0.548645 tig0032218:+20083 Msa1448490:intergenic
ACAGTCTCTTCATCAGCAAA+GGG 0.551588 tig0032218:+21915 Msa1448490:intergenic
AAGTAAGTGGAGAAATGGAT+TGG 0.558705 tig0032218:-21959 Msa1448490:CDS
AAAGCAGAAATGTTCAAATG+AGG 0.559280 tig0032218:-19938 Msa1448490:CDS
CCAGACCTGGTCCTCTGCAA+AGG 0.559516 tig0032218:+20693 Msa1448490:intergenic
TTTCTGTGGAGGGGCAGAAG+TGG 0.559602 tig0032218:+21608 Msa1448490:intergenic
TGATAATAACCATTTGAACT+AGG 0.560472 tig0032218:+21690 Msa1448490:intergenic
GGTTAGGAGGATTCCTAAAG+AGG 0.561219 tig0032218:-20207 Msa1448490:CDS
CAACAAAGATGAGGCAGTCA+GGG 0.562873 tig0032218:-22129 Msa1448490:CDS
GTGGGGTTCCCACTCCAGAA+TGG 0.563354 tig0032218:-21364 Msa1448490:CDS
CAGAAATGTTCAAATGAGGA+TGG 0.565164 tig0032218:-19934 Msa1448490:CDS
AGTGGAGAAATGGATTGGTA+TGG 0.565199 tig0032218:-21954 Msa1448490:CDS
TCCGCATCTTTCCAGGTAAG+GGG 0.566183 tig0032218:-20418 Msa1448490:CDS
GACTAGAATATAACCAGAAG+AGG 0.567369 tig0032218:-21770 Msa1448490:CDS
GGTCTGGGAATCATAATGCT+CGG 0.568311 tig0032218:-21638 Msa1448490:CDS
AACCAGAAGAGGAGTTTGAA+AGG 0.568957 tig0032218:-21759 Msa1448490:CDS
AACAAGTCTTTAGGTGCAGA+GGG 0.573429 tig0032218:-21846 Msa1448490:CDS
AGCTGAAAGTTCCTTTGCAG+AGG 0.574398 tig0032218:-20704 Msa1448490:CDS
CAAATGTCTAAGAAGGCTGA+TGG 0.579017 tig0032218:-21219 Msa1448490:CDS
GCTTTAGGACAGTATTTCGA+AGG 0.582482 tig0032218:-20247 Msa1448490:CDS
ACTGTACCATCAGATGTGAC+AGG 0.585213 tig0032218:+20796 Msa1448490:intergenic
GGCAACAGACGACGATCCAT+CGG 0.586319 tig0032218:+21326 Msa1448490:intergenic
TGGAGTGGGAACCCCACTGA+AGG 0.587012 tig0032218:+21370 Msa1448490:intergenic
CTTCTGTTGCTATCTGAAGG+AGG 0.589865 tig0032218:+20075 Msa1448490:intergenic
AAACAAGTCTTTAGGTGCAG+AGG 0.591608 tig0032218:-21847 Msa1448490:CDS
ATTCTGGTGCTGTTGATGGG+AGG 0.596016 tig0032218:+21425 Msa1448490:intergenic
CAGTTTCTCTGGATCAGGAA+AGG 0.599343 tig0032218:-21097 Msa1448490:CDS
AGGACCAGAATGAGGTTAGG+AGG 0.601398 tig0032218:-20220 Msa1448490:CDS
TTCTGGTGCTGTTGATGGGA+GGG 0.601651 tig0032218:+21426 Msa1448490:intergenic
AGTGAGAAAGTGAAGAGAGA+AGG 0.603158 tig0032218:-21273 Msa1448490:CDS
GTAATAATTCAAACCTTCAG+TGG 0.605977 tig0032218:-21383 Msa1448490:CDS
AAAACCAGCCATTCTGGAGT+GGG 0.608477 tig0032218:+21356 Msa1448490:intergenic
CCACAAAGCCATTTAGAATG+CGG 0.614075 tig0032218:-20609 Msa1448490:CDS
CCGCATCTTTCCAGGTAAGG+GGG 0.621724 tig0032218:-20417 Msa1448490:CDS
AAGGCACCAGGACCAGAATG+AGG 0.626567 tig0032218:-20228 Msa1448490:CDS
GATGGAGTGCAACAAAGATG+AGG 0.628263 tig0032218:-22138 Msa1448490:CDS
TAAAGCCAGGAAACTTAACA+AGG 0.631614 tig0032218:+20264 Msa1448490:intergenic
TAGCTGCTGGATCCAACTCT+CGG 0.634962 tig0032218:+20108 Msa1448490:intergenic
ACATGTTGATGGATAAGGCA+CGG 0.636563 tig0032218:-20984 Msa1448490:CDS
TGGTTCTATGAAGAAAAGGA+AGG 0.636867 tig0032218:-21199 Msa1448490:CDS
AGTCAGGGCTAAAGAAATAG+CGG 0.640488 tig0032218:-22114 Msa1448490:CDS
CATTTGATGGATGCCCAGCA+CGG 0.640859 tig0032218:+21715 Msa1448490:intergenic
AGAATGCAACTTCAAATGTG+AGG 0.642079 tig0032218:-21659 Msa1448490:CDS
GATGATTTCAGTGAAGAGCA+AGG 0.643056 tig0032218:-20302 Msa1448490:CDS
AAGCCAGGAAACTTAACAAG+GGG 0.655417 tig0032218:+20266 Msa1448490:intergenic
AGGTGGACAAAAGGCACCAG+AGG 0.656547 tig0032218:-20446 Msa1448490:CDS
AAAGCCAGGAAACTTAACAA+GGG 0.677929 tig0032218:+20265 Msa1448490:intergenic
GTTCCTAATCACTTGCTCAG+TGG 0.678955 tig0032218:-20161 Msa1448490:CDS
ATATTATGCTAGAATTCACA+AGG 0.689430 tig0032218:-20638 Msa1448490:CDS
AATAATTCAAACCTTCAGTG+GGG 0.716457 tig0032218:-21381 Msa1448490:CDS
GATACACAAGTATGACATGG+TGG 0.719131 tig0032218:-20333 Msa1448490:CDS
GGGCTAAAGAAATAGCGGAG+AGG 0.758438 tig0032218:-22109 Msa1448490:CDS
AGTGATACACAAGTATGACA+TGG 0.781290 tig0032218:-20336 Msa1448490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTTGTATGCTGATT+TGG - tig0032218:20019-20038 Msa1448490:intron 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - tig0032218:21101-21120 Msa1448490:CDS 20.0%
!!! TTCTGTTTTTATAAAACTTG+TGG - tig0032218:21525-21544 Msa1448490:CDS 20.0%
!!! TCTGTTTTTATAAAACTTGT+GGG - tig0032218:21526-21545 Msa1448490:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - tig0032218:21584-21603 Msa1448490:CDS 20.0%
!!! TAAAAATTTGTATGCTGATT+TGG - tig0032218:20019-20038 Msa1448490:intron 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - tig0032218:21101-21120 Msa1448490:CDS 20.0%
!!! TTCTGTTTTTATAAAACTTG+TGG - tig0032218:21525-21544 Msa1448490:CDS 20.0%
!!! TCTGTTTTTATAAAACTTGT+GGG - tig0032218:21526-21545 Msa1448490:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - tig0032218:21584-21603 Msa1448490:CDS 20.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - tig0032218:19972-19991 Msa1448490:intron 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + tig0032218:20054-20073 Msa1448490:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + tig0032218:20055-20074 Msa1448490:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + tig0032218:20368-20387 Msa1448490:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - tig0032218:20673-20692 Msa1448490:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - tig0032218:21175-21194 Msa1448490:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + tig0032218:21415-21434 Msa1448490:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - tig0032218:21417-21436 Msa1448490:CDS 25.0%
!!! CTGTTTTTATAAAACTTGTG+GGG - tig0032218:21527-21546 Msa1448490:CDS 25.0%
! TTGAACATTTCTGCTTTATA+AGG + tig0032218:22114-22133 Msa1448490:intergenic 25.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - tig0032218:19972-19991 Msa1448490:intron 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + tig0032218:20054-20073 Msa1448490:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + tig0032218:20055-20074 Msa1448490:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + tig0032218:20368-20387 Msa1448490:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - tig0032218:20673-20692 Msa1448490:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - tig0032218:21175-21194 Msa1448490:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + tig0032218:21415-21434 Msa1448490:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - tig0032218:21417-21436 Msa1448490:CDS 25.0%
!!! CTGTTTTTATAAAACTTGTG+GGG - tig0032218:21527-21546 Msa1448490:CDS 25.0%
! TTGAACATTTCTGCTTTATA+AGG + tig0032218:22114-22133 Msa1448490:intergenic 25.0%
!! AAATTTGTATGCTGATTTGG+AGG - tig0032218:20022-20041 Msa1448490:intron 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + tig0032218:20202-20221 Msa1448490:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + tig0032218:20356-20375 Msa1448490:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - tig0032218:20356-20375 Msa1448490:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + tig0032218:20483-20502 Msa1448490:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + tig0032218:20560-20579 Msa1448490:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + tig0032218:20605-20624 Msa1448490:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + tig0032218:20606-20625 Msa1448490:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + tig0032218:20668-20687 Msa1448490:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - tig0032218:20672-20691 Msa1448490:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - tig0032218:20674-20693 Msa1448490:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - tig0032218:20986-21005 Msa1448490:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - tig0032218:21104-21123 Msa1448490:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + tig0032218:21221-21240 Msa1448490:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - tig0032218:21297-21316 Msa1448490:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + tig0032218:21319-21338 Msa1448490:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + tig0032218:21325-21344 Msa1448490:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - tig0032218:21324-21343 Msa1448490:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - tig0032218:21589-21608 Msa1448490:CDS 30.0%
! GAAGAACATGCATTTTGAAT+AGG - tig0032218:22070-22089 Msa1448490:CDS 30.0%
AAAGCAGAAATGTTCAAATG+AGG - tig0032218:22117-22136 Msa1448490:CDS 30.0%
!! AAATTTGTATGCTGATTTGG+AGG - tig0032218:20022-20041 Msa1448490:intron 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + tig0032218:20202-20221 Msa1448490:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + tig0032218:20356-20375 Msa1448490:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - tig0032218:20356-20375 Msa1448490:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + tig0032218:20483-20502 Msa1448490:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + tig0032218:20560-20579 Msa1448490:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + tig0032218:20605-20624 Msa1448490:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + tig0032218:20606-20625 Msa1448490:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + tig0032218:20668-20687 Msa1448490:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - tig0032218:20672-20691 Msa1448490:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - tig0032218:20674-20693 Msa1448490:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - tig0032218:20986-21005 Msa1448490:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - tig0032218:21104-21123 Msa1448490:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + tig0032218:21221-21240 Msa1448490:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - tig0032218:21297-21316 Msa1448490:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + tig0032218:21319-21338 Msa1448490:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + tig0032218:21325-21344 Msa1448490:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - tig0032218:21324-21343 Msa1448490:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - tig0032218:21589-21608 Msa1448490:CDS 30.0%
! GAAGAACATGCATTTTGAAT+AGG - tig0032218:22070-22089 Msa1448490:CDS 30.0%
AAAGCAGAAATGTTCAAATG+AGG - tig0032218:22117-22136 Msa1448490:CDS 30.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - tig0032218:19962-19981 Msa1448490:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - tig0032218:19995-20014 Msa1448490:intron 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - tig0032218:20091-20110 Msa1448490:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - tig0032218:20096-20115 Msa1448490:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - tig0032218:20110-20129 Msa1448490:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + tig0032218:20203-20222 Msa1448490:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - tig0032218:20200-20219 Msa1448490:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + tig0032218:20282-20301 Msa1448490:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - tig0032218:20285-20304 Msa1448490:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - tig0032218:20396-20415 Msa1448490:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - tig0032218:20465-20484 Msa1448490:intron 35.0%
CACAAAAGCTTCATTACAGT+TGG + tig0032218:20561-20580 Msa1448490:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - tig0032218:20559-20578 Msa1448490:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - tig0032218:20829-20848 Msa1448490:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - tig0032218:20852-20871 Msa1448490:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - tig0032218:20856-20875 Msa1448490:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - tig0032218:20895-20914 Msa1448490:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + tig0032218:20908-20927 Msa1448490:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - tig0032218:20913-20932 Msa1448490:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - tig0032218:20978-20997 Msa1448490:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - tig0032218:20995-21014 Msa1448490:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - tig0032218:21001-21020 Msa1448490:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - tig0032218:21060-21079 Msa1448490:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - tig0032218:21066-21085 Msa1448490:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - tig0032218:21111-21130 Msa1448490:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - tig0032218:21208-21227 Msa1448490:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + tig0032218:21294-21313 Msa1448490:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + tig0032218:21299-21318 Msa1448490:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + tig0032218:21457-21476 Msa1448490:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - tig0032218:21455-21474 Msa1448490:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - tig0032218:21535-21554 Msa1448490:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + tig0032218:21714-21733 Msa1448490:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - tig0032218:21719-21738 Msa1448490:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + tig0032218:21793-21812 Msa1448490:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + tig0032218:21794-21813 Msa1448490:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - tig0032218:21793-21812 Msa1448490:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + tig0032218:21864-21883 Msa1448490:intergenic 35.0%
TAAGGTTATGTGTCTTACTC+AGG + tig0032218:22036-22055 Msa1448490:intergenic 35.0%
CTTCAGAAGAACTGAACTTA+AGG + tig0032218:22054-22073 Msa1448490:intergenic 35.0%
! ATGCATTTTGAATAGGAGAG+AGG - tig0032218:22077-22096 Msa1448490:CDS 35.0%
CAGAAATGTTCAAATGAGGA+TGG - tig0032218:22121-22140 Msa1448490:CDS 35.0%
TGAGGATGGCAAACAAAAAA+TGG - tig0032218:22135-22154 Msa1448490:CDS 35.0%
GAGGATGGCAAACAAAAAAT+GGG - tig0032218:22136-22155 Msa1448490:CDS 35.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - tig0032218:19962-19981 Msa1448490:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - tig0032218:19995-20014 Msa1448490:intron 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - tig0032218:20091-20110 Msa1448490:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - tig0032218:20096-20115 Msa1448490:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - tig0032218:20110-20129 Msa1448490:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + tig0032218:20203-20222 Msa1448490:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - tig0032218:20200-20219 Msa1448490:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + tig0032218:20282-20301 Msa1448490:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - tig0032218:20285-20304 Msa1448490:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - tig0032218:20396-20415 Msa1448490:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - tig0032218:20465-20484 Msa1448490:intron 35.0%
CACAAAAGCTTCATTACAGT+TGG + tig0032218:20561-20580 Msa1448490:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - tig0032218:20559-20578 Msa1448490:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - tig0032218:20829-20848 Msa1448490:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - tig0032218:20852-20871 Msa1448490:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - tig0032218:20856-20875 Msa1448490:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - tig0032218:20895-20914 Msa1448490:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + tig0032218:20908-20927 Msa1448490:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - tig0032218:20913-20932 Msa1448490:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - tig0032218:20978-20997 Msa1448490:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - tig0032218:20995-21014 Msa1448490:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - tig0032218:21001-21020 Msa1448490:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - tig0032218:21060-21079 Msa1448490:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - tig0032218:21066-21085 Msa1448490:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - tig0032218:21111-21130 Msa1448490:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - tig0032218:21208-21227 Msa1448490:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + tig0032218:21294-21313 Msa1448490:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + tig0032218:21299-21318 Msa1448490:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + tig0032218:21457-21476 Msa1448490:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - tig0032218:21455-21474 Msa1448490:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - tig0032218:21535-21554 Msa1448490:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + tig0032218:21714-21733 Msa1448490:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - tig0032218:21719-21738 Msa1448490:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + tig0032218:21793-21812 Msa1448490:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + tig0032218:21794-21813 Msa1448490:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - tig0032218:21793-21812 Msa1448490:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + tig0032218:21864-21883 Msa1448490:intergenic 35.0%
TAAGGTTATGTGTCTTACTC+AGG + tig0032218:22036-22055 Msa1448490:intergenic 35.0%
CTTCAGAAGAACTGAACTTA+AGG + tig0032218:22054-22073 Msa1448490:intergenic 35.0%
! ATGCATTTTGAATAGGAGAG+AGG - tig0032218:22077-22096 Msa1448490:CDS 35.0%
CAGAAATGTTCAAATGAGGA+TGG - tig0032218:22121-22140 Msa1448490:CDS 35.0%
TGAGGATGGCAAACAAAAAA+TGG - tig0032218:22135-22154 Msa1448490:CDS 35.0%
GAGGATGGCAAACAAAAAAT+GGG - tig0032218:22136-22155 Msa1448490:CDS 35.0%
AGTCAGGGCTAAAGAAATAG+CGG - tig0032218:19941-19960 Msa1448490:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - tig0032218:19961-19980 Msa1448490:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - tig0032218:20083-20102 Msa1448490:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - tig0032218:20101-20120 Msa1448490:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + tig0032218:20143-20162 Msa1448490:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + tig0032218:20144-20163 Msa1448490:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - tig0032218:20156-20175 Msa1448490:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - tig0032218:20163-20182 Msa1448490:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + tig0032218:20195-20214 Msa1448490:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + tig0032218:20196-20215 Msa1448490:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - tig0032218:20208-20227 Msa1448490:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - tig0032218:20209-20228 Msa1448490:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - tig0032218:20296-20315 Msa1448490:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - tig0032218:20402-20421 Msa1448490:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + tig0032218:20460-20479 Msa1448490:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + tig0032218:20464-20483 Msa1448490:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - tig0032218:20486-20505 Msa1448490:intron 40.0%
GATGGCTTAAAAACATTGGG+AGG + tig0032218:20602-20621 Msa1448490:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + tig0032218:20636-20655 Msa1448490:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - tig0032218:20782-20801 Msa1448490:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - tig0032218:20805-20824 Msa1448490:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - tig0032218:20836-20855 Msa1448490:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - tig0032218:20878-20897 Msa1448490:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - tig0032218:20914-20933 Msa1448490:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - tig0032218:20920-20939 Msa1448490:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - tig0032218:21004-21023 Msa1448490:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - tig0032218:21071-21090 Msa1448490:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - tig0032218:21190-21209 Msa1448490:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - tig0032218:21253-21272 Msa1448490:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - tig0032218:21446-21465 Msa1448490:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - tig0032218:21484-21503 Msa1448490:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - tig0032218:21498-21517 Msa1448490:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + tig0032218:21510-21529 Msa1448490:intergenic 40.0%
ACAGAACCTACCCAATCTAT+TGG + tig0032218:21511-21530 Msa1448490:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - tig0032218:21592-21611 Msa1448490:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - tig0032218:21664-21683 Msa1448490:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - tig0032218:21676-21695 Msa1448490:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + tig0032218:21693-21712 Msa1448490:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - tig0032218:21722-21741 Msa1448490:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - tig0032218:21753-21772 Msa1448490:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + tig0032218:21792-21811 Msa1448490:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - tig0032218:21808-21827 Msa1448490:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - tig0032218:21872-21891 Msa1448490:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + tig0032218:21986-22005 Msa1448490:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - tig0032218:21989-22008 Msa1448490:CDS 40.0%
AGTCAGGGCTAAAGAAATAG+CGG - tig0032218:19941-19960 Msa1448490:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - tig0032218:19961-19980 Msa1448490:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - tig0032218:20083-20102 Msa1448490:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - tig0032218:20101-20120 Msa1448490:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + tig0032218:20143-20162 Msa1448490:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + tig0032218:20144-20163 Msa1448490:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - tig0032218:20156-20175 Msa1448490:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - tig0032218:20163-20182 Msa1448490:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + tig0032218:20195-20214 Msa1448490:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + tig0032218:20196-20215 Msa1448490:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - tig0032218:20208-20227 Msa1448490:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - tig0032218:20209-20228 Msa1448490:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - tig0032218:20296-20315 Msa1448490:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - tig0032218:20402-20421 Msa1448490:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + tig0032218:20460-20479 Msa1448490:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + tig0032218:20464-20483 Msa1448490:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - tig0032218:20486-20505 Msa1448490:intron 40.0%
GATGGCTTAAAAACATTGGG+AGG + tig0032218:20602-20621 Msa1448490:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + tig0032218:20636-20655 Msa1448490:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - tig0032218:20782-20801 Msa1448490:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - tig0032218:20805-20824 Msa1448490:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - tig0032218:20836-20855 Msa1448490:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - tig0032218:20878-20897 Msa1448490:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - tig0032218:20914-20933 Msa1448490:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - tig0032218:20920-20939 Msa1448490:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - tig0032218:21004-21023 Msa1448490:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - tig0032218:21071-21090 Msa1448490:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - tig0032218:21190-21209 Msa1448490:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - tig0032218:21253-21272 Msa1448490:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - tig0032218:21446-21465 Msa1448490:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - tig0032218:21484-21503 Msa1448490:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - tig0032218:21498-21517 Msa1448490:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + tig0032218:21510-21529 Msa1448490:intergenic 40.0%
ACAGAACCTACCCAATCTAT+TGG + tig0032218:21511-21530 Msa1448490:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - tig0032218:21592-21611 Msa1448490:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - tig0032218:21664-21683 Msa1448490:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - tig0032218:21676-21695 Msa1448490:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + tig0032218:21693-21712 Msa1448490:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - tig0032218:21722-21741 Msa1448490:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - tig0032218:21753-21772 Msa1448490:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + tig0032218:21792-21811 Msa1448490:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - tig0032218:21808-21827 Msa1448490:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - tig0032218:21872-21891 Msa1448490:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + tig0032218:21986-22005 Msa1448490:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - tig0032218:21989-22008 Msa1448490:CDS 40.0%
GATGGAGTGCAACAAAGATG+AGG - tig0032218:19917-19936 Msa1448490:CDS 45.0%
CAACAAAGATGAGGCAGTCA+GGG - tig0032218:19926-19945 Msa1448490:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - tig0032218:20232-20251 Msa1448490:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + tig0032218:20301-20320 Msa1448490:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + tig0032218:20325-20344 Msa1448490:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - tig0032218:20327-20346 Msa1448490:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - tig0032218:20401-20420 Msa1448490:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - tig0032218:20417-20436 Msa1448490:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - tig0032218:20418-20437 Msa1448490:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + tig0032218:20459-20478 Msa1448490:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + tig0032218:20461-20480 Msa1448490:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - tig0032218:20570-20589 Msa1448490:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + tig0032218:20599-20618 Msa1448490:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + tig0032218:20637-20656 Msa1448490:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + tig0032218:20649-20668 Msa1448490:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - tig0032218:20647-20666 Msa1448490:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + tig0032218:20702-20721 Msa1448490:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - tig0032218:20804-20823 Msa1448490:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + tig0032218:20812-20831 Msa1448490:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - tig0032218:20810-20829 Msa1448490:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - tig0032218:20887-20906 Msa1448490:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - tig0032218:20958-20977 Msa1448490:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - tig0032218:20967-20986 Msa1448490:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + tig0032218:21262-21281 Msa1448490:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + tig0032218:21345-21364 Msa1448490:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - tig0032218:21351-21370 Msa1448490:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - tig0032218:21385-21404 Msa1448490:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + tig0032218:21449-21468 Msa1448490:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - tig0032218:21483-21502 Msa1448490:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - tig0032218:21497-21516 Msa1448490:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - tig0032218:21600-21619 Msa1448490:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - tig0032218:21786-21805 Msa1448490:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + tig0032218:21807-21826 Msa1448490:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + tig0032218:21842-21861 Msa1448490:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - tig0032218:21848-21867 Msa1448490:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - tig0032218:21894-21913 Msa1448490:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - tig0032218:21921-21940 Msa1448490:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + tig0032218:21975-21994 Msa1448490:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + tig0032218:21983-22002 Msa1448490:intergenic 45.0%
GATGGAGTGCAACAAAGATG+AGG - tig0032218:19917-19936 Msa1448490:CDS 45.0%
CAACAAAGATGAGGCAGTCA+GGG - tig0032218:19926-19945 Msa1448490:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - tig0032218:20232-20251 Msa1448490:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + tig0032218:20301-20320 Msa1448490:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + tig0032218:20325-20344 Msa1448490:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - tig0032218:20327-20346 Msa1448490:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - tig0032218:20401-20420 Msa1448490:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - tig0032218:20417-20436 Msa1448490:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - tig0032218:20418-20437 Msa1448490:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + tig0032218:20459-20478 Msa1448490:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + tig0032218:20461-20480 Msa1448490:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - tig0032218:20570-20589 Msa1448490:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + tig0032218:20599-20618 Msa1448490:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + tig0032218:20637-20656 Msa1448490:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + tig0032218:20649-20668 Msa1448490:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - tig0032218:20647-20666 Msa1448490:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + tig0032218:20702-20721 Msa1448490:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - tig0032218:20804-20823 Msa1448490:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + tig0032218:20812-20831 Msa1448490:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - tig0032218:20810-20829 Msa1448490:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - tig0032218:20887-20906 Msa1448490:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - tig0032218:20958-20977 Msa1448490:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - tig0032218:20967-20986 Msa1448490:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + tig0032218:21262-21281 Msa1448490:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + tig0032218:21345-21364 Msa1448490:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - tig0032218:21351-21370 Msa1448490:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - tig0032218:21385-21404 Msa1448490:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + tig0032218:21449-21468 Msa1448490:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - tig0032218:21483-21502 Msa1448490:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - tig0032218:21497-21516 Msa1448490:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - tig0032218:21600-21619 Msa1448490:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - tig0032218:21786-21805 Msa1448490:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + tig0032218:21807-21826 Msa1448490:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + tig0032218:21842-21861 Msa1448490:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - tig0032218:21848-21867 Msa1448490:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - tig0032218:21894-21913 Msa1448490:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - tig0032218:21921-21940 Msa1448490:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + tig0032218:21975-21994 Msa1448490:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + tig0032218:21983-22002 Msa1448490:intergenic 45.0%
GCAACAAAGATGAGGCAGTC+AGG - tig0032218:19925-19944 Msa1448490:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - tig0032218:19946-19965 Msa1448490:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - tig0032218:20237-20256 Msa1448490:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - tig0032218:20326-20345 Msa1448490:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + tig0032218:20343-20362 Msa1448490:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - tig0032218:20451-20470 Msa1448490:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + tig0032218:20620-20639 Msa1448490:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + tig0032218:20632-20651 Msa1448490:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + tig0032218:20633-20652 Msa1448490:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + tig0032218:20703-20722 Msa1448490:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - tig0032218:20701-20720 Msa1448490:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + tig0032218:20708-20727 Msa1448490:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - tig0032218:20757-20776 Msa1448490:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - tig0032218:20953-20972 Msa1448490:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - tig0032218:21357-21376 Msa1448490:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - tig0032218:21502-21521 Msa1448490:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - tig0032218:21540-21559 Msa1448490:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + tig0032218:21628-21647 Msa1448490:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - tig0032218:21635-21654 Msa1448490:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - tig0032218:21636-21655 Msa1448490:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - tig0032218:21637-21656 Msa1448490:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - tig0032218:21815-21834 Msa1448490:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - tig0032218:21832-21851 Msa1448490:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + tig0032218:21836-21855 Msa1448490:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - tig0032218:21835-21854 Msa1448490:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + tig0032218:21900-21919 Msa1448490:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - tig0032218:21899-21918 Msa1448490:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + tig0032218:21920-21939 Msa1448490:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - tig0032218:21935-21954 Msa1448490:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + tig0032218:21939-21958 Msa1448490:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + tig0032218:21950-21969 Msa1448490:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + tig0032218:21963-21982 Msa1448490:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - tig0032218:21996-22015 Msa1448490:CDS 50.0%
GCAACAAAGATGAGGCAGTC+AGG - tig0032218:19925-19944 Msa1448490:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - tig0032218:19946-19965 Msa1448490:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - tig0032218:20237-20256 Msa1448490:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - tig0032218:20326-20345 Msa1448490:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + tig0032218:20343-20362 Msa1448490:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - tig0032218:20451-20470 Msa1448490:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + tig0032218:20620-20639 Msa1448490:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + tig0032218:20632-20651 Msa1448490:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + tig0032218:20633-20652 Msa1448490:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + tig0032218:20703-20722 Msa1448490:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - tig0032218:20701-20720 Msa1448490:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + tig0032218:20708-20727 Msa1448490:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - tig0032218:20757-20776 Msa1448490:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - tig0032218:20953-20972 Msa1448490:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - tig0032218:21357-21376 Msa1448490:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - tig0032218:21502-21521 Msa1448490:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - tig0032218:21540-21559 Msa1448490:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + tig0032218:21628-21647 Msa1448490:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - tig0032218:21635-21654 Msa1448490:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - tig0032218:21636-21655 Msa1448490:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - tig0032218:21637-21656 Msa1448490:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - tig0032218:21815-21834 Msa1448490:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - tig0032218:21832-21851 Msa1448490:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + tig0032218:21836-21855 Msa1448490:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - tig0032218:21835-21854 Msa1448490:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + tig0032218:21900-21919 Msa1448490:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - tig0032218:21899-21918 Msa1448490:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + tig0032218:21920-21939 Msa1448490:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - tig0032218:21935-21954 Msa1448490:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + tig0032218:21939-21958 Msa1448490:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + tig0032218:21950-21969 Msa1448490:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + tig0032218:21963-21982 Msa1448490:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - tig0032218:21996-22015 Msa1448490:CDS 50.0%
! TGCAGAGGGTGCATTTCAGC+TGG - tig0032218:20223-20242 Msa1448490:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + tig0032218:20450-20469 Msa1448490:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - tig0032218:20713-20732 Msa1448490:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + tig0032218:20732-20751 Msa1448490:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + tig0032218:20753-20772 Msa1448490:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - tig0032218:20935-20954 Msa1448490:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - tig0032218:20947-20966 Msa1448490:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - tig0032218:21363-21382 Msa1448490:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - tig0032218:21609-21628 Msa1448490:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - tig0032218:21630-21649 Msa1448490:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + tig0032218:21641-21660 Msa1448490:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - tig0032218:21638-21657 Msa1448490:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - tig0032218:21646-21665 Msa1448490:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - tig0032218:21647-21666 Msa1448490:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - tig0032218:21827-21846 Msa1448490:CDS 55.0%
! TGCAGAGGGTGCATTTCAGC+TGG - tig0032218:20223-20242 Msa1448490:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + tig0032218:20450-20469 Msa1448490:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - tig0032218:20713-20732 Msa1448490:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + tig0032218:20732-20751 Msa1448490:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + tig0032218:20753-20772 Msa1448490:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - tig0032218:20935-20954 Msa1448490:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - tig0032218:20947-20966 Msa1448490:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - tig0032218:21363-21382 Msa1448490:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - tig0032218:21609-21628 Msa1448490:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - tig0032218:21630-21649 Msa1448490:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + tig0032218:21641-21660 Msa1448490:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - tig0032218:21638-21657 Msa1448490:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - tig0032218:21646-21665 Msa1448490:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - tig0032218:21647-21666 Msa1448490:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - tig0032218:21827-21846 Msa1448490:CDS 55.0%
GATGGATGCCCAGCACGGTT+TGG + tig0032218:20338-20357 Msa1448490:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + tig0032218:20585-20604 Msa1448490:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + tig0032218:20688-20707 Msa1448490:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - tig0032218:20691-20710 Msa1448490:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - tig0032218:20695-20714 Msa1448490:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - tig0032218:20934-20953 Msa1448490:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + tig0032218:21365-21384 Msa1448490:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - tig0032218:21362-21381 Msa1448490:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + tig0032218:21378-21397 Msa1448490:intergenic 60.0%
GATGGATGCCCAGCACGGTT+TGG + tig0032218:20338-20357 Msa1448490:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + tig0032218:20585-20604 Msa1448490:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + tig0032218:20688-20707 Msa1448490:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - tig0032218:20691-20710 Msa1448490:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - tig0032218:20695-20714 Msa1448490:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - tig0032218:20934-20953 Msa1448490:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + tig0032218:21365-21384 Msa1448490:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - tig0032218:21362-21381 Msa1448490:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + tig0032218:21378-21397 Msa1448490:intergenic 60.0%
TGTGGAGGGGCAGAAGTGGC+AGG + tig0032218:20446-20465 Msa1448490:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - tig0032218:20929-20948 Msa1448490:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + tig0032218:21651-21670 Msa1448490:intergenic 65.0%
TGTGGAGGGGCAGAAGTGGC+AGG + tig0032218:20446-20465 Msa1448490:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - tig0032218:20929-20948 Msa1448490:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + tig0032218:21651-21670 Msa1448490:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0032218 gene 19915 22162 19915 ID=Msa1448490;Name=Msa1448490
tig0032218 mRNA 19915 22162 19915 ID=Msa1448490-mRNA-1;Parent=Msa1448490;Name=Msa1448490-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|695
tig0032218 exon 20558 22162 20558 ID=Msa1448490-mRNA-1:exon:16433;Parent=Msa1448490-mRNA-1
tig0032218 exon 20060 20471 20060 ID=Msa1448490-mRNA-1:exon:16432;Parent=Msa1448490-mRNA-1
tig0032218 exon 19915 19985 19915 ID=Msa1448490-mRNA-1:exon:16431;Parent=Msa1448490-mRNA-1
tig0032218 CDS 20558 22162 20558 ID=Msa1448490-mRNA-1:cds;Parent=Msa1448490-mRNA-1
tig0032218 CDS 20060 20471 20060 ID=Msa1448490-mRNA-1:cds;Parent=Msa1448490-mRNA-1
tig0032218 CDS 19915 19985 19915 ID=Msa1448490-mRNA-1:cds;Parent=Msa1448490-mRNA-1
Gene Sequence

>Msa1448490

ATGATGGAGTGCAACAAAGATGAGGCAGTCAGGGCTAAAGAAATAGCGGAGAGGAAATTTTCTGAAAGGGAATATATTGGTGCAAAGAAGTTTGCTATCAAGGCTAAAAATTTGTATGCTGATTTGGAGGATATTTCCCAGTTTTTGACTACTATTGATATTTATATATCTGCTGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAGTACAGGAAACTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTCAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGCTTCCAACATACTACTCCAAACCGTGCTGGGCATCCATCAAATGTACCTAGTTCAAATGGTTATTATCATTTTAAGAAGAATGCAACTTCAAATGTGAGGTCTGGGAATCATAATGCTCGGGCTCCTGCCACTTCTGCCCCTCCACAGAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAAGTGCAGGACACATTATGAATATCTCAGAGTTTATTTGAATCACACTCTTCTATGTCCCAACTGTAATGAAGCTTTTGTGGCCATAGAGAGGAGTCCTCCTCCCAATGTTTTTAAGCCATCAAGTTTGCCCTCCCATCAACAGCACCAGAATTCACAACGTCATCCTGGAAGTAATAATTCAAACCTTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACCGATGGATCGTCGTCTGTTGCCGCTCAAGCTGCAAGTGTCGTGCAAAAGGCAAGTGAGAAAGTGAAGAGAGAAGGAGCACCATCAATTGCTGAATGGGAGAGGATTCAAATGTCTAAGAAGGCTGATGGTTCTATGAAGAAAAGGAAGGCAGATGATATTCGCGTTAATGGCTATCCAGGATATACGGCAAATCATTTTGCTACGGGATCTGGAGCAGCAGGTTTGGGCAGTTTCTCTGGATCAGGAAAGGCTAACTTGGAAAAAGAAAGGACTTATGGTTTTTCAGGTCTTGGAGGCAAACATTACAGCATACGAGAGTTGTCATTGTTTGAGTTACGAAACATGTTGATGGATAAGGCACGGAATGAAATTAGTAAAAAACTTGAAGAATGGAGGTTAATGGCTGAAGCTAAGATTGTCAACAAGAATAAGAGACAGAAAAACATATTCAATGACAAAACAACTGGTTCAGAGAAGTATGGAGAGTCCAATGTTAATGGTAACAAGCATTTTTCTGTTGATTCTTTACCTGTCACATCTGATGGTACAGTTAAGAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACCTGGATAGAGCTGAAAGTTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGACGATGATGATGGAATGCCTAGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTTAGAATGCGGATTAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTCCGCATCTTTCCAGGTAAGGGGGAAGTCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAAGTGATACACAAGTATGACATGGTGGAAGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACTCCCCTTGTTAAGTTTCCTGGCTTTAGGACAGTATTTCGAAGGCACCAGGACCAGAATGAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATCACTTGCTCAGTGGCCAGGAAGCTCATAACGCTCCAATAGGTTGCCGAGAGTTGGATCCAGCAGCTACACCTTTAGACCTCCTTCAGATAGCAACAGAAGCTAATGAGGCAGCAGGAGAGAGGATGCTTCAAAACCTTATAAAGCAGAAATGTTCAAATGAGGATGGCAAACAAAAAATGGGATAG

Protein sequence

>Msa1448490

MMECNKDEAVRAKEIAERKFSEREYIGAKKFAIKAKNLYADLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFQLVSEAWSLLSDKTKRLEYNQKRSLKGFQHTTPNRAGHPSNVPSSNGYYHFKKNATSNVRSGNHNARAPATSAPPQKKAETFWTICNKCRTHYEYLRVYLNHTLLCPNCNEAFVAIERSPPPNVFKPSSLPSHQQHQNSQRHPGSNNSNLQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSIAEWERIQMSKKADGSMKKRKADDIRVNGYPGYTANHFATGSGAAGLGSFSGSGKANLEKERTYGFSGLGGKHYSIRELSLFELRNMLMDKARNEISKKLEEWRLMAEAKIVNKNKRQKNIFNDKTTGSEKYGESNVNGNKHFSVDSLPVTSDGTVKKSQAYVTINVPDPDFHNFDLDRAESSFAEDQVWAAYDDDDGMPRYYARIHKVISTKPFRMRISWLNSRSNSELGPIDWVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKFPGFRTVFRRHQDQNEVRRIPKEEMFRFSHQVPNHLLSGQEAHNAPIGCRELDPAATPLDLLQIATEANEAAGERMLQNLIKQKCSNEDGKQKMG*