AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390590 MtrunA17_Chr1g0194341 91.878 197 12 1 1 193 1 197 9.15e-122 344
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390590 AT4G01935.1 63.975 161 57 1 34 193 36 196 3.05e-68 209

Find 79 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATGCTTTACTTCATTA+AGG 0.194939 3_2:+1623325 None:intergenic
TGGACTAGAATTAATGTCTT+TGG 0.248033 3_2:+1622821 None:intergenic
TTGATAGGTTCCTCCCTTGC+TGG 0.255596 3_2:-1623815 Msa0390590:intron
CAAGCTAACATTGAAATCTT+TGG 0.287614 3_2:-1623207 Msa0390590:three_prime_UTR
ACCTAAACACATTATGCATT+TGG 0.289904 3_2:-1622798 Msa0390590:three_prime_UTR
TTCAGGTCTTACATTAATCT+TGG 0.295049 3_2:+1622769 None:intergenic
CTCGACGTTGTCTGCTATTC+CGG 0.310376 3_2:+1623460 None:intergenic
CTTTCAGGTTCCTTCACCTT+TGG 0.316840 3_2:-1623239 Msa0390590:three_prime_UTR
TCTCACAGTTTAAATTTGTT+TGG 0.329632 3_2:-1623296 Msa0390590:three_prime_UTR
TTCACCCTCTCATGCATTGT+TGG 0.330593 3_2:-1623374 Msa0390590:CDS
CCTAAACACATTATGCATTT+GGG 0.336010 3_2:-1622797 Msa0390590:three_prime_UTR
TCACCCTCTCATGCATTGTT+GGG 0.346406 3_2:-1623373 Msa0390590:CDS
TAAATTTGTTTGGCTATTGA+TGG 0.352569 3_2:-1623286 Msa0390590:three_prime_UTR
CCCAAATGCATAATGTGTTT+AGG 0.355683 3_2:+1622797 None:intergenic
ATGAAGCTGTAACGCTAGTT+TGG 0.368316 3_2:+1624209 None:intergenic
ATGCAATACCTTCTTTCATC+TGG 0.373692 3_2:-1624319 Msa0390590:CDS
AAACTAGCGTTACAGCTTCA+TGG 0.374325 3_2:-1624207 Msa0390590:CDS
GTAATGCTTTACTTCATTAA+GGG 0.376469 3_2:+1623326 None:intergenic
ACAACGAAGTAGAAAATGAT+TGG 0.378418 3_2:+1624372 None:intergenic
TTCGGCACAGGATTCGTGTT+TGG 0.393428 3_2:-1624163 Msa0390590:CDS
TGATAGGTTCCTCCCTTGCT+GGG 0.401780 3_2:-1623814 Msa0390590:intron
GCCCACTCCATACAAACATC+TGG 0.405704 3_2:-1624072 Msa0390590:CDS
AGGAACCTGAAAGAAGAAAA+AGG 0.412639 3_2:+1623249 None:intergenic
GGACAGAGTTAAACATAAAC+AGG 0.418315 3_2:-1624463 Msa0390590:five_prime_UTR
ATGTGTAGGGACTCGTTACT+TGG 0.434900 3_2:-1622962 Msa0390590:intron
ACTCCACACAGTACGCAAAC+GGG 0.436084 3_2:-1624269 Msa0390590:CDS
TTGCAGCAGCAGAGTTCCTA+TGG 0.440373 3_2:-1623424 Msa0390590:CDS
AACCTACCCAGATGTTTGTA+TGG 0.450973 3_2:+1624065 None:intergenic
AACTCCACACAGTACGCAAA+CGG 0.451385 3_2:-1624270 Msa0390590:CDS
TTGTTGAATGGAACATGGCC+AGG 0.462568 3_2:-1623398 Msa0390590:CDS
GTTTGGCTATTGATGGCAAC+TGG 0.465023 3_2:-1623279 Msa0390590:three_prime_UTR
TAACTCGATGCTCGCACAAA+AGG 0.467163 3_2:-1624348 Msa0390590:five_prime_UTR
CGTGTGTCACTTTCACTCTT+CGG 0.485963 3_2:-1624181 Msa0390590:CDS
TCACTTTCACTCTTCGGCAC+AGG 0.486315 3_2:-1624175 Msa0390590:CDS
TAACATTGAAATCTTTGGCC+AGG 0.494482 3_2:-1623202 Msa0390590:intron
AATGCATAATGTGTTTAGGT+TGG 0.496231 3_2:+1622801 None:intergenic
ATAAAATTGAATCAGCCTCA+TGG 0.501128 3_2:-1624435 Msa0390590:intron
TTCAACTCTACCTTGATGAG+AGG 0.524503 3_2:-1623765 Msa0390590:CDS
GTGTTTGGTCCACTTCTCGA+TGG 0.525210 3_2:-1624148 Msa0390590:CDS
TTATAAGCCTGAAAAGATGA+AGG 0.525798 3_2:+1624292 None:intergenic
ACCCAGATGTTTGTATGGAG+TGG 0.533363 3_2:+1624070 None:intergenic
TGTTTAAGACCCTCTCATCA+AGG 0.536972 3_2:+1623755 None:intergenic
ATGCATGAGAGGGTGAAGCC+TGG 0.537143 3_2:+1623380 None:intergenic
TCTTCTTAATTAATTTGTCA+CGG 0.543532 3_2:-1622911 Msa0390590:three_prime_UTR
CCCAGATGTTTGTATGGAGT+GGG 0.545906 3_2:+1624071 None:intergenic
GGCTCTGCTGATTGACAGCA+CGG 0.546704 3_2:+1624230 None:intergenic
GAACTCGTTTCGTACAAGTT+CGG 0.548080 3_2:-1624109 Msa0390590:CDS
AAGATTTCAATGTTAGCTTG+AGG 0.553858 3_2:+1623210 None:intergenic
CAAACCCAACAATGCATGAG+AGG 0.555759 3_2:+1623369 None:intergenic
TAAAACAACCCCAGCAAGGG+AGG 0.558692 3_2:+1623805 None:intergenic
GATAGGTTCCTCCCTTGCTG+GGG 0.563080 3_2:-1623813 Msa0390590:intron
AAGGGGAACCAGATGAAAGA+AGG 0.569485 3_2:+1624311 None:intergenic
CAGTAAAACAACCCCAGCAA+GGG 0.570370 3_2:+1623802 None:intergenic
GGTCTTAAACAAAGTTCAAG+AGG 0.574160 3_2:-1623743 Msa0390590:CDS
TATAAGCCTGAAAAGATGAA+GGG 0.580458 3_2:+1624293 None:intergenic
TGCTGCTGCAAATAATATGT+AGG 0.583565 3_2:+1623436 None:intergenic
CCCACTCCATACAAACATCT+GGG 0.584936 3_2:-1624071 Msa0390590:intron
AAACGAGTTCGACTCTCGAA+TGG 0.588877 3_2:+1624122 None:intergenic
TCAACTCTACCTTGATGAGA+GGG 0.596716 3_2:-1623764 Msa0390590:CDS
AGTGCTGAACTATACAAAGC+CGG 0.608175 3_2:-1623479 Msa0390590:CDS
GAGGATAGTACCAAAGGTGA+AGG 0.610524 3_2:+1623229 None:intergenic
GCAGTAAAACAACCCCAGCA+AGG 0.612534 3_2:+1623801 None:intergenic
AGTTTATGTCGCTCAAACAG+AGG 0.616371 3_2:-1622877 Msa0390590:three_prime_UTR
GAATGGAGTCCATCGAGAAG+TGG 0.618017 3_2:+1624139 None:intergenic
TAGCTTGAGGATAGTACCAA+AGG 0.624101 3_2:+1623223 None:intergenic
TGCTGATTGACAGCACGGTG+AGG 0.625751 3_2:+1624235 None:intergenic
AAGTTCGGAGCAATTGACAT+TGG 0.628907 3_2:-1624094 Msa0390590:CDS
ATTAAGGGTATCTCAGCTAG+TGG 0.632261 3_2:+1623341 None:intergenic
CTCCACACAGTACGCAAACG+GGG 0.633266 3_2:-1624268 Msa0390590:CDS
AAACCCAACAATGCATGAGA+GGG 0.633565 3_2:+1623370 None:intergenic
TAACTCTGTCCACATAGTAG+TGG 0.635726 3_2:+1624475 None:intergenic
ATAAGCCTGAAAAGATGAAG+GGG 0.636223 3_2:+1624294 None:intergenic
TCTTAATTAATTTGTCACGG+TGG 0.650683 3_2:-1622908 Msa0390590:three_prime_UTR
GTCTTAAACAAAGTTCAAGA+GGG 0.663204 3_2:-1623742 Msa0390590:CDS
GACCCCGTTTGCGTACTGTG+TGG 0.668600 3_2:+1624266 None:intergenic
TGTGTTGGACCACTACTATG+TGG 0.695704 3_2:-1624484 None:intergenic
CGGAATAGCAGACAACGTCG+AGG 0.727407 3_2:-1623459 Msa0390590:CDS
AGTGAGTACTTACATCAGGG+AGG 0.750946 3_2:+1623699 None:intergenic
AAGAGTGAAAGTGACACACG+AGG 0.759053 3_2:+1624184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTGATTATAAATTTAT+AGG - chr3_2:1623539-1623558 Msa0390590:intron 10.0%
!! GTATTTGATTATAAATTTAT+AGG - chr3_2:1623539-1623558 Msa0390590:intron 10.0%
!! TTATCTTATAAACTTGAAAT+TGG - chr3_2:1623517-1623536 Msa0390590:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr3_2:1623614-1623633 Msa0390590:intron 15.0%
!! TTATCTTATAAACTTGAAAT+TGG - chr3_2:1623517-1623536 Msa0390590:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr3_2:1623614-1623633 Msa0390590:intron 15.0%
!! ATACAAACGCATAAAATATA+TGG + chr3_2:1623190-1623209 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr3_2:1623613-1623632 Msa0390590:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr3_2:1623615-1623634 Msa0390590:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr3_2:1624061-1624080 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr3_2:1624246-1624265 Msa0390590:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr3_2:1624408-1624427 None:intergenic 20.0%
!! ATACAAACGCATAAAATATA+TGG + chr3_2:1623190-1623209 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr3_2:1623613-1623632 Msa0390590:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr3_2:1623615-1623634 Msa0390590:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr3_2:1624061-1624080 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr3_2:1624246-1624265 Msa0390590:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr3_2:1624408-1624427 None:intergenic 20.0%
! ATGAATTCTAATATTCCATG+AGG + chr3_2:1622740-1622759 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr3_2:1622780-1622799 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr3_2:1622781-1622800 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr3_2:1623235-1623254 Msa0390590:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr3_2:1623287-1623306 Msa0390590:three_prime_UTR 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr3_2:1623327-1623346 Msa0390590:exon 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr3_2:1623834-1623853 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr3_2:1623835-1623854 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr3_2:1623861-1623880 Msa0390590:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr3_2:1623871-1623890 Msa0390590:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr3_2:1623992-1624011 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG - chr3_2:1624181-1624200 Msa0390590:CDS 25.0%
! TGAATTCTATTCTATGTGTA+GGG - chr3_2:1624182-1624201 Msa0390590:CDS 25.0%
! ATGAATTCTAATATTCCATG+AGG + chr3_2:1622740-1622759 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr3_2:1622780-1622799 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr3_2:1622781-1622800 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr3_2:1623235-1623254 Msa0390590:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr3_2:1623287-1623306 Msa0390590:three_prime_UTR 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr3_2:1623327-1623346 Msa0390590:exon 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr3_2:1623834-1623853 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr3_2:1623835-1623854 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr3_2:1623861-1623880 Msa0390590:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr3_2:1623871-1623890 Msa0390590:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr3_2:1623992-1624011 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG - chr3_2:1624181-1624200 Msa0390590:CDS 25.0%
! TGAATTCTATTCTATGTGTA+GGG - chr3_2:1624182-1624201 Msa0390590:CDS 25.0%
ATAAAATTGAATCAGCCTCA+TGG - chr3_2:1622722-1622741 Msa0390590:three_prime_UTR 30.0%
ACAACGAAGTAGAAAATGAT+TGG + chr3_2:1622788-1622807 None:intergenic 30.0%
TATAAGCCTGAAAAGATGAA+GGG + chr3_2:1622867-1622886 None:intergenic 30.0%
TTATAAGCCTGAAAAGATGA+AGG + chr3_2:1622868-1622887 None:intergenic 30.0%
TACCACTCTAAATCATTCAT+TGG - chr3_2:1623140-1623159 Msa0390590:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr3_2:1623334-1623353 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr3_2:1623415-1623434 Msa0390590:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr3_2:1623605-1623624 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr3_2:1623747-1623766 Msa0390590:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr3_2:1623752-1623771 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr3_2:1623950-1623969 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr3_2:1623950-1623969 Msa0390590:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr3_2:1624128-1624147 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr3_2:1624131-1624150 Msa0390590:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr3_2:1624249-1624268 Msa0390590:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr3_2:1624339-1624358 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr3_2:1624359-1624378 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr3_2:1624359-1624378 Msa0390590:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr3_2:1624360-1624379 Msa0390590:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr3_2:1624391-1624410 None:intergenic 30.0%
ATAAAATTGAATCAGCCTCA+TGG - chr3_2:1622722-1622741 Msa0390590:three_prime_UTR 30.0%
ACAACGAAGTAGAAAATGAT+TGG + chr3_2:1622788-1622807 None:intergenic 30.0%
TATAAGCCTGAAAAGATGAA+GGG + chr3_2:1622867-1622886 None:intergenic 30.0%
TTATAAGCCTGAAAAGATGA+AGG + chr3_2:1622868-1622887 None:intergenic 30.0%
TACCACTCTAAATCATTCAT+TGG - chr3_2:1623140-1623159 Msa0390590:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr3_2:1623334-1623353 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr3_2:1623415-1623434 Msa0390590:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr3_2:1623605-1623624 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr3_2:1623747-1623766 Msa0390590:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr3_2:1623752-1623771 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr3_2:1623950-1623969 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr3_2:1623950-1623969 Msa0390590:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr3_2:1624128-1624147 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr3_2:1624131-1624150 Msa0390590:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr3_2:1624249-1624268 Msa0390590:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr3_2:1624339-1624358 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr3_2:1624359-1624378 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr3_2:1624359-1624378 Msa0390590:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr3_2:1624360-1624379 Msa0390590:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr3_2:1624391-1624410 None:intergenic 30.0%
GGACAGAGTTAAACATAAAC+AGG - chr3_2:1622694-1622713 Msa0390590:three_prime_UTR 35.0%
ATGCAATACCTTCTTTCATC+TGG - chr3_2:1622838-1622857 Msa0390590:three_prime_UTR 35.0%
ATAAGCCTGAAAAGATGAAG+GGG + chr3_2:1622866-1622885 None:intergenic 35.0%
GACCAATGAATGATTTAGAG+TGG + chr3_2:1623145-1623164 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr3_2:1623279-1623298 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr3_2:1623280-1623299 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr3_2:1623293-1623312 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr3_2:1623414-1623433 Msa0390590:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr3_2:1623724-1623743 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr3_2:1623754-1623773 Msa0390590:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr3_2:1623911-1623930 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr3_2:1623955-1623974 Msa0390590:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr3_2:1624046-1624065 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr3_2:1624363-1624382 None:intergenic 35.0%
GGACAGAGTTAAACATAAAC+AGG - chr3_2:1622694-1622713 Msa0390590:three_prime_UTR 35.0%
ATGCAATACCTTCTTTCATC+TGG - chr3_2:1622838-1622857 Msa0390590:three_prime_UTR 35.0%
ATAAGCCTGAAAAGATGAAG+GGG + chr3_2:1622866-1622885 None:intergenic 35.0%
GACCAATGAATGATTTAGAG+TGG + chr3_2:1623145-1623164 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr3_2:1623279-1623298 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr3_2:1623280-1623299 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr3_2:1623293-1623312 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr3_2:1623414-1623433 Msa0390590:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr3_2:1623724-1623743 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr3_2:1623754-1623773 Msa0390590:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr3_2:1623911-1623930 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr3_2:1623955-1623974 Msa0390590:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr3_2:1624046-1624065 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr3_2:1624363-1624382 None:intergenic 35.0%
TAACTCTGTCCACATAGTAG+TGG + chr3_2:1622685-1622704 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr3_2:1622951-1622970 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr3_2:1622950-1622969 Msa0390590:three_prime_UTR 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr3_2:1623048-1623067 Msa0390590:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr3_2:1623063-1623082 Msa0390590:intron 40.0%
AACCTACCCAGATGTTTGTA+TGG + chr3_2:1623095-1623114 None:intergenic 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr3_2:1623198-1623217 Msa0390590:intron 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr3_2:1623212-1623231 Msa0390590:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr3_2:1623392-1623411 Msa0390590:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr3_2:1623393-1623412 Msa0390590:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr3_2:1623405-1623424 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr3_2:1623464-1623483 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr3_2:1623465-1623484 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr3_2:1623678-1623697 Msa0390590:intron 40.0%
AAACCCAACAATGCATGAGA+GGG + chr3_2:1623790-1623809 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr3_2:1623819-1623838 None:intergenic 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG + chr3_2:1623906-1623925 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG - chr3_2:1623903-1623922 Msa0390590:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr3_2:1623937-1623956 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr3_2:1623976-1623995 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr3_2:1624280-1624299 Msa0390590:CDS 40.0%
TAACTCTGTCCACATAGTAG+TGG + chr3_2:1622685-1622704 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr3_2:1622951-1622970 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr3_2:1622950-1622969 Msa0390590:three_prime_UTR 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr3_2:1623048-1623067 Msa0390590:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr3_2:1623063-1623082 Msa0390590:intron 40.0%
AACCTACCCAGATGTTTGTA+TGG + chr3_2:1623095-1623114 None:intergenic 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr3_2:1623198-1623217 Msa0390590:intron 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr3_2:1623212-1623231 Msa0390590:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr3_2:1623392-1623411 Msa0390590:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr3_2:1623393-1623412 Msa0390590:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr3_2:1623405-1623424 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr3_2:1623464-1623483 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr3_2:1623465-1623484 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr3_2:1623678-1623697 Msa0390590:intron 40.0%
AAACCCAACAATGCATGAGA+GGG + chr3_2:1623790-1623809 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr3_2:1623819-1623838 None:intergenic 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG + chr3_2:1623906-1623925 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG - chr3_2:1623903-1623922 Msa0390590:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr3_2:1623937-1623956 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr3_2:1623976-1623995 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr3_2:1624280-1624299 Msa0390590:CDS 40.0%
TAACTCGATGCTCGCACAAA+AGG - chr3_2:1622809-1622828 Msa0390590:three_prime_UTR 45.0%
AAGGGGAACCAGATGAAAGA+AGG + chr3_2:1622849-1622868 None:intergenic 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr3_2:1622858-1622877 Msa0390590:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr3_2:1622887-1622906 Msa0390590:three_prime_UTR 45.0%
AAGAGTGAAAGTGACACACG+AGG + chr3_2:1622976-1622995 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG - chr3_2:1622976-1622995 Msa0390590:intron 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr3_2:1623038-1623057 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr3_2:1623089-1623108 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr3_2:1623086-1623105 Msa0390590:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr3_2:1623090-1623109 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr3_2:1623090-1623109 Msa0390590:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr3_2:1623199-1623218 Msa0390590:intron 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr3_2:1623244-1623263 Msa0390590:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr3_2:1623358-1623377 None:intergenic 45.0%
!! GGGTTGTTTTACTGCTCGAT+TGG - chr3_2:1623364-1623383 Msa0390590:CDS 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr3_2:1623461-1623480 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr3_2:1623759-1623778 Msa0390590:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr3_2:1623783-1623802 Msa0390590:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr3_2:1623784-1623803 Msa0390590:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG + chr3_2:1623791-1623810 None:intergenic 45.0%
! GTTTGGCTATTGATGGCAAC+TGG - chr3_2:1623878-1623897 Msa0390590:intron 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr3_2:1623918-1623937 Msa0390590:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr3_2:1623931-1623950 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG - chr3_2:1624195-1624214 Msa0390590:CDS 45.0%
TAACTCGATGCTCGCACAAA+AGG - chr3_2:1622809-1622828 Msa0390590:three_prime_UTR 45.0%
AAGGGGAACCAGATGAAAGA+AGG + chr3_2:1622849-1622868 None:intergenic 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr3_2:1622858-1622877 Msa0390590:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr3_2:1622887-1622906 Msa0390590:three_prime_UTR 45.0%
AAGAGTGAAAGTGACACACG+AGG + chr3_2:1622976-1622995 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG - chr3_2:1622976-1622995 Msa0390590:intron 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr3_2:1623038-1623057 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr3_2:1623089-1623108 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr3_2:1623086-1623105 Msa0390590:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr3_2:1623090-1623109 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr3_2:1623090-1623109 Msa0390590:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr3_2:1623199-1623218 Msa0390590:intron 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr3_2:1623244-1623263 Msa0390590:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr3_2:1623358-1623377 None:intergenic 45.0%
!! GGGTTGTTTTACTGCTCGAT+TGG - chr3_2:1623364-1623383 Msa0390590:CDS 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr3_2:1623461-1623480 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr3_2:1623759-1623778 Msa0390590:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr3_2:1623783-1623802 Msa0390590:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr3_2:1623784-1623803 Msa0390590:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG + chr3_2:1623791-1623810 None:intergenic 45.0%
! GTTTGGCTATTGATGGCAAC+TGG - chr3_2:1623878-1623897 Msa0390590:intron 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr3_2:1623918-1623937 Msa0390590:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr3_2:1623931-1623950 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG - chr3_2:1624195-1624214 Msa0390590:CDS 45.0%
ACTCCACACAGTACGCAAAC+GGG - chr3_2:1622888-1622907 Msa0390590:three_prime_UTR 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr3_2:1622982-1623001 Msa0390590:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr3_2:1622994-1623013 Msa0390590:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr3_2:1623009-1623028 Msa0390590:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr3_2:1623021-1623040 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr3_2:1623085-1623104 Msa0390590:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr3_2:1623342-1623361 Msa0390590:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr3_2:1623343-1623362 Msa0390590:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr3_2:1623355-1623374 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr3_2:1623359-1623378 None:intergenic 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr3_2:1623700-1623719 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr3_2:1623733-1623752 Msa0390590:CDS 50.0%
CTCTGTCCACATAGTAGTGG+TGG + chr3_2:1622682-1622701 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG - chr3_2:1622888-1622907 Msa0390590:three_prime_UTR 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr3_2:1622982-1623001 Msa0390590:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr3_2:1622994-1623013 Msa0390590:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr3_2:1623009-1623028 Msa0390590:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr3_2:1623021-1623040 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr3_2:1623085-1623104 Msa0390590:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr3_2:1623342-1623361 Msa0390590:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr3_2:1623343-1623362 Msa0390590:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr3_2:1623355-1623374 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr3_2:1623359-1623378 None:intergenic 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr3_2:1623700-1623719 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr3_2:1623733-1623752 Msa0390590:CDS 50.0%
CTCCACACAGTACGCAAACG+GGG - chr3_2:1622889-1622908 Msa0390590:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr3_2:1622925-1622944 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr3_2:1622930-1622949 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr3_2:1623344-1623363 Msa0390590:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr3_2:1623698-1623717 Msa0390590:intron 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr3_2:1623780-1623799 None:intergenic 55.0%
CTCCACACAGTACGCAAACG+GGG - chr3_2:1622889-1622908 Msa0390590:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr3_2:1622925-1622944 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr3_2:1622930-1622949 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr3_2:1623344-1623363 Msa0390590:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr3_2:1623698-1623717 Msa0390590:intron 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr3_2:1623780-1623799 None:intergenic 55.0%
GACCCCGTTTGCGTACTGTG+TGG + chr3_2:1622894-1622913 None:intergenic 60.0%
GACCCCGTTTGCGTACTGTG+TGG + chr3_2:1622894-1622913 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 1622681 1624498 1622681 ID=Msa0390590;Name=Msa0390590
chr3_2 mRNA 1622681 1624498 1622681 ID=Msa0390590-mRNA-1;Parent=Msa0390590;Name=Msa0390590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=128|1|1|1|0.5|0.2|5|427|193
chr3_2 exon 1622681 1622976 1622681 ID=Msa0390590-mRNA-1:exon:469;Parent=Msa0390590-mRNA-1
chr3_2 exon 1623203 1623526 1623203 ID=Msa0390590-mRNA-1:exon:468;Parent=Msa0390590-mRNA-1
chr3_2 exon 1623712 1623830 1623712 ID=Msa0390590-mRNA-1:exon:467;Parent=Msa0390590-mRNA-1
chr3_2 exon 1624072 1624407 1624072 ID=Msa0390590-mRNA-1:exon:466;Parent=Msa0390590-mRNA-1
chr3_2 exon 1624437 1624498 1624437 ID=Msa0390590-mRNA-1:exon:465;Parent=Msa0390590-mRNA-1
chr3_2 five_prime_UTR 1624437 1624498 1624437 ID=Msa0390590-mRNA-1:five_prime_utr;Parent=Msa0390590-mRNA-1
chr3_2 five_prime_UTR 1624342 1624407 1624342 ID=Msa0390590-mRNA-1:five_prime_utr;Parent=Msa0390590-mRNA-1
chr3_2 CDS 1624072 1624341 1624072 ID=Msa0390590-mRNA-1:cds;Parent=Msa0390590-mRNA-1
chr3_2 CDS 1623712 1623830 1623712 ID=Msa0390590-mRNA-1:cds;Parent=Msa0390590-mRNA-1
chr3_2 CDS 1623334 1623526 1623334 ID=Msa0390590-mRNA-1:cds;Parent=Msa0390590-mRNA-1
chr3_2 three_prime_UTR 1623203 1623333 1623203 ID=Msa0390590-mRNA-1:three_prime_utr;Parent=Msa0390590-mRNA-1
chr3_2 three_prime_UTR 1622681 1622976 1622681 ID=Msa0390590-mRNA-1:three_prime_utr;Parent=Msa0390590-mRNA-1
Gene Sequence

>Msa0390590

ATGCAATACCTTCTTTCATCTGGTTCCCCTTCATCTTTTCAGGCTTATAAACTCCACACAGTACGCAAACGGGGTCTGCTTAAGCCTCACCGTGCTGTCAATCAGCAGAGCCAAACTAGCGTTACAGCTTCATGGCCTCGTGTGTCACTTTCACTCTTCGGCACAGGATTCGTGTTTGGTCCACTTCTCGATGGACTCCATTCGAGAGTCGAACTCGTTTCGTACAAGTTCGGAGCAATTGACATTGGCCCACTCCATACAAACATCTGGGTTCCTCCCTTGCTGGGGTTGTTTTACTGCTCGATTGGTTTGCTTCAACTCTACCTTGATGAGAGGGTCTTAAACAAAGTTCAAGAGGGAAGTTTAACAAAAACAATATCCTCCCTGATATTAGTAGCGTTGTTCATAGAGTTGAGTGCTGAACTATACAAAGCCGGAATAGCAGACAACGTCGAGGCCTACATATTATTTGCAGCAGCAGAGTTCCTATGGTTTTTGTTGAATGGAACATGGCCAGGCTTCACCCTCTCATGCATTGTTGGGTTTGCTTGTCCACTAGCTGAGATACCCTTAATGAAGTAA

Protein sequence

>Msa0390590

MQYLLSSGSPSSFQAYKLHTVRKRGLLKPHRAVNQQSQTSVTASWPRVSLSLFGTGFVFGPLLDGLHSRVELVSYKFGAIDIGPLHTNIWVPPLLGLFYCSIGLLQLYLDERVLNKVQEGSLTKTISSLILVALFIELSAELYKAGIADNVEAYILFAAAEFLWFLLNGTWPGFTLSCIVGFACPLAEIPLMK*