AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463970 MtrunA17_Chr7g0261561 97.151 737 21 0 1 737 1 737 0.0 1480
Msa1463970 MtrunA17_Chr4g0041761 55.867 750 311 10 3 736 13 758 0.0 840
Msa1463970 MtrunA17_Chr1g0187391 51.389 576 217 7 164 735 3 519 0.0 601
Msa1463970 MtrunA17_Chr5g0408241 42.273 783 390 14 7 737 56 828 0.0 570
Msa1463970 MtrunA17_Chr8g0369761 42.933 757 378 13 25 737 63 809 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463970 AT4G28570.1 58.681 743 289 7 5 737 11 745 0.0 856
Msa1463970 AT4G28570.2 58.681 743 289 7 5 737 11 745 0.0 856
Msa1463970 AT3G23410.1 56.946 727 292 9 25 734 18 740 0.0 820
Msa1463970 AT3G23410.2 58.744 669 265 6 75 734 6 672 0.0 793
Msa1463970 AT1G03990.1 54.133 750 317 12 6 736 13 754 0.0 775
Msa1463970 AT4G19380.2 40.721 749 400 12 18 737 34 767 7.78e-174 517
Msa1463970 AT4G19380.1 41.081 740 392 12 27 737 1 725 2.59e-173 514

Find 176 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGACTTCTTTGTTTAA+TGG 0.132897 tig0043805:-3932 Msa1463970:intergenic
TGGATTCTGTCATTCAAATT+AGG 0.139329 tig0043805:+4827 Msa1463970:CDS
AAGGAAGTCTTTAAGAATTT+TGG 0.142745 tig0043805:+6798 Msa1463970:CDS
CAAATTCTCTGAGATTTCTT+TGG 0.197447 tig0043805:+4904 Msa1463970:CDS
TAGTTACTTTGGATTCTATT+TGG 0.246811 tig0043805:-6351 Msa1463970:intergenic
CTCACCAATGGCGTTGCTTC+TGG 0.251725 tig0043805:-4794 Msa1463970:intergenic
AAAATCTTAGAATTGGATTA+AGG 0.256561 tig0043805:+6779 Msa1463970:CDS
TTGTAGAACCGGAGATAAAA+AGG 0.259716 tig0043805:+6159 Msa1463970:CDS
CCATCCAGTTCAATTTGCTT+GGG 0.271230 tig0043805:+6459 Msa1463970:CDS
ACAGATTCAGTAATCTTAGA+TGG 0.287381 tig0043805:+3660 None:intergenic
GGATTCTGTCATTCAAATTA+GGG 0.293627 tig0043805:+4828 Msa1463970:CDS
ATTATAGAAGCACCTGCTTT+AGG 0.296752 tig0043805:+6586 Msa1463970:CDS
TCATCCTTCTATACAACTTC+TGG 0.300151 tig0043805:+3968 Msa1463970:CDS
TTAATGGAATGGATGGAAAA+AGG 0.300921 tig0043805:-3916 Msa1463970:intergenic
GACAGAGAAAATCTTAGAAT+TGG 0.302166 tig0043805:+6772 Msa1463970:CDS
AAGTTATGATTCCTCCTTCA+TGG 0.302332 tig0043805:-6522 Msa1463970:intergenic
CATTGGTGAGGTGGATTCTA+TGG 0.309210 tig0043805:+4807 Msa1463970:CDS
TGAAGGTTCCTTCCAATGTT+TGG 0.313050 tig0043805:-6433 Msa1463970:intergenic
AAAACAAATGGATACCTCTA+AGG 0.315779 tig0043805:+4963 Msa1463970:CDS
CTTCATCTTCAGTGACTTCA+AGG 0.331159 tig0043805:-5616 Msa1463970:intergenic
TCCATCCAGTTCAATTTGCT+TGG 0.335666 tig0043805:+6458 Msa1463970:CDS
CTTGATACTGTCACGGTTGT+CGG 0.340575 tig0043805:+6913 Msa1463970:CDS
GTGGAGGTACTGCTATAAAC+TGG 0.344574 tig0043805:+5882 Msa1463970:CDS
TTGTCTCTATTAGTCCTTCC+TGG 0.345240 tig0043805:-5547 Msa1463970:intergenic
AAAGTGATCATCCTAGAAAA+AGG 0.349522 tig0043805:+5734 Msa1463970:CDS
CTGTTGAGGTTGGAACTTAT+AGG 0.352665 tig0043805:+6833 Msa1463970:CDS
AATCCAATGTGGAAGGCAAT+AGG 0.357171 tig0043805:+5476 Msa1463970:CDS
AGGGATCAAAGAAGAAGAAT+TGG 0.361473 tig0043805:+6882 Msa1463970:CDS
TGTCTCTAACCAATGCAAAA+AGG 0.362568 tig0043805:-6693 Msa1463970:intergenic
CATTGTCCAAAGTTCACTTC+TGG 0.369671 tig0043805:-6947 Msa1463970:intergenic
TGCTGTTACGGTTGTAGAAC+CGG 0.371663 tig0043805:+6148 Msa1463970:CDS
GTTTAGTTCTGCACATCAAA+TGG 0.373441 tig0043805:+6969 Msa1463970:CDS
CGGAAAGGGTGTGAGAGAAT+TGG 0.375092 tig0043805:+6070 Msa1463970:CDS
TCCTGGAGAGGCCTCTTCTT+CGG 0.378893 tig0043805:-5530 Msa1463970:intergenic
AACCTCTCAGATGCATGTAT+TGG 0.383483 tig0043805:+3877 Msa1463970:CDS
AACACAAACACCGCCCTTAG+AGG 0.384539 tig0043805:-4977 Msa1463970:intergenic
GGCCTTTCTCACTCAGGGAT+TGG 0.385174 tig0043805:-5595 Msa1463970:intergenic
CTCTTTGCTTGCATTGGAAG+TGG 0.385444 tig0043805:+4870 Msa1463970:CDS
ACATGATGAAATAGTTACTT+TGG 0.389119 tig0043805:-6362 Msa1463970:intergenic
GGATTGGATTAATGTAGAAT+TGG 0.391272 tig0043805:-5579 Msa1463970:intergenic
TTCTCAAGATTATTCTTCCT+TGG 0.392128 tig0043805:+5769 Msa1463970:CDS
GAGGGTGCAGTTGATGAGAA+TGG 0.395238 tig0043805:+7021 Msa1463970:CDS
GACTTCTTTGTTTAATGGAA+TGG 0.401945 tig0043805:-3927 Msa1463970:intergenic
TATTGCGGTTCGTGCTGTTA+CGG 0.407724 tig0043805:+6136 Msa1463970:CDS
TGATGAGAATGGAGAAAGTT+GGG 0.414388 tig0043805:+7032 Msa1463970:CDS
GTGGAACTCTTTGCTTGCAT+TGG 0.416289 tig0043805:+4864 Msa1463970:CDS
GCTTTCAAAATCAAGTTCTT+CGG 0.428581 tig0043805:+6050 Msa1463970:CDS
CGTCTACCTCCTCTCAATAG+AGG 0.431157 tig0043805:-3824 Msa1463970:intergenic
ATGAACGAGCTTTATGAATC+AGG 0.431908 tig0043805:+5803 Msa1463970:CDS
TTCTTATAGACTTGATCAAA+TGG 0.433097 tig0043805:+6750 Msa1463970:CDS
TCAGAGAATTTGAGAACAAA+AGG 0.433449 tig0043805:-4893 Msa1463970:intergenic
TTTGCATTGGTTAGAGACAT+AGG 0.434303 tig0043805:+6697 Msa1463970:CDS
CATTCCTTCTTAACAGAGTC+AGG 0.435806 tig0043805:-5923 Msa1463970:intergenic
TGCAACTCCTCCACCGCTAC+CGG 0.435895 tig0043805:-5684 Msa1463970:intergenic
TAAAATTGCAGAATCACTTA+AGG 0.439016 tig0043805:+7155 Msa1463970:CDS
ATAATAGAAGATGGAAAGAA+TGG 0.440166 tig0043805:+6259 Msa1463970:CDS
CATGATGTAACTAGTATTGT+TGG 0.442797 tig0043805:+7272 Msa1463970:three_prime_UTR
ATCCAATGTGGAAGGCAATA+GGG 0.443972 tig0043805:+5477 Msa1463970:CDS
AAAATCAAGTTCTTCGGAAA+GGG 0.445304 tig0043805:+6056 Msa1463970:CDS
AATGGTCAAAAGAAAACAAA+TGG 0.451166 tig0043805:+4951 Msa1463970:CDS
GATCAAAGAAGAAGAATTGG+AGG 0.454354 tig0043805:+6885 Msa1463970:CDS
AAATGCGATGCTGTCATTGT+TGG 0.456225 tig0043805:+5659 Msa1463970:CDS
GTATTAGTTCCATGGATCTC+AGG 0.457639 tig0043805:+6625 Msa1463970:CDS
ACCGAAGAAGAGGCCTCTCC+AGG 0.458071 tig0043805:+5529 Msa1463970:CDS
AGAACCAGAAGTTGTATAGA+AGG 0.460921 tig0043805:-3972 Msa1463970:intergenic
TAGCCCCAAGCAAATTGAAC+TGG 0.461727 tig0043805:-6463 Msa1463970:intergenic
CGACGGTAAAATGATGATCT+TGG 0.462702 tig0043805:+5844 Msa1463970:CDS
GCGGCGGGAGCTGTTGAGGT+TGG 0.464809 tig0043805:+6823 Msa1463970:CDS
GAGAAATTCATAATAGAAGA+TGG 0.465338 tig0043805:+6250 Msa1463970:CDS
CAAAATCAAGTTCTTCGGAA+AGG 0.466408 tig0043805:+6055 Msa1463970:CDS
TACCCTATTGCCTTCCACAT+TGG 0.470515 tig0043805:-5479 Msa1463970:intergenic
GTTGGTTCCGGTAGCGGTGG+AGG 0.473180 tig0043805:+5677 Msa1463970:CDS
TTGATGAGAATGGAGAAAGT+TGG 0.475999 tig0043805:+7031 Msa1463970:CDS
CAAATGGGAAGTTGTAGAAT+GGG 0.480556 tig0043805:+6985 Msa1463970:CDS
GTAGATTGAATGGTTACCAT+AGG 0.483305 tig0043805:-7114 Msa1463970:intergenic
GTCATTGTTGGTTCCGGTAG+CGG 0.485398 tig0043805:+5671 Msa1463970:CDS
ACTAATACTGAAAATGATCC+AGG 0.486166 tig0043805:-6610 Msa1463970:intergenic
TTGGTTGATGCTGTTGAAAA+CGG 0.486532 tig0043805:+6199 Msa1463970:CDS
TCAAATGGGAAGTTGTAGAA+TGG 0.486816 tig0043805:+6984 Msa1463970:CDS
ACAGTATGCTGTAGATTGAA+TGG 0.487635 tig0043805:-7124 Msa1463970:intergenic
TTCAAGGCCTTTCTCACTCA+GGG 0.488063 tig0043805:-5600 Msa1463970:intergenic
CATCCAGTTCAATTTGCTTG+GGG 0.488374 tig0043805:+6460 Msa1463970:CDS
ATCCAATCCCTGAGTGAGAA+AGG 0.490284 tig0043805:+5593 Msa1463970:CDS
TTTAGTTCTGCACATCAAAT+GGG 0.491700 tig0043805:+6970 Msa1463970:CDS
TTGCAAAGAGTTAAGAGTAA+TGG 0.492327 tig0043805:+3790 Msa1463970:exon
CTTCTATACTTTGTTCTCGA+GGG 0.495918 tig0043805:+5015 Msa1463970:CDS
TCTTTGTTTAATGGAATGGA+TGG 0.497110 tig0043805:-3923 Msa1463970:intergenic
GGAGAAAGTTGGGAAGCAAA+AGG 0.497184 tig0043805:+7042 Msa1463970:CDS
TTGGTTAGAGACATAGGATC+AGG 0.497758 tig0043805:+6703 Msa1463970:CDS
TACAAAATCCAAACATTGGA+AGG 0.499960 tig0043805:+6425 Msa1463970:CDS
GAAAACATGACACACTTAAG+TGG 0.500258 tig0043805:+6493 Msa1463970:CDS
AAAGAACCTCATCAGGGAAT+GGG 0.503886 tig0043805:-4000 Msa1463970:intergenic
AACACCTGACTCTGTTAAGA+AGG 0.504540 tig0043805:+5919 Msa1463970:CDS
TCAAAGTATATTGTGTCTGT+TGG 0.507030 tig0043805:+7326 Msa1463970:three_prime_UTR
ACAAAGAGAAAGAATTGCTC+AGG 0.508005 tig0043805:+6283 Msa1463970:CDS
GATGCTGTCATTGTTGGTTC+CGG 0.509168 tig0043805:+5665 Msa1463970:CDS
CTCTGATTATCAATCTGCTA+TGG 0.509218 tig0043805:+5979 Msa1463970:CDS
GGAGGTAGACGAAAAGAGAA+AGG 0.509307 tig0043805:+3836 Msa1463970:CDS
TAAACACAAATTCCCATGTT+GGG 0.509391 tig0043805:+7377 Msa1463970:three_prime_UTR
TCAGGAGAAGTAAGAAGTGA+AGG 0.509587 tig0043805:+6721 Msa1463970:CDS
TCTTCTATACTTTGTTCTCG+AGG 0.514200 tig0043805:+5014 Msa1463970:CDS
TGCAGTTGGTGTTAACCCTA+TGG 0.514783 tig0043805:+7098 Msa1463970:CDS
ATTGAACTGGATGGAGATGA+AGG 0.516885 tig0043805:-6450 Msa1463970:intergenic
ATGGGTGAGAATGAAGAAGA+GGG 0.517130 tig0043805:+7003 Msa1463970:CDS
AAAAGTTGAAACCGAAGAAG+AGG 0.517257 tig0043805:+5519 Msa1463970:CDS
GAGAAAGTTGGGAAGCAAAA+GGG 0.519118 tig0043805:+7043 Msa1463970:CDS
TCAGTTCCCATTCCCTGATG+AGG 0.520253 tig0043805:+3994 Msa1463970:CDS
TTGCTGCAGACAGATGTAGA+TGG 0.521268 tig0043805:+5449 Msa1463970:intron
AGTCCACTAGAAATCATTAG+AGG 0.522212 tig0043805:-6403 Msa1463970:intergenic
AACGGCGCAGTTATCCTCAC+TGG 0.522905 tig0043805:+6217 Msa1463970:CDS
AAAAGAACCTCATCAGGGAA+TGG 0.523565 tig0043805:-4001 Msa1463970:intergenic
CTTCAAGGCCTTTCTCACTC+AGG 0.525253 tig0043805:-5601 Msa1463970:intergenic
AATTGCTCAGGAGTGATAGC+TGG 0.531778 tig0043805:+6295 Msa1463970:CDS
CAGATTCAGTAATCTTAGAT+GGG 0.532598 tig0043805:+3661 None:intergenic
GATTCAGTATGCAGAAGGAT+TGG 0.536961 tig0043805:+6001 Msa1463970:CDS
GGTAAAATGATGATCTTGGC+TGG 0.539807 tig0043805:+5848 Msa1463970:CDS
AAAAGGGTACTGACTCAACT+TGG 0.540723 tig0043805:+6176 Msa1463970:CDS
GGGTTAACACCAACTGCACT+AGG 0.549107 tig0043805:-7093 Msa1463970:intergenic
ATCTTGGCTGGCTCAACAGT+CGG 0.554171 tig0043805:+5860 Msa1463970:CDS
AAGCAACGCCATTGGTGAGG+TGG 0.554657 tig0043805:+4798 Msa1463970:CDS
AATGGGTGAGAATGAAGAAG+AGG 0.555197 tig0043805:+7002 Msa1463970:CDS
GGTTGCGGCGGGAGCTGTTG+AGG 0.556378 tig0043805:+6819 Msa1463970:CDS
AAAGAGAAAGGTTATAGCCA+TGG 0.560705 tig0043805:+3848 Msa1463970:CDS
GGACTACAAAATCCAAACAT+TGG 0.561944 tig0043805:+6421 Msa1463970:CDS
CTGACTCTGTTAAGAAGGAA+TGG 0.564307 tig0043805:+5924 Msa1463970:CDS
ATTGTTGGTTCCGGTAGCGG+TGG 0.565231 tig0043805:+5674 Msa1463970:CDS
GTTGGAACTTATAGGAGTGA+TGG 0.565498 tig0043805:+6841 Msa1463970:CDS
AACACTAGTTCTACCCAACA+TGG 0.565751 tig0043805:-7390 Msa1463970:intergenic
GCTGGCTCAACAGTCGGTGG+AGG 0.567887 tig0043805:+5866 Msa1463970:CDS
AAAGTAACTATTTCATCATG+TGG 0.568702 tig0043805:+6364 Msa1463970:CDS
TAGATTGAATGGTTACCATA+GGG 0.569161 tig0043805:-7113 Msa1463970:intergenic
GTTCATCGCTGAACTTTCCA+AGG 0.572297 tig0043805:-5786 Msa1463970:intergenic
TCTATTAGTCCTTCCTGGAG+AGG 0.575506 tig0043805:-5542 Msa1463970:intergenic
GTGGAAGGCAATAGGGTACA+AGG 0.575769 tig0043805:+5484 Msa1463970:CDS
TGCACCAGAAGCAACGCCAT+TGG 0.577386 tig0043805:+4790 Msa1463970:CDS
AATGATCCAGGTCCTAAAGC+AGG 0.580745 tig0043805:-6598 Msa1463970:intergenic
AAGTTGTATAGAAGGATGAG+AGG 0.581610 tig0043805:-3964 Msa1463970:intergenic
GCTGCAATTCTTGCAAACTC+AGG 0.581743 tig0043805:+5707 Msa1463970:CDS
CTAAACACAAATTCCCATGT+TGG 0.582034 tig0043805:+7376 Msa1463970:three_prime_UTR
CTATGGATTCAGTATGCAGA+AGG 0.583898 tig0043805:+5996 Msa1463970:CDS
GAAGCACCTGCTTTAGGACC+TGG 0.586542 tig0043805:+6592 Msa1463970:CDS
GGAGTTTCTTGATACTGTCA+CGG 0.587716 tig0043805:+6906 Msa1463970:CDS
TGGCTATAATCCAATGTGGA+AGG 0.588681 tig0043805:+5469 Msa1463970:CDS
GGGTACTGACTCAACTTGGT+TGG 0.591888 tig0043805:+6180 Msa1463970:CDS
ATATCGAGTCCTGAGATCCA+TGG 0.595456 tig0043805:-6634 Msa1463970:intergenic
GCTTCAGAAGATCATTATTG+CGG 0.597873 tig0043805:+6121 Msa1463970:CDS
GAGTGATAGCTGGAACAAGT+TGG 0.601974 tig0043805:+6305 Msa1463970:CDS
CATAGAATCCACCTCACCAA+TGG 0.602414 tig0043805:-4806 Msa1463970:intergenic
GATTCTCATCCTCTATTGAG+AGG 0.604922 tig0043805:+3815 Msa1463970:CDS
AAAGGGTTGTATGTGTGTGA+TGG 0.608484 tig0043805:+7060 Msa1463970:CDS
AAACAAATGGATACCTCTAA+GGG 0.609941 tig0043805:+4964 Msa1463970:CDS
CCCAAGCAAATTGAACTGGA+TGG 0.610780 tig0043805:-6459 Msa1463970:intergenic
GATACTGTCACGGTTGTCGG+TGG 0.614491 tig0043805:+6916 Msa1463970:CDS
ACTCGATATGAAAGACAGAA+TGG 0.616506 tig0043805:+6648 Msa1463970:CDS
AAGAAGAGGCCTCTCCAGGA+AGG 0.616993 tig0043805:+5533 Msa1463970:CDS
TGATAGCTGGAACAAGTTGG+AGG 0.618232 tig0043805:+6308 Msa1463970:CDS
TTGGCTGGCTCAACAGTCGG+TGG 0.619706 tig0043805:+5863 Msa1463970:CDS
CCTCCTCTAATGATTTCTAG+TGG 0.623746 tig0043805:+6400 Msa1463970:CDS
TGGAGGTACTGCTATAAACT+GGG 0.626757 tig0043805:+5883 Msa1463970:CDS
TTAAGTGGTAATAACCATGA+AGG 0.627164 tig0043805:+6508 Msa1463970:CDS
AACGAGCTTTATGAATCAGG+TGG 0.631552 tig0043805:+5806 Msa1463970:CDS
AGTGGTAATAACCATGAAGG+AGG 0.637889 tig0043805:+6511 Msa1463970:CDS
TAATCAGAGCTTGTGAAAAG+CGG 0.638436 tig0043805:-5965 Msa1463970:intergenic
CAGAAGCAACGCCATTGGTG+AGG 0.639836 tig0043805:+4795 Msa1463970:CDS
CCACTAGAAATCATTAGAGG+AGG 0.647396 tig0043805:-6400 Msa1463970:intergenic
GGAATCATGCCAACTCTCGA+CGG 0.650023 tig0043805:+5827 Msa1463970:CDS
TCTCATCCTCTATTGAGAGG+AGG 0.658446 tig0043805:+3818 Msa1463970:CDS
TGTGTCTGTTGGAACATGTG+TGG 0.669046 tig0043805:+7337 Msa1463970:three_prime_UTR
AGCCAATACATGCATCTGAG+AGG 0.679202 tig0043805:-3879 Msa1463970:intergenic
CAAAGTTCACTTCTGGACCG+CGG 0.689159 tig0043805:-6940 Msa1463970:intergenic
CAAATGGATACCTCTAAGGG+CGG 0.696692 tig0043805:+4967 Msa1463970:CDS
ACACTAGTTCTACCCAACAT+GGG 0.697627 tig0043805:-7389 Msa1463970:intergenic
TAGATGGCTATAATCCAATG+TGG 0.704268 tig0043805:+5465 Msa1463970:CDS
TGTGACAGATAAATGCAACA+AGG 0.712817 tig0043805:+6024 Msa1463970:CDS
TCTCAGCTCTACATCCAGTG+AGG 0.723767 tig0043805:-6231 Msa1463970:intergenic
GAAGGCAATAGGGTACAAGG+TGG 0.747351 tig0043805:+5487 Msa1463970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTTAATAAAAACAT+TGG + tig0043805:5407-5426 Msa1463970:intron 10.0%
!!! TCATTTTTAATAAAAACATT+GGG + tig0043805:5408-5427 Msa1463970:intron 10.0%
!! GATTAAAAAATGGATAAAAT+TGG - tig0043805:4030-4049 Msa1463970:intergenic 15.0%
!!! TTTTTTTTCATATGAGTATT+AGG + tig0043805:4736-4755 Msa1463970:intron 15.0%
!! GCATTATTAAAATGATAAAA+TGG - tig0043805:5054-5073 Msa1463970:intergenic 15.0%
!!! AGATTAGGCTTTTTTTTTAA+TGG - tig0043805:4309-4328 Msa1463970:intergenic 20.0%
!! ATCTTTCATTAACATTTGAA+AGG + tig0043805:4463-4482 Msa1463970:intron 20.0%
!!! AGACTTTATTTATGTTCAAA+AGG - tig0043805:4577-4596 Msa1463970:intergenic 20.0%
!! ATTATTGAACTAAACTAGTA+AGG - tig0043805:4680-4699 Msa1463970:intergenic 20.0%
!!! TCATTTTAATAATGCTCATA+TGG + tig0043805:5059-5078 Msa1463970:intron 20.0%
!! ATATGATCTACATACAAAAT+TGG + tig0043805:5309-5328 Msa1463970:intron 20.0%
!! AAATTGGTCATTTAAAGAAA+TGG + tig0043805:5325-5344 Msa1463970:intron 20.0%
!! AAAATCTTAGAATTGGATTA+AGG + tig0043805:6779-6798 Msa1463970:CDS 20.0%
! TATCTATCATGTCATATAAG+TGG + tig0043805:4069-4088 Msa1463970:intron 25.0%
! AAAATCCTGTATCAATGTTT+CGG + tig0043805:4227-4246 Msa1463970:intron 25.0%
! CTAAATATCAGTGAAAGATT+AGG - tig0043805:4324-4343 Msa1463970:intergenic 25.0%
! TCTTTCACTGATATTTAGAA+AGG + tig0043805:4326-4345 Msa1463970:intron 25.0%
! AAAAAGCAAAACATGATGTT+TGG - tig0043805:4543-4562 Msa1463970:intergenic 25.0%
!!! GAGAAGAAATTTTCAAGAAA+TGG + tig0043805:4933-4952 Msa1463970:CDS 25.0%
! AATGGTCAAAAGAAAACAAA+TGG + tig0043805:4951-4970 Msa1463970:CDS 25.0%
! CTCATTGAATAACCTAAAAT+GGG - tig0043805:5141-5160 Msa1463970:intergenic 25.0%
! ACTCATTGAATAACCTAAAA+TGG - tig0043805:5142-5161 Msa1463970:intergenic 25.0%
!!! GATTTTCATCAGCTTTATAA+CGG - tig0043805:5371-5390 Msa1463970:intergenic 25.0%
! GTTATAAAGCTGATGAAAAT+CGG + tig0043805:5370-5389 Msa1463970:intron 25.0%
!! AAGCGGTAGTTTATATTTTT+CGG - tig0043805:5951-5970 Msa1463970:intergenic 25.0%
! GAGAAATTCATAATAGAAGA+TGG + tig0043805:6250-6269 Msa1463970:CDS 25.0%
! ATAATAGAAGATGGAAAGAA+TGG + tig0043805:6259-6278 Msa1463970:CDS 25.0%
!! TAGTTACTTTGGATTCTATT+TGG - tig0043805:6354-6373 Msa1463970:intergenic 25.0%
! ACATGATGAAATAGTTACTT+TGG - tig0043805:6365-6384 Msa1463970:intergenic 25.0%
! AAAGTAACTATTTCATCATG+TGG + tig0043805:6364-6383 Msa1463970:CDS 25.0%
! TTCTTATAGACTTGATCAAA+TGG + tig0043805:6750-6769 Msa1463970:CDS 25.0%
!!! AAGGAAGTCTTTAAGAATTT+TGG + tig0043805:6798-6817 Msa1463970:CDS 25.0%
! GACAAAAAATCAAATGTGAA+GGG + tig0043805:6863-6882 Msa1463970:CDS 25.0%
! TAAAATTGCAGAATCACTTA+AGG + tig0043805:7155-7174 Msa1463970:CDS 25.0%
TTGCAAAGAGTTAAGAGTAA+TGG + tig0043805:3790-3809 Msa1463970:exon 30.0%
TAATGGAATGGATGGAAAAA+GGG - tig0043805:3918-3937 Msa1463970:intergenic 30.0%
TTAATGGAATGGATGGAAAA+AGG - tig0043805:3919-3938 Msa1463970:intergenic 30.0%
! TCTTTGTTTAATGGAATGGA+TGG - tig0043805:3926-3945 Msa1463970:intergenic 30.0%
! GACTTCTTTGTTTAATGGAA+TGG - tig0043805:3930-3949 Msa1463970:intergenic 30.0%
! TGAGAGACTTCTTTGTTTAA+TGG - tig0043805:3935-3954 Msa1463970:intergenic 30.0%
TCTGTATCAGTATTTCATAG+TGG + tig0043805:4257-4276 Msa1463970:intron 30.0%
!! TGATGTTTGGTAACGAATTT+CGG - tig0043805:4530-4549 Msa1463970:intergenic 30.0%
TGGATTCTGTCATTCAAATT+AGG + tig0043805:4827-4846 Msa1463970:CDS 30.0%
GGATTCTGTCATTCAAATTA+GGG + tig0043805:4828-4847 Msa1463970:CDS 30.0%
TCAGAGAATTTGAGAACAAA+AGG - tig0043805:4896-4915 Msa1463970:intergenic 30.0%
!! CAAATTCTCTGAGATTTCTT+TGG + tig0043805:4904-4923 Msa1463970:CDS 30.0%
AAAACAAATGGATACCTCTA+AGG + tig0043805:4963-4982 Msa1463970:CDS 30.0%
AAACAAATGGATACCTCTAA+GGG + tig0043805:4964-4983 Msa1463970:CDS 30.0%
! AACATTATGTCACCCATTTT+AGG + tig0043805:5126-5145 Msa1463970:intron 30.0%
!! TCCAGAAAAGTGTTTGAAAA+AGG + tig0043805:5185-5204 Msa1463970:intron 30.0%
!! CCAGAAAAGTGTTTGAAAAA+GGG + tig0043805:5186-5205 Msa1463970:intron 30.0%
TTTCACGGTTAAACCAAAAT+GGG - tig0043805:5262-5281 Msa1463970:intergenic 30.0%
GGATTGGATTAATGTAGAAT+TGG - tig0043805:5582-5601 Msa1463970:intergenic 30.0%
AAAGTGATCATCCTAGAAAA+AGG + tig0043805:5734-5753 Msa1463970:CDS 30.0%
! CAAAATACTCTCCTTTTTCT+AGG - tig0043805:5748-5767 Msa1463970:intergenic 30.0%
TTCTCAAGATTATTCTTCCT+TGG + tig0043805:5769-5788 Msa1463970:CDS 30.0%
GCTTTCAAAATCAAGTTCTT+CGG + tig0043805:6050-6069 Msa1463970:CDS 30.0%
AAAATCAAGTTCTTCGGAAA+GGG + tig0043805:6056-6075 Msa1463970:CDS 30.0%
TACAAAATCCAAACATTGGA+AGG + tig0043805:6425-6444 Msa1463970:CDS 30.0%
! TTAAGTGTGTCATGTTTTCA+GGG - tig0043805:6492-6511 Msa1463970:intergenic 30.0%
TTAAGTGGTAATAACCATGA+AGG + tig0043805:6508-6527 Msa1463970:CDS 30.0%
!!! TTCTATAATGATTTTTGGCG+TGG - tig0043805:6575-6594 Msa1463970:intergenic 30.0%
! GGTGCTTCTATAATGATTTT+TGG - tig0043805:6580-6599 Msa1463970:intergenic 30.0%
ACTAATACTGAAAATGATCC+AGG - tig0043805:6613-6632 Msa1463970:intergenic 30.0%
! CATTTTCAGTATTAGTTCCA+TGG + tig0043805:6617-6636 Msa1463970:CDS 30.0%
GACAGAGAAAATCTTAGAAT+TGG + tig0043805:6772-6791 Msa1463970:CDS 30.0%
!!! GTCTTTAAGAATTTTGGTTG+CGG + tig0043805:6804-6823 Msa1463970:CDS 30.0%
GGACAAAAAATCAAATGTGA+AGG + tig0043805:6862-6881 Msa1463970:CDS 30.0%
!! TTTAGTTCTGCACATCAAAT+GGG + tig0043805:6970-6989 Msa1463970:CDS 30.0%
TAGATTGAATGGTTACCATA+GGG - tig0043805:7116-7135 Msa1463970:intergenic 30.0%
CATGATGTAACTAGTATTGT+TGG + tig0043805:7272-7291 Msa1463970:three_prime_UTR 30.0%
TCAAAGTATATTGTGTCTGT+TGG + tig0043805:7326-7345 Msa1463970:three_prime_UTR 30.0%
TAAACACAAATTCCCATGTT+GGG + tig0043805:7377-7396 Msa1463970:three_prime_UTR 30.0%
GTTGTGTGAATTGAAAAAAG+TGG + tig0043805:7410-7429 Msa1463970:three_prime_UTR 30.0%
AAAGAGAAAGGTTATAGCCA+TGG + tig0043805:3848-3867 Msa1463970:CDS 35.0%
TCTGAGAGGTTAAAAATCCA+TGG - tig0043805:3868-3887 Msa1463970:intergenic 35.0%
AAGTTGTATAGAAGGATGAG+AGG - tig0043805:3967-3986 Msa1463970:intergenic 35.0%
TCATCCTTCTATACAACTTC+TGG + tig0043805:3968-3987 Msa1463970:CDS 35.0%
AGAACCAGAAGTTGTATAGA+AGG - tig0043805:3975-3994 Msa1463970:intergenic 35.0%
!!! TTAGGGACACTTTTTCTTTG+TGG + tig0043805:4845-4864 Msa1463970:CDS 35.0%
TCTTCTATACTTTGTTCTCG+AGG + tig0043805:5014-5033 Msa1463970:CDS 35.0%
CTTCTATACTTTGTTCTCGA+GGG + tig0043805:5015-5034 Msa1463970:CDS 35.0%
!!! CCCTTTTTCAAACACTTTTC+TGG - tig0043805:5189-5208 Msa1463970:intergenic 35.0%
GTTTCACGGTTAAACCAAAA+TGG - tig0043805:5263-5282 Msa1463970:intergenic 35.0%
!!! TTTTGGTTTAACCGTGAAAC+TGG + tig0043805:5263-5282 Msa1463970:intron 35.0%
TCACATGTTTACCAGTTTCA+CGG - tig0043805:5277-5296 Msa1463970:intergenic 35.0%
TAGATGGCTATAATCCAATG+TGG + tig0043805:5465-5484 Msa1463970:CDS 35.0%
AAAAGTTGAAACCGAAGAAG+AGG + tig0043805:5519-5538 Msa1463970:CDS 35.0%
! ATGAACGAGCTTTATGAATC+AGG + tig0043805:5803-5822 Msa1463970:CDS 35.0%
TAATCAGAGCTTGTGAAAAG+CGG - tig0043805:5968-5987 Msa1463970:intergenic 35.0%
CTCTGATTATCAATCTGCTA+TGG + tig0043805:5979-5998 Msa1463970:CDS 35.0%
TGTGACAGATAAATGCAACA+AGG + tig0043805:6024-6043 Msa1463970:CDS 35.0%
CAAAATCAAGTTCTTCGGAA+AGG + tig0043805:6055-6074 Msa1463970:CDS 35.0%
GCTTCAGAAGATCATTATTG+CGG + tig0043805:6121-6140 Msa1463970:CDS 35.0%
TTGTAGAACCGGAGATAAAA+AGG + tig0043805:6159-6178 Msa1463970:CDS 35.0%
TGTAGAACCGGAGATAAAAA+GGG + tig0043805:6160-6179 Msa1463970:CDS 35.0%
! TTGGTTGATGCTGTTGAAAA+CGG + tig0043805:6199-6218 Msa1463970:CDS 35.0%
ACAAAGAGAAAGAATTGCTC+AGG + tig0043805:6283-6302 Msa1463970:CDS 35.0%
AGTCCACTAGAAATCATTAG+AGG - tig0043805:6406-6425 Msa1463970:intergenic 35.0%
GGACTACAAAATCCAAACAT+TGG + tig0043805:6421-6440 Msa1463970:CDS 35.0%
! CTTAAGTGTGTCATGTTTTC+AGG - tig0043805:6493-6512 Msa1463970:intergenic 35.0%
GAAAACATGACACACTTAAG+TGG + tig0043805:6493-6512 Msa1463970:CDS 35.0%
AAGTTATGATTCCTCCTTCA+TGG - tig0043805:6525-6544 Msa1463970:intergenic 35.0%
!! ATTATAGAAGCACCTGCTTT+AGG + tig0043805:6586-6605 Msa1463970:CDS 35.0%
ACTCGATATGAAAGACAGAA+TGG + tig0043805:6648-6667 Msa1463970:CDS 35.0%
! AACTGCTAACCTTTTTGCAT+TGG + tig0043805:6684-6703 Msa1463970:CDS 35.0%
TGTCTCTAACCAATGCAAAA+AGG - tig0043805:6696-6715 Msa1463970:intergenic 35.0%
!! TTTGCATTGGTTAGAGACAT+AGG + tig0043805:6697-6716 Msa1463970:CDS 35.0%
!!! TTTAAGAATTTTGGTTGCGG+CGG + tig0043805:6807-6826 Msa1463970:CDS 35.0%
AGGGATCAAAGAAGAAGAAT+TGG + tig0043805:6882-6901 Msa1463970:CDS 35.0%
GATCAAAGAAGAAGAATTGG+AGG + tig0043805:6885-6904 Msa1463970:CDS 35.0%
!! GTTTAGTTCTGCACATCAAA+TGG + tig0043805:6969-6988 Msa1463970:CDS 35.0%
TCAAATGGGAAGTTGTAGAA+TGG + tig0043805:6984-7003 Msa1463970:CDS 35.0%
CAAATGGGAAGTTGTAGAAT+GGG + tig0043805:6985-7004 Msa1463970:CDS 35.0%
TTGATGAGAATGGAGAAAGT+TGG + tig0043805:7031-7050 Msa1463970:CDS 35.0%
TGATGAGAATGGAGAAAGTT+GGG + tig0043805:7032-7051 Msa1463970:CDS 35.0%
GTAGATTGAATGGTTACCAT+AGG - tig0043805:7117-7136 Msa1463970:intergenic 35.0%
ACAGTATGCTGTAGATTGAA+TGG - tig0043805:7127-7146 Msa1463970:intergenic 35.0%
CTAAACACAAATTCCCATGT+TGG + tig0043805:7376-7395 Msa1463970:three_prime_UTR 35.0%
GATTCTCATCCTCTATTGAG+AGG + tig0043805:3815-3834 Msa1463970:CDS 40.0%
AACCTCTCAGATGCATGTAT+TGG + tig0043805:3877-3896 Msa1463970:CDS 40.0%
!! TGGAAAAAGGGTGTCACATA+TGG - tig0043805:3906-3925 Msa1463970:intergenic 40.0%
AAAGAACCTCATCAGGGAAT+GGG - tig0043805:4003-4022 Msa1463970:intergenic 40.0%
AAAAGAACCTCATCAGGGAA+TGG - tig0043805:4004-4023 Msa1463970:intergenic 40.0%
GGTGAAAAAGAACCTCATCA+GGG - tig0043805:4009-4028 Msa1463970:intergenic 40.0%
TGGTGAAAAAGAACCTCATC+AGG - tig0043805:4010-4029 Msa1463970:intergenic 40.0%
GTCAAAAATGTCGATGCTAC+AGG - tig0043805:4118-4137 Msa1463970:intergenic 40.0%
!!! GTAGCATCGACATTTTTGAC+AGG + tig0043805:4118-4137 Msa1463970:intron 40.0%
ACAGGTATTCAACACATGTG+TGG + tig0043805:4136-4155 Msa1463970:intron 40.0%
ATTCAACACATGTGTGGTGT+TGG + tig0043805:4142-4161 Msa1463970:intron 40.0%
AACTACAACTGCTATGCAGT+CGG + tig0043805:4349-4368 Msa1463970:intron 40.0%
ACTGATACAGACACTGACAA+TGG - tig0043805:4415-4434 Msa1463970:intergenic 40.0%
! TCGAAACACAGTTCCCATTT+TGG + tig0043805:5246-5265 Msa1463970:intron 40.0%
ACATCTGTCTGCAGCAATTA+GGG - tig0043805:5446-5465 Msa1463970:intergenic 40.0%
TACATCTGTCTGCAGCAATT+AGG - tig0043805:5447-5466 Msa1463970:intergenic 40.0%
TGGCTATAATCCAATGTGGA+AGG + tig0043805:5469-5488 Msa1463970:CDS 40.0%
AATCCAATGTGGAAGGCAAT+AGG + tig0043805:5476-5495 Msa1463970:CDS 40.0%
ATCCAATGTGGAAGGCAATA+GGG + tig0043805:5477-5496 Msa1463970:CDS 40.0%
TTGTCTCTATTAGTCCTTCC+TGG - tig0043805:5550-5569 Msa1463970:intergenic 40.0%
CTTCATCTTCAGTGACTTCA+AGG - tig0043805:5619-5638 Msa1463970:intergenic 40.0%
AAATGCGATGCTGTCATTGT+TGG + tig0043805:5659-5678 Msa1463970:CDS 40.0%
! AACGAGCTTTATGAATCAGG+TGG + tig0043805:5806-5825 Msa1463970:CDS 40.0%
! ATCATTTTACCGTCGAGAGT+TGG - tig0043805:5839-5858 Msa1463970:intergenic 40.0%
CGACGGTAAAATGATGATCT+TGG + tig0043805:5844-5863 Msa1463970:CDS 40.0%
GGTAAAATGATGATCTTGGC+TGG + tig0043805:5848-5867 Msa1463970:CDS 40.0%
!! TGGAGGTACTGCTATAAACT+GGG + tig0043805:5883-5902 Msa1463970:CDS 40.0%
AACACCTGACTCTGTTAAGA+AGG + tig0043805:5919-5938 Msa1463970:CDS 40.0%
CATTCCTTCTTAACAGAGTC+AGG - tig0043805:5926-5945 Msa1463970:intergenic 40.0%
CTGACTCTGTTAAGAAGGAA+TGG + tig0043805:5924-5943 Msa1463970:CDS 40.0%
CTATGGATTCAGTATGCAGA+AGG + tig0043805:5996-6015 Msa1463970:CDS 40.0%
GATTCAGTATGCAGAAGGAT+TGG + tig0043805:6001-6020 Msa1463970:CDS 40.0%
! GTCAGTACCCTTTTTATCTC+CGG - tig0043805:6170-6189 Msa1463970:intergenic 40.0%
!! AAAAGGGTACTGACTCAACT+TGG + tig0043805:6176-6195 Msa1463970:CDS 40.0%
CCACTAGAAATCATTAGAGG+AGG - tig0043805:6403-6422 Msa1463970:intergenic 40.0%
! CCTCCTCTAATGATTTCTAG+TGG + tig0043805:6400-6419 Msa1463970:CDS 40.0%
TGAAGGTTCCTTCCAATGTT+TGG - tig0043805:6436-6455 Msa1463970:intergenic 40.0%
ATTGAACTGGATGGAGATGA+AGG - tig0043805:6453-6472 Msa1463970:intergenic 40.0%
! TCCATCCAGTTCAATTTGCT+TGG + tig0043805:6458-6477 Msa1463970:CDS 40.0%
! CCATCCAGTTCAATTTGCTT+GGG + tig0043805:6459-6478 Msa1463970:CDS 40.0%
! CATCCAGTTCAATTTGCTTG+GGG + tig0043805:6460-6479 Msa1463970:CDS 40.0%
AGTGGTAATAACCATGAAGG+AGG + tig0043805:6511-6530 Msa1463970:CDS 40.0%
GTATTAGTTCCATGGATCTC+AGG + tig0043805:6625-6644 Msa1463970:CDS 40.0%
TTGGTTAGAGACATAGGATC+AGG + tig0043805:6703-6722 Msa1463970:CDS 40.0%
TCAGGAGAAGTAAGAAGTGA+AGG + tig0043805:6721-6740 Msa1463970:CDS 40.0%
!!! TTAAGAATTTTGGTTGCGGC+GGG + tig0043805:6808-6827 Msa1463970:CDS 40.0%
CTGTTGAGGTTGGAACTTAT+AGG + tig0043805:6833-6852 Msa1463970:CDS 40.0%
GTTGGAACTTATAGGAGTGA+TGG + tig0043805:6841-6860 Msa1463970:CDS 40.0%
GGAGTTTCTTGATACTGTCA+CGG + tig0043805:6906-6925 Msa1463970:CDS 40.0%
CATTGTCCAAAGTTCACTTC+TGG - tig0043805:6950-6969 Msa1463970:intergenic 40.0%
AATGGGTGAGAATGAAGAAG+AGG + tig0043805:7002-7021 Msa1463970:CDS 40.0%
ATGGGTGAGAATGAAGAAGA+GGG + tig0043805:7003-7022 Msa1463970:CDS 40.0%
GAGAAAGTTGGGAAGCAAAA+GGG + tig0043805:7043-7062 Msa1463970:CDS 40.0%
AAAGGGTTGTATGTGTGTGA+TGG + tig0043805:7060-7079 Msa1463970:CDS 40.0%
!! ACACTAGTTCTACCCAACAT+GGG - tig0043805:7392-7411 Msa1463970:intergenic 40.0%
!! AACACTAGTTCTACCCAACA+TGG - tig0043805:7393-7412 Msa1463970:intergenic 40.0%
TCTCATCCTCTATTGAGAGG+AGG + tig0043805:3818-3837 Msa1463970:CDS 45.0%
GGAGGTAGACGAAAAGAGAA+AGG + tig0043805:3836-3855 Msa1463970:CDS 45.0%
AGCCAATACATGCATCTGAG+AGG - tig0043805:3882-3901 Msa1463970:intergenic 45.0%
CATGTGTCAGTGTCATGTCT+CGG - tig0043805:4172-4191 Msa1463970:intergenic 45.0%
CGACACCGAAACATTGATAC+AGG - tig0043805:4235-4254 Msa1463970:intergenic 45.0%
AACTGAAACTGCTGTGCAGT+CGG + tig0043805:4486-4505 Msa1463970:intron 45.0%
AGATCATCATGCAAGAGCAG+AGG + tig0043805:4652-4671 Msa1463970:intron 45.0%
CATAGAATCCACCTCACCAA+TGG - tig0043805:4809-4828 Msa1463970:intergenic 45.0%
! CATTGGTGAGGTGGATTCTA+TGG + tig0043805:4807-4826 Msa1463970:CDS 45.0%
GTGGAACTCTTTGCTTGCAT+TGG + tig0043805:4864-4883 Msa1463970:CDS 45.0%
CTCTTTGCTTGCATTGGAAG+TGG + tig0043805:4870-4889 Msa1463970:CDS 45.0%
! CAAATGGATACCTCTAAGGG+CGG + tig0043805:4967-4986 Msa1463970:CDS 45.0%
TTGCTGCAGACAGATGTAGA+TGG + tig0043805:5449-5468 Msa1463970:intron 45.0%
TACCCTATTGCCTTCCACAT+TGG - tig0043805:5482-5501 Msa1463970:intergenic 45.0%
TCTATTAGTCCTTCCTGGAG+AGG - tig0043805:5545-5564 Msa1463970:intergenic 45.0%
ATCCAATCCCTGAGTGAGAA+AGG + tig0043805:5593-5612 Msa1463970:CDS 45.0%
TTCAAGGCCTTTCTCACTCA+GGG - tig0043805:5603-5622 Msa1463970:intergenic 45.0%
!! GATGCTGTCATTGTTGGTTC+CGG + tig0043805:5665-5684 Msa1463970:CDS 45.0%
GCTGCAATTCTTGCAAACTC+AGG + tig0043805:5707-5726 Msa1463970:CDS 45.0%
GTTCATCGCTGAACTTTCCA+AGG - tig0043805:5789-5808 Msa1463970:intergenic 45.0%
!! GTGGAGGTACTGCTATAAAC+TGG + tig0043805:5882-5901 Msa1463970:CDS 45.0%
! TATTGCGGTTCGTGCTGTTA+CGG + tig0043805:6136-6155 Msa1463970:CDS 45.0%
TGCTGTTACGGTTGTAGAAC+CGG + tig0043805:6148-6167 Msa1463970:CDS 45.0%
AATTGCTCAGGAGTGATAGC+TGG + tig0043805:6295-6314 Msa1463970:CDS 45.0%
GAGTGATAGCTGGAACAAGT+TGG + tig0043805:6305-6324 Msa1463970:CDS 45.0%
! TGATAGCTGGAACAAGTTGG+AGG + tig0043805:6308-6327 Msa1463970:CDS 45.0%
CCCAAGCAAATTGAACTGGA+TGG - tig0043805:6462-6481 Msa1463970:intergenic 45.0%
TAGCCCCAAGCAAATTGAAC+TGG - tig0043805:6466-6485 Msa1463970:intergenic 45.0%
AATGATCCAGGTCCTAAAGC+AGG - tig0043805:6601-6620 Msa1463970:intergenic 45.0%
ATATCGAGTCCTGAGATCCA+TGG - tig0043805:6637-6656 Msa1463970:intergenic 45.0%
CTTGATACTGTCACGGTTGT+CGG + tig0043805:6913-6932 Msa1463970:CDS 45.0%
GGAGAAAGTTGGGAAGCAAA+AGG + tig0043805:7042-7061 Msa1463970:CDS 45.0%
! AGTGTTTTGCCTAGTGCAGT+TGG + tig0043805:7084-7103 Msa1463970:CDS 45.0%
!! TGCAGTTGGTGTTAACCCTA+TGG + tig0043805:7098-7117 Msa1463970:CDS 45.0%
TGTGTCTGTTGGAACATGTG+TGG + tig0043805:7337-7356 Msa1463970:three_prime_UTR 45.0%
!! AAAAAAAATAGATTAAAAAA+TGG - tig0043805:4040-4059 Msa1463970:intergenic 5.0%
CGTCTACCTCCTCTCAATAG+AGG - tig0043805:3827-3846 Msa1463970:intergenic 50.0%
TCAGTTCCCATTCCCTGATG+AGG + tig0043805:3994-4013 Msa1463970:CDS 50.0%
AACTGCTATGCAGTCGGAGA+CGG + tig0043805:4355-4374 Msa1463970:intron 50.0%
AACACAAACACCGCCCTTAG+AGG - tig0043805:4980-4999 Msa1463970:intergenic 50.0%
GTGGAAGGCAATAGGGTACA+AGG + tig0043805:5484-5503 Msa1463970:CDS 50.0%
GAAGGCAATAGGGTACAAGG+TGG + tig0043805:5487-5506 Msa1463970:CDS 50.0%
CTTCAAGGCCTTTCTCACTC+AGG - tig0043805:5604-5623 Msa1463970:intergenic 50.0%
!! GTCATTGTTGGTTCCGGTAG+CGG + tig0043805:5671-5690 Msa1463970:CDS 50.0%
GGAATCATGCCAACTCTCGA+CGG + tig0043805:5827-5846 Msa1463970:CDS 50.0%
! ATCTTGGCTGGCTCAACAGT+CGG + tig0043805:5860-5879 Msa1463970:CDS 50.0%
! CGGAAAGGGTGTGAGAGAAT+TGG + tig0043805:6070-6089 Msa1463970:CDS 50.0%
!! GGGTACTGACTCAACTTGGT+TGG + tig0043805:6180-6199 Msa1463970:CDS 50.0%
TCTCAGCTCTACATCCAGTG+AGG - tig0043805:6234-6253 Msa1463970:intergenic 50.0%
CAAAGTTCACTTCTGGACCG+CGG - tig0043805:6943-6962 Msa1463970:intergenic 50.0%
!! GAGGGTGCAGTTGATGAGAA+TGG + tig0043805:7021-7040 Msa1463970:CDS 50.0%
GGGTTAACACCAACTGCACT+AGG - tig0043805:7096-7115 Msa1463970:intergenic 50.0%
TGAAACTGCTGTGCAGTCGG+AGG + tig0043805:4489-4508 Msa1463970:intron 55.0%
TGCACCAGAAGCAACGCCAT+TGG + tig0043805:4790-4809 Msa1463970:CDS 55.0%
CTCACCAATGGCGTTGCTTC+TGG - tig0043805:4797-4816 Msa1463970:intergenic 55.0%
CAGAAGCAACGCCATTGGTG+AGG + tig0043805:4795-4814 Msa1463970:CDS 55.0%
AAGCAACGCCATTGGTGAGG+TGG + tig0043805:4798-4817 Msa1463970:CDS 55.0%
TCCTGGAGAGGCCTCTTCTT+CGG - tig0043805:5533-5552 Msa1463970:intergenic 55.0%
AAGAAGAGGCCTCTCCAGGA+AGG + tig0043805:5533-5552 Msa1463970:CDS 55.0%
GGCCTTTCTCACTCAGGGAT+TGG - tig0043805:5598-5617 Msa1463970:intergenic 55.0%
!! ATTGTTGGTTCCGGTAGCGG+TGG + tig0043805:5674-5693 Msa1463970:CDS 55.0%
AACGGCGCAGTTATCCTCAC+TGG + tig0043805:6217-6236 Msa1463970:CDS 55.0%
!! GAAGCACCTGCTTTAGGACC+TGG + tig0043805:6592-6611 Msa1463970:CDS 55.0%
GATACTGTCACGGTTGTCGG+TGG + tig0043805:6916-6935 Msa1463970:CDS 55.0%
CGCGGTCCAGAAGTGAACTT+TGG + tig0043805:6941-6960 Msa1463970:CDS 55.0%
AGTCGGAGACGGCGTAGATG+TGG + tig0043805:4366-4385 Msa1463970:intron 60.0%
! GTCGGAGGCGTAGGGACAAT+TGG + tig0043805:4504-4523 Msa1463970:intron 60.0%
ACCGAAGAAGAGGCCTCTCC+AGG + tig0043805:5529-5548 Msa1463970:CDS 60.0%
TGCAACTCCTCCACCGCTAC+CGG - tig0043805:5687-5706 Msa1463970:intergenic 60.0%
! TTGGCTGGCTCAACAGTCGG+TGG + tig0043805:5863-5882 Msa1463970:CDS 60.0%
! TGCTGTGCAGTCGGAGGCGT+AGG + tig0043805:4495-4514 Msa1463970:intron 65.0%
! GCTGTGCAGTCGGAGGCGTA+GGG + tig0043805:4496-4515 Msa1463970:intron 65.0%
! GTTGGTTCCGGTAGCGGTGG+AGG + tig0043805:5677-5696 Msa1463970:CDS 65.0%
! GCTGGCTCAACAGTCGGTGG+AGG + tig0043805:5866-5885 Msa1463970:CDS 65.0%
TCACGGTTGTCGGTGGACCG+CGG + tig0043805:6923-6942 Msa1463970:CDS 65.0%
GGTTGCGGCGGGAGCTGTTG+AGG + tig0043805:6819-6838 Msa1463970:CDS 70.0%
GCGGCGGGAGCTGTTGAGGT+TGG + tig0043805:6823-6842 Msa1463970:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0043805 gene 3672 7441 3672 ID=Msa1463970;Name=Msa1463970
tig0043805 mRNA 3672 7441 3672 ID=Msa1463970-mRNA-1;Parent=Msa1463970;Name=Msa1463970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=137|1|1|1|1|1|3|256|737
tig0043805 exon 3672 4015 3672 ID=Msa1463970-mRNA-1:exon:24277;Parent=Msa1463970-mRNA-1
tig0043805 exon 4758 5036 4758 ID=Msa1463970-mRNA-1:exon:24278;Parent=Msa1463970-mRNA-1
tig0043805 exon 5458 7441 5458 ID=Msa1463970-mRNA-1:exon:24279;Parent=Msa1463970-mRNA-1
tig0043805 five_prime_UTR 3672 3808 3672 ID=Msa1463970-mRNA-1:five_prime_utr;Parent=Msa1463970-mRNA-1
tig0043805 CDS 3809 4015 3809 ID=Msa1463970-mRNA-1:cds;Parent=Msa1463970-mRNA-1
tig0043805 CDS 4758 5036 4758 ID=Msa1463970-mRNA-1:cds;Parent=Msa1463970-mRNA-1
tig0043805 CDS 5458 7185 5458 ID=Msa1463970-mRNA-1:cds;Parent=Msa1463970-mRNA-1
tig0043805 three_prime_UTR 7186 7441 7186 ID=Msa1463970-mRNA-1:three_prime_utr;Parent=Msa1463970-mRNA-1
Gene Sequence

>Msa1463970

ATGGAAGATTCTCATCCTCTATTGAGAGGAGGTAGACGAAAAGAGAAAGGTTATAGCCATGGATTTTTAACCTCTCAGATGCATGTATTGGCTTCCATATGTGACACCCTTTTTCCATCCATTCCATTAAACAAAGAAGTCTCTCAAGATGAAAACCTCTCATCCTTCTATACAACTTCTGGTTCTCAGTTCCCATTCCCTGATGAGGCTGCAGAGCTATTGTTGTTGTTCAAGAAGAGTGCACCAGAAGCAACGCCATTGGTGAGGTGGATTCTATGGATTCTGTCATTCAAATTAGGGACACTTTTTCTTTGTGGAACTCTTTGCTTGCATTGGAAGTGGCCTTTTGTTCTCAAATTCTCTGAGATTTCTTTGGAAAAGAGAGAAGAAATTTTCAAGAAATGGTCAAAAGAAAACAAATGGATACCTCTAAGGGCGGTGTTTGTGTTGATCAAAATTGTTTTCTTCTATACTTTGTTCTCGAGGACAGATGTAGATGGCTATAATCCAATGTGGAAGGCAATAGGGTACAAGGTGGACACTAGAGAAAAGTTGAAACCGAAGAAGAGGCCTCTCCAGGAAGGACTAATAGAGACAACATACGAAACCAATTCTACATTAATCCAATCCCTGAGTGAGAAAGGCCTTGAAGTCACTGAAGATGAAGAGCAGAACGTGTACAAGATCAAATGCGATGCTGTCATTGTTGGTTCCGGTAGCGGTGGAGGAGTTGCAGCTGCAATTCTTGCAAACTCAGGTCATAAAGTGATCATCCTAGAAAAAGGAGAGTATTTTGTTTCTCAAGATTATTCTTCCTTGGAAAGTTCAGCGATGAACGAGCTTTATGAATCAGGTGGAATCATGCCAACTCTCGACGGTAAAATGATGATCTTGGCTGGCTCAACAGTCGGTGGAGGTACTGCTATAAACTGGGCTGCTTGTGTTAGAACACCTGACTCTGTTAAGAAGGAATGGTCCGAAAAATATAAACTACCGCTTTTCACAAGCTCTGATTATCAATCTGCTATGGATTCAGTATGCAGAAGGATTGGTGTGACAGATAAATGCAACAAGGAAAGCTTTCAAAATCAAGTTCTTCGGAAAGGGTGTGAGAGAATTGGTTTAAAAGTCGAATCAGTTGCAGTGAATGCTTCAGAAGATCATTATTGCGGTTCGTGCTGTTACGGTTGTAGAACCGGAGATAAAAAGGGTACTGACTCAACTTGGTTGGTTGATGCTGTTGAAAACGGCGCAGTTATCCTCACTGGATGTAGAGCTGAGAAATTCATAATAGAAGATGGAAAGAATGGAACAAAGAGAAAGAATTGCTCAGGAGTGATAGCTGGAACAAGTTGGAGGAGTACGATTACAAAGAAACTCCAAATAGAATCCAAAGTAACTATTTCATCATGTGGATCACTACTTACACCTCCTCTAATGATTTCTAGTGGACTACAAAATCCAAACATTGGAAGGAACCTTCATCTCCATCCAGTTCAATTTGCTTGGGGCTATTTCCCTGAAAACATGACACACTTAAGTGGTAATAACCATGAAGGAGGAATCATAACTTCTATACACAAAGTACTTGCTGAGAACTCCACGCCAAAAATCATTATAGAAGCACCTGCTTTAGGACCTGGATCATTTTCAGTATTAGTTCCATGGATCTCAGGACTCGATATGAAAGACAGAATGGCGAAATATGCAAGAACTGCTAACCTTTTTGCATTGGTTAGAGACATAGGATCAGGAGAAGTAAGAAGTGAAGGAAGAATTTCTTATAGACTTGATCAAATGGACAGAGAAAATCTTAGAATTGGATTAAGGAAGTCTTTAAGAATTTTGGTTGCGGCGGGAGCTGTTGAGGTTGGAACTTATAGGAGTGATGGACAAAAAATCAAATGTGAAGGGATCAAAGAAGAAGAATTGGAGGAGTTTCTTGATACTGTCACGGTTGTCGGTGGACCGCGGTCCAGAAGTGAACTTTGGACAATGTTTAGTTCTGCACATCAAATGGGAAGTTGTAGAATGGGTGAGAATGAAGAAGAGGGTGCAGTTGATGAGAATGGAGAAAGTTGGGAAGCAAAAGGGTTGTATGTGTGTGATGGAAGTGTTTTGCCTAGTGCAGTTGGTGTTAACCCTATGGTAACCATTCAATCTACAGCATACTGTATTGCTAGTAAAATTGCAGAATCACTTAAGGAAGAATAG

Protein sequence

>Msa1463970

MEDSHPLLRGGRRKEKGYSHGFLTSQMHVLASICDTLFPSIPLNKEVSQDENLSSFYTTSGSQFPFPDEAAELLLLFKKSAPEATPLVRWILWILSFKLGTLFLCGTLCLHWKWPFVLKFSEISLEKREEIFKKWSKENKWIPLRAVFVLIKIVFFYTLFSRTDVDGYNPMWKAIGYKVDTREKLKPKKRPLQEGLIETTYETNSTLIQSLSEKGLEVTEDEEQNVYKIKCDAVIVGSGSGGGVAAAILANSGHKVIILEKGEYFVSQDYSSLESSAMNELYESGGIMPTLDGKMMILAGSTVGGGTAINWAACVRTPDSVKKEWSEKYKLPLFTSSDYQSAMDSVCRRIGVTDKCNKESFQNQVLRKGCERIGLKVESVAVNASEDHYCGSCCYGCRTGDKKGTDSTWLVDAVENGAVILTGCRAEKFIIEDGKNGTKRKNCSGVIAGTSWRSTITKKLQIESKVTISSCGSLLTPPLMISSGLQNPNIGRNLHLHPVQFAWGYFPENMTHLSGNNHEGGIITSIHKVLAENSTPKIIIEAPALGPGSFSVLVPWISGLDMKDRMAKYARTANLFALVRDIGSGEVRSEGRISYRLDQMDRENLRIGLRKSLRILVAAGAVEVGTYRSDGQKIKCEGIKEEELEEFLDTVTVVGGPRSRSELWTMFSSAHQMGSCRMGENEEEGAVDENGESWEAKGLYVCDGSVLPSAVGVNPMVTIQSTAYCIASKIAESLKEE*