AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0883030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883030 MtrunA17_Chr6g0463111 73.822 191 10 1 18 208 18 168 4.50e-95 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883030 AT5G52960.1 50.932 161 35 2 48 208 54 170 2.61e-48 156

Find 50 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCTTGGTTGAAAAGTT+TGG 0.240536 6_1:-33291557 Msa0883030:CDS
GCATAAAACAATGGTGGAAA+TGG 0.290226 6_1:+33291690 None:intergenic
GAAGCTTGGTTGAAAAGTTT+GGG 0.295163 6_1:-33291556 Msa0883030:CDS
TTCTGAAGCCACTCATCTTC+AGG 0.322161 6_1:+33291628 None:intergenic
TTAATCAGAGTAAGGATGAT+AGG 0.370877 6_1:-33291531 Msa0883030:CDS
AAATGGGTTGTGTGAAAGAT+TGG 0.398264 6_1:+33291763 None:intergenic
ATGTTACTGACCTCTATGTT+AGG 0.401705 6_1:-33291459 Msa0883030:intron
AGTACTAGAGGTTGGGAACT+TGG 0.413968 6_1:+33290163 None:intergenic
CATAAAACAATGGTGGAAAT+GGG 0.419809 6_1:+33291691 None:intergenic
TTTGGGGTTTAATCAGAGTA+AGG 0.421850 6_1:-33291539 Msa0883030:CDS
CCACTCATCTTCAGGAACTA+AGG 0.427512 6_1:+33291636 None:intergenic
GAGGTTGGGAACTTGGATAA+AGG 0.429120 6_1:+33290170 None:intergenic
CTATGAAATGCTAATGCCAT+TGG 0.433352 6_1:-33290266 Msa0883030:CDS
TATGAAATGCTAATGCCATT+GGG 0.444665 6_1:-33290265 Msa0883030:CDS
TTCAACCAAGCTTCAATACA+AGG 0.447618 6_1:+33291565 None:intergenic
GGTGGTGTTTGTGAATGTTA+AGG 0.450789 6_1:+33291822 None:intergenic
AGGTTGGGAACTTGGATAAA+GGG 0.455034 6_1:+33290171 None:intergenic
TACAAAGGCTTAGTCTTCTC+AGG 0.455056 6_1:+33291601 None:intergenic
GCTTGCCTTGTATTGAAGCT+TGG 0.464508 6_1:-33291570 Msa0883030:CDS
GACATACCAGTACTAGAGGT+TGG 0.485660 6_1:+33290155 None:intergenic
TGTGAATGTTAAGGTTGTGA+TGG 0.490304 6_1:+33291831 None:intergenic
GACATTGAGAATGCTGTGCT+TGG 0.498630 6_1:-33288641 Msa0883030:CDS
TTCTGAGGGAAATTGAAAGT+GGG 0.510831 6_1:+33291716 None:intergenic
AGGTATTTGAAGAGTGGACC+TGG 0.511447 6_1:-33288716 Msa0883030:intron
TTTCTGAGGGAAATTGAAAG+TGG 0.514101 6_1:+33291715 None:intergenic
GGGTTGTTAATAAGAGTGAT+TGG 0.515760 6_1:-33291501 Msa0883030:CDS
ACATACCAGTACTAGAGGTT+GGG 0.518077 6_1:+33290156 None:intergenic
TGAGGTTGGGAATGTGATGT+TGG 0.518989 6_1:+33291801 None:intergenic
AAGTTCCCAACCTCTAGTAC+TGG 0.522621 6_1:-33290161 Msa0883030:intron
TAATCAGAGTAAGGATGATA+GGG 0.526131 6_1:-33291530 Msa0883030:CDS
CACTCATCTTCAGGAACTAA+GGG 0.528082 6_1:+33291637 None:intergenic
TAAGGCCACATCAGCAGAGA+AGG 0.533714 6_1:+33290228 None:intergenic
GGTTGGGAATGTGATGTTGG+TGG 0.536430 6_1:+33291804 None:intergenic
GCTGATGTGGCCTTAGCAGT+TGG 0.540298 6_1:-33290220 Msa0883030:CDS
ATTGAGAATGCTGTGCTTGG+AGG 0.543070 6_1:-33288638 Msa0883030:CDS
GAATGTTAAGGTTGTGATGG+TGG 0.561334 6_1:+33291834 None:intergenic
ATCTTGAAAAGGATGTAGAA+AGG 0.564183 6_1:-33288691 Msa0883030:CDS
TGGACCTGGGAATCTTGAAA+AGG 0.568678 6_1:-33288702 Msa0883030:CDS
AAGGCCACATCAGCAGAGAA+GGG 0.577425 6_1:+33290229 None:intergenic
ATGAAATGCTAATGCCATTG+GGG 0.582291 6_1:-33290264 Msa0883030:CDS
TGAACCTTTGCATAAAACAA+TGG 0.588298 6_1:+33291681 None:intergenic
AAGCTTGGTTGAAAAGTTTG+GGG 0.607315 6_1:-33291555 Msa0883030:CDS
CCTTAGTTCCTGAAGATGAG+TGG 0.609305 6_1:-33291636 Msa0883030:CDS
AGGCCACATCAGCAGAGAAG+GGG 0.623364 6_1:+33290230 None:intergenic
GGCCACATCAGCAGAGAAGG+GGG 0.631222 6_1:+33290231 None:intergenic
ACCTTTGCATAAAACAATGG+TGG 0.631918 6_1:+33291684 None:intergenic
ACGAGACATACCAGTACTAG+AGG 0.658348 6_1:+33290151 None:intergenic
GGGGAAACTTCAAACCCCAA+TGG 0.658804 6_1:+33290250 None:intergenic
GGCAAGCTATGTGTATACAA+AGG 0.667400 6_1:+33291586 None:intergenic
GGTATTTGAAGAGTGGACCT+GGG 0.669089 6_1:-33288715 Msa0883030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATAAACCTTAATAAAA+AGG + chr6_1:33289315-33289334 None:intergenic 15.0%
!!! TTCTATTGAATTTTGTAATT+AGG - chr6_1:33290069-33290088 Msa0883030:intron 15.0%
!! AAAAAAAAAACATAATACAG+CGG + chr6_1:33291595-33291614 None:intergenic 15.0%
!!! TTTTTTTGTATACAAATTGT+TGG - chr6_1:33291621-33291640 Msa0883030:CDS 15.0%
!!! CAGTTAGAAAAAAACAATTT+TGG - chr6_1:33288671-33288690 Msa0883030:CDS 20.0%
!!! TTTTGTTTTTGTTTGTGTTA+AGG + chr6_1:33288839-33288858 None:intergenic 20.0%
!!! TTTTTCCTTCCTTTTTATTA+AGG - chr6_1:33289303-33289322 Msa0883030:intron 20.0%
!! ATAAACCTTAATAAAAAGGA+AGG + chr6_1:33289311-33289330 None:intergenic 20.0%
!!! ACGTGAAATTAAGATTTTAA+AGG + chr6_1:33289764-33289783 None:intergenic 20.0%
!!! TTTTGAGGTTTTAATGTTTA+TGG - chr6_1:33289922-33289941 Msa0883030:intron 20.0%
!!! AATTGTTTAATTGGTTTTTG+AGG - chr6_1:33290003-33290022 Msa0883030:intron 20.0%
!!! TTTTCCATGTTATACTATTT+AGG - chr6_1:33290212-33290231 Msa0883030:CDS 20.0%
!! TTATCCTAAATAGTATAACA+TGG + chr6_1:33290219-33290238 None:intergenic 20.0%
!!! TTTAACAAATTGCTATCTTT+TGG - chr6_1:33290293-33290312 Msa0883030:intron 20.0%
!!! TTAACAAATTGCTATCTTTT+GGG - chr6_1:33290294-33290313 Msa0883030:intron 20.0%
!!! AAGTGTTTGAATTTTACTAA+AGG + chr6_1:33291376-33291395 None:intergenic 20.0%
! TGTTATCTGCAAAAATTGTT+TGG + chr6_1:33288767-33288786 None:intergenic 25.0%
!!! TTTTGTTTGTGTTAAGGTTT+TGG + chr6_1:33288833-33288852 None:intergenic 25.0%
!!! AGAAATGGATTTTGTGAAAT+GGG + chr6_1:33288988-33289007 None:intergenic 25.0%
! AACAATTATGAACCACATAA+AGG + chr6_1:33289990-33290009 None:intergenic 25.0%
! GTGGTTCATAATTGTTTAAT+TGG - chr6_1:33289994-33290013 Msa0883030:intron 25.0%
!!! TTTAATTGGTTTTTGAGGTT+TGG - chr6_1:33290008-33290027 Msa0883030:intron 25.0%
!! GGATATTTAAGATGGAATTT+AGG - chr6_1:33290029-33290048 Msa0883030:intron 25.0%
!! TAACAAATTGCTATCTTTTG+GGG - chr6_1:33290295-33290314 Msa0883030:intron 25.0%
! ATAACAACAATGTGAATGTT+CGG + chr6_1:33290820-33290839 None:intergenic 25.0%
! TTTCCTAAAATCTAATACAG+TGG + chr6_1:33290953-33290972 None:intergenic 25.0%
!!! GTATTAGATTTTAGGAAAAC+TGG - chr6_1:33290955-33290974 Msa0883030:intron 25.0%
!! AATAAGCTGAAAACAGTTTT+TGG - chr6_1:33291855-33291874 Msa0883030:exon 25.0%
ATCTGCAAAAATTGTTTGGA+GGG + chr6_1:33288763-33288782 None:intergenic 30.0%
TATCTGCAAAAATTGTTTGG+AGG + chr6_1:33288764-33288783 None:intergenic 30.0%
!!! GGTTTTTTGAGTGATGAATT+TGG + chr6_1:33288812-33288831 None:intergenic 30.0%
!!! GTGAAAGATTGGATTTTTTG+TGG + chr6_1:33288961-33288980 None:intergenic 30.0%
!! GAGAAATGGATTTTGTGAAA+TGG + chr6_1:33288989-33289008 None:intergenic 30.0%
! CATAAAACAATGGTGGAAAT+GGG + chr6_1:33289044-33289063 None:intergenic 30.0%
TGAACCTTTGCATAAAACAA+TGG + chr6_1:33289054-33289073 None:intergenic 30.0%
TTAATCAGAGTAAGGATGAT+AGG - chr6_1:33289201-33289220 Msa0883030:intron 30.0%
TAATCAGAGTAAGGATGATA+GGG - chr6_1:33289202-33289221 Msa0883030:intron 30.0%
AAAAAACTCACCTAACATAG+AGG + chr6_1:33289286-33289305 None:intergenic 30.0%
!!! TGTTTTCGCTTTTTGTGTTT+TGG - chr6_1:33289335-33289354 Msa0883030:intron 30.0%
!!! GTTTTCGCTTTTTGTGTTTT+GGG - chr6_1:33289336-33289355 Msa0883030:intron 30.0%
!!! TTTTGTGTTTTGGGTTTTTG+AGG - chr6_1:33289345-33289364 Msa0883030:intron 30.0%
! TTGTCACTCGTAGTAATTTT+AGG - chr6_1:33289457-33289476 Msa0883030:intron 30.0%
! ATGATATTCACCTTTGTTTG+AGG - chr6_1:33289585-33289604 Msa0883030:intron 30.0%
! TTGACTTTTGTAAGCAGAAA+AGG - chr6_1:33289651-33289670 Msa0883030:intron 30.0%
!! AGCTATTTTGAACTACACAA+AGG + chr6_1:33289894-33289913 None:intergenic 30.0%
GTAGTTCAAAATAGCTCAAT+TGG - chr6_1:33289898-33289917 Msa0883030:intron 30.0%
!!! AATAGCTCAATTGGTTTTTG+AGG - chr6_1:33289907-33289926 Msa0883030:intron 30.0%
AATTATGAACCACATAAAGG+TGG + chr6_1:33289987-33290006 None:intergenic 30.0%
TGAGGTTTGGATATTTAAGA+TGG - chr6_1:33290021-33290040 Msa0883030:intron 30.0%
GATAAAATGCCATCAAATAG+TGG - chr6_1:33290234-33290253 Msa0883030:CDS 30.0%
AAACTGTGTCAACTATTCAA+TGG + chr6_1:33290446-33290465 None:intergenic 30.0%
TATGAAATGCTAATGCCATT+GGG - chr6_1:33290467-33290486 Msa0883030:intron 30.0%
TGATTCACTATCAGTGATTA+TGG - chr6_1:33290926-33290945 Msa0883030:intron 30.0%
TTTCAAGACATCGTAATCAA+TGG + chr6_1:33291022-33291041 None:intergenic 30.0%
GTACAATGGCATTATATAAG+TGG - chr6_1:33291213-33291232 Msa0883030:intron 30.0%
CCAATGAAGAAATTAGACAA+AGG + chr6_1:33291510-33291529 None:intergenic 30.0%
CCTTTGTCTAATTTCTTCAT+TGG - chr6_1:33291507-33291526 Msa0883030:CDS 30.0%
! AGACTATTTGGTAGAGTTTT+TGG + chr6_1:33291899-33291918 None:intergenic 30.0%
TAAACACTTGTGAGACTATT+TGG + chr6_1:33291911-33291930 None:intergenic 30.0%
AACATCGAGATAGTTAAAAG+CGG + chr6_1:33291970-33291989 None:intergenic 30.0%
!!! GACATTGAAACGTTTTGATT+TGG - chr6_1:33291990-33292009 Msa0883030:five_prime_UTR 30.0%
ATCTTGAAAAGGATGTAGAA+AGG - chr6_1:33292041-33292060 Msa0883030:five_prime_UTR 30.0%
TGTGAATGTTAAGGTTGTGA+TGG + chr6_1:33288904-33288923 None:intergenic 35.0%
! TTTTTGTGGAGATTGAGGTT+GGG + chr6_1:33288947-33288966 None:intergenic 35.0%
!!! TTTTTTGTGGAGATTGAGGT+TGG + chr6_1:33288948-33288967 None:intergenic 35.0%
!!! TGGATTTTTTGTGGAGATTG+AGG + chr6_1:33288952-33288971 None:intergenic 35.0%
!! AAATGGGTTGTGTGAAAGAT+TGG + chr6_1:33288972-33288991 None:intergenic 35.0%
!!! AAGTGGGTTTTGAAGAGAAA+TGG + chr6_1:33289003-33289022 None:intergenic 35.0%
! TTCTGAGGGAAATTGAAAGT+GGG + chr6_1:33289019-33289038 None:intergenic 35.0%
! TTTCTGAGGGAAATTGAAAG+TGG + chr6_1:33289020-33289039 None:intergenic 35.0%
! GCATAAAACAATGGTGGAAA+TGG + chr6_1:33289045-33289064 None:intergenic 35.0%
!! TCCACCATTGTTTTATGCAA+AGG - chr6_1:33289047-33289066 Msa0883030:intron 35.0%
ACCTTTGCATAAAACAATGG+TGG + chr6_1:33289051-33289070 None:intergenic 35.0%
TTCAACCAAGCTTCAATACA+AGG + chr6_1:33289170-33289189 None:intergenic 35.0%
TGAAGCTTGGTTGAAAAGTT+TGG - chr6_1:33289175-33289194 Msa0883030:intron 35.0%
GAAGCTTGGTTGAAAAGTTT+GGG - chr6_1:33289176-33289195 Msa0883030:intron 35.0%
AAGCTTGGTTGAAAAGTTTG+GGG - chr6_1:33289177-33289196 Msa0883030:intron 35.0%
! TTTGGGGTTTAATCAGAGTA+AGG - chr6_1:33289193-33289212 Msa0883030:intron 35.0%
! TAAGGATGATAGGGCTTTTT+GGG - chr6_1:33289211-33289230 Msa0883030:intron 35.0%
GGGTTGTTAATAAGAGTGAT+TGG - chr6_1:33289231-33289250 Msa0883030:intron 35.0%
ATGTTACTGACCTCTATGTT+AGG - chr6_1:33289273-33289292 Msa0883030:intron 35.0%
!!! TTGGGTTTTTGAGGTTTTGA+TGG - chr6_1:33289354-33289373 Msa0883030:intron 35.0%
TATGTATGAATGTGCACACA+AGG - chr6_1:33289388-33289407 Msa0883030:intron 35.0%
! TATTCACCTTTGTTTGAGGT+TGG - chr6_1:33289589-33289608 Msa0883030:intron 35.0%
GGATGTTCGAGATGAAATTT+AGG - chr6_1:33289610-33289629 Msa0883030:intron 35.0%
ACGATTATATGTTGCTGATG+CGG - chr6_1:33289719-33289738 Msa0883030:intron 35.0%
!! TTTGCTTGCTTTTGTGTAGT+GGG - chr6_1:33289804-33289823 Msa0883030:intron 35.0%
TATGTATGAACATGTCCACA+AGG - chr6_1:33289854-33289873 Msa0883030:intron 35.0%
GAGTCTAATTCTAGATGTTG+CGG - chr6_1:33290112-33290131 Msa0883030:intron 35.0%
TAGCTAAAGCCACTATTTGA+TGG + chr6_1:33290246-33290265 None:intergenic 35.0%
! AATGTCCACAAACGCATTTT+GGG + chr6_1:33290386-33290405 None:intergenic 35.0%
! AAATGTCCACAAACGCATTT+TGG + chr6_1:33290387-33290406 None:intergenic 35.0%
CTATGAAATGCTAATGCCAT+TGG - chr6_1:33290466-33290485 Msa0883030:intron 35.0%
ATGAAATGCTAATGCCATTG+GGG - chr6_1:33290468-33290487 Msa0883030:intron 35.0%
CTACTTGACTTATAACCGAT+CGG - chr6_1:33290616-33290635 Msa0883030:intron 35.0%
AGAATGGAGAATAAACCGAT+CGG + chr6_1:33290634-33290653 None:intergenic 35.0%
ACTACTAAAGATCCTTATGC+GGG + chr6_1:33290683-33290702 None:intergenic 35.0%
CACTACTAAAGATCCTTATG+CGG + chr6_1:33290684-33290703 None:intergenic 35.0%
!! TCAGTTCTAGTTCTAGTACT+CGG + chr6_1:33290708-33290727 None:intergenic 35.0%
!!! GTTACGTTTTGACTTCGATT+TGG - chr6_1:33290738-33290757 Msa0883030:intron 35.0%
! GGTCCACTGTATTAGATTTT+AGG - chr6_1:33290947-33290966 Msa0883030:intron 35.0%
GATTGAAGACATTTCTGAAC+TGG - chr6_1:33291191-33291210 Msa0883030:intron 35.0%
ACATTTCTGAACTGGTACAA+TGG - chr6_1:33291199-33291218 Msa0883030:intron 35.0%
AGGATGTTTAAGCATCAGTT+GGG + chr6_1:33291356-33291375 None:intergenic 35.0%
AAGGATGTTTAAGCATCAGT+TGG + chr6_1:33291357-33291376 None:intergenic 35.0%
AGCTCATCTCAACTTATGTA+AGG + chr6_1:33291457-33291476 None:intergenic 35.0%
CAAACAGGACAGTATACAAT+GGG + chr6_1:33291697-33291716 None:intergenic 35.0%
ATTACGCTGTTTATCCAAAC+AGG + chr6_1:33291712-33291731 None:intergenic 35.0%
GAATGTTAAGGTTGTGATGG+TGG + chr6_1:33288901-33288920 None:intergenic 40.0%
GGTGGTGTTTGTGAATGTTA+AGG + chr6_1:33288913-33288932 None:intergenic 40.0%
CACTCATCTTCAGGAACTAA+GGG + chr6_1:33289098-33289117 None:intergenic 40.0%
! TACAAAGGCTTAGTCTTCTC+AGG + chr6_1:33289134-33289153 None:intergenic 40.0%
GGCAAGCTATGTGTATACAA+AGG + chr6_1:33289149-33289168 None:intergenic 40.0%
! GTAAGGATGATAGGGCTTTT+TGG - chr6_1:33289210-33289229 Msa0883030:intron 40.0%
!! TTGAGGTTTTGATGGTTGTG+TGG - chr6_1:33289362-33289381 Msa0883030:intron 40.0%
!! TGAGGTTTTGATGGTTGTGT+GGG - chr6_1:33289363-33289382 Msa0883030:intron 40.0%
GTATATATGAAGCGAAGCAC+CGG - chr6_1:33289413-33289432 Msa0883030:intron 40.0%
TTACTACGAGTGACAACGTA+TGG + chr6_1:33289453-33289472 None:intergenic 40.0%
GAACATCCAACCTCAAACAA+AGG + chr6_1:33289598-33289617 None:intergenic 40.0%
TGTCGCAGTTCTTGATATTG+CGG - chr6_1:33289690-33289709 Msa0883030:intron 40.0%
!! ATTTTAAAGGTCTGTGACCG+CGG + chr6_1:33289751-33289770 None:intergenic 40.0%
!! GTTTGCTTGCTTTTGTGTAG+TGG - chr6_1:33289803-33289822 Msa0883030:intron 40.0%
GTAAGTAGTCTAACACCTTG+TGG + chr6_1:33289872-33289891 None:intergenic 40.0%
CTATGCTATCCACCTTTATG+TGG - chr6_1:33289975-33289994 Msa0883030:intron 40.0%
CAAATAGTGCTGTATCGAAG+TGG - chr6_1:33290170-33290189 Msa0883030:CDS 40.0%
! GATAACACTAGCTTCAACCA+CGG - chr6_1:33290327-33290346 Msa0883030:intron 40.0%
!!! CCCTATTTTTAGGAATGTGG+GGG + chr6_1:33290541-33290560 None:intergenic 40.0%
CCCCCACATTCCTAAAAATA+GGG - chr6_1:33290538-33290557 Msa0883030:intron 40.0%
!!! GCCCTATTTTTAGGAATGTG+GGG + chr6_1:33290542-33290561 None:intergenic 40.0%
!!! GGCCCTATTTTTAGGAATGT+GGG + chr6_1:33290543-33290562 None:intergenic 40.0%
!! GGATAAAGGGCCCTATTTTT+AGG + chr6_1:33290551-33290570 None:intergenic 40.0%
AGGTTGGGAACTTGGATAAA+GGG + chr6_1:33290564-33290583 None:intergenic 40.0%
ACATACCAGTACTAGAGGTT+GGG + chr6_1:33290579-33290598 None:intergenic 40.0%
!! AGTACTGGTATGTCTCGTTA+TGG - chr6_1:33290586-33290605 Msa0883030:intron 40.0%
AACAAACCTCGTTGTTAGCA+CGG + chr6_1:33290660-33290679 None:intergenic 40.0%
!! CAGTTCTAGTTCTAGTACTC+GGG + chr6_1:33290707-33290726 None:intergenic 40.0%
! TTGTTGTTATTCCCTTGCAC+TGG - chr6_1:33290830-33290849 Msa0883030:intron 40.0%
ATAAGAGTCCATGTTGTGTC+TGG - chr6_1:33291119-33291138 Msa0883030:intron 40.0%
!! TTGTTGGTCTTCTAGCTTCT+TGG - chr6_1:33291637-33291656 Msa0883030:CDS 40.0%
CCAAACAGGACAGTATACAA+TGG + chr6_1:33291698-33291717 None:intergenic 40.0%
CCATTGTATACTGTCCTGTT+TGG - chr6_1:33291695-33291714 Msa0883030:CDS 40.0%
! GTTAAAAGCGGTTTGGACTT+TGG + chr6_1:33291958-33291977 None:intergenic 40.0%
CGAGATAGTTAAAAGCGGTT+TGG + chr6_1:33291965-33291984 None:intergenic 40.0%
!!! GAAACGTTTTGATTTGGTGC+AGG - chr6_1:33291996-33292015 Msa0883030:five_prime_UTR 40.0%
!! ACATCCTTTTCAAGATTCCC+AGG + chr6_1:33292037-33292056 None:intergenic 40.0%
TGAGGTTGGGAATGTGATGT+TGG + chr6_1:33288934-33288953 None:intergenic 45.0%
!! GGTGGAAATGGGTTTTCTGA+GGG + chr6_1:33289033-33289052 None:intergenic 45.0%
!! TGGTGGAAATGGGTTTTCTG+AGG + chr6_1:33289034-33289053 None:intergenic 45.0%
CCACTCATCTTCAGGAACTA+AGG + chr6_1:33289099-33289118 None:intergenic 45.0%
CCTTAGTTCCTGAAGATGAG+TGG - chr6_1:33289096-33289115 Msa0883030:intron 45.0%
!! TTCTGAAGCCACTCATCTTC+AGG + chr6_1:33289107-33289126 None:intergenic 45.0%
GCTTGCCTTGTATTGAAGCT+TGG - chr6_1:33289162-33289181 Msa0883030:intron 45.0%
TCTTGTGTCGTGACATGTGT+CGG - chr6_1:33289510-33289529 Msa0883030:intron 45.0%
GAACCAACACCTCTGATCAA+AGG + chr6_1:33289548-33289567 None:intergenic 45.0%
!! ATCAGAGGTGTTGGTTCTAC+AGG - chr6_1:33289551-33289570 Msa0883030:intron 45.0%
!! TCAGAGGTGTTGGTTCTACA+GGG - chr6_1:33289552-33289571 Msa0883030:intron 45.0%
GAGACAGCAGAAACCTGTTA+CGG - chr6_1:33290360-33290379 Msa0883030:intron 45.0%
GCCCCCACATTCCTAAAAAT+AGG - chr6_1:33290537-33290556 Msa0883030:intron 45.0%
!!! GGGCCCTATTTTTAGGAATG+TGG + chr6_1:33290544-33290563 None:intergenic 45.0%
GAGGTTGGGAACTTGGATAA+AGG + chr6_1:33290565-33290584 None:intergenic 45.0%
AGTACTAGAGGTTGGGAACT+TGG + chr6_1:33290572-33290591 None:intergenic 45.0%
AAGTTCCCAACCTCTAGTAC+TGG - chr6_1:33290571-33290590 Msa0883030:intron 45.0%
GACATACCAGTACTAGAGGT+TGG + chr6_1:33290580-33290599 None:intergenic 45.0%
ACGAGACATACCAGTACTAG+AGG + chr6_1:33290584-33290603 None:intergenic 45.0%
GTTGTTAGCACGGCATAGAA+TGG + chr6_1:33290650-33290669 None:intergenic 45.0%
ATGTTCGGTATAGCCCTGTT+CGG + chr6_1:33290805-33290824 None:intergenic 45.0%
CTTCTTGGATGTGAAACACG+TGG - chr6_1:33291652-33291671 Msa0883030:CDS 45.0%
TGGTGCAGGTATTTGAAGAG+TGG - chr6_1:33292010-33292029 Msa0883030:five_prime_UTR 45.0%
AGGTATTTGAAGAGTGGACC+TGG - chr6_1:33292016-33292035 Msa0883030:five_prime_UTR 45.0%
GGTATTTGAAGAGTGGACCT+GGG - chr6_1:33292017-33292036 Msa0883030:five_prime_UTR 45.0%
TGGACCTGGGAATCTTGAAA+AGG - chr6_1:33292030-33292049 Msa0883030:five_prime_UTR 45.0%
GACATTGAGAATGCTGTGCT+TGG - chr6_1:33292091-33292110 Msa0883030:five_prime_UTR 45.0%
ATTGAGAATGCTGTGCTTGG+AGG - chr6_1:33292094-33292113 Msa0883030:five_prime_UTR 45.0%
GGTTGGGAATGTGATGTTGG+TGG + chr6_1:33288931-33288950 None:intergenic 50.0%
!! TATGGTGTCGTGTCCTATGC+CGG + chr6_1:33289435-33289454 None:intergenic 50.0%
GTCACGACACAAGACACGTA+TGG + chr6_1:33289504-33289523 None:intergenic 50.0%
! ACGCCTTTGATCAGAGGTGT+TGG - chr6_1:33289542-33289561 Msa0883030:intron 50.0%
CTGTCTCTACTCTACAACCG+TGG + chr6_1:33290347-33290366 None:intergenic 50.0%
! AACGCATTTTGGGCCGTAAC+AGG + chr6_1:33290376-33290395 None:intergenic 50.0%
TACGGCCCAAAATGCGTTTG+TGG - chr6_1:33290378-33290397 Msa0883030:intron 50.0%
GGGGAAACTTCAAACCCCAA+TGG + chr6_1:33290485-33290504 None:intergenic 50.0%
AAGGCCACATCAGCAGAGAA+GGG + chr6_1:33290506-33290525 None:intergenic 50.0%
TAAGGCCACATCAGCAGAGA+AGG + chr6_1:33290507-33290526 None:intergenic 50.0%
TCTATGCCGTGCTAACAACG+AGG - chr6_1:33290651-33290670 Msa0883030:intron 50.0%
! ACGAGGTTTGTTCCCGCATA+AGG - chr6_1:33290668-33290687 Msa0883030:intron 50.0%
!! TGACTTCGATTTGGCTTCCG+AGG - chr6_1:33290747-33290766 Msa0883030:intron 50.0%
CGCACTAGACTGCAACTTCA+AGG - chr6_1:33290773-33290792 Msa0883030:intron 50.0%
TTCAAGGTTGTGCCCGAACA+GGG - chr6_1:33290789-33290808 Msa0883030:intron 50.0%
TGTTCGGTATAGCCCTGTTC+GGG + chr6_1:33290804-33290823 None:intergenic 50.0%
CCTAGCAAATGCCAGTGCAA+GGG + chr6_1:33290844-33290863 None:intergenic 50.0%
ACCTAGCAAATGCCAGTGCA+AGG + chr6_1:33290845-33290864 None:intergenic 50.0%
!! ATGAAGCGAAGCACCGGCAT+AGG - chr6_1:33289419-33289438 Msa0883030:intron 55.0%
! CCTCTGATCAAAGGCGTGTC+TGG + chr6_1:33289539-33289558 None:intergenic 55.0%
CCAGACACGCCTTTGATCAG+AGG - chr6_1:33289536-33289555 Msa0883030:intron 55.0%
TTCCCCCTTCTCTGCTGATG+TGG - chr6_1:33290499-33290518 Msa0883030:intron 55.0%
AGGCCACATCAGCAGAGAAG+GGG + chr6_1:33290505-33290524 None:intergenic 55.0%
! GCTGATGTGGCCTTAGCAGT+TGG - chr6_1:33290512-33290531 Msa0883030:intron 55.0%
TGCAGTCTAGTGCGCAACCT+CGG + chr6_1:33290767-33290786 None:intergenic 55.0%
CTTCAAGGTTGTGCCCGAAC+AGG - chr6_1:33290788-33290807 Msa0883030:intron 55.0%
! CCCTTGCACTGGCATTTGCT+AGG - chr6_1:33290841-33290860 Msa0883030:intron 55.0%
CACAGACGCCAGACACAACA+TGG + chr6_1:33291130-33291149 None:intergenic 55.0%
GTTGTGTCTGGCGTCTGTGT+CGG - chr6_1:33291131-33291150 Msa0883030:intron 55.0%
! CGTCTGTGTCGGTGTTTCAC+AGG - chr6_1:33291142-33291161 Msa0883030:intron 55.0%
TGCTGATGCGGCTTCAACCG+CGG - chr6_1:33289731-33289750 Msa0883030:intron 60.0%
GGCCACATCAGCAGAGAAGG+GGG + chr6_1:33290504-33290523 None:intergenic 60.0%
GTGGGGGCTTCCAACTGCTA+AGG + chr6_1:33290525-33290544 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 33288631 33292123 33288631 ID=Msa0883030;Name=Msa0883030
chr6_1 mRNA 33288631 33292123 33288631 ID=Msa0883030-mRNA-1;Parent=Msa0883030;Name=Msa0883030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=263|0|0.33|0.66|1|1|3|0|208
chr6_1 exon 33288631 33288726 33288631 ID=Msa0883030-mRNA-1:exon:8144;Parent=Msa0883030-mRNA-1
chr6_1 exon 33290162 33290291 33290162 ID=Msa0883030-mRNA-1:exon:8143;Parent=Msa0883030-mRNA-1
chr6_1 exon 33291460 33292123 33291460 ID=Msa0883030-mRNA-1:exon:8142;Parent=Msa0883030-mRNA-1
chr6_1 five_prime_UTR 33291861 33292123 33291861 ID=Msa0883030-mRNA-1:five_prime_utr;Parent=Msa0883030-mRNA-1
chr6_1 CDS 33291460 33291860 33291460 ID=Msa0883030-mRNA-1:cds;Parent=Msa0883030-mRNA-1
chr6_1 CDS 33290162 33290291 33290162 ID=Msa0883030-mRNA-1:cds;Parent=Msa0883030-mRNA-1
chr6_1 CDS 33288631 33288726 33288631 ID=Msa0883030-mRNA-1:cds;Parent=Msa0883030-mRNA-1
Gene Sequence

>Msa0883030

ATGTCCACCATCACAACCTTAACATTCACAAACACCACCAACATCACATTCCCAACCTCAATCTCCACAAAAAATCCAATCTTTCACACAACCCATTTCACAAAATCCATTTCTCTTCAAAACCCACTTTCAATTTCCCTCAGAAAACCCATTTCCACCATTGTTTTATGCAAAGGTTCAGTAGAATCAGAATCTGAAGAGCCCTTAGTTCCTGAAGATGAGTGGCTTCAGAAACTACCTGAGAAGACTAAGCCTTTGTATACACATAGCTTGCCTTGTATTGAAGCTTGGTTGAAAAGTTTGGGGTTTAATCAGAGTAAGGATGATAGGGCTTTTTGGGTTGTTAATAAGAGTGATTGGTGTGCTCAGCTTTCTCTTGATGTTACTGACCTCTATGTTAGTTTCTATGAAATGCTAATGCCATTGGGGTTTGAAGTTTCCCCCTTCTCTGCTGATGTGGCCTTAGCAGTTGGAAGCCCCCACATTCCTAAAAATAGGGCCCTTTATCCAAGTTCCCAACCTCTAGTACTGAGTGGACCTGGGAATCTTGAAAAGGATGTAGAAAGGAGATTCAGCTATGCTTTGAGCAGAGAAGACATTGAGAATGCTGTGCTTGGAGGACCATAG

Protein sequence

>Msa0883030

MSTITTLTFTNTTNITFPTSISTKNPIFHTTHFTKSISLQNPLSISLRKPISTIVLCKGSVESESEEPLVPEDEWLQKLPEKTKPLYTHSLPCIEAWLKSLGFNQSKDDRAFWVVNKSDWCAQLSLDVTDLYVSFYEMLMPLGFEVSPFSADVALAVGSPHIPKNRALYPSSQPLVLSGPGNLEKDVERRFSYALSREDIENAVLGGP*