AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376020 MtrunA17_Chr3g0126501 98.435 703 10 1 1 703 2 703 0.0 1450
Msa0376020 MtrunA17_Chr6g0476751 45.170 735 320 13 1 698 1 689 0.0 600
Msa0376020 MtrunA17_Chr3g0132181 40.990 788 352 20 1 696 15 781 0.0 538
Msa0376020 MtrunA17_Chr3g0120851 39.024 738 351 17 1 697 1 680 4.77e-166 493
Msa0376020 MtrunA17_Chr5g0447431 38.784 740 350 20 1 693 1 684 8.08e-154 462
Msa0376020 MtrunA17_Chr1g0191281 31.690 710 405 20 1 691 1 649 1.08e-105 336
Msa0376020 MtrunA17_Chr7g0273491 31.671 742 425 19 1 703 1 699 1.43e-104 343
Msa0376020 MtrunA17_Chr7g0273491 28.378 222 141 6 471 686 870 1079 3.12e-18 89.7
Msa0376020 MtrunA17_Chr4g0066631 32.312 718 409 17 1 697 1 662 3.01e-102 334
Msa0376020 MtrunA17_Chr4g0066631 36.864 236 125 10 466 690 730 952 1.39e-30 129
Msa0376020 MtrunA17_Chr2g0286511 32.187 727 401 22 1 692 1 670 3.82e-101 331
Msa0376020 MtrunA17_Chr2g0286511 31.646 237 138 8 463 686 714 939 1.60e-23 106
Msa0376020 MtrunA17_Chr1g0178901 36.996 273 160 7 428 691 376 645 2.97e-51 189
Msa0376020 MtrunA17_Chr1g0178901 41.964 224 105 7 1 222 1 201 7.93e-40 155
Msa0376020 MtrunA17_Chr5g0410601 41.631 233 129 3 463 693 322 549 5.83e-46 172
Msa0376020 MtrunA17_Chr1g0172601 37.339 233 135 6 462 691 152 376 5.80e-44 162
Msa0376020 MtrunA17_Chr1g0191271 53.659 123 56 1 1 122 1 123 2.87e-37 135
Msa0376020 MtrunA17_Chr5g0427371 33.613 238 139 6 1 228 2 230 3.41e-30 122
Msa0376020 MtrunA17_Chr8g0338171 33.000 200 121 4 498 697 1 187 1.50e-27 114
Msa0376020 MtrunA17_Chr3g0132971 31.624 234 109 6 1 228 1 189 3.73e-25 104
Msa0376020 MtrunA17_Chr8g0338141 55.556 72 31 1 1 71 1 72 6.97e-23 92.8
Msa0376020 MtrunA17_Chr4g0049941 29.572 257 151 7 4 230 5 261 1.01e-20 96.3
Msa0376020 MtrunA17_Chr8g0338161 39.437 142 75 4 82 223 2 132 1.81e-20 92.0
Msa0376020 MtrunA17_Chr2g0295361 59.091 66 27 0 65 130 38 103 2.06e-16 80.1
Msa0376020 MtrunA17_Chr2g0279591 33.071 127 84 1 4 129 5 131 1.12e-14 77.4
Msa0376020 MtrunA17_Chr2g0295821 33.735 166 72 2 1 128 1 166 1.28e-14 76.3
Msa0376020 MtrunA17_Chr1g0191291 56.452 62 27 0 1 62 1 62 2.02e-14 72.4
Msa0376020 MtrunA17_Chr2g0295831 32.370 173 71 3 1 128 1 172 1.19e-13 71.2
Msa0376020 MtrunA17_Chr4g0067741 54.545 66 30 0 65 130 36 101 1.86e-13 71.2
Msa0376020 MtrunA17_Chr2g0307061 43.836 73 41 0 55 127 99 171 1.34e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376020 AT5G53150.3 46.371 744 331 16 1 703 1 717 0.0 628
Msa0376020 AT5G53150.6 46.371 744 331 16 1 703 1 717 0.0 628
Msa0376020 AT5G53150.2 46.371 744 331 16 1 703 1 717 0.0 628
Msa0376020 AT5G53150.4 46.477 738 310 18 1 703 1 688 0.0 616
Msa0376020 AT5G53150.1 46.477 738 310 18 1 703 1 688 0.0 616
Msa0376020 AT2G25560.1 39.210 709 354 16 1 691 1 650 6.22e-146 441
Msa0376020 AT2G05230.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0376020 AT2G05250.1 34.293 764 377 19 1 697 1 706 2.60e-136 417
Msa0376020 AT5G53150.5 41.788 548 252 15 1 508 1 521 8.96e-122 375
Msa0376020 AT5G35753.1 38.462 364 201 7 339 691 72 423 8.20e-77 253
Msa0376020 AT5G37380.8 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.4 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.7 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.2 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.6 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.1 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.5 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.3 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G37380.9 38.717 421 184 10 1 359 1 409 7.00e-75 248
Msa0376020 AT5G50115.1 41.935 279 127 4 424 701 227 471 8.82e-66 225
Msa0376020 AT5G50115.1 31.013 158 102 2 2 152 10 167 3.56e-15 79.3
Msa0376020 AT4G19570.1 44.534 247 111 6 1 222 1 246 1.33e-55 199
Msa0376020 AT5G37440.1 38.782 312 136 11 1 306 16 278 9.64e-53 184
Msa0376020 AT5G37750.1 42.797 236 89 8 11 244 23 214 1.03e-51 179
Msa0376020 AT4G19590.3 63.158 133 48 1 1 132 1 133 5.30e-49 176
Msa0376020 AT4G19590.2 63.158 133 48 1 1 132 1 133 7.54e-49 176
Msa0376020 AT4G19590.2 32.836 134 74 4 177 294 210 343 1.86e-11 67.0
Msa0376020 AT3G04980.2 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0376020 AT3G04980.2 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0376020 AT3G04980.2 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0376020 AT3G04980.3 44.444 225 99 3 1 224 1 200 3.24e-48 184
Msa0376020 AT3G04980.3 33.906 233 140 7 464 692 490 712 6.71e-34 140
Msa0376020 AT3G04980.3 29.183 257 153 10 445 692 946 1182 3.38e-17 87.0
Msa0376020 AT4G19580.1 41.350 237 100 7 1 199 1 236 9.48e-44 160
Msa0376020 AT4G19590.1 61.983 121 45 1 13 132 2 122 7.56e-42 155
Msa0376020 AT3G04960.2 39.245 265 135 10 433 686 235 484 1.41e-41 159
Msa0376020 AT3G04960.4 39.245 265 135 10 433 686 284 533 2.64e-41 159
Msa0376020 AT5G18750.1 37.607 234 139 4 464 691 396 628 2.74e-41 162
Msa0376020 AT5G18750.1 33.793 290 171 6 4 280 3 284 9.53e-35 142
Msa0376020 AT5G18750.1 34.052 232 142 7 463 689 656 881 6.86e-30 127
Msa0376020 AT3G04960.1 39.245 265 135 10 433 686 287 536 4.65e-41 158
Msa0376020 AT3G04960.3 39.245 265 135 10 433 686 336 585 6.98e-41 159
Msa0376020 AT5G27240.1 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0376020 AT5G27240.1 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0376020 AT5G27240.1 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0376020 AT5G27240.2 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0376020 AT5G27240.2 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0376020 AT5G27240.2 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0376020 AT5G27240.3 38.197 233 131 6 462 692 471 692 2.74e-40 159
Msa0376020 AT5G27240.3 38.393 224 108 2 1 224 1 194 8.25e-40 158
Msa0376020 AT5G27240.3 33.333 195 107 7 473 661 895 1072 2.53e-18 90.5
Msa0376020 AT3G04980.1 43.350 203 89 3 23 224 5 182 3.45e-40 159
Msa0376020 AT3G04980.1 33.906 233 140 7 464 692 472 694 7.05e-34 139
Msa0376020 AT3G04980.1 29.183 257 153 10 445 692 928 1164 3.57e-17 86.7
Msa0376020 AT3G06340.2 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0376020 AT3G06340.2 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0376020 AT3G06340.4 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0376020 AT3G06340.4 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0376020 AT3G06340.3 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0376020 AT3G06340.3 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0376020 AT3G06340.1 38.095 231 133 5 1 224 1 228 2.12e-38 152
Msa0376020 AT3G06340.1 36.957 230 137 4 464 691 428 651 3.33e-35 142
Msa0376020 AT5G18740.1 32.365 241 147 4 471 697 174 412 3.48e-33 133
Msa0376020 AT4G27980.1 33.333 240 144 9 452 686 301 529 4.86e-30 125
Msa0376020 AT4G27980.2 34.071 226 136 8 463 686 353 567 7.13e-30 125
Msa0376020 AT4G27980.3 32.500 240 146 8 452 686 338 566 7.97e-30 125
Msa0376020 AT2G01710.1 32.189 233 118 5 4 228 7 207 8.32e-29 117
Msa0376020 AT2G01710.2 32.189 233 118 5 4 228 51 251 1.57e-28 118
Msa0376020 AT2G35540.1 33.480 227 140 6 468 690 368 587 6.59e-28 119
Msa0376020 AT2G35540.1 30.374 214 111 2 7 220 12 187 1.61e-25 112
Msa0376020 AT5G18730.1 31.818 242 148 6 471 697 44 283 1.42e-27 118
Msa0376020 AT5G18730.1 27.586 232 137 9 483 691 304 527 1.05e-12 71.6
Msa0376020 AT3G05110.1 33.488 215 126 6 463 674 158 358 1.90e-27 115
Msa0376020 AT5G64360.1 30.594 219 140 6 15 229 25 235 1.33e-21 98.6
Msa0376020 AT5G37760.1 41.606 137 50 2 13 149 79 185 1.52e-21 94.0
Msa0376020 AT5G64360.5 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G64360.7 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G64360.6 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G64360.3 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G64360.2 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G64360.4 30.594 219 140 6 15 229 25 235 1.85e-21 98.6
Msa0376020 AT5G62780.1 51.220 82 28 1 51 120 3 84 1.53e-18 85.1
Msa0376020 AT5G09540.1 28.879 232 133 6 2 229 8 211 1.87e-18 86.7
Msa0376020 AT5G50510.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0376020 AT5G50620.1 34.711 121 74 1 2 122 10 125 3.97e-15 75.9
Msa0376020 AT3G06778.1 46.154 78 42 0 53 130 29 106 2.78e-14 73.2
Msa0376020 AT1G09260.1 35.870 92 55 2 43 133 50 138 8.88e-14 69.3
Msa0376020 AT5G18720.3 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0376020 AT5G18720.2 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0376020 AT5G18720.1 27.426 237 131 9 483 690 114 338 1.41e-13 73.2
Msa0376020 AT5G49060.2 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0376020 AT5G49060.1 31.579 171 84 3 1 138 1 171 1.31e-12 70.5
Msa0376020 AT1G62970.1 29.851 134 81 4 15 135 18 151 6.22e-12 69.7
Msa0376020 AT3G57340.1 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0376020 AT3G57340.2 43.836 73 41 0 55 127 102 174 4.02e-11 65.9
Msa0376020 AT5G05750.1 44.118 68 38 0 60 127 108 175 7.89e-11 64.3

Find 171 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAACTTGTGGGGATTTC+AGG 0.135241 3_1:-76054146 Msa0376020:CDS
ACTCCCCTTGTTAAGTTTCC+TGG 0.260877 3_1:-76053895 Msa0376020:CDS
GCAGATGATATTCGCGTTAA+TGG 0.268418 3_1:-76054804 Msa0376020:CDS
TTCTGCCCCTCCACAGAAAA+AGG 0.278721 3_1:-76055231 Msa0376020:CDS
TTGTTAAGTTTCCTGGCTTT+AGG 0.285789 3_1:-76053888 Msa0376020:CDS
GCAGGTTTGGGCAGTTTCTC+TGG 0.291233 3_1:-76054735 Msa0376020:CDS
CAGGATGACGTTGTGAATTC+TGG 0.294891 3_1:+76055036 None:intergenic
CAACTAATCCGCATTCTAAA+TGG 0.298217 3_1:+76054228 None:intergenic
CCAATAGATTGGGTAGGTTC+TGG 0.312215 3_1:-76054174 Msa0376020:CDS
CACTCCAGAATGGCTGGTTT+TGG 0.313195 3_1:-76054981 Msa0376020:CDS
CCAGAACCTACCCAATCTAT+TGG 0.320518 3_1:+76054174 None:intergenic
TCCAACTCTCGGCAACCTAT+TGG 0.323407 3_1:+76053745 None:intergenic
CTGGTTATATTCTAGTCTCT+TGG 0.331341 3_1:+76055403 None:intergenic
CTCTCGAAGCAACAGTGAAT+TGG 0.332588 3_1:-76054199 Msa0376020:CDS
AATCGAAACATCTCCTCTTT+AGG 0.335882 3_1:+76053820 None:intergenic
CCTTTGCAGAGGACCAGGTC+TGG 0.336859 3_1:-76054320 Msa0376020:CDS
GCTACCAAAACCAGCCATTC+TGG 0.342521 3_1:+76054977 None:intergenic
TTTGAACTAGGTACATTTGA+TGG 0.348433 3_1:+76055329 None:intergenic
GGAGTTGTCCGCATCTTTCC+AGG 0.349771 3_1:-76054051 Msa0376020:CDS
ACTTGAAGAATGGAGGTTAA+TGG 0.359594 3_1:-76054571 Msa0376020:CDS
AGCCTTTCAAACTCCTCTTC+TGG 0.362339 3_1:+76055384 None:intergenic
GGATCTGGAGCAGCAGGTTT+GGG 0.373731 3_1:-76054747 Msa0376020:CDS
CATTTAGAATGCGGATTAGT+TGG 0.373866 3_1:-76054227 Msa0376020:CDS
GTGAATTCTGGTGCTGTTGA+TGG 0.377846 3_1:+76055048 None:intergenic
GGGATCTGGAGCAGCAGGTT+TGG 0.384095 3_1:-76054748 Msa0376020:CDS
GAATCCTCCTAACCTCATTC+TGG 0.385216 3_1:+76053842 None:intergenic
TTGGAGCGTTATGAGCTTCC+TGG 0.385283 3_1:+76053764 None:intergenic
AGGTTTGAATTATTACTTCC+AGG 0.385391 3_1:+76055017 None:intergenic
TGATGGGAGGGCAAACTTGA+TGG 0.385605 3_1:+76055065 None:intergenic
ATAGAAACTGGTCTCCTGAT+TGG 0.387089 3_1:-76054005 Msa0376020:CDS
CTTTGCAGAGGACCAGGTCT+GGG 0.387294 3_1:-76054319 Msa0376020:CDS
TATGGAGAGTCCAATGTTAA+TGG 0.390480 3_1:-76054474 Msa0376020:CDS
CTCTCCCATTCAGCAATTGA+TGG 0.393875 3_1:+76054873 None:intergenic
AGGTCAAAATTGTGAAAATC+AGG 0.395280 3_1:+76054360 None:intergenic
GAACAAAGTAAGTGGAGAAA+TGG 0.401074 3_1:-76055591 Msa0376020:CDS
GCAACTTCAAATGTGAGGTC+TGG 0.403438 3_1:-76055281 Msa0376020:CDS
TTGGGCAGTTTCTCTGGATC+AGG 0.403555 3_1:-76054729 Msa0376020:CDS
GTGAATTGGGCCCAATAGAT+TGG 0.406953 3_1:-76054185 Msa0376020:CDS
TCTGGGCACTTTATAGAAAC+TGG 0.408209 3_1:-76054017 Msa0376020:CDS
ACAACTGGTTCAGAGAAGTA+TGG 0.411674 3_1:-76054492 Msa0376020:CDS
GATGTTTCGATTCTCTCATC+AGG 0.412444 3_1:-76053809 Msa0376020:CDS
TCCTAACCTCATTCTGGTCC+TGG 0.413595 3_1:+76053848 None:intergenic
TGCAAAGAAGTTTGCTATCA+AGG 0.415023 3_1:-76055687 Msa0376020:CDS
TAATGGCTATCCAGGATATA+CGG 0.416189 3_1:-76054787 Msa0376020:CDS
AGCACCATCAATTGCTGAAT+GGG 0.416490 3_1:-76054877 Msa0376020:CDS
CTATGTTACAATCAATGTTC+CGG 0.418874 3_1:-76054385 Msa0376020:CDS
GCAACAAAGATGAGGCAGTC+AGG 0.422134 3_1:-76055757 Msa0376020:CDS
TGGATCAGGAAAGGCTAACT+TGG 0.429304 3_1:-76054715 Msa0376020:CDS
TGTCCGCATCTTTCCAGGTA+AGG 0.431625 3_1:-76054046 Msa0376020:CDS
TACTTGTGTATCACTTCATC+TGG 0.431902 3_1:+76053970 None:intergenic
GGGAGGAGGACTCCTCTCTA+TGG 0.433642 3_1:+76055100 None:intergenic
GATGGATGCCCAGCACGGTT+TGG 0.435679 3_1:+76055347 None:intergenic
CCGCATTCTAAATGGCTTTG+TGG 0.437694 3_1:+76054236 None:intergenic
CGGAACATTGATTGTAACAT+AGG 0.437900 3_1:+76054386 None:intergenic
TCTCGAAGCAACAGTGAATT+GGG 0.438567 3_1:-76054198 Msa0376020:CDS
TGCAGAGGGTGCATTTCAGC+TGG 0.443695 3_1:-76055459 Msa0376020:CDS
TAGAAAGCAGTACAGGAAAC+TGG 0.447905 3_1:-76055519 Msa0376020:CDS
TGAATTCTAGCATAATATCT+AGG 0.449645 3_1:+76054270 None:intergenic
AGCTGCAAGTGTCGTGCAAA+AGG 0.451148 3_1:-76054925 Msa0376020:CDS
TTCAGCTGGTTTCAGAGGCA+TGG 0.452089 3_1:-76055445 Msa0376020:CDS
AAATGATTTGCCGTATATCC+TGG 0.452218 3_1:+76054777 None:intergenic
ATTCGCGTTAATGGCTATCC+AGG 0.452896 3_1:-76054795 Msa0376020:CDS
CACAAAAGCTTCATTACAGT+TGG 0.453452 3_1:+76055124 None:intergenic
CTTATTACAGATAGTCCAAA+AGG 0.455028 3_1:+76055202 None:intergenic
TGGCCACTGAGCAAGTGATT+AGG 0.456167 3_1:+76053784 None:intergenic
CAGAACCTACCCAATCTATT+GGG 0.457508 3_1:+76054175 None:intergenic
CAACTTCAAATGTGAGGTCT+GGG 0.460913 3_1:-76055280 Msa0376020:CDS
TCAAATGTACCTAGTTCAAA+TGG 0.462096 3_1:-76055326 Msa0376020:CDS
CTGATGGTTCTATGAAGAAA+AGG 0.462638 3_1:-76054830 Msa0376020:CDS
TGAGTTACGAAACATGTTGA+TGG 0.462926 3_1:-76054622 Msa0376020:CDS
AAAGATGCGGACAACTCCTC+TGG 0.465447 3_1:+76054056 None:intergenic
ATGGATTGGTATGGTATACT+TGG 0.466628 3_1:-76055572 Msa0376020:CDS
TAATCACTTGCTCAGTGGCC+AGG 0.470311 3_1:-76053782 Msa0376020:CDS
CACGACACTTGCAGCTTGAG+CGG 0.470563 3_1:+76054932 None:intergenic
GGTTCCCACTCCAGAATGGC+TGG 0.472268 3_1:-76054987 Msa0376020:CDS
AAATTTGTATGCTGATTTGG+AGG 0.472377 3_1:-76055660 Msa0376020:CDS
GAAGCTCATAACGCTCCAAT+AGG 0.472605 3_1:-76053760 Msa0376020:CDS
ATGCTTGTTACCATTAACAT+TGG 0.473523 3_1:+76054464 None:intergenic
CACAAGGTTAGGTGGACAAA+AGG 0.475228 3_1:-76054081 Msa0376020:CDS
ATATTCAATGACAAAACAAC+TGG 0.477357 3_1:-76054507 Msa0376020:CDS
CATACTACTCCAAACCGTGC+TGG 0.481237 3_1:-76055356 Msa0376020:CDS
GCTACGGGATCTGGAGCAGC+AGG 0.481387 3_1:-76054753 Msa0376020:CDS
AAGTTCCTTTGCAGAGGACC+AGG 0.482078 3_1:-76054325 Msa0376020:CDS
TGAATTCTGGTGCTGTTGAT+GGG 0.482563 3_1:+76055049 None:intergenic
GGAGTATGTTCATTCCAATC+AGG 0.487114 3_1:+76053991 None:intergenic
TGAATTGGGCCCAATAGATT+GGG 0.488808 3_1:-76054184 Msa0376020:CDS
AGGAACTTTCAGCTCTATCC+AGG 0.489052 3_1:+76054340 None:intergenic
AGGTCTAAAGGTGTAGCTGC+TGG 0.492454 3_1:+76053721 None:intergenic
ACGAAACATGTTGATGGATA+AGG 0.495669 3_1:-76054616 Msa0376020:CDS
CACGGTTTGGAGTAGTATGT+TGG 0.497106 3_1:+76055360 None:intergenic
GTCCGCATCTTTCCAGGTAA+GGG 0.498134 3_1:-76054045 Msa0376020:CDS
GATAGCAACAGAAGCTAATG+AGG 0.502266 3_1:-76053692 Msa0376020:CDS
GTCTGGGAATCATAATGCTC+GGG 0.503789 3_1:-76055264 Msa0376020:CDS
CAGAATTCACAACGTCATCC+TGG 0.504825 3_1:-76055035 Msa0376020:CDS
GGACTATCTGTAATAAGTGC+AGG 0.505271 3_1:-76055196 Msa0376020:CDS
GACAGTATTTCGAAGGCACC+AGG 0.509786 3_1:-76053866 Msa0376020:CDS
CAAAACCAGCCATTCTGGAG+TGG 0.511268 3_1:+76054982 None:intergenic
TCCAATAGGTTGCCGAGAGT+TGG 0.511728 3_1:-76053746 Msa0376020:CDS
TGTGGAGGGGCAGAAGTGGC+AGG 0.513069 3_1:+76055239 None:intergenic
CATTGATTGTAACATAGGCT+TGG 0.515798 3_1:+76054391 None:intergenic
CGAAATACTGTCCTAAAGCC+AGG 0.516363 3_1:+76053877 None:intergenic
ATACTACTCCAAACCGTGCT+GGG 0.517498 3_1:-76055355 Msa0376020:CDS
GAGCACCATCAATTGCTGAA+TGG 0.520958 3_1:-76054878 Msa0376020:CDS
AACAGTCTCTTCATCAGCAA+AGG 0.522182 3_1:+76055541 None:intergenic
AGACTGTTAGAAAGCAGTAC+AGG 0.523671 3_1:-76055526 Msa0376020:CDS
TGCATTTCAGCTGGTTTCAG+AGG 0.526061 3_1:-76055450 Msa0376020:CDS
GCTGCTTATGACGATGATGA+TGG 0.528010 3_1:-76054297 Msa0376020:CDS
TCTGCTGAGAACAAAGTAAG+TGG 0.530077 3_1:-76055599 Msa0376020:CDS
CGTCATAAGCAGCCCAGACC+TGG 0.530148 3_1:+76054307 None:intergenic
TCTTTACCTGTCACATCTGA+TGG 0.530274 3_1:-76054429 Msa0376020:CDS
TAGCTTCTGTTGCTATCTGA+AGG 0.531060 3_1:+76053698 None:intergenic
AAATTGTGAAAATCAGGATC+CGG 0.532427 3_1:+76054366 None:intergenic
TAATAATTCAAACCTTCAGT+GGG 0.534646 3_1:-76055009 Msa0376020:CDS
GAGGATTCAAATGTCTAAGA+AGG 0.536968 3_1:-76054853 Msa0376020:CDS
ACAAAAGCTTCATTACAGTT+GGG 0.539482 3_1:+76055125 None:intergenic
ACCAGGACCAGAATGAGGTT+AGG 0.540017 3_1:-76053849 Msa0376020:CDS
ACTTGTGGGGATTTCAGGAC+TGG 0.540134 3_1:-76054141 Msa0376020:CDS
ACAGAAGCTAATGAGGCAGC+AGG 0.543005 3_1:-76053685 Msa0376020:CDS
CATCAATTGCTGAATGGGAG+AGG 0.543526 3_1:-76054872 Msa0376020:CDS
GCTATCTGAAGGAGGTCTAA+AGG 0.548645 3_1:+76053709 None:intergenic
ACAGTCTCTTCATCAGCAAA+GGG 0.551588 3_1:+76055542 None:intergenic
AAGTAAGTGGAGAAATGGAT+TGG 0.558705 3_1:-76055586 Msa0376020:CDS
CCAGACCTGGTCCTCTGCAA+AGG 0.559516 3_1:+76054320 None:intergenic
TTTCTGTGGAGGGGCAGAAG+TGG 0.559602 3_1:+76055235 None:intergenic
TGATAATAACCATTTGAACT+AGG 0.560472 3_1:+76055317 None:intergenic
GGTTAGGAGGATTCCTAAAG+AGG 0.561219 3_1:-76053833 Msa0376020:CDS
CAACAAAGATGAGGCAGTCA+GGG 0.562873 3_1:-76055756 Msa0376020:CDS
GTGGGGTTCCCACTCCAGAA+TGG 0.563354 3_1:-76054991 Msa0376020:CDS
AGTGGAGAAATGGATTGGTA+TGG 0.565199 3_1:-76055581 Msa0376020:CDS
TCCGCATCTTTCCAGGTAAG+GGG 0.566183 3_1:-76054044 Msa0376020:CDS
GACTAGAATATAACCAGAAG+AGG 0.567369 3_1:-76055397 Msa0376020:CDS
GGTCTGGGAATCATAATGCT+CGG 0.568311 3_1:-76055265 Msa0376020:CDS
AACCAGAAGAGGAGTTTGAA+AGG 0.568957 3_1:-76055386 Msa0376020:CDS
AACAAGTCTTTAGGTGCAGA+GGG 0.573429 3_1:-76055473 Msa0376020:CDS
AGCTGAAAGTTCCTTTGCAG+AGG 0.574398 3_1:-76054331 Msa0376020:CDS
CAAATGTCTAAGAAGGCTGA+TGG 0.579017 3_1:-76054846 Msa0376020:CDS
GCTTTAGGACAGTATTTCGA+AGG 0.582482 3_1:-76053873 Msa0376020:CDS
ACTGTACCATCAGATGTGAC+AGG 0.585213 3_1:+76054423 None:intergenic
GGCAACAGACGACGATCCAT+CGG 0.586319 3_1:+76054953 None:intergenic
TGGAGTGGGAACCCCACTGA+AGG 0.587012 3_1:+76054997 None:intergenic
CTTCTGTTGCTATCTGAAGG+AGG 0.589865 3_1:+76053701 None:intergenic
AAACAAGTCTTTAGGTGCAG+AGG 0.591608 3_1:-76055474 Msa0376020:CDS
ATTCTGGTGCTGTTGATGGG+AGG 0.596016 3_1:+76055052 None:intergenic
CAGTTTCTCTGGATCAGGAA+AGG 0.599343 3_1:-76054724 Msa0376020:CDS
AGGACCAGAATGAGGTTAGG+AGG 0.601398 3_1:-76053846 Msa0376020:CDS
TTCTGGTGCTGTTGATGGGA+GGG 0.601651 3_1:+76055053 None:intergenic
AGTGAGAAAGTGAAGAGAGA+AGG 0.603158 3_1:-76054900 Msa0376020:CDS
GTAATAATTCAAACCTTCAG+TGG 0.605977 3_1:-76055010 Msa0376020:CDS
AAAACCAGCCATTCTGGAGT+GGG 0.608477 3_1:+76054983 None:intergenic
CCACAAAGCCATTTAGAATG+CGG 0.614075 3_1:-76054236 Msa0376020:CDS
CCGCATCTTTCCAGGTAAGG+GGG 0.621724 3_1:-76054043 Msa0376020:CDS
AAGGCACCAGGACCAGAATG+AGG 0.626567 3_1:-76053854 Msa0376020:CDS
GATGGAGTGCAACAAAGATG+AGG 0.628263 3_1:-76055765 Msa0376020:CDS
TAAAGCCAGGAAACTTAACA+AGG 0.631614 3_1:+76053890 None:intergenic
TTGGGCCCAATAGATTGGGT+AGG 0.631748 3_1:-76054180 Msa0376020:CDS
TAGCTGCTGGATCCAACTCT+CGG 0.634962 3_1:+76053734 None:intergenic
ACATGTTGATGGATAAGGCA+CGG 0.636563 3_1:-76054611 Msa0376020:CDS
TGGTTCTATGAAGAAAAGGA+AGG 0.636867 3_1:-76054826 Msa0376020:CDS
AGTCAGGGCTAAAGAAATAG+CGG 0.640488 3_1:-76055741 Msa0376020:CDS
CATTTGATGGATGCCCAGCA+CGG 0.640859 3_1:+76055342 None:intergenic
AGAATGCAACTTCAAATGTG+AGG 0.642079 3_1:-76055286 Msa0376020:CDS
GATGATTTCAGTGAAGAGCA+AGG 0.643056 3_1:-76053928 Msa0376020:CDS
AAGCCAGGAAACTTAACAAG+GGG 0.655417 3_1:+76053892 None:intergenic
AGGTGGACAAAAGGCACCAG+AGG 0.656547 3_1:-76054072 Msa0376020:CDS
AAAGCCAGGAAACTTAACAA+GGG 0.677929 3_1:+76053891 None:intergenic
GTTCCTAATCACTTGCTCAG+TGG 0.678955 3_1:-76053787 Msa0376020:CDS
ATATTATGCTAGAATTCACA+AGG 0.689430 3_1:-76054265 Msa0376020:CDS
AATAATTCAAACCTTCAGTG+GGG 0.716457 3_1:-76055008 Msa0376020:CDS
GATACACAAGTATGACATGG+TGG 0.719131 3_1:-76053959 Msa0376020:CDS
GGGCTAAAGAAATAGCGGAG+AGG 0.758438 3_1:-76055736 Msa0376020:CDS
AGTGATACACAAGTATGACA+TGG 0.781290 3_1:-76053962 Msa0376020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTTGTATGCTGATT+TGG - chr3_1:76053776-76053795 Msa0376020:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - chr3_1:76054858-76054877 Msa0376020:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - chr3_1:76055342-76055361 Msa0376020:CDS 20.0%
!!! TAAAAATTTGTATGCTGATT+TGG - chr3_1:76053776-76053795 Msa0376020:CDS 20.0%
!! TTAGTAAAAAACTTGAAGAA+TGG - chr3_1:76054858-76054877 Msa0376020:CDS 20.0%
!!! ATTAAATTCATTTTCACACA+AGG - chr3_1:76055342-76055361 Msa0376020:CDS 20.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - chr3_1:76053729-76053748 Msa0376020:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + chr3_1:76053811-76053830 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + chr3_1:76053812-76053831 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + chr3_1:76054125-76054144 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - chr3_1:76054430-76054449 Msa0376020:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - chr3_1:76054932-76054951 Msa0376020:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + chr3_1:76055172-76055191 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - chr3_1:76055174-76055193 Msa0376020:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG - chr3_1:76055283-76055302 Msa0376020:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG - chr3_1:76055284-76055303 Msa0376020:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG - chr3_1:76055285-76055304 Msa0376020:CDS 25.0%
!!! TTTTCTGAAAGGGAATATAT+TGG - chr3_1:76053729-76053748 Msa0376020:CDS 25.0%
! ATCAATAGTAGTCAAAAACT+GGG + chr3_1:76053811-76053830 None:intergenic 25.0%
! TATCAATAGTAGTCAAAAAC+TGG + chr3_1:76053812-76053831 None:intergenic 25.0%
! TGATAATAACCATTTGAACT+AGG + chr3_1:76054125-76054144 None:intergenic 25.0%
! TAATAATTCAAACCTTCAGT+GGG - chr3_1:76054430-76054449 Msa0376020:CDS 25.0%
! ATATTCAATGACAAAACAAC+TGG - chr3_1:76054932-76054951 Msa0376020:CDS 25.0%
! TGAATTCTAGCATAATATCT+AGG + chr3_1:76055172-76055191 None:intergenic 25.0%
! ATATTATGCTAGAATTCACA+AGG - chr3_1:76055174-76055193 Msa0376020:CDS 25.0%
!!! TCTGGTTTTTATAAAACTTG+TGG - chr3_1:76055283-76055302 Msa0376020:CDS 25.0%
!!! CTGGTTTTTATAAAACTTGT+GGG - chr3_1:76055284-76055303 Msa0376020:CDS 25.0%
!! TGGTTTTTATAAAACTTGTG+GGG - chr3_1:76055285-76055304 Msa0376020:CDS 25.0%
!! AAATTTGTATGCTGATTTGG+AGG - chr3_1:76053779-76053798 Msa0376020:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + chr3_1:76053959-76053978 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + chr3_1:76054113-76054132 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - chr3_1:76054113-76054132 Msa0376020:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + chr3_1:76054240-76054259 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + chr3_1:76054317-76054336 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + chr3_1:76054362-76054381 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + chr3_1:76054363-76054382 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + chr3_1:76054425-76054444 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - chr3_1:76054429-76054448 Msa0376020:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - chr3_1:76054431-76054450 Msa0376020:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - chr3_1:76054743-76054762 Msa0376020:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - chr3_1:76054861-76054880 Msa0376020:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + chr3_1:76054978-76054997 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - chr3_1:76055054-76055073 Msa0376020:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + chr3_1:76055076-76055095 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + chr3_1:76055082-76055101 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - chr3_1:76055081-76055100 Msa0376020:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - chr3_1:76055347-76055366 Msa0376020:CDS 30.0%
!! AAATTTGTATGCTGATTTGG+AGG - chr3_1:76053779-76053798 Msa0376020:CDS 30.0%
!!! CTAAAGACTTGTTTTTGTCA+GGG + chr3_1:76053959-76053978 None:intergenic 30.0%
TTTGAACTAGGTACATTTGA+TGG + chr3_1:76054113-76054132 None:intergenic 30.0%
TCAAATGTACCTAGTTCAAA+TGG - chr3_1:76054113-76054132 Msa0376020:CDS 30.0%
CTTATTACAGATAGTCCAAA+AGG + chr3_1:76054240-76054259 None:intergenic 30.0%
ACAAAAGCTTCATTACAGTT+GGG + chr3_1:76054317-76054336 None:intergenic 30.0%
! CTTGATGGCTTAAAAACATT+GGG + chr3_1:76054362-76054381 None:intergenic 30.0%
! ACTTGATGGCTTAAAAACAT+TGG + chr3_1:76054363-76054382 None:intergenic 30.0%
AGGTTTGAATTATTACTTCC+AGG + chr3_1:76054425-76054444 None:intergenic 30.0%
GTAATAATTCAAACCTTCAG+TGG - chr3_1:76054429-76054448 Msa0376020:CDS 30.0%
AATAATTCAAACCTTCAGTG+GGG - chr3_1:76054431-76054450 Msa0376020:CDS 30.0%
TTGGAAAAAGAAAGGACTTA+TGG - chr3_1:76054743-76054762 Msa0376020:CDS 30.0%
GTAAAAAACTTGAAGAATGG+AGG - chr3_1:76054861-76054880 Msa0376020:CDS 30.0%
! ATGCTTGTTACCATTAACAT+TGG + chr3_1:76054978-76054997 None:intergenic 30.0%
CTATGTTACAATCAATGTTC+CGG - chr3_1:76055054-76055073 Msa0376020:CDS 30.0%
AAATTGTGAAAATCAGGATC+CGG + chr3_1:76055076-76055095 None:intergenic 30.0%
AGGTCAAAATTGTGAAAATC+AGG + chr3_1:76055082-76055101 None:intergenic 30.0%
!! TGATTTTCACAATTTTGACC+TGG - chr3_1:76055081-76055100 Msa0376020:CDS 30.0%
! ATTCATTTTCACACAAGGTT+AGG - chr3_1:76055347-76055366 Msa0376020:CDS 30.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - chr3_1:76053719-76053738 Msa0376020:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - chr3_1:76053752-76053771 Msa0376020:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - chr3_1:76053848-76053867 Msa0376020:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - chr3_1:76053853-76053872 Msa0376020:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - chr3_1:76053867-76053886 Msa0376020:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + chr3_1:76053960-76053979 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - chr3_1:76053957-76053976 Msa0376020:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + chr3_1:76054039-76054058 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - chr3_1:76054042-76054061 Msa0376020:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - chr3_1:76054153-76054172 Msa0376020:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - chr3_1:76054222-76054241 Msa0376020:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG + chr3_1:76054318-76054337 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - chr3_1:76054316-76054335 Msa0376020:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - chr3_1:76054586-76054605 Msa0376020:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - chr3_1:76054609-76054628 Msa0376020:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - chr3_1:76054613-76054632 Msa0376020:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - chr3_1:76054652-76054671 Msa0376020:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + chr3_1:76054665-76054684 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - chr3_1:76054670-76054689 Msa0376020:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - chr3_1:76054735-76054754 Msa0376020:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - chr3_1:76054752-76054771 Msa0376020:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - chr3_1:76054758-76054777 Msa0376020:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - chr3_1:76054817-76054836 Msa0376020:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - chr3_1:76054823-76054842 Msa0376020:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - chr3_1:76054868-76054887 Msa0376020:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - chr3_1:76054965-76054984 Msa0376020:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + chr3_1:76055051-76055070 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + chr3_1:76055056-76055075 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + chr3_1:76055214-76055233 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - chr3_1:76055212-76055231 Msa0376020:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - chr3_1:76055293-76055312 Msa0376020:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + chr3_1:76055472-76055491 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - chr3_1:76055477-76055496 Msa0376020:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + chr3_1:76055551-76055570 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + chr3_1:76055552-76055571 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - chr3_1:76055551-76055570 Msa0376020:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + chr3_1:76055622-76055641 None:intergenic 35.0%
!! GGAGAGGAAATTTTCTGAAA+GGG - chr3_1:76053719-76053738 Msa0376020:CDS 35.0%
!! TGCAAAGAAGTTTGCTATCA+AGG - chr3_1:76053752-76053771 Msa0376020:CDS 35.0%
GAACAAAGTAAGTGGAGAAA+TGG - chr3_1:76053848-76053867 Msa0376020:CDS 35.0%
AAGTAAGTGGAGAAATGGAT+TGG - chr3_1:76053853-76053872 Msa0376020:CDS 35.0%
!! ATGGATTGGTATGGTATACT+TGG - chr3_1:76053867-76053886 Msa0376020:CDS 35.0%
!!! CCTAAAGACTTGTTTTTGTC+AGG + chr3_1:76053960-76053979 None:intergenic 35.0%
CCTGACAAAAACAAGTCTTT+AGG - chr3_1:76053957-76053976 Msa0376020:CDS 35.0%
CTGGTTATATTCTAGTCTCT+TGG + chr3_1:76054039-76054058 None:intergenic 35.0%
GACTAGAATATAACCAGAAG+AGG - chr3_1:76054042-76054061 Msa0376020:CDS 35.0%
AGAATGCAACTTCAAATGTG+AGG - chr3_1:76054153-76054172 Msa0376020:CDS 35.0%
! AGAAAAAGGCTGAAACCTTT+TGG - chr3_1:76054222-76054241 Msa0376020:CDS 35.0%
CACAAAAGCTTCATTACAGT+TGG + chr3_1:76054318-76054337 None:intergenic 35.0%
! CAACTGTAATGAAGCTTTTG+TGG - chr3_1:76054316-76054335 Msa0376020:CDS 35.0%
GAGGATTCAAATGTCTAAGA+AGG - chr3_1:76054586-76054605 Msa0376020:CDS 35.0%
! CTGATGGTTCTATGAAGAAA+AGG - chr3_1:76054609-76054628 Msa0376020:CDS 35.0%
! TGGTTCTATGAAGAAAAGGA+AGG - chr3_1:76054613-76054632 Msa0376020:CDS 35.0%
TAATGGCTATCCAGGATATA+CGG - chr3_1:76054652-76054671 Msa0376020:CDS 35.0%
! AAATGATTTGCCGTATATCC+TGG + chr3_1:76054665-76054684 None:intergenic 35.0%
! TACGGCAAATCATTTTGCTA+CGG - chr3_1:76054670-76054689 Msa0376020:CDS 35.0%
AGGCTAACTTGGAAAAAGAA+AGG - chr3_1:76054735-76054754 Msa0376020:CDS 35.0%
! GAAAGGACTTATGGTTTTTC+AGG - chr3_1:76054752-76054771 Msa0376020:CDS 35.0%
!!! ACTTATGGTTTTTCAGGTCT+TGG - chr3_1:76054758-76054777 Msa0376020:CDS 35.0%
TGAGTTACGAAACATGTTGA+TGG - chr3_1:76054817-76054836 Msa0376020:CDS 35.0%
! ACGAAACATGTTGATGGATA+AGG - chr3_1:76054823-76054842 Msa0376020:CDS 35.0%
ACTTGAAGAATGGAGGTTAA+TGG - chr3_1:76054868-76054887 Msa0376020:CDS 35.0%
TATGGAGAGTCCAATGTTAA+TGG - chr3_1:76054965-76054984 Msa0376020:CDS 35.0%
! CATTGATTGTAACATAGGCT+TGG + chr3_1:76055051-76055070 None:intergenic 35.0%
! CGGAACATTGATTGTAACAT+AGG + chr3_1:76055056-76055075 None:intergenic 35.0%
CAACTAATCCGCATTCTAAA+TGG + chr3_1:76055214-76055233 None:intergenic 35.0%
!! CATTTAGAATGCGGATTAGT+TGG - chr3_1:76055212-76055231 Msa0376020:CDS 35.0%
ATAAAACTTGTGGGGATTTC+AGG - chr3_1:76055293-76055312 Msa0376020:CDS 35.0%
TACTTGTGTATCACTTCATC+TGG + chr3_1:76055472-76055491 None:intergenic 35.0%
AGTGATACACAAGTATGACA+TGG - chr3_1:76055477-76055496 Msa0376020:CDS 35.0%
AAAGCCAGGAAACTTAACAA+GGG + chr3_1:76055551-76055570 None:intergenic 35.0%
TAAAGCCAGGAAACTTAACA+AGG + chr3_1:76055552-76055571 None:intergenic 35.0%
! TTGTTAAGTTTCCTGGCTTT+AGG - chr3_1:76055551-76055570 Msa0376020:CDS 35.0%
AATCGAAACATCTCCTCTTT+AGG + chr3_1:76055622-76055641 None:intergenic 35.0%
AGTCAGGGCTAAAGAAATAG+CGG - chr3_1:76053698-76053717 Msa0376020:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - chr3_1:76053718-76053737 Msa0376020:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - chr3_1:76053840-76053859 Msa0376020:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - chr3_1:76053858-76053877 Msa0376020:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + chr3_1:76053900-76053919 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + chr3_1:76053901-76053920 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - chr3_1:76053913-76053932 Msa0376020:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - chr3_1:76053920-76053939 Msa0376020:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + chr3_1:76053952-76053971 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + chr3_1:76053953-76053972 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - chr3_1:76053965-76053984 Msa0376020:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - chr3_1:76053966-76053985 Msa0376020:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - chr3_1:76054053-76054072 Msa0376020:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - chr3_1:76054159-76054178 Msa0376020:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + chr3_1:76054217-76054236 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + chr3_1:76054221-76054240 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - chr3_1:76054243-76054262 Msa0376020:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG + chr3_1:76054359-76054378 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + chr3_1:76054393-76054412 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - chr3_1:76054539-76054558 Msa0376020:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - chr3_1:76054562-76054581 Msa0376020:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - chr3_1:76054593-76054612 Msa0376020:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - chr3_1:76054635-76054654 Msa0376020:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - chr3_1:76054671-76054690 Msa0376020:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - chr3_1:76054677-76054696 Msa0376020:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - chr3_1:76054761-76054780 Msa0376020:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - chr3_1:76054828-76054847 Msa0376020:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - chr3_1:76054947-76054966 Msa0376020:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - chr3_1:76055010-76055029 Msa0376020:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - chr3_1:76055203-76055222 Msa0376020:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - chr3_1:76055241-76055260 Msa0376020:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - chr3_1:76055255-76055274 Msa0376020:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + chr3_1:76055267-76055286 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - chr3_1:76055350-76055369 Msa0376020:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - chr3_1:76055422-76055441 Msa0376020:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - chr3_1:76055434-76055453 Msa0376020:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + chr3_1:76055451-76055470 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - chr3_1:76055480-76055499 Msa0376020:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - chr3_1:76055511-76055530 Msa0376020:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + chr3_1:76055550-76055569 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - chr3_1:76055566-76055585 Msa0376020:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - chr3_1:76055630-76055649 Msa0376020:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + chr3_1:76055744-76055763 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - chr3_1:76055747-76055766 Msa0376020:CDS 40.0%
AGTCAGGGCTAAAGAAATAG+CGG - chr3_1:76053698-76053717 Msa0376020:CDS 40.0%
! CGGAGAGGAAATTTTCTGAA+AGG - chr3_1:76053718-76053737 Msa0376020:CDS 40.0%
TCTGCTGAGAACAAAGTAAG+TGG - chr3_1:76053840-76053859 Msa0376020:CDS 40.0%
!! AGTGGAGAAATGGATTGGTA+TGG - chr3_1:76053858-76053877 Msa0376020:CDS 40.0%
ACAGTCTCTTCATCAGCAAA+GGG + chr3_1:76053900-76053919 None:intergenic 40.0%
AACAGTCTCTTCATCAGCAA+AGG + chr3_1:76053901-76053920 None:intergenic 40.0%
AGACTGTTAGAAAGCAGTAC+AGG - chr3_1:76053913-76053932 Msa0376020:CDS 40.0%
TAGAAAGCAGTACAGGAAAC+TGG - chr3_1:76053920-76053939 Msa0376020:CDS 40.0%
!!! CTTGTTTTTGTCAGGGTGAA+GGG + chr3_1:76053952-76053971 None:intergenic 40.0%
!!! ACTTGTTTTTGTCAGGGTGA+AGG + chr3_1:76053953-76053972 None:intergenic 40.0%
AAACAAGTCTTTAGGTGCAG+AGG - chr3_1:76053965-76053984 Msa0376020:CDS 40.0%
AACAAGTCTTTAGGTGCAGA+GGG - chr3_1:76053966-76053985 Msa0376020:CDS 40.0%
AACCAGAAGAGGAGTTTGAA+AGG - chr3_1:76054053-76054072 Msa0376020:CDS 40.0%
CAACTTCAAATGTGAGGTCT+GGG - chr3_1:76054159-76054178 Msa0376020:CDS 40.0%
! TTTCAGCCTTTTTCTGTGGA+GGG + chr3_1:76054217-76054236 None:intergenic 40.0%
! AAGGTTTCAGCCTTTTTCTG+TGG + chr3_1:76054221-76054240 None:intergenic 40.0%
GGACTATCTGTAATAAGTGC+AGG - chr3_1:76054243-76054262 Msa0376020:CDS 40.0%
GATGGCTTAAAAACATTGGG+AGG + chr3_1:76054359-76054378 None:intergenic 40.0%
!! TGAATTCTGGTGCTGTTGAT+GGG + chr3_1:76054393-76054412 None:intergenic 40.0%
AGTGAGAAAGTGAAGAGAGA+AGG - chr3_1:76054539-76054558 Msa0376020:CDS 40.0%
AGCACCATCAATTGCTGAAT+GGG - chr3_1:76054562-76054581 Msa0376020:CDS 40.0%
CAAATGTCTAAGAAGGCTGA+TGG - chr3_1:76054593-76054612 Msa0376020:CDS 40.0%
GCAGATGATATTCGCGTTAA+TGG - chr3_1:76054635-76054654 Msa0376020:CDS 40.0%
! ACGGCAAATCATTTTGCTAC+GGG - chr3_1:76054671-76054690 Msa0376020:CDS 40.0%
! AATCATTTTGCTACGGGATC+TGG - chr3_1:76054677-76054696 Msa0376020:CDS 40.0%
!!! TATGGTTTTTCAGGTCTTGG+AGG - chr3_1:76054761-76054780 Msa0376020:CDS 40.0%
! ACATGTTGATGGATAAGGCA+CGG - chr3_1:76054828-76054847 Msa0376020:CDS 40.0%
! ACAACTGGTTCAGAGAAGTA+TGG - chr3_1:76054947-76054966 Msa0376020:CDS 40.0%
TCTTTACCTGTCACATCTGA+TGG - chr3_1:76055010-76055029 Msa0376020:CDS 40.0%
! CCACAAAGCCATTTAGAATG+CGG - chr3_1:76055203-76055222 Msa0376020:CDS 40.0%
TCTCGAAGCAACAGTGAATT+GGG - chr3_1:76055241-76055260 Msa0376020:CDS 40.0%
TGAATTGGGCCCAATAGATT+GGG - chr3_1:76055255-76055274 Msa0376020:CDS 40.0%
CAGAACCTACCCAATCTATT+GGG + chr3_1:76055267-76055286 None:intergenic 40.0%
! CATTTTCACACAAGGTTAGG+TGG - chr3_1:76055350-76055369 Msa0376020:CDS 40.0%
TCTGGGCACTTTATAGAAAC+TGG - chr3_1:76055422-76055441 Msa0376020:CDS 40.0%
! ATAGAAACTGGTCTCCTGAT+TGG - chr3_1:76055434-76055453 Msa0376020:CDS 40.0%
GGAGTATGTTCATTCCAATC+AGG + chr3_1:76055451-76055470 None:intergenic 40.0%
GATACACAAGTATGACATGG+TGG - chr3_1:76055480-76055499 Msa0376020:CDS 40.0%
GATGATTTCAGTGAAGAGCA+AGG - chr3_1:76055511-76055530 Msa0376020:CDS 40.0%
AAGCCAGGAAACTTAACAAG+GGG + chr3_1:76055550-76055569 None:intergenic 40.0%
!! GCTTTAGGACAGTATTTCGA+AGG - chr3_1:76055566-76055585 Msa0376020:CDS 40.0%
GATGTTTCGATTCTCTCATC+AGG - chr3_1:76055630-76055649 Msa0376020:CDS 40.0%
TAGCTTCTGTTGCTATCTGA+AGG + chr3_1:76055744-76055763 None:intergenic 40.0%
GATAGCAACAGAAGCTAATG+AGG - chr3_1:76055747-76055766 Msa0376020:CDS 40.0%
CAACAAAGATGAGGCAGTCA+GGG - chr3_1:76053683-76053702 Msa0376020:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - chr3_1:76053989-76054008 Msa0376020:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + chr3_1:76054058-76054077 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + chr3_1:76054082-76054101 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - chr3_1:76054084-76054103 Msa0376020:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - chr3_1:76054158-76054177 Msa0376020:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - chr3_1:76054174-76054193 Msa0376020:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - chr3_1:76054175-76054194 Msa0376020:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + chr3_1:76054216-76054235 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + chr3_1:76054218-76054237 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - chr3_1:76054327-76054346 Msa0376020:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + chr3_1:76054356-76054375 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + chr3_1:76054394-76054413 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + chr3_1:76054406-76054425 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - chr3_1:76054404-76054423 Msa0376020:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + chr3_1:76054459-76054478 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - chr3_1:76054561-76054580 Msa0376020:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + chr3_1:76054569-76054588 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - chr3_1:76054567-76054586 Msa0376020:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - chr3_1:76054644-76054663 Msa0376020:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - chr3_1:76054715-76054734 Msa0376020:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - chr3_1:76054724-76054743 Msa0376020:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + chr3_1:76055019-76055038 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + chr3_1:76055102-76055121 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - chr3_1:76055108-76055127 Msa0376020:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - chr3_1:76055142-76055161 Msa0376020:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + chr3_1:76055206-76055225 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - chr3_1:76055240-76055259 Msa0376020:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - chr3_1:76055254-76055273 Msa0376020:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG + chr3_1:76055268-76055287 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG - chr3_1:76055265-76055284 Msa0376020:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - chr3_1:76055358-76055377 Msa0376020:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - chr3_1:76055544-76055563 Msa0376020:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + chr3_1:76055565-76055584 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + chr3_1:76055600-76055619 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - chr3_1:76055606-76055625 Msa0376020:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - chr3_1:76055652-76055671 Msa0376020:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - chr3_1:76055679-76055698 Msa0376020:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + chr3_1:76055733-76055752 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + chr3_1:76055741-76055760 None:intergenic 45.0%
CAACAAAGATGAGGCAGTCA+GGG - chr3_1:76053683-76053702 Msa0376020:CDS 45.0%
! TGCATTTCAGCTGGTTTCAG+AGG - chr3_1:76053989-76054008 Msa0376020:CDS 45.0%
AGCCTTTCAAACTCCTCTTC+TGG + chr3_1:76054058-76054077 None:intergenic 45.0%
! CACGGTTTGGAGTAGTATGT+TGG + chr3_1:76054082-76054101 None:intergenic 45.0%
ATACTACTCCAAACCGTGCT+GGG - chr3_1:76054084-76054103 Msa0376020:CDS 45.0%
GCAACTTCAAATGTGAGGTC+TGG - chr3_1:76054158-76054177 Msa0376020:CDS 45.0%
GGTCTGGGAATCATAATGCT+CGG - chr3_1:76054174-76054193 Msa0376020:CDS 45.0%
GTCTGGGAATCATAATGCTC+GGG - chr3_1:76054175-76054194 Msa0376020:CDS 45.0%
! TTCAGCCTTTTTCTGTGGAG+GGG + chr3_1:76054216-76054235 None:intergenic 45.0%
! GTTTCAGCCTTTTTCTGTGG+AGG + chr3_1:76054218-76054237 None:intergenic 45.0%
! AAGCTTTTGTGGCCATAGAG+AGG - chr3_1:76054327-76054346 Msa0376020:CDS 45.0%
GGCTTAAAAACATTGGGAGG+AGG + chr3_1:76054356-76054375 None:intergenic 45.0%
!! GTGAATTCTGGTGCTGTTGA+TGG + chr3_1:76054394-76054413 None:intergenic 45.0%
CAGGATGACGTTGTGAATTC+TGG + chr3_1:76054406-76054425 None:intergenic 45.0%
CAGAATTCACAACGTCATCC+TGG - chr3_1:76054404-76054423 Msa0376020:CDS 45.0%
!! AAAACCAGCCATTCTGGAGT+GGG + chr3_1:76054459-76054478 None:intergenic 45.0%
GAGCACCATCAATTGCTGAA+TGG - chr3_1:76054561-76054580 Msa0376020:CDS 45.0%
CTCTCCCATTCAGCAATTGA+TGG + chr3_1:76054569-76054588 None:intergenic 45.0%
CATCAATTGCTGAATGGGAG+AGG - chr3_1:76054567-76054586 Msa0376020:CDS 45.0%
ATTCGCGTTAATGGCTATCC+AGG - chr3_1:76054644-76054663 Msa0376020:CDS 45.0%
CAGTTTCTCTGGATCAGGAA+AGG - chr3_1:76054715-76054734 Msa0376020:CDS 45.0%
TGGATCAGGAAAGGCTAACT+TGG - chr3_1:76054724-76054743 Msa0376020:CDS 45.0%
ACTGTACCATCAGATGTGAC+AGG + chr3_1:76055019-76055038 None:intergenic 45.0%
AGGAACTTTCAGCTCTATCC+AGG + chr3_1:76055102-76055121 None:intergenic 45.0%
AGCTGAAAGTTCCTTTGCAG+AGG - chr3_1:76055108-76055127 Msa0376020:CDS 45.0%
GCTGCTTATGACGATGATGA+TGG - chr3_1:76055142-76055161 Msa0376020:CDS 45.0%
! CCGCATTCTAAATGGCTTTG+TGG + chr3_1:76055206-76055225 None:intergenic 45.0%
CTCTCGAAGCAACAGTGAAT+TGG - chr3_1:76055240-76055259 Msa0376020:CDS 45.0%
GTGAATTGGGCCCAATAGAT+TGG - chr3_1:76055254-76055273 Msa0376020:CDS 45.0%
CCAGAACCTACCCAATCTAT+TGG + chr3_1:76055268-76055287 None:intergenic 45.0%
CCAATAGATTGGGTAGGTTC+TGG - chr3_1:76055265-76055284 Msa0376020:CDS 45.0%
CACAAGGTTAGGTGGACAAA+AGG - chr3_1:76055358-76055377 Msa0376020:CDS 45.0%
ACTCCCCTTGTTAAGTTTCC+TGG - chr3_1:76055544-76055563 Msa0376020:CDS 45.0%
CGAAATACTGTCCTAAAGCC+AGG + chr3_1:76055565-76055584 None:intergenic 45.0%
GAATCCTCCTAACCTCATTC+TGG + chr3_1:76055600-76055619 None:intergenic 45.0%
GGTTAGGAGGATTCCTAAAG+AGG - chr3_1:76055606-76055625 Msa0376020:CDS 45.0%
GTTCCTAATCACTTGCTCAG+TGG - chr3_1:76055652-76055671 Msa0376020:CDS 45.0%
GAAGCTCATAACGCTCCAAT+AGG - chr3_1:76055679-76055698 Msa0376020:CDS 45.0%
GCTATCTGAAGGAGGTCTAA+AGG + chr3_1:76055733-76055752 None:intergenic 45.0%
CTTCTGTTGCTATCTGAAGG+AGG + chr3_1:76055741-76055760 None:intergenic 45.0%
GCAACAAAGATGAGGCAGTC+AGG - chr3_1:76053682-76053701 Msa0376020:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - chr3_1:76053703-76053722 Msa0376020:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - chr3_1:76053994-76054013 Msa0376020:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - chr3_1:76054083-76054102 Msa0376020:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + chr3_1:76054100-76054119 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - chr3_1:76054208-76054227 Msa0376020:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + chr3_1:76054377-76054396 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + chr3_1:76054389-76054408 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + chr3_1:76054390-76054409 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + chr3_1:76054460-76054479 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - chr3_1:76054458-76054477 Msa0376020:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + chr3_1:76054465-76054484 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - chr3_1:76054514-76054533 Msa0376020:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - chr3_1:76054710-76054729 Msa0376020:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - chr3_1:76055114-76055133 Msa0376020:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - chr3_1:76055259-76055278 Msa0376020:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - chr3_1:76055298-76055317 Msa0376020:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + chr3_1:76055386-76055405 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - chr3_1:76055393-76055412 Msa0376020:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - chr3_1:76055394-76055413 Msa0376020:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - chr3_1:76055395-76055414 Msa0376020:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - chr3_1:76055573-76055592 Msa0376020:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - chr3_1:76055590-76055609 Msa0376020:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + chr3_1:76055594-76055613 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - chr3_1:76055593-76055612 Msa0376020:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + chr3_1:76055658-76055677 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - chr3_1:76055657-76055676 Msa0376020:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + chr3_1:76055678-76055697 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - chr3_1:76055693-76055712 Msa0376020:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + chr3_1:76055697-76055716 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + chr3_1:76055708-76055727 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + chr3_1:76055721-76055740 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - chr3_1:76055754-76055773 Msa0376020:CDS 50.0%
GCAACAAAGATGAGGCAGTC+AGG - chr3_1:76053682-76053701 Msa0376020:CDS 50.0%
! GGGCTAAAGAAATAGCGGAG+AGG - chr3_1:76053703-76053722 Msa0376020:CDS 50.0%
! TTCAGCTGGTTTCAGAGGCA+TGG - chr3_1:76053994-76054013 Msa0376020:CDS 50.0%
CATACTACTCCAAACCGTGC+TGG - chr3_1:76054083-76054102 Msa0376020:CDS 50.0%
! CATTTGATGGATGCCCAGCA+CGG + chr3_1:76054100-76054119 None:intergenic 50.0%
TTCTGCCCCTCCACAGAAAA+AGG - chr3_1:76054208-76054227 Msa0376020:CDS 50.0%
TGATGGGAGGGCAAACTTGA+TGG + chr3_1:76054377-76054396 None:intergenic 50.0%
!! TTCTGGTGCTGTTGATGGGA+GGG + chr3_1:76054389-76054408 None:intergenic 50.0%
!! ATTCTGGTGCTGTTGATGGG+AGG + chr3_1:76054390-76054409 None:intergenic 50.0%
! CAAAACCAGCCATTCTGGAG+TGG + chr3_1:76054460-76054479 None:intergenic 50.0%
!!! CACTCCAGAATGGCTGGTTT+TGG - chr3_1:76054458-76054477 Msa0376020:CDS 50.0%
GCTACCAAAACCAGCCATTC+TGG + chr3_1:76054465-76054484 None:intergenic 50.0%
! AGCTGCAAGTGTCGTGCAAA+AGG - chr3_1:76054514-76054533 Msa0376020:CDS 50.0%
TTGGGCAGTTTCTCTGGATC+AGG - chr3_1:76054710-76054729 Msa0376020:CDS 50.0%
AAGTTCCTTTGCAGAGGACC+AGG - chr3_1:76055114-76055133 Msa0376020:CDS 50.0%
TTGGGCCCAATAGATTGGGT+AGG - chr3_1:76055259-76055278 Msa0376020:CDS 50.0%
ACTTGTGGGGATTTCAGGAC+TGG - chr3_1:76055298-76055317 Msa0376020:CDS 50.0%
AAAGATGCGGACAACTCCTC+TGG + chr3_1:76055386-76055405 None:intergenic 50.0%
TGTCCGCATCTTTCCAGGTA+AGG - chr3_1:76055393-76055412 Msa0376020:CDS 50.0%
GTCCGCATCTTTCCAGGTAA+GGG - chr3_1:76055394-76055413 Msa0376020:CDS 50.0%
TCCGCATCTTTCCAGGTAAG+GGG - chr3_1:76055395-76055414 Msa0376020:CDS 50.0%
!! GACAGTATTTCGAAGGCACC+AGG - chr3_1:76055573-76055592 Msa0376020:CDS 50.0%
ACCAGGACCAGAATGAGGTT+AGG - chr3_1:76055590-76055609 Msa0376020:CDS 50.0%
TCCTAACCTCATTCTGGTCC+TGG + chr3_1:76055594-76055613 None:intergenic 50.0%
AGGACCAGAATGAGGTTAGG+AGG - chr3_1:76055593-76055612 Msa0376020:CDS 50.0%
TGGCCACTGAGCAAGTGATT+AGG + chr3_1:76055658-76055677 None:intergenic 50.0%
TAATCACTTGCTCAGTGGCC+AGG - chr3_1:76055657-76055676 Msa0376020:CDS 50.0%
! TTGGAGCGTTATGAGCTTCC+TGG + chr3_1:76055678-76055697 None:intergenic 50.0%
TCCAATAGGTTGCCGAGAGT+TGG - chr3_1:76055693-76055712 Msa0376020:CDS 50.0%
TCCAACTCTCGGCAACCTAT+TGG + chr3_1:76055697-76055716 None:intergenic 50.0%
TAGCTGCTGGATCCAACTCT+CGG + chr3_1:76055708-76055727 None:intergenic 50.0%
! AGGTCTAAAGGTGTAGCTGC+TGG + chr3_1:76055721-76055740 None:intergenic 50.0%
ACAGAAGCTAATGAGGCAGC+AGG - chr3_1:76055754-76055773 Msa0376020:CDS 50.0%
! TGCAGAGGGTGCATTTCAGC+TGG - chr3_1:76053980-76053999 Msa0376020:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + chr3_1:76054207-76054226 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - chr3_1:76054470-76054489 Msa0376020:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + chr3_1:76054489-76054508 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + chr3_1:76054510-76054529 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - chr3_1:76054692-76054711 Msa0376020:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - chr3_1:76054704-76054723 Msa0376020:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - chr3_1:76055120-76055139 Msa0376020:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - chr3_1:76055367-76055386 Msa0376020:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - chr3_1:76055388-76055407 Msa0376020:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + chr3_1:76055399-76055418 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - chr3_1:76055396-76055415 Msa0376020:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - chr3_1:76055404-76055423 Msa0376020:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - chr3_1:76055405-76055424 Msa0376020:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - chr3_1:76055585-76055604 Msa0376020:CDS 55.0%
! TGCAGAGGGTGCATTTCAGC+TGG - chr3_1:76053980-76053999 Msa0376020:CDS 55.0%
TTTCTGTGGAGGGGCAGAAG+TGG + chr3_1:76054207-76054226 None:intergenic 55.0%
!!! GCTGGTTTTGGTAGCACCGA+TGG - chr3_1:76054470-76054489 Msa0376020:CDS 55.0%
GGCAACAGACGACGATCCAT+CGG + chr3_1:76054489-76054508 None:intergenic 55.0%
CACGACACTTGCAGCTTGAG+CGG + chr3_1:76054510-76054529 None:intergenic 55.0%
! GGATCTGGAGCAGCAGGTTT+GGG - chr3_1:76054692-76054711 Msa0376020:CDS 55.0%
GCAGGTTTGGGCAGTTTCTC+TGG - chr3_1:76054704-76054723 Msa0376020:CDS 55.0%
CTTTGCAGAGGACCAGGTCT+GGG - chr3_1:76055120-76055139 Msa0376020:CDS 55.0%
!! AGGTGGACAAAAGGCACCAG+AGG - chr3_1:76055367-76055386 Msa0376020:CDS 55.0%
GGAGTTGTCCGCATCTTTCC+AGG - chr3_1:76055388-76055407 Msa0376020:CDS 55.0%
CCCCCTTACCTGGAAAGATG+CGG + chr3_1:76055399-76055418 None:intergenic 55.0%
CCGCATCTTTCCAGGTAAGG+GGG - chr3_1:76055396-76055415 Msa0376020:CDS 55.0%
TTCCAGGTAAGGGGGAAGTC+TGG - chr3_1:76055404-76055423 Msa0376020:CDS 55.0%
TCCAGGTAAGGGGGAAGTCT+GGG - chr3_1:76055405-76055424 Msa0376020:CDS 55.0%
! AAGGCACCAGGACCAGAATG+AGG - chr3_1:76055585-76055604 Msa0376020:CDS 55.0%
GATGGATGCCCAGCACGGTT+TGG + chr3_1:76054095-76054114 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + chr3_1:76054342-76054361 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + chr3_1:76054445-76054464 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - chr3_1:76054448-76054467 Msa0376020:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - chr3_1:76054452-76054471 Msa0376020:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - chr3_1:76054691-76054710 Msa0376020:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + chr3_1:76055122-76055141 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - chr3_1:76055119-76055138 Msa0376020:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + chr3_1:76055135-76055154 None:intergenic 60.0%
GATGGATGCCCAGCACGGTT+TGG + chr3_1:76054095-76054114 None:intergenic 60.0%
GGGAGGAGGACTCCTCTCTA+TGG + chr3_1:76054342-76054361 None:intergenic 60.0%
TGGAGTGGGAACCCCACTGA+AGG + chr3_1:76054445-76054464 None:intergenic 60.0%
GTGGGGTTCCCACTCCAGAA+TGG - chr3_1:76054448-76054467 Msa0376020:CDS 60.0%
GGTTCCCACTCCAGAATGGC+TGG - chr3_1:76054452-76054471 Msa0376020:CDS 60.0%
! GGGATCTGGAGCAGCAGGTT+TGG - chr3_1:76054691-76054710 Msa0376020:CDS 60.0%
CCAGACCTGGTCCTCTGCAA+AGG + chr3_1:76055122-76055141 None:intergenic 60.0%
CCTTTGCAGAGGACCAGGTC+TGG - chr3_1:76055119-76055138 Msa0376020:CDS 60.0%
CGTCATAAGCAGCCCAGACC+TGG + chr3_1:76055135-76055154 None:intergenic 60.0%
TGTGGAGGGGCAGAAGTGGC+AGG + chr3_1:76054203-76054222 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - chr3_1:76054686-76054705 Msa0376020:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + chr3_1:76055409-76055428 None:intergenic 65.0%
TGTGGAGGGGCAGAAGTGGC+AGG + chr3_1:76054203-76054222 None:intergenic 65.0%
! GCTACGGGATCTGGAGCAGC+AGG - chr3_1:76054686-76054705 Msa0376020:CDS 65.0%
GCCCAGACTTCCCCCTTACC+TGG + chr3_1:76055409-76055428 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76053675 76055786 76053675 ID=Msa0376020;Name=Msa0376020
chr3_1 mRNA 76053675 76055786 76053675 ID=Msa0376020-mRNA-1;Parent=Msa0376020;Name=Msa0376020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|703
chr3_1 exon 76053675 76055786 76053675 ID=Msa0376020-mRNA-1:exon:17913;Parent=Msa0376020-mRNA-1
chr3_1 CDS 76053675 76055786 76053675 ID=Msa0376020-mRNA-1:cds;Parent=Msa0376020-mRNA-1
Gene Sequence

>Msa0376020

ATGGAGTGCAACAAAGATGAGGCAGTCAGGGCTAAAGAAATAGCGGAGAGGAAATTTTCTGAAAGGGAATATATTGGTGCAAAGAAGTTTGCTATCAAGGCTAAAAATTTGTATGCTGATTTGGAGGATATTTCCCAGTTTTTGACTACTATTGATATTTATATATCTGCTGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAGTACAGGAAACTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTCAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGCTTCCAACATACTACTCCAAACCGTGCTGGGCATCCATCAAATGTACCTAGTTCAAATGGTTATTATCATTTTAAGAAGAATGCAACTTCAAATGTGAGGTCTGGGAATCATAATGCTCGGGCTCCTGCCACTTCTGCCCCTCCACAGAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAAGTGCAGGACACATTATGAATATCTCAGAGTTTATTTGAATCACACTCTTCTATGTCCCAACTGTAATGAAGCTTTTGTGGCCATAGAGAGGAGTCCTCCTCCCAATGTTTTTAAGCCATCAAGTTTGCCCTCCCATCAACAGCACCAGAATTCACAACGTCATCCTGGAAGTAATAATTCAAACCTTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACCGATGGATCGTCGTCTGTTGCCGCTCAAGCTGCAAGTGTCGTGCAAAAGGCAAGTGAGAAAGTGAAGAGAGAAGGAGCACCATCAATTGCTGAATGGGAGAGGATTCAAATGTCTAAGAAGGCTGATGGTTCTATGAAGAAAAGGAAGGCAGATGATATTCGCGTTAATGGCTATCCAGGATATACGGCAAATCATTTTGCTACGGGATCTGGAGCAGCAGGTTTGGGCAGTTTCTCTGGATCAGGAAAGGCTAACTTGGAAAAAGAAAGGACTTATGGTTTTTCAGGTCTTGGAGGCAAACATTACAGCATACGAGAGTTGTCATTGTTTGAGTTACGAAACATGTTGATGGATAAGGCACGGAATGAAATTAGTAAAAAACTTGAAGAATGGAGGTTAATGGCTGAAGCTAAGATTGTCAACAAGAATAAGAGACAGAAAAACATATTCAATGACAAAACAACTGGTTCAGAGAAGTATGGAGAGTCCAATGTTAATGGTAACAAGCATTTTTCTGTTGATTCTTTACCTGTCACATCTGATGGTACAGTTAAGAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACCTGGATAGAGCTGAAAGTTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGACGATGATGATGGAATGCCTAGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTTAGAATGCGGATTAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGGACTGGCAAGCATGAAGTATCTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTCCGCATCTTTCCAGGTAAGGGGGAAGTCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAAGTGATACACAAGTATGACATGGTGGAAGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACTCCCCTTGTTAAGTTTCCTGGCTTTAGGACAGTATTTCGAAGGCACCAGGACCAGAATGAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATCACTTGCTCAGTGGCCAGGAAGCTCATAACGCTCCAATAGGTTGCCGAGAGTTGGATCCAGCAGCTACACCTTTAGACCTCCTTCAGATAGCAACAGAAGCTAATGAGGCAGCAGGTAATGTTTAG

Protein sequence

>Msa0376020

MECNKDEAVRAKEIAERKFSEREYIGAKKFAIKAKNLYADLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFQLVSEAWSLLSDKTKRLEYNQKRSLKGFQHTTPNRAGHPSNVPSSNGYYHFKKNATSNVRSGNHNARAPATSAPPQKKAETFWTICNKCRTHYEYLRVYLNHTLLCPNCNEAFVAIERSPPPNVFKPSSLPSHQQHQNSQRHPGSNNSNLQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSIAEWERIQMSKKADGSMKKRKADDIRVNGYPGYTANHFATGSGAAGLGSFSGSGKANLEKERTYGFSGLGGKHYSIRELSLFELRNMLMDKARNEISKKLEEWRLMAEAKIVNKNKRQKNIFNDKTTGSEKYGESNVNGNKHFSVDSLPVTSDGTVKKSQAYVTINVPDPDFHNFDLDRAESSFAEDQVWAAYDDDDGMPRYYARIHKVISTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEVSESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKFPGFRTVFRRHQDQNEVRRIPKEEMFRFSHQVPNHLLSGQEAHNAPIGCRELDPAATPLDLLQIATEANEAAGNV*