AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127910 MtrunA17_Chr1g0194341 91.878 197 12 1 1 193 1 197 9.15e-122 344
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127910 AT4G01935.1 63.975 161 57 1 34 193 36 196 3.05e-68 209

Find 79 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATGCTTTACTTCATTA+AGG 0.194939 1_3:+57548031 None:intergenic
TGGACTAGAATTAATGTCTT+TGG 0.248033 1_3:+57547527 None:intergenic
TTGATAGGTTCCTCCCTTGC+TGG 0.255596 1_3:-57548521 Msa0127910:intron
CAAGCTAACATTGAAATCTT+TGG 0.287614 1_3:-57547913 Msa0127910:three_prime_UTR
ACCTAAACACATTATGCATT+TGG 0.289904 1_3:-57547504 Msa0127910:three_prime_UTR
TTCAGGTCTTACATTAATCT+TGG 0.295049 1_3:+57547475 None:intergenic
CTCGACGTTGTCTGCTATTC+CGG 0.310376 1_3:+57548166 None:intergenic
CTTTCAGGTTCCTTCACCTT+TGG 0.316840 1_3:-57547945 Msa0127910:three_prime_UTR
TCTCACAGTTTAAATTTGTT+TGG 0.329632 1_3:-57548002 Msa0127910:three_prime_UTR
TTCACCCTCTCATGCATTGT+TGG 0.330593 1_3:-57548080 Msa0127910:CDS
CCTAAACACATTATGCATTT+GGG 0.336010 1_3:-57547503 Msa0127910:three_prime_UTR
TCACCCTCTCATGCATTGTT+GGG 0.346406 1_3:-57548079 Msa0127910:CDS
TAAATTTGTTTGGCTATTGA+TGG 0.352569 1_3:-57547992 Msa0127910:three_prime_UTR
CCCAAATGCATAATGTGTTT+AGG 0.355683 1_3:+57547503 None:intergenic
ATGAAGCTGTAACGCTAGTT+TGG 0.368316 1_3:+57548920 None:intergenic
ATGCAATACCTTCTTTCATC+TGG 0.373692 1_3:-57549030 Msa0127910:CDS
AAACTAGCGTTACAGCTTCA+TGG 0.374325 1_3:-57548918 Msa0127910:CDS
GTAATGCTTTACTTCATTAA+GGG 0.376469 1_3:+57548032 None:intergenic
ACAACGAAGTAGAAAATGAT+TGG 0.378418 1_3:+57549083 None:intergenic
TTCGGCACAGGATTCGTGTT+TGG 0.393428 1_3:-57548874 Msa0127910:CDS
TGATAGGTTCCTCCCTTGCT+GGG 0.401780 1_3:-57548520 Msa0127910:intron
GCCCACTCCATACAAACATC+TGG 0.405704 1_3:-57548783 Msa0127910:CDS
AGGAACCTGAAAGAAGAAAA+AGG 0.412639 1_3:+57547955 None:intergenic
GGACAGAGTTAAACATAAAC+AGG 0.418315 1_3:-57549174 Msa0127910:five_prime_UTR
ATGTGTAGGGACTCGTTACT+TGG 0.434900 1_3:-57547668 Msa0127910:intron
ACTCCACACAGTACGCAAAC+GGG 0.436084 1_3:-57548980 Msa0127910:CDS
TTGCAGCAGCAGAGTTCCTA+TGG 0.440373 1_3:-57548130 Msa0127910:CDS
AACTCCACACAGTACGCAAA+CGG 0.451385 1_3:-57548981 Msa0127910:CDS
TTGTTGAATGGAACATGGCC+AGG 0.462568 1_3:-57548104 Msa0127910:CDS
GTTTGGCTATTGATGGCAAC+TGG 0.465023 1_3:-57547985 Msa0127910:three_prime_UTR
TAACTCGATGCTCGCACAAA+AGG 0.467163 1_3:-57549059 Msa0127910:five_prime_UTR
ATCCTACCCAGATGTTTGTA+TGG 0.475836 1_3:+57548776 None:intergenic
CGTGTGTCACTTTCACTCTT+CGG 0.485963 1_3:-57548892 Msa0127910:CDS
ACCCAGATGTTTGTATGGAG+TGG 0.485990 1_3:+57548781 None:intergenic
TCACTTTCACTCTTCGGCAC+AGG 0.486315 1_3:-57548886 Msa0127910:CDS
TAACATTGAAATCTTTGGCC+AGG 0.494482 1_3:-57547908 Msa0127910:intron
AATGCATAATGTGTTTAGGT+TGG 0.496231 1_3:+57547507 None:intergenic
ATAAAATTGAATCAACCTCA+TGG 0.514292 1_3:-57549146 Msa0127910:intron
TTCAACTCTACCTTGATGAG+AGG 0.524503 1_3:-57548471 Msa0127910:CDS
GTGTTTGGTCCACTTCTCGA+TGG 0.525210 1_3:-57548859 Msa0127910:CDS
TTATAAGCCTGAAAAGATGA+AGG 0.525798 1_3:+57549003 None:intergenic
TGTTTAAGACCCTCTCATCA+AGG 0.536972 1_3:+57548461 None:intergenic
ATGCATGAGAGGGTGAAGCC+TGG 0.537143 1_3:+57548086 None:intergenic
TCTTCTTAATTAATTTGTCA+CGG 0.543532 1_3:-57547617 Msa0127910:three_prime_UTR
CCCAGATGTTTGTATGGAGT+GGG 0.545906 1_3:+57548782 None:intergenic
GGCTCTGCTGATTGACAGCA+CGG 0.546704 1_3:+57548941 None:intergenic
GAACTCGTTTCGTACAAGTT+CGG 0.548080 1_3:-57548820 Msa0127910:CDS
AAGATTTCAATGTTAGCTTG+AGG 0.553858 1_3:+57547916 None:intergenic
CAAACCCAACAATGCATGAG+AGG 0.555759 1_3:+57548075 None:intergenic
TAAAACAACCCCAGCAAGGG+AGG 0.558692 1_3:+57548511 None:intergenic
GATAGGTTCCTCCCTTGCTG+GGG 0.563080 1_3:-57548519 Msa0127910:intron
AAGGGGAACCAGATGAAAGA+AGG 0.569485 1_3:+57549022 None:intergenic
CAGTAAAACAACCCCAGCAA+GGG 0.570370 1_3:+57548508 None:intergenic
GGTCTTAAACAAAGTTCAAG+AGG 0.574160 1_3:-57548449 Msa0127910:CDS
TATAAGCCTGAAAAGATGAA+GGG 0.580458 1_3:+57549004 None:intergenic
TGCTGCTGCAAATAATATGT+AGG 0.583565 1_3:+57548142 None:intergenic
CCCACTCCATACAAACATCT+GGG 0.584936 1_3:-57548782 Msa0127910:intron
AAACGAGTTCGACTCTCGAA+TGG 0.588877 1_3:+57548833 None:intergenic
TCAACTCTACCTTGATGAGA+GGG 0.596716 1_3:-57548470 Msa0127910:CDS
AGTGCTGAACTATACAAAGC+CGG 0.608175 1_3:-57548185 Msa0127910:CDS
GAGGATAGTACCAAAGGTGA+AGG 0.610524 1_3:+57547935 None:intergenic
GCAGTAAAACAACCCCAGCA+AGG 0.612534 1_3:+57548507 None:intergenic
AGTTTATGTCGCTCAAACAG+AGG 0.616371 1_3:-57547583 Msa0127910:three_prime_UTR
GAATGGAGTCCATCGAGAAG+TGG 0.618017 1_3:+57548850 None:intergenic
TAGCTTGAGGATAGTACCAA+AGG 0.624101 1_3:+57547929 None:intergenic
TGCTGATTGACAGCACGGTG+AGG 0.625751 1_3:+57548946 None:intergenic
AAGTTCGGAGCAATTGACAT+TGG 0.628907 1_3:-57548805 Msa0127910:CDS
ATTAAGGGTATCTCAGCTAG+TGG 0.632261 1_3:+57548047 None:intergenic
CTCCACACAGTACGCAAACG+GGG 0.633266 1_3:-57548979 Msa0127910:CDS
AAACCCAACAATGCATGAGA+GGG 0.633565 1_3:+57548076 None:intergenic
TAACTCTGTCCACATAGTAG+TGG 0.635726 1_3:+57549186 None:intergenic
ATAAGCCTGAAAAGATGAAG+GGG 0.636223 1_3:+57549005 None:intergenic
TCTTAATTAATTTGTCACGG+TGG 0.650683 1_3:-57547614 Msa0127910:three_prime_UTR
GTCTTAAACAAAGTTCAAGA+GGG 0.663204 1_3:-57548448 Msa0127910:CDS
GACCCCGTTTGCGTACTGTG+TGG 0.668600 1_3:+57548977 None:intergenic
TGTGTTGGACCACTACTATG+TGG 0.695704 1_3:-57549195 None:intergenic
CGGAATAGCAGACAACGTCG+AGG 0.727407 1_3:-57548165 Msa0127910:CDS
AGTGAGTACTTACATCAGGG+AGG 0.750946 1_3:+57548405 None:intergenic
AAGAGTGAAAGTGACACACG+AGG 0.759053 1_3:+57548895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTGATTATAAATTTAT+AGG - chr1_3:57548250-57548269 Msa0127910:intron 10.0%
!! GTATTTGATTATAAATTTAT+AGG - chr1_3:57548250-57548269 Msa0127910:intron 10.0%
!! TTATCTTATAAACTTGAAAT+TGG - chr1_3:57548228-57548247 Msa0127910:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr1_3:57548325-57548344 Msa0127910:intron 15.0%
!! TTATCTTATAAACTTGAAAT+TGG - chr1_3:57548228-57548247 Msa0127910:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr1_3:57548325-57548344 Msa0127910:intron 15.0%
!! ATACAAACGCATAAAATATA+TGG + chr1_3:57547901-57547920 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr1_3:57548324-57548343 Msa0127910:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr1_3:57548326-57548345 Msa0127910:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr1_3:57548772-57548791 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr1_3:57548957-57548976 Msa0127910:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr1_3:57549119-57549138 None:intergenic 20.0%
!! ATACAAACGCATAAAATATA+TGG + chr1_3:57547901-57547920 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr1_3:57548324-57548343 Msa0127910:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr1_3:57548326-57548345 Msa0127910:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr1_3:57548772-57548791 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr1_3:57548957-57548976 Msa0127910:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr1_3:57549119-57549138 None:intergenic 20.0%
! ATAAAATTGAATCAACCTCA+TGG - chr1_3:57547428-57547447 Msa0127910:three_prime_UTR 25.0%
! ATGAATTCTAATATTCCATG+AGG + chr1_3:57547446-57547465 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr1_3:57547486-57547505 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr1_3:57547487-57547506 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr1_3:57547946-57547965 Msa0127910:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr1_3:57547998-57548017 Msa0127910:three_prime_UTR 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr1_3:57548038-57548057 Msa0127910:exon 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr1_3:57548545-57548564 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr1_3:57548546-57548565 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr1_3:57548572-57548591 Msa0127910:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr1_3:57548582-57548601 Msa0127910:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr1_3:57548703-57548722 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG - chr1_3:57548892-57548911 Msa0127910:CDS 25.0%
! TGAATTCTATTCTATGTGTA+GGG - chr1_3:57548893-57548912 Msa0127910:CDS 25.0%
! ATAAAATTGAATCAACCTCA+TGG - chr1_3:57547428-57547447 Msa0127910:three_prime_UTR 25.0%
! ATGAATTCTAATATTCCATG+AGG + chr1_3:57547446-57547465 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr1_3:57547486-57547505 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr1_3:57547487-57547506 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr1_3:57547946-57547965 Msa0127910:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr1_3:57547998-57548017 Msa0127910:three_prime_UTR 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr1_3:57548038-57548057 Msa0127910:exon 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr1_3:57548545-57548564 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr1_3:57548546-57548565 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr1_3:57548572-57548591 Msa0127910:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr1_3:57548582-57548601 Msa0127910:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr1_3:57548703-57548722 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG - chr1_3:57548892-57548911 Msa0127910:CDS 25.0%
! TGAATTCTATTCTATGTGTA+GGG - chr1_3:57548893-57548912 Msa0127910:CDS 25.0%
ACAACGAAGTAGAAAATGAT+TGG + chr1_3:57547494-57547513 None:intergenic 30.0%
TATAAGCCTGAAAAGATGAA+GGG + chr1_3:57547573-57547592 None:intergenic 30.0%
TTATAAGCCTGAAAAGATGA+AGG + chr1_3:57547574-57547593 None:intergenic 30.0%
TACCACTCTAAATCATTCAT+TGG - chr1_3:57547851-57547870 Msa0127910:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr1_3:57548045-57548064 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr1_3:57548126-57548145 Msa0127910:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr1_3:57548316-57548335 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr1_3:57548458-57548477 Msa0127910:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr1_3:57548463-57548482 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr1_3:57548661-57548680 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr1_3:57548661-57548680 Msa0127910:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr1_3:57548839-57548858 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr1_3:57548842-57548861 Msa0127910:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr1_3:57548960-57548979 Msa0127910:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr1_3:57549050-57549069 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr1_3:57549070-57549089 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr1_3:57549070-57549089 Msa0127910:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr1_3:57549071-57549090 Msa0127910:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr1_3:57549102-57549121 None:intergenic 30.0%
ACAACGAAGTAGAAAATGAT+TGG + chr1_3:57547494-57547513 None:intergenic 30.0%
TATAAGCCTGAAAAGATGAA+GGG + chr1_3:57547573-57547592 None:intergenic 30.0%
TTATAAGCCTGAAAAGATGA+AGG + chr1_3:57547574-57547593 None:intergenic 30.0%
TACCACTCTAAATCATTCAT+TGG - chr1_3:57547851-57547870 Msa0127910:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr1_3:57548045-57548064 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr1_3:57548126-57548145 Msa0127910:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr1_3:57548316-57548335 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr1_3:57548458-57548477 Msa0127910:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr1_3:57548463-57548482 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr1_3:57548661-57548680 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr1_3:57548661-57548680 Msa0127910:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr1_3:57548839-57548858 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr1_3:57548842-57548861 Msa0127910:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr1_3:57548960-57548979 Msa0127910:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr1_3:57549050-57549069 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr1_3:57549070-57549089 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr1_3:57549070-57549089 Msa0127910:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr1_3:57549071-57549090 Msa0127910:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr1_3:57549102-57549121 None:intergenic 30.0%
GGACAGAGTTAAACATAAAC+AGG - chr1_3:57547400-57547419 Msa0127910:three_prime_UTR 35.0%
ATGCAATACCTTCTTTCATC+TGG - chr1_3:57547544-57547563 Msa0127910:three_prime_UTR 35.0%
ATAAGCCTGAAAAGATGAAG+GGG + chr1_3:57547572-57547591 None:intergenic 35.0%
GACCAATGAATGATTTAGAG+TGG + chr1_3:57547856-57547875 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr1_3:57547990-57548009 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr1_3:57547991-57548010 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr1_3:57548004-57548023 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr1_3:57548125-57548144 Msa0127910:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr1_3:57548435-57548454 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr1_3:57548465-57548484 Msa0127910:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr1_3:57548622-57548641 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr1_3:57548666-57548685 Msa0127910:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr1_3:57548757-57548776 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr1_3:57549074-57549093 None:intergenic 35.0%
GGACAGAGTTAAACATAAAC+AGG - chr1_3:57547400-57547419 Msa0127910:three_prime_UTR 35.0%
ATGCAATACCTTCTTTCATC+TGG - chr1_3:57547544-57547563 Msa0127910:three_prime_UTR 35.0%
ATAAGCCTGAAAAGATGAAG+GGG + chr1_3:57547572-57547591 None:intergenic 35.0%
GACCAATGAATGATTTAGAG+TGG + chr1_3:57547856-57547875 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr1_3:57547990-57548009 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr1_3:57547991-57548010 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr1_3:57548004-57548023 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr1_3:57548125-57548144 Msa0127910:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr1_3:57548435-57548454 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr1_3:57548465-57548484 Msa0127910:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr1_3:57548622-57548641 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr1_3:57548666-57548685 Msa0127910:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr1_3:57548757-57548776 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr1_3:57549074-57549093 None:intergenic 35.0%
TAACTCTGTCCACATAGTAG+TGG + chr1_3:57547391-57547410 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr1_3:57547657-57547676 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr1_3:57547656-57547675 Msa0127910:three_prime_UTR 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr1_3:57547754-57547773 Msa0127910:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr1_3:57547769-57547788 Msa0127910:intron 40.0%
ATCCTACCCAGATGTTTGTA+TGG + chr1_3:57547801-57547820 None:intergenic 40.0%
TACAAACATCTGGGTAGGAT+AGG - chr1_3:57547801-57547820 Msa0127910:intron 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr1_3:57547909-57547928 Msa0127910:three_prime_UTR 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr1_3:57547923-57547942 Msa0127910:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr1_3:57548103-57548122 Msa0127910:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr1_3:57548104-57548123 Msa0127910:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr1_3:57548116-57548135 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr1_3:57548175-57548194 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr1_3:57548176-57548195 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr1_3:57548389-57548408 Msa0127910:intron 40.0%
AAACCCAACAATGCATGAGA+GGG + chr1_3:57548501-57548520 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr1_3:57548530-57548549 None:intergenic 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG + chr1_3:57548617-57548636 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG - chr1_3:57548614-57548633 Msa0127910:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr1_3:57548648-57548667 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr1_3:57548687-57548706 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr1_3:57548991-57549010 Msa0127910:CDS 40.0%
TAACTCTGTCCACATAGTAG+TGG + chr1_3:57547391-57547410 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr1_3:57547657-57547676 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr1_3:57547656-57547675 Msa0127910:three_prime_UTR 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr1_3:57547754-57547773 Msa0127910:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr1_3:57547769-57547788 Msa0127910:intron 40.0%
ATCCTACCCAGATGTTTGTA+TGG + chr1_3:57547801-57547820 None:intergenic 40.0%
TACAAACATCTGGGTAGGAT+AGG - chr1_3:57547801-57547820 Msa0127910:intron 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr1_3:57547909-57547928 Msa0127910:three_prime_UTR 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr1_3:57547923-57547942 Msa0127910:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr1_3:57548103-57548122 Msa0127910:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr1_3:57548104-57548123 Msa0127910:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr1_3:57548116-57548135 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr1_3:57548175-57548194 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr1_3:57548176-57548195 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr1_3:57548389-57548408 Msa0127910:intron 40.0%
AAACCCAACAATGCATGAGA+GGG + chr1_3:57548501-57548520 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr1_3:57548530-57548549 None:intergenic 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG + chr1_3:57548617-57548636 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG - chr1_3:57548614-57548633 Msa0127910:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr1_3:57548648-57548667 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr1_3:57548687-57548706 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr1_3:57548991-57549010 Msa0127910:CDS 40.0%
TAACTCGATGCTCGCACAAA+AGG - chr1_3:57547515-57547534 Msa0127910:three_prime_UTR 45.0%
AAGGGGAACCAGATGAAAGA+AGG + chr1_3:57547555-57547574 None:intergenic 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr1_3:57547564-57547583 Msa0127910:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr1_3:57547593-57547612 Msa0127910:three_prime_UTR 45.0%
AAGAGTGAAAGTGACACACG+AGG + chr1_3:57547682-57547701 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG - chr1_3:57547682-57547701 Msa0127910:intron 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr1_3:57547744-57547763 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr1_3:57547795-57547814 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr1_3:57547792-57547811 Msa0127910:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr1_3:57547796-57547815 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr1_3:57547796-57547815 Msa0127910:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr1_3:57547910-57547929 Msa0127910:three_prime_UTR 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr1_3:57547955-57547974 Msa0127910:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr1_3:57548069-57548088 None:intergenic 45.0%
!! GGGTTGTTTTACTGCTCGAT+TGG - chr1_3:57548075-57548094 Msa0127910:CDS 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr1_3:57548172-57548191 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr1_3:57548470-57548489 Msa0127910:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr1_3:57548494-57548513 Msa0127910:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr1_3:57548495-57548514 Msa0127910:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG + chr1_3:57548502-57548521 None:intergenic 45.0%
! GTTTGGCTATTGATGGCAAC+TGG - chr1_3:57548589-57548608 Msa0127910:intron 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr1_3:57548629-57548648 Msa0127910:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr1_3:57548642-57548661 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG - chr1_3:57548906-57548925 Msa0127910:CDS 45.0%
TAACTCGATGCTCGCACAAA+AGG - chr1_3:57547515-57547534 Msa0127910:three_prime_UTR 45.0%
AAGGGGAACCAGATGAAAGA+AGG + chr1_3:57547555-57547574 None:intergenic 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr1_3:57547564-57547583 Msa0127910:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr1_3:57547593-57547612 Msa0127910:three_prime_UTR 45.0%
AAGAGTGAAAGTGACACACG+AGG + chr1_3:57547682-57547701 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG - chr1_3:57547682-57547701 Msa0127910:intron 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr1_3:57547744-57547763 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr1_3:57547795-57547814 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr1_3:57547792-57547811 Msa0127910:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr1_3:57547796-57547815 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr1_3:57547796-57547815 Msa0127910:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr1_3:57547910-57547929 Msa0127910:three_prime_UTR 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr1_3:57547955-57547974 Msa0127910:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr1_3:57548069-57548088 None:intergenic 45.0%
!! GGGTTGTTTTACTGCTCGAT+TGG - chr1_3:57548075-57548094 Msa0127910:CDS 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr1_3:57548172-57548191 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr1_3:57548470-57548489 Msa0127910:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr1_3:57548494-57548513 Msa0127910:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr1_3:57548495-57548514 Msa0127910:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG + chr1_3:57548502-57548521 None:intergenic 45.0%
! GTTTGGCTATTGATGGCAAC+TGG - chr1_3:57548589-57548608 Msa0127910:intron 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr1_3:57548629-57548648 Msa0127910:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr1_3:57548642-57548661 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG - chr1_3:57548906-57548925 Msa0127910:CDS 45.0%
ACTCCACACAGTACGCAAAC+GGG - chr1_3:57547594-57547613 Msa0127910:three_prime_UTR 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr1_3:57547688-57547707 Msa0127910:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr1_3:57547700-57547719 Msa0127910:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr1_3:57547715-57547734 Msa0127910:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr1_3:57547727-57547746 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr1_3:57547791-57547810 Msa0127910:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr1_3:57548053-57548072 Msa0127910:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr1_3:57548054-57548073 Msa0127910:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr1_3:57548066-57548085 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr1_3:57548070-57548089 None:intergenic 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr1_3:57548411-57548430 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr1_3:57548444-57548463 Msa0127910:CDS 50.0%
CTCTGTCCACATAGTAGTGG+TGG + chr1_3:57547388-57547407 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG - chr1_3:57547594-57547613 Msa0127910:three_prime_UTR 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr1_3:57547688-57547707 Msa0127910:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr1_3:57547700-57547719 Msa0127910:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr1_3:57547715-57547734 Msa0127910:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr1_3:57547727-57547746 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr1_3:57547791-57547810 Msa0127910:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr1_3:57548053-57548072 Msa0127910:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr1_3:57548054-57548073 Msa0127910:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr1_3:57548066-57548085 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr1_3:57548070-57548089 None:intergenic 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr1_3:57548411-57548430 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr1_3:57548444-57548463 Msa0127910:CDS 50.0%
CTCCACACAGTACGCAAACG+GGG - chr1_3:57547595-57547614 Msa0127910:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr1_3:57547631-57547650 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr1_3:57547636-57547655 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr1_3:57548055-57548074 Msa0127910:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr1_3:57548409-57548428 Msa0127910:intron 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr1_3:57548491-57548510 None:intergenic 55.0%
CTCCACACAGTACGCAAACG+GGG - chr1_3:57547595-57547614 Msa0127910:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr1_3:57547631-57547650 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr1_3:57547636-57547655 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr1_3:57548055-57548074 Msa0127910:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr1_3:57548409-57548428 Msa0127910:intron 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr1_3:57548491-57548510 None:intergenic 55.0%
GACCCCGTTTGCGTACTGTG+TGG + chr1_3:57547600-57547619 None:intergenic 60.0%
GACCCCGTTTGCGTACTGTG+TGG + chr1_3:57547600-57547619 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57547387 57549209 57547387 ID=Msa0127910;Name=Msa0127910
chr1_3 mRNA 57547387 57549209 57547387 ID=Msa0127910-mRNA-1;Parent=Msa0127910;Name=Msa0127910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=128|1|1|1|0.5|0.2|5|427|193
chr1_3 exon 57547387 57547682 57547387 ID=Msa0127910-mRNA-1:exon:18290;Parent=Msa0127910-mRNA-1
chr1_3 exon 57547909 57548232 57547909 ID=Msa0127910-mRNA-1:exon:18289;Parent=Msa0127910-mRNA-1
chr1_3 exon 57548418 57548536 57548418 ID=Msa0127910-mRNA-1:exon:18288;Parent=Msa0127910-mRNA-1
chr1_3 exon 57548783 57549118 57548783 ID=Msa0127910-mRNA-1:exon:18287;Parent=Msa0127910-mRNA-1
chr1_3 exon 57549148 57549209 57549148 ID=Msa0127910-mRNA-1:exon:18286;Parent=Msa0127910-mRNA-1
chr1_3 five_prime_UTR 57549148 57549209 57549148 ID=Msa0127910-mRNA-1:five_prime_utr;Parent=Msa0127910-mRNA-1
chr1_3 five_prime_UTR 57549053 57549118 57549053 ID=Msa0127910-mRNA-1:five_prime_utr;Parent=Msa0127910-mRNA-1
chr1_3 CDS 57548783 57549052 57548783 ID=Msa0127910-mRNA-1:cds;Parent=Msa0127910-mRNA-1
chr1_3 CDS 57548418 57548536 57548418 ID=Msa0127910-mRNA-1:cds;Parent=Msa0127910-mRNA-1
chr1_3 CDS 57548040 57548232 57548040 ID=Msa0127910-mRNA-1:cds;Parent=Msa0127910-mRNA-1
chr1_3 three_prime_UTR 57547909 57548039 57547909 ID=Msa0127910-mRNA-1:three_prime_utr;Parent=Msa0127910-mRNA-1
chr1_3 three_prime_UTR 57547387 57547682 57547387 ID=Msa0127910-mRNA-1:three_prime_utr;Parent=Msa0127910-mRNA-1
Gene Sequence

>Msa0127910

ATGCAATACCTTCTTTCATCTGGTTCCCCTTCATCTTTTCAGGCTTATAAACTCCACACAGTACGCAAACGGGGTCTGCTTAAGCCTCACCGTGCTGTCAATCAGCAGAGCCAAACTAGCGTTACAGCTTCATGGCCTCGTGTGTCACTTTCACTCTTCGGCACAGGATTCGTGTTTGGTCCACTTCTCGATGGACTCCATTCGAGAGTCGAACTCGTTTCGTACAAGTTCGGAGCAATTGACATTGGCCCACTCCATACAAACATCTGGGTTCCTCCCTTGCTGGGGTTGTTTTACTGCTCGATTGGTTTGCTTCAACTCTACCTTGATGAGAGGGTCTTAAACAAAGTTCAAGAGGGAAGTTTAACAAAAACAATATCCTCCCTGATATTAGTAGCGTTGTTCATAGAGTTGAGTGCTGAACTATACAAAGCCGGAATAGCAGACAACGTCGAGGCCTACATATTATTTGCAGCAGCAGAGTTCCTATGGTTTTTGTTGAATGGAACATGGCCAGGCTTCACCCTCTCATGCATTGTTGGGTTTGCTTGTCCACTAGCTGAGATACCCTTAATGAAGTAA

Protein sequence

>Msa0127910

MQYLLSSGSPSSFQAYKLHTVRKRGLLKPHRAVNQQSQTSVTASWPRVSLSLFGTGFVFGPLLDGLHSRVELVSYKFGAIDIGPLHTNIWVPPLLGLFYCSIGLLQLYLDERVLNKVQEGSLTKTISSLILVALFIELSAELYKAGIADNVEAYILFAAAEFLWFLLNGTWPGFTLSCIVGFACPLAEIPLMK*