AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127350 MtrunA17_Chr1g0191841 81.737 334 13 6 1 293 1 327 0.0 511
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127350 AT5G27560.3 54.627 335 94 7 14 293 10 341 6.60e-112 327
Msa0127350 AT5G27560.4 54.627 335 94 7 14 293 10 341 6.60e-112 327
Msa0127350 AT5G27560.1 54.627 335 94 7 14 293 10 341 6.60e-112 327
Msa0127350 AT5G27560.2 53.776 331 95 7 14 289 10 337 4.94e-108 317

Find 90 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1_3:-56592314 None:intergenic
CTCAAACTTGGCGCGAAGTT+TGG 0.262372 1_3:-56589918 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1_3:+56592531 Msa0127350:intron
GAAAATTGAGGATGGGAAAA+TGG 0.319876 1_3:-56589857 None:intergenic
TGCCATTTGGTGCAGTATTT+CGG 0.343945 1_3:+56591919 Msa0127350:CDS
AGAGTATTGTTGAGTGGAAC+TGG 0.347712 1_3:-56589820 None:intergenic
ATGTGATGATTCTTGATTGA+TGG 0.353162 1_3:+56592645 Msa0127350:exon
ACCTCAATATCTTCAGTATC+AGG 0.376552 1_3:-56592353 None:intergenic
ATTACTGCACCTTCCAAGTC+TGG 0.380610 1_3:-56590113 None:intergenic
ACCGCATCATTTGTATCTTC+AGG 0.381954 1_3:+56590152 Msa0127350:CDS
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1_3:-56590631 None:intergenic
ATCCACGGCCCTTCTTCGTC+GGG 0.393040 1_3:+56589738 Msa0127350:five_prime_UTR
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1_3:-56589930 None:intergenic
CCCCGACATCTTTGCTATAC+AGG 0.398941 1_3:-56591431 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1_3:-56592573 None:intergenic
GATATAATGTACGGCAGTTA+AGG 0.401996 1_3:+56591457 Msa0127350:CDS
GAGGATGATGAAGGAGGTTC+AGG 0.407540 1_3:-56589956 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1_3:+56590644 Msa0127350:CDS
ATGGGAAAATGGAGTGGGTG+AGG 0.425424 1_3:-56589846 None:intergenic
ATTCTTCCATTGGAAAATTG+AGG 0.430950 1_3:-56589869 None:intergenic
GCGTGGATTCCACATGATAA+GGG 0.432418 1_3:-56591409 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1_3:-56591410 None:intergenic
GCCTGTATAGCAAAGATGTC+GGG 0.439653 1_3:+56591430 Msa0127350:CDS
TATCCACGGCCCTTCTTCGT+CGG 0.446482 1_3:+56589737 Msa0127350:five_prime_UTR
TATTCTAACATCTGATGATC+AGG 0.447172 1_3:-56590975 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1_3:-56591402 None:intergenic
TGCAGTAATACAATCAAGTC+AGG 0.453229 1_3:+56590127 Msa0127350:CDS
GATATGTTCCGCTATATAGA+AGG 0.454960 1_3:+56592802 Msa0127350:three_prime_UTR
CACCGAAATACTGCACCAAA+TGG 0.466864 1_3:-56591921 None:intergenic
CATATGCGACCTATGCCATT+TGG 0.467305 1_3:+56591906 Msa0127350:CDS
CAGTTGTTTACCTCCAGACT+TGG 0.469645 1_3:+56590100 Msa0127350:intron
TAGCATACTTTAGAAATGAA+AGG 0.481792 1_3:+56592851 Msa0127350:three_prime_UTR
GGCGCGAAGTTTGGAGGTGG+AGG 0.483779 1_3:-56589909 None:intergenic
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1_3:-56589879 None:intergenic
GGATACATGCATCATAGTAT+AGG 0.485316 1_3:-56592751 None:intergenic
TGGGAAAATGGAGTGGGTGA+GGG 0.488701 1_3:-56589845 None:intergenic
TCCATTGGAAAATTGAGGAT+GGG 0.490691 1_3:-56589864 None:intergenic
AAACTTGGCGCGAAGTTTGG+AGG 0.491870 1_3:-56589915 None:intergenic
GTAAAGAGAAAATGAGTTGT+CGG 0.494768 1_3:+56589774 Msa0127350:exon
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1_3:-56589895 None:intergenic
TTCCATTGGAAAATTGAGGA+TGG 0.502142 1_3:-56589865 None:intergenic
CCACGGCCCTTCTTCGTCGG+GGG 0.512881 1_3:+56589740 Msa0127350:five_prime_UTR
GTTTCTAGTGAGGATGATGA+AGG 0.517280 1_3:-56589965 None:intergenic
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1_3:-56592345 None:intergenic
AGTATAGGATACAAGCTGTA+AGG 0.524513 1_3:-56592736 None:intergenic
CGCCTGTATAGCAAAGATGT+CGG 0.538948 1_3:+56591429 Msa0127350:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1_3:+56592352 Msa0127350:CDS
AGCACCGGCATCTGGAAATA+CGG 0.545922 1_3:-56590623 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1_3:-56589894 None:intergenic
GATCGAAAGCTTGTAGATAG+TGG 0.557895 1_3:+56590927 Msa0127350:CDS
TATAGCAAAGATGTCGGGGT+TGG 0.560922 1_3:+56591435 Msa0127350:CDS
CTTGGCGCGAAGTTTGGAGG+TGG 0.566902 1_3:-56589912 None:intergenic
ATCACATAGACTTCATGAAA+CGG 0.569010 1_3:-56592629 None:intergenic
AAGATAAAGACGAAACCGAC+AGG 0.570019 1_3:+56589999 Msa0127350:CDS
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1_3:+56592291 Msa0127350:CDS
AGGGAGAGAGTATTGTTGAG+TGG 0.578245 1_3:-56589826 None:intergenic
CACGGCCCTTCTTCGTCGGG+GGG 0.578613 1_3:+56589741 Msa0127350:five_prime_UTR
TCCACGGCCCTTCTTCGTCG+GGG 0.580662 1_3:+56589739 Msa0127350:five_prime_UTR
TAATGAATAATTATTATCCA+CGG 0.586409 1_3:+56589723 None:intergenic
AAGGAGGTTCAGGTTCACCT+TGG 0.587647 1_3:-56589946 None:intergenic
GCCAAGTTTGAGAAATTCCA+AGG 0.588934 1_3:+56589929 Msa0127350:CDS
TGTTTACCTCCAGACTTGGA+AGG 0.589318 1_3:+56590104 Msa0127350:CDS
TGTAGATAGTGGTGATGAGA+TGG 0.592499 1_3:+56590938 Msa0127350:CDS
TCGGGGTTGGATATAATGTA+CGG 0.596860 1_3:+56591448 Msa0127350:CDS
ACACAAATTTACATGAATCA+CGG 0.598919 1_3:-56592691 None:intergenic
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1_3:+56592588 Msa0127350:CDS
GCATCATTTGTATCTTCAGG+AGG 0.601953 1_3:+56590155 Msa0127350:CDS
TTGAGGATGGGAAAATGGAG+TGG 0.610141 1_3:-56589852 None:intergenic
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1_3:+56590647 Msa0127350:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1_3:-56591408 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1_3:+56590619 Msa0127350:CDS
TGAGGATGGGAAAATGGAGT+GGG 0.615442 1_3:-56589851 None:intergenic
AATACTGCACCAAATGGCAT+AGG 0.619316 1_3:-56591915 None:intergenic
GAGTATTGTTGAGTGGAACT+GGG 0.620429 1_3:-56589819 None:intergenic
ACTTGTGTCCTTCTATATAG+CGG 0.623101 1_3:-56592810 None:intergenic
ACATCTTTGCTATACAGGCG+TGG 0.625104 1_3:-56591426 None:intergenic
AGATAGTGGTGATGAGATGG+TGG 0.638397 1_3:+56590941 Msa0127350:CDS
TCCTGAAGATACAAATGATG+CGG 0.639331 1_3:-56590153 None:intergenic
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1_3:+56592584 Msa0127350:CDS
CATCATTTGTATCTTCAGGA+GGG 0.641311 1_3:+56590156 Msa0127350:CDS
TCTAGTGAGGATGATGAAGG+AGG 0.648033 1_3:-56589962 None:intergenic
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1_3:+56592561 Msa0127350:CDS
CCTGTATAGCAAAGATGTCG+GGG 0.661498 1_3:+56591431 Msa0127350:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1_3:-56592349 None:intergenic
AGCCAAGGCCCCTTATCATG+TGG 0.662906 1_3:+56591400 Msa0127350:intron
TGTAATGATAGTTTCTAGTG+AGG 0.671448 1_3:-56589975 None:intergenic
AAATGAAAGGAAACGTTCCG+TGG 0.678264 1_3:+56592864 Msa0127350:three_prime_UTR
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1_3:+56592286 Msa0127350:CDS
ACTGCACCTTCCAAGTCTGG+AGG 0.699886 1_3:-56590110 None:intergenic
AAGGGTGAGATTTCATACCA+CGG 0.736827 1_3:-56592881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATATAAATGACA+AGG + chr1_3:56591229-56591248 Msa0127350:intron 10.0%
!! AAAAAAAATATAAATGACAA+GGG + chr1_3:56591230-56591249 Msa0127350:intron 10.0%
!!! TACATTTTATTTTGAATAAT+TGG + chr1_3:56591816-56591835 Msa0127350:intron 10.0%
!! ATTTGTAATAAGAGATAATT+TGG + chr1_3:56590513-56590532 Msa0127350:intron 15.0%
!! ATGTATATAATAATCCTTAT+GGG - chr1_3:56591974-56591993 None:intergenic 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG - chr1_3:56592460-56592479 None:intergenic 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG - chr1_3:56592471-56592490 None:intergenic 15.0%
!! AGTGAAAGAAAAAGATATAT+TGG - chr1_3:56590208-56590227 None:intergenic 20.0%
!! TTAACAATCATCTTAATTAC+AGG + chr1_3:56590250-56590269 Msa0127350:intron 20.0%
!! CAATGCAAATTAAAATATAC+TGG - chr1_3:56590844-56590863 None:intergenic 20.0%
!!! TTTGTTATTTCTTCTCTTTT+CGG + chr1_3:56591661-56591680 Msa0127350:intron 20.0%
!! CATGTATATAATAATCCTTA+TGG - chr1_3:56591975-56591994 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG - chr1_3:56592247-56592266 None:intergenic 20.0%
!! TTATAAAGTAATATCTAGCA+AGG - chr1_3:56592399-56592418 None:intergenic 20.0%
!! AACGATATATACATAGAAAA+TGG - chr1_3:56592424-56592443 None:intergenic 20.0%
!! TATGTATATATCGTTATAGT+TGG + chr1_3:56592429-56592448 Msa0127350:intron 20.0%
!! ATGTATATATCGTTATAGTT+GGG + chr1_3:56592430-56592449 Msa0127350:intron 20.0%
! GAAAAAGATATATTGGAAGT+TGG - chr1_3:56590201-56590220 None:intergenic 25.0%
! GATGATTGTTAAAAATTGAG+TGG - chr1_3:56590242-56590261 None:intergenic 25.0%
! TATTCAAGAAACTAAATGTC+AGG + chr1_3:56590364-56590383 Msa0127350:intron 25.0%
!!! CCATTTTTAATATAAGAGCA+GGG - chr1_3:56590427-56590446 None:intergenic 25.0%
!!! TCCATTTTTAATATAAGAGC+AGG - chr1_3:56590428-56590447 None:intergenic 25.0%
! ACCCTACTGATAAAAAATTA+GGG + chr1_3:56590447-56590466 Msa0127350:intron 25.0%
!! ACATAAAGCATTAATCAATG+TGG - chr1_3:56590709-56590728 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG - chr1_3:56590781-56590800 None:intergenic 25.0%
! AACATGCACAATTATTTGTT+TGG + chr1_3:56590888-56590907 Msa0127350:intron 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG - chr1_3:56591214-56591233 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG + chr1_3:56591472-56591491 Msa0127350:CDS 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG - chr1_3:56591515-56591534 None:intergenic 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG - chr1_3:56591525-56591544 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG + chr1_3:56591523-56591542 Msa0127350:intron 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG + chr1_3:56591587-56591606 Msa0127350:intron 25.0%
!! TGTATGATTGTCTGAAATTT+AGG - chr1_3:56591635-56591654 None:intergenic 25.0%
! CTAGCAATATATAAATTCTG+AGG + chr1_3:56591731-56591750 Msa0127350:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG - chr1_3:56591857-56591876 None:intergenic 25.0%
! ATATAATAATCCTTATGGGA+GGG - chr1_3:56591970-56591989 None:intergenic 25.0%
! TATATAATAATCCTTATGGG+AGG - chr1_3:56591971-56591990 None:intergenic 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG - chr1_3:56592106-56592125 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG - chr1_3:56592107-56592126 None:intergenic 25.0%
! AAGTCAAAATCATTTACAGA+CGG - chr1_3:56592183-56592202 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG + chr1_3:56592250-56592269 Msa0127350:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG - chr1_3:56592317-56592336 None:intergenic 25.0%
! ACACAAATTTACATGAATCA+CGG - chr1_3:56592694-56592713 None:intergenic 25.0%
! TAATACATGCATCATAGTTT+AGG - chr1_3:56592775-56592794 None:intergenic 25.0%
!! TAGCATACTTTAGAAATGAA+AGG + chr1_3:56592851-56592870 Msa0127350:three_prime_UTR 25.0%
GTAAAGAGAAAATGAGTTGT+CGG + chr1_3:56589774-56589793 Msa0127350:exon 30.0%
ATTCTTCCATTGGAAAATTG+AGG - chr1_3:56589872-56589891 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG - chr1_3:56589978-56589997 None:intergenic 30.0%
GTAGTAATACTAATACCTGT+CGG - chr1_3:56590017-56590036 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG - chr1_3:56590236-56590255 None:intergenic 30.0%
AAACTAAATGTCAGGTTAGT+GGG + chr1_3:56590372-56590391 Msa0127350:intron 30.0%
CCCTGCTCTTATATTAAAAA+TGG + chr1_3:56590424-56590443 Msa0127350:intron 30.0%
GACCCTACTGATAAAAAATT+AGG + chr1_3:56590446-56590465 Msa0127350:intron 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG - chr1_3:56590451-56590470 None:intergenic 30.0%
CCCTACTGATAAAAAATTAG+GGG + chr1_3:56590448-56590467 Msa0127350:intron 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG - chr1_3:56590452-56590471 None:intergenic 30.0%
AGGGGTAATAAGAGATAATT+TGG + chr1_3:56590466-56590485 Msa0127350:intron 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG + chr1_3:56590674-56590693 Msa0127350:CDS 30.0%
! TAAAGCATTAATCAATGTGG+TGG - chr1_3:56590706-56590725 None:intergenic 30.0%
CATTTCACTAGAGAATTTGA+TGG + chr1_3:56590798-56590817 Msa0127350:intron 30.0%
TATTCTAACATCTGATGATC+AGG - chr1_3:56590978-56590997 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG - chr1_3:56591141-56591160 None:intergenic 30.0%
TATCAAAACACAAGAATGCA+TGG - chr1_3:56591345-56591364 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG + chr1_3:56591385-56591404 Msa0127350:intron 30.0%
AATGTTAACCAGGTACATAA+TGG + chr1_3:56591597-56591616 Msa0127350:intron 30.0%
AAATGATACCATTATGTACC+TGG - chr1_3:56591608-56591627 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG - chr1_3:56591969-56591988 None:intergenic 30.0%
ATGCAGACTATCTGAAAATT+AGG - chr1_3:56592018-56592037 None:intergenic 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG - chr1_3:56592118-56592137 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG + chr1_3:56592126-56592145 Msa0127350:intron 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG - chr1_3:56592130-56592149 None:intergenic 30.0%
ATCACATAGACTTCATGAAA+CGG - chr1_3:56592632-56592651 None:intergenic 30.0%
ATGTGATGATTCTTGATTGA+TGG + chr1_3:56592645-56592664 Msa0127350:exon 30.0%
GAAAATTGAGGATGGGAAAA+TGG - chr1_3:56589860-56589879 None:intergenic 35.0%
TCCATTGGAAAATTGAGGAT+GGG - chr1_3:56589867-56589886 None:intergenic 35.0%
TTCCATTGGAAAATTGAGGA+TGG - chr1_3:56589868-56589887 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG - chr1_3:56589933-56589952 None:intergenic 35.0%
TGCAGTAATACAATCAAGTC+AGG + chr1_3:56590127-56590146 Msa0127350:CDS 35.0%
TCCTGAAGATACAAATGATG+CGG - chr1_3:56590156-56590175 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG + chr1_3:56590156-56590175 Msa0127350:CDS 35.0%
TTGGAAGTTGGAACATACAA+TGG - chr1_3:56590189-56590208 None:intergenic 35.0%
!! TCGTCTAAAAATTCGAGTTG+AGG - chr1_3:56590290-56590309 None:intergenic 35.0%
!! CTCGAATTTTTAGACGATGA+AGG + chr1_3:56590293-56590312 Msa0127350:intron 35.0%
GAAACTAAATGTCAGGTTAG+TGG + chr1_3:56590371-56590390 Msa0127350:intron 35.0%
AACTAAATGTCAGGTTAGTG+GGG + chr1_3:56590373-56590392 Msa0127350:intron 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG + chr1_3:56590644-56590663 Msa0127350:CDS 35.0%
GAGCTCTGTTCTATCTTTAA+CGG + chr1_3:56591045-56591064 Msa0127350:intron 35.0%
GATATAATGTACGGCAGTTA+AGG + chr1_3:56591457-56591476 Msa0127350:CDS 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG - chr1_3:56591510-56591529 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG - chr1_3:56592011-56592030 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG - chr1_3:56592041-56592060 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG - chr1_3:56592071-56592090 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG + chr1_3:56592114-56592133 Msa0127350:intron 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG + chr1_3:56592264-56592283 Msa0127350:intron 35.0%
CAATATCTTCAGTATCAGGA+CGG - chr1_3:56592352-56592371 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG + chr1_3:56592352-56592371 Msa0127350:CDS 35.0%
ACCTCAATATCTTCAGTATC+AGG - chr1_3:56592356-56592375 None:intergenic 35.0%
!! AGCAAATTTGCTAGATCACT+TGG + chr1_3:56592493-56592512 Msa0127350:intron 35.0%
AAATAACATCTGCGCAACAT+AGG - chr1_3:56592532-56592551 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG + chr1_3:56592531-56592550 Msa0127350:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG + chr1_3:56592584-56592603 Msa0127350:CDS 35.0%
AGTATAGGATACAAGCTGTA+AGG - chr1_3:56592739-56592758 None:intergenic 35.0%
GGATACATGCATCATAGTAT+AGG - chr1_3:56592754-56592773 None:intergenic 35.0%
GATATGTTCCGCTATATAGA+AGG + chr1_3:56592802-56592821 Msa0127350:three_prime_UTR 35.0%
ACTTGTGTCCTTCTATATAG+CGG - chr1_3:56592813-56592832 None:intergenic 35.0%
! GAGTATTGTTGAGTGGAACT+GGG - chr1_3:56589822-56589841 None:intergenic 40.0%
!! AGAGTATTGTTGAGTGGAAC+TGG - chr1_3:56589823-56589842 None:intergenic 40.0%
! TCCCATCCTCAATTTTCCAA+TGG + chr1_3:56589863-56589882 Msa0127350:CDS 40.0%
GCCAAGTTTGAGAAATTCCA+AGG + chr1_3:56589929-56589948 Msa0127350:CDS 40.0%
!! GTTTCTAGTGAGGATGATGA+AGG - chr1_3:56589968-56589987 None:intergenic 40.0%
AAGATAAAGACGAAACCGAC+AGG + chr1_3:56589999-56590018 Msa0127350:CDS 40.0%
ACCGCATCATTTGTATCTTC+AGG + chr1_3:56590152-56590171 Msa0127350:CDS 40.0%
GCATCATTTGTATCTTCAGG+AGG + chr1_3:56590155-56590174 Msa0127350:CDS 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG + chr1_3:56590334-56590353 Msa0127350:intron 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG + chr1_3:56590647-56590666 Msa0127350:CDS 40.0%
TTACTCCGACAAAATAGCTG+CGG + chr1_3:56590742-56590761 Msa0127350:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG - chr1_3:56590919-56590938 None:intergenic 40.0%
GATCGAAAGCTTGTAGATAG+TGG + chr1_3:56590927-56590946 Msa0127350:CDS 40.0%
! TGTAGATAGTGGTGATGAGA+TGG + chr1_3:56590938-56590957 Msa0127350:CDS 40.0%
AACAGAGCTCAGAGATTTAC+TGG - chr1_3:56591035-56591054 None:intergenic 40.0%
ACAGCTATGTGACAACTTGA+TGG + chr1_3:56591110-56591129 Msa0127350:intron 40.0%
TCGGGGTTGGATATAATGTA+CGG + chr1_3:56591448-56591467 Msa0127350:CDS 40.0%
! CAAATGCACGTTTGTCGTTT+GGG + chr1_3:56591556-56591575 Msa0127350:intron 40.0%
AATACTGCACCAAATGGCAT+AGG - chr1_3:56591918-56591937 None:intergenic 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG + chr1_3:56591919-56591938 Msa0127350:CDS 40.0%
!! TTTCGGTGTTATCCAGAGTA+AGG + chr1_3:56591936-56591955 Msa0127350:intron 40.0%
TTTCAGATAGTCTGCATCCA+TGG + chr1_3:56592021-56592040 Msa0127350:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG + chr1_3:56592051-56592070 Msa0127350:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG - chr1_3:56592096-56592115 None:intergenic 40.0%
CCAACAATGTGCGAATTTCA+CGG - chr1_3:56592159-56592178 None:intergenic 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG + chr1_3:56592286-56592305 Msa0127350:CDS 40.0%
TGTTCAGTGATGACAAGGAT+AGG + chr1_3:56592291-56592310 Msa0127350:CDS 40.0%
AAATGAAAGGAAACGTTCCG+TGG + chr1_3:56592864-56592883 Msa0127350:three_prime_UTR 40.0%
AAGGGTGAGATTTCATACCA+CGG - chr1_3:56592884-56592903 Msa0127360:three_prime_UTR 40.0%
!! AGGGAGAGAGTATTGTTGAG+TGG - chr1_3:56589829-56589848 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG - chr1_3:56589854-56589873 None:intergenic 45.0%
TTGAGGATGGGAAAATGGAG+TGG - chr1_3:56589855-56589874 None:intergenic 45.0%
GCGAAGGGAAATTCTTCCAT+TGG - chr1_3:56589882-56589901 None:intergenic 45.0%
TCTAGTGAGGATGATGAAGG+AGG - chr1_3:56589965-56589984 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG + chr1_3:56590100-56590119 Msa0127350:intron 45.0%
TGTTTACCTCCAGACTTGGA+AGG + chr1_3:56590104-56590123 Msa0127350:CDS 45.0%
ATTACTGCACCTTCCAAGTC+TGG - chr1_3:56590116-56590135 None:intergenic 45.0%
AAAGCCGTATTTCCAGATGC+CGG + chr1_3:56590619-56590638 Msa0127350:CDS 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG - chr1_3:56590641-56590660 None:intergenic 45.0%
!! GTAGTCCGCAGCTATTTTGT+CGG - chr1_3:56590750-56590769 None:intergenic 45.0%
TGGACAGAATTGCATCAGCA+TGG - chr1_3:56590824-56590843 None:intergenic 45.0%
! AGATAGTGGTGATGAGATGG+TGG + chr1_3:56590941-56590960 Msa0127350:CDS 45.0%
CGTGGATTCCACATGATAAG+GGG - chr1_3:56591411-56591430 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG - chr1_3:56591412-56591431 None:intergenic 45.0%
! ACATCTTTGCTATACAGGCG+TGG - chr1_3:56591429-56591448 None:intergenic 45.0%
CGCCTGTATAGCAAAGATGT+CGG + chr1_3:56591429-56591448 Msa0127350:CDS 45.0%
GCCTGTATAGCAAAGATGTC+GGG + chr1_3:56591430-56591449 Msa0127350:CDS 45.0%
CCTGTATAGCAAAGATGTCG+GGG + chr1_3:56591431-56591450 Msa0127350:CDS 45.0%
TATAGCAAAGATGTCGGGGT+TGG + chr1_3:56591435-56591454 Msa0127350:CDS 45.0%
GCAAATGCACGTTTGTCGTT+TGG + chr1_3:56591555-56591574 Msa0127350:intron 45.0%
CATATGCGACCTATGCCATT+TGG + chr1_3:56591906-56591925 Msa0127350:CDS 45.0%
CACCGAAATACTGCACCAAA+TGG - chr1_3:56591924-56591943 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG - chr1_3:56591962-56591981 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG - chr1_3:56592097-56592116 None:intergenic 45.0%
CCGTGAAATTCGCACATTGT+TGG + chr1_3:56592156-56592175 Msa0127350:intron 45.0%
ATCTTCAGTATCAGGACGGT+TGG - chr1_3:56592348-56592367 None:intergenic 45.0%
GAAGAACAGAAACCAGAGCA+AGG + chr1_3:56592561-56592580 Msa0127350:CDS 45.0%
AACAGACTTTGTCCTTGCTC+TGG - chr1_3:56592576-56592595 None:intergenic 45.0%
TGGGAAAATGGAGTGGGTGA+GGG - chr1_3:56589848-56589867 None:intergenic 50.0%
ATGGGAAAATGGAGTGGGTG+AGG - chr1_3:56589849-56589868 None:intergenic 50.0%
AAACTTGGCGCGAAGTTTGG+AGG - chr1_3:56589918-56589937 None:intergenic 50.0%
CTCAAACTTGGCGCGAAGTT+TGG - chr1_3:56589921-56589940 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG - chr1_3:56589949-56589968 None:intergenic 50.0%
GAGGATGATGAAGGAGGTTC+AGG - chr1_3:56589959-56589978 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG + chr1_3:56590324-56590343 Msa0127350:intron 50.0%
CTGCGTCGTCCCAATCAAAT+TGG + chr1_3:56590398-56590417 Msa0127350:intron 50.0%
CGTCGTCCCAATCAAATTGG+AGG + chr1_3:56590401-56590420 Msa0127350:intron 50.0%
GCAGGGCCTCCAATTTGATT+GGG - chr1_3:56590410-56590429 None:intergenic 50.0%
AGCAGGGCCTCCAATTTGAT+TGG - chr1_3:56590411-56590430 None:intergenic 50.0%
!! AGCACCGGCATCTGGAAATA+CGG - chr1_3:56590626-56590645 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG - chr1_3:56591405-56591424 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG - chr1_3:56591413-56591432 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG - chr1_3:56591434-56591453 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG + chr1_3:56591560-56591579 Msa0127350:intron 50.0%
AGGGGAAAAAGGCCTTACTC+TGG - chr1_3:56591951-56591970 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG + chr1_3:56592588-56592607 Msa0127350:CDS 50.0%
TATCCACGGCCCTTCTTCGT+CGG + chr1_3:56589737-56589756 Msa0127350:five_prime_UTR 55.0%
TCTTACCCCCCGACGAAGAA+GGG - chr1_3:56589749-56589768 None:intergenic 55.0%
TTCTTACCCCCCGACGAAGA+AGG - chr1_3:56589750-56589769 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG - chr1_3:56589897-56589916 None:intergenic 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG - chr1_3:56589898-56589917 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG - chr1_3:56590113-56590132 None:intergenic 55.0%
! AGACGATGAAGGCGCACAGT+TGG + chr1_3:56590304-56590323 Msa0127350:intron 55.0%
AGCCAAGGCCCCTTATCATG+TGG + chr1_3:56591400-56591419 Msa0127350:intron 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG + chr1_3:56591957-56591976 Msa0127350:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG + chr1_3:56592602-56592621 Msa0127350:CDS 55.0%
ATCCACGGCCCTTCTTCGTC+GGG + chr1_3:56589738-56589757 Msa0127350:five_prime_UTR 60.0%
CTTGGCGCGAAGTTTGGAGG+TGG - chr1_3:56589915-56589934 None:intergenic 60.0%
AAGGCGCACAGTTGGAGCTC+TGG + chr1_3:56590312-56590331 Msa0127350:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG + chr1_3:56590313-56590332 Msa0127350:intron 60.0%
TCCACGGCCCTTCTTCGTCG+GGG + chr1_3:56589739-56589758 Msa0127350:five_prime_UTR 65.0%
GGCGCGAAGTTTGGAGGTGG+AGG - chr1_3:56589912-56589931 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG - chr1_3:56590634-56590653 None:intergenic 65.0%
CCACGGCCCTTCTTCGTCGG+GGG + chr1_3:56589740-56589759 Msa0127350:five_prime_UTR 70.0%
CACGGCCCTTCTTCGTCGGG+GGG + chr1_3:56589741-56589760 Msa0127350:five_prime_UTR 70.0%
CCCCCGACGAAGAAGGGCCG+TGG - chr1_3:56589743-56589762 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56589724 56592905 56589724 ID=Msa0127350;Name=Msa0127350
chr1_3 mRNA 56589724 56592905 56589724 ID=Msa0127350-mRNA-1;Parent=Msa0127350;Name=Msa0127350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=61|0.87|1|1|0.87|0.77|9|234|293
chr1_3 exon 56589724 56590020 56589724 ID=Msa0127350-mRNA-1:exon:17921;Parent=Msa0127350-mRNA-1
chr1_3 exon 56590103 56590190 56590103 ID=Msa0127350-mRNA-1:exon:17922;Parent=Msa0127350-mRNA-1
chr1_3 exon 56590613 56590695 56590613 ID=Msa0127350-mRNA-1:exon:17923;Parent=Msa0127350-mRNA-1
chr1_3 exon 56590920 56591034 56590920 ID=Msa0127350-mRNA-1:exon:17924;Parent=Msa0127350-mRNA-1
chr1_3 exon 56591402 56591493 56591402 ID=Msa0127350-mRNA-1:exon:17925;Parent=Msa0127350-mRNA-1
chr1_3 exon 56591887 56591952 56591887 ID=Msa0127350-mRNA-1:exon:17926;Parent=Msa0127350-mRNA-1
chr1_3 exon 56592280 56592373 56592280 ID=Msa0127350-mRNA-1:exon:17927;Parent=Msa0127350-mRNA-1
chr1_3 exon 56592543 56592767 56592543 ID=Msa0127350-mRNA-1:exon:17928;Parent=Msa0127350-mRNA-1
chr1_3 exon 56592789 56592905 56592789 ID=Msa0127350-mRNA-1:exon:17929;Parent=Msa0127350-mRNA-1
chr1_3 five_prime_UTR 56589724 56589784 56589724 ID=Msa0127350-mRNA-1:five_prime_utr;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56589785 56590020 56589785 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56590103 56590190 56590103 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56590613 56590695 56590613 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56590920 56591034 56590920 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56591402 56591493 56591402 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56591887 56591952 56591887 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56592280 56592373 56592280 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 CDS 56592543 56592650 56592543 ID=Msa0127350-mRNA-1:cds;Parent=Msa0127350-mRNA-1
chr1_3 three_prime_UTR 56592651 56592767 56592651 ID=Msa0127350-mRNA-1:three_prime_utr;Parent=Msa0127350-mRNA-1
chr1_3 three_prime_UTR 56592789 56592905 56592789 ID=Msa0127350-mRNA-1:three_prime_utr;Parent=Msa0127350-mRNA-1
Gene Sequence

>Msa0127350

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATGACCCAGTTCCACTCAACAATACTCTCTCCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCAAACTTCGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCATCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGCTTAAGTGATCGAAAGCTTGTAGATAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAGATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCTGATGATCCACCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGGGTTGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGCACTTTTACAACTGTCTATCATATGCGACCTATGCCATTTGGTGCAGTATTTCGGTGTTATCCAGAATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>Msa0127350

MSCRSLTCCNMTQFHSTILSPSPTPFSHPQFSNGRISLRSSTSTSKLRAKFEKFQGEPEPPSSSSLETIITQDKDETDSCLPPDLEGAVIQSSQATASFVSSGGMRAIKVKAVFPDAGAAALLKYRWKDALFSFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLSTFTTVYHMRPMPFGAVFRCYPELWKVFSDDKDRPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM*