AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121720 MtrunA17_Chr7g0249461 97.312 186 5 0 1 186 1 186 2.20e-130 363
Msa1121720 MtrunA17_Chr5g0404831 37.736 106 62 2 79 181 8 112 2.32e-18 76.6
Msa1121720 MtrunA17_Chr1g0155721 40.000 105 59 2 79 180 6 109 3.90e-17 73.6
Msa1121720 MtrunA17_Chr3g0142051 42.683 82 46 1 99 180 29 109 6.45e-16 70.5
Msa1121720 MtrunA17_Chr7g0216481 39.744 78 46 1 99 176 49 125 2.88e-15 68.9
Msa1121720 MtrunA17_Chr3g0125821 32.867 143 77 6 34 171 31 159 1.75e-13 65.5
Msa1121720 MtrunA17_Chr8g0334481 36.905 84 51 2 94 176 43 125 3.05e-13 63.9
Msa1121720 MtrunA17_Chr7g0245141 39.744 78 46 1 99 176 47 123 7.52e-12 60.1
Msa1121720 MtrunA17_Chr6g0488561 33.824 68 44 1 93 160 90 156 3.17e-11 60.1
Msa1121720 MtrunA17_Chr8g0393201 43.836 73 40 1 99 171 250 321 4.91e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121720 AT5G16400.1 81.679 131 22 1 56 186 57 185 7.69e-73 218
Msa1121720 AT3G02730.1 63.587 184 56 3 4 186 2 175 5.39e-72 215
Msa1121720 AT3G51030.1 44.737 76 41 1 101 176 31 105 7.17e-17 73.2
Msa1121720 AT5G42980.1 37.975 79 48 1 99 177 28 105 4.25e-16 71.2
Msa1121720 AT5G39950.1 38.202 89 52 2 98 185 47 133 8.66e-16 70.9
Msa1121720 AT1G45145.1 35.897 78 49 1 99 176 28 104 1.74e-15 69.7
Msa1121720 AT1G19730.1 34.314 102 62 4 79 176 6 106 3.95e-15 68.6
Msa1121720 AT1G59730.1 31.707 123 76 3 65 184 11 128 7.13e-13 63.2
Msa1121720 AT4G26160.1 33.673 98 61 3 87 181 102 198 3.05e-12 63.2
Msa1121720 AT4G29670.2 32.432 74 49 1 87 160 112 184 2.66e-11 60.8
Msa1121720 AT1G69880.1 37.209 86 51 2 93 176 52 136 3.39e-11 58.9
Msa1121720 AT4G29670.1 32.432 74 49 1 87 160 112 184 3.52e-11 60.5
Msa1121720 AT3G08710.2 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1121720 AT3G08710.3 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1121720 AT3G08710.1 35.897 78 49 1 99 176 46 122 4.30e-11 58.5

Find 100 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTAATTCTTTGTATTT+TGG 0.153277 7_3:+71856691 None:intergenic
GCCATCCCAAAGTGTATTTC+TGG 0.177064 7_3:-71855978 Msa1121720:three_prime_UTR
AGAATTAGCTGAGAAGTATT+TGG 0.241894 7_3:-71856680 Msa1121720:CDS
AACACTCTTGGAATTCAAAA+TGG 0.249767 7_3:+71858967 None:intergenic
ATCTCTGCACCTCCCCTAAA+TGG 0.258474 7_3:-71859072 Msa1121720:CDS
CCTAATGTACATGGGTATTA+TGG 0.259369 7_3:-71856097 Msa1121720:three_prime_UTR
CACCTTAATTCCTAGCTCTT+TGG 0.269465 7_3:+71856520 None:intergenic
TAATCCATACCTTGTTATCT+TGG 0.303298 7_3:+71856629 None:intergenic
TCATTAAGTGTATGGTGTTT+TGG 0.304234 7_3:+71856068 None:intergenic
TGGAGCTAAATATGATGATT+TGG 0.335332 7_3:-71856447 Msa1121720:CDS
GGCCAAAGAGCTAGGAATTA+AGG 0.347175 7_3:-71856522 Msa1121720:CDS
TGATCATGGTCTATCTATAA+AGG 0.357562 7_3:-71856203 Msa1121720:three_prime_UTR
ACGGTGGTGCCAATCCATTT+AGG 0.358436 7_3:+71859058 None:intergenic
CGGTGGTGCCAATCCATTTA+GGG 0.375482 7_3:+71859059 None:intergenic
CGTTAATATGAGGGTGGAAT+TGG 0.376541 7_3:+71859246 None:intergenic
CCATAATACCCATGTACATT+AGG 0.379105 7_3:+71856097 None:intergenic
GATTGTGTATGATATTCTTT+TGG 0.384247 7_3:+71859304 None:intergenic
TTGTCCAGCCGGAATGATCT+TGG 0.396843 7_3:+71856015 None:intergenic
TTGCCCTTGGAGTTTGTGTA+TGG 0.405123 7_3:+71859211 None:intergenic
TTCTGTTATCAACTTGATCA+TGG 0.406946 7_3:-71856217 Msa1121720:three_prime_UTR
AAGGTTGTAAAAGAAGTAAC+TGG 0.408021 7_3:-71856467 Msa1121720:CDS
GCTCTTGAGATTAACACTCT+TGG 0.426875 7_3:+71858955 None:intergenic
TGTCCAGCCGGAATGATCTT+GGG 0.431711 7_3:+71856016 None:intergenic
AATTCCTAGCTCTTTGGCCA+AGG 0.431968 7_3:+71856526 None:intergenic
TCTCGCACCCAAGATCATTC+CGG 0.433558 7_3:-71856023 Msa1121720:three_prime_UTR
GATGTGAAGAGGAGGAAGAG+TGG 0.442221 7_3:+71859165 None:intergenic
GCATGTGGAGAGTGAAGAAT+TGG 0.443078 7_3:+71859113 None:intergenic
ATTGGTAAATTTGAATGAAA+CGG 0.444192 7_3:+71859264 None:intergenic
CAAGGGATACCTAATGTACA+TGG 0.446648 7_3:-71856106 Msa1121720:three_prime_UTR
GAATTGGACTCTCTGAGATA+TGG 0.447692 7_3:+71859129 None:intergenic
TTGTTGCGGTCGTTAATATG+AGG 0.450430 7_3:+71859236 None:intergenic
TTCGTCCAGAAATACACTTT+GGG 0.462223 7_3:+71855973 None:intergenic
GCATCCAATTATGTAAAAGA+AGG 0.469447 7_3:-71859343 Msa1121720:five_prime_UTR
TTTCGTCCAGAAATACACTT+TGG 0.473177 7_3:+71855972 None:intergenic
ATGTGAAGAGGAGGAAGAGT+GGG 0.484769 7_3:+71859166 None:intergenic
ATTCCTAGCTCTTTGGCCAA+GGG 0.487064 7_3:+71856527 None:intergenic
AGATTAAGAGCCATTGGTGT+TGG 0.490679 7_3:+71859091 None:intergenic
GCTAGACGTCATTAAGTGTA+TGG 0.499786 7_3:+71856060 None:intergenic
TTTCTGTGTAAGATCAAGCT+TGG 0.505371 7_3:-71858909 Msa1121720:CDS
CAGCCCTTGGCCAAAGAGCT+AGG 0.508539 7_3:-71856530 Msa1121720:CDS
GCTAGAACGAACTGTGTCAA+TGG 0.511358 7_3:+71856418 None:intergenic
ATTGATTATTCCCTATGCAT+AGG 0.511444 7_3:-71856260 Msa1121720:three_prime_UTR
ACTGGCCCCACCGTGACGGT+TGG 0.511801 7_3:-71858881 Msa1121720:CDS
AGATCAAGCTTGGAAACTAC+TGG 0.514531 7_3:-71858899 Msa1121720:CDS
TTTGGAGCTATCACTTTGCA+AGG 0.518801 7_3:+71856709 None:intergenic
TTGATTATTCCCTATGCATA+GGG 0.522813 7_3:-71856259 Msa1121720:three_prime_UTR
GAGATATGGTCGTGTGGTGG+TGG 0.529036 7_3:+71859143 None:intergenic
AGCTTAAGCTTGAGGAAGAG+TGG 0.529887 7_3:-71858935 Msa1121720:CDS
ATCTCAAGAGCTTAAGCTTG+AGG 0.533549 7_3:-71858943 Msa1121720:CDS
TGAAATGACGGTGTTGCCCT+TGG 0.535828 7_3:+71859198 None:intergenic
TGCACCTCCCCTAAATGGAT+TGG 0.536322 7_3:-71859067 Msa1121720:CDS
GTGCAGAGATTAAGAGCCAT+TGG 0.539401 7_3:+71859085 None:intergenic
GTGTGGTGGTGGATGTGAAG+AGG 0.557719 7_3:+71859154 None:intergenic
TCACCGGCGGCATTAACGAT+GGG 0.558656 7_3:+71858824 None:intergenic
ATCACCGGCGGCATTAACGA+TGG 0.564737 7_3:+71858823 None:intergenic
GCTTAAGCTTGAGGAAGAGT+GGG 0.565601 7_3:-71858934 Msa1121720:CDS
GCACCCAAGATCATTCCGGC+TGG 0.567036 7_3:-71856019 Msa1121720:three_prime_UTR
CATCCAATTATGTAAAAGAA+GGG 0.571110 7_3:-71859342 Msa1121720:five_prime_UTR
TGCATTAGAAATACTTACAG+AGG 0.576470 7_3:+71856342 None:intergenic
AACTACTGGCCCCACCGTGA+CGG 0.577342 7_3:-71858885 Msa1121720:CDS
AAGTTAACAAGGATACGTTC+TGG 0.581922 7_3:-71858847 Msa1121720:CDS
TCTCCACATGCCAACACCAA+TGG 0.584573 7_3:-71859101 Msa1121720:exon
TCCAGAAATACACTTTGGGA+TGG 0.585187 7_3:+71855977 None:intergenic
CACTTAATGACGTCTAGCAA+CGG 0.587444 7_3:-71856055 Msa1121720:three_prime_UTR
TCTTCATCGAAGCTATCACT+TGG 0.591272 7_3:-71859022 Msa1121720:CDS
GAGCCATTGGTGTTGGCATG+TGG 0.594989 7_3:+71859098 None:intergenic
TGTTGCGGTCGTTAATATGA+GGG 0.597154 7_3:+71859237 None:intergenic
ACTTGTCCAACCGTCACGGT+GGG 0.599149 7_3:+71858875 None:intergenic
AAATTGAGTCAGTGCTGTCA+AGG 0.600393 7_3:-71856124 Msa1121720:three_prime_UTR
CTCTCTGAGATATGGTCGTG+TGG 0.615715 7_3:+71859137 None:intergenic
TCCTCGACATGTACACCCAA+TGG 0.618148 7_3:-71858790 Msa1121720:intron
GGTGTACATGTCGAGGACGA+CGG 0.623867 7_3:+71858796 None:intergenic
AACTTGTCCAACCGTCACGG+TGG 0.625736 7_3:+71858874 None:intergenic
GCATTAGAAATACTTACAGA+GGG 0.629622 7_3:+71856343 None:intergenic
AATTGAGTCAGTGCTGTCAA+GGG 0.630402 7_3:-71856123 Msa1121720:three_prime_UTR
TGCGGTCGTTAATATGAGGG+TGG 0.630527 7_3:+71859240 None:intergenic
TAAAATTCTGAAAGACAACA+AGG 0.632667 7_3:-71856486 Msa1121720:CDS
GGGAGTTATGAATGAAATGA+CGG 0.633006 7_3:+71859186 None:intergenic
ACCATTGGGTGTACATGTCG+AGG 0.633123 7_3:+71858789 None:intergenic
CTTGTCCAACCGTCACGGTG+GGG 0.634010 7_3:+71858876 None:intergenic
GTTTGTGTATGGTATTGTTG+CGG 0.634269 7_3:+71859222 None:intergenic
GGTGGTGCCAATCCATTTAG+GGG 0.641245 7_3:+71859060 None:intergenic
ACAAGTTACTGAAGTTAACA+AGG 0.643513 7_3:-71858858 Msa1121720:CDS
TGAAGAAGTACTATCGAAGA+CGG 0.654052 7_3:+71859039 None:intergenic
AATACCATACACAAACTCCA+AGG 0.658663 7_3:-71859215 Msa1121720:five_prime_UTR
AGTAACTTGTCCAACCGTCA+CGG 0.658820 7_3:+71858871 None:intergenic
TCTGAGATATGGTCGTGTGG+TGG 0.667266 7_3:+71859140 None:intergenic
ATACCATACACAAACTCCAA+GGG 0.668173 7_3:-71859214 Msa1121720:five_prime_UTR
TGGTGGTGGATGTGAAGAGG+AGG 0.669679 7_3:+71859157 None:intergenic
CAAAGAGCTAGGAATTAAGG+TGG 0.670646 7_3:-71856519 Msa1121720:CDS
TGATTGCAACCAAGATAACA+AGG 0.674067 7_3:-71856638 Msa1121720:intron
GGTGCCAATCCATTTAGGGG+AGG 0.674114 7_3:+71859063 None:intergenic
AAGGGATACCTAATGTACAT+GGG 0.679919 7_3:-71856105 Msa1121720:three_prime_UTR
TGCAATTGTAAGCTGCTGAG+TGG 0.681997 7_3:-71856323 Msa1121720:three_prime_UTR
TCATGGTCTATCTATAAAGG+TGG 0.684533 7_3:-71856200 Msa1121720:three_prime_UTR
TACAGCTTACAACAACAACA+TGG 0.685248 7_3:+71856283 None:intergenic
ATTCCGGCTGGACAAAACAC+AGG 0.688292 7_3:-71856007 Msa1121720:three_prime_UTR
TTAATGACGTCTAGCAACGG+AGG 0.698236 7_3:-71856052 Msa1121720:three_prime_UTR
AAGCTGCTGAGTGGAAGATG+AGG 0.731291 7_3:-71856314 Msa1121720:three_prime_UTR
AGAAGTACTATCGAAGACGG+TGG 0.755717 7_3:+71859042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATTAGTTTTTTAAAA+AGG - chr7_3:71858274-71858293 Msa1121720:intron 10.0%
!!! TTTCATTAGTTTTTTAAAAA+GGG - chr7_3:71858275-71858294 Msa1121720:intron 10.0%
!! ATGAAATAAAATATACCATT+GGG + chr7_3:71856534-71856553 None:intergenic 15.0%
!! AATGAAATAAAATATACCAT+TGG + chr7_3:71856535-71856554 None:intergenic 15.0%
!! GCATTGTATATTAAAATATA+AGG + chr7_3:71857790-71857809 None:intergenic 15.0%
!! GATAAAAAGATTAATTGATT+TGG - chr7_3:71858337-71858356 Msa1121720:intron 15.0%
!! ATTGGTAAATTTGAATGAAA+CGG + chr7_3:71856045-71856064 None:intergenic 20.0%
!! TTCATGATAAGAATAGTTAA+TGG + chr7_3:71856583-71856602 None:intergenic 20.0%
!!! ATGATTTGGTAAACTATAAT+TGG - chr7_3:71857162-71857181 Msa1121720:intron 20.0%
!!! AAAAGGTTTTTTCTAAACTA+AGG - chr7_3:71857582-71857601 Msa1121720:intron 20.0%
!!! AAAGGTTTTTTCTAAACTAA+GGG - chr7_3:71857583-71857602 Msa1121720:intron 20.0%
!!! TTTTAATTGTGAAACAATCA+AGG - chr7_3:71857631-71857650 Msa1121720:intron 20.0%
!! TTTAATTGTGAAACAATCAA+GGG - chr7_3:71857632-71857651 Msa1121720:intron 20.0%
!!! TACTAAAGTACTTATTTTGT+AGG - chr7_3:71857887-71857906 Msa1121720:intron 20.0%
!! CAATTAAACATCATACTTAT+CGG - chr7_3:71857985-71858004 Msa1121720:intron 20.0%
!! CTAAATATAAAGTGTAGATT+TGG - chr7_3:71858532-71858551 Msa1121720:intron 20.0%
!!! TCTTTCAGAATTTTAAAAGT+GGG + chr7_3:71858815-71858834 None:intergenic 20.0%
!!! TGATATTTTTACATAGCAAA+GGG + chr7_3:71858934-71858953 None:intergenic 20.0%
!!! ATGATATTTTTACATAGCAA+AGG + chr7_3:71858935-71858954 None:intergenic 20.0%
! CATCCAATTATGTAAAAGAA+GGG - chr7_3:71855964-71855983 Msa1121720:three_prime_UTR 25.0%
!! GATTGTGTATGATATTCTTT+TGG + chr7_3:71856005-71856024 None:intergenic 25.0%
! ATGTCAATATTCTCTAAGTT+TGG + chr7_3:71856909-71856928 None:intergenic 25.0%
!! CTTATCATCATAAACCATTT+TGG + chr7_3:71856973-71856992 None:intergenic 25.0%
! AGCTTATGCTAATATCATTA+AGG - chr7_3:71857030-71857049 Msa1121720:intron 25.0%
!! CGTTCTCTAAATATGTTTTA+TGG - chr7_3:71857113-71857132 Msa1121720:intron 25.0%
! TCATAAAGCACAATTGAAAA+CGG + chr7_3:71857413-71857432 None:intergenic 25.0%
! TACATTATATGATGAAGAGT+GGG - chr7_3:71857559-71857578 Msa1121720:intron 25.0%
!!! AAGGTTTTTTCTAAACTAAG+GGG - chr7_3:71857584-71857603 Msa1121720:intron 25.0%
!! GATATATGCATAAAAGGTTT+TGG + chr7_3:71857675-71857694 None:intergenic 25.0%
!!! GTGTTATTGACTTATGTTTT+AGG - chr7_3:71858060-71858079 Msa1121720:intron 25.0%
! TAAACTCAAAAATCAATCTC+TGG - chr7_3:71858435-71858454 Msa1121720:intron 25.0%
! TTCATTGTAAATCATATCCA+AGG + chr7_3:71858562-71858581 None:intergenic 25.0%
!! TGATTTACAATGAATTTTGC+AGG - chr7_3:71858568-71858587 Msa1121720:intron 25.0%
!! TCAGCTAATTCTTTGTATTT+TGG + chr7_3:71858618-71858637 None:intergenic 25.0%
! ACATAGTGTTTAATGGTTAT+TGG - chr7_3:71858753-71858772 Msa1121720:intron 25.0%
!!! GTCTTTCAGAATTTTAAAAG+TGG + chr7_3:71858816-71858835 None:intergenic 25.0%
!! TAAAATTCTGAAAGACAACA+AGG - chr7_3:71858820-71858839 Msa1121720:CDS 25.0%
GCATCCAATTATGTAAAAGA+AGG - chr7_3:71855963-71855982 Msa1121720:three_prime_UTR 30.0%
! TGACCCTTCTTTTACATAAT+TGG + chr7_3:71855970-71855989 None:intergenic 30.0%
AACACTCTTGGAATTCAAAA+TGG + chr7_3:71856342-71856361 None:intergenic 30.0%
ACAAGTTACTGAAGTTAACA+AGG - chr7_3:71856448-71856467 Msa1121720:CDS 30.0%
TAAGATGCTAATAGACTCTA+AGG - chr7_3:71856710-71856729 Msa1121720:CDS 30.0%
GATATCGATGTATCTTTATC+AGG + chr7_3:71856879-71856898 None:intergenic 30.0%
ACCAATCAATTAGAGAATGA+GGG - chr7_3:71856937-71856956 Msa1121720:intron 30.0%
! TATGGAGTTTGAATGTGTTT+TGG - chr7_3:71857131-71857150 Msa1121720:intron 30.0%
! TTTTGGCAAGCAATATGATT+TGG - chr7_3:71857148-71857167 Msa1121720:intron 30.0%
GTTGAGTAAAACAGAAAACA+GGG + chr7_3:71857250-71857269 None:intergenic 30.0%
!!! CGTTACTAGTTACTTTTACT+TGG - chr7_3:71857279-71857298 Msa1121720:intron 30.0%
!!! TAGTTTTGTGACTTGATTGT+TGG - chr7_3:71857351-71857370 Msa1121720:intron 30.0%
ATAAAGCACAATTGAAAACG+GGG + chr7_3:71857411-71857430 None:intergenic 30.0%
CATAAAGCACAATTGAAAAC+GGG + chr7_3:71857412-71857431 None:intergenic 30.0%
ATCGTATCTCTATATAAGTG+AGG - chr7_3:71857504-71857523 Msa1121720:intron 30.0%
! GTTTAAGACAAATCTCTTCA+AGG - chr7_3:71857526-71857545 Msa1121720:intron 30.0%
GTACATTATATGATGAAGAG+TGG - chr7_3:71857558-71857577 Msa1121720:intron 30.0%
TTCTAAACTAAGGGGTTTAT+TGG - chr7_3:71857592-71857611 Msa1121720:intron 30.0%
TGCATGGATATATGCATAAA+AGG + chr7_3:71857681-71857700 None:intergenic 30.0%
ATATACAATGCCTGAATTTG+AGG - chr7_3:71857799-71857818 Msa1121720:intron 30.0%
! CTTCTTTTTACCTCAAATTC+AGG + chr7_3:71857812-71857831 None:intergenic 30.0%
! GAATTTGAGGTAAAAAGAAG+AGG - chr7_3:71857812-71857831 Msa1121720:intron 30.0%
AAAAAGAAGAGGTAATTCAC+TGG - chr7_3:71857823-71857842 Msa1121720:intron 30.0%
TTTGTAGGCTGAATATCAAA+AGG - chr7_3:71857902-71857921 Msa1121720:intron 30.0%
GATGTTTAATTGTATGCCAA+AGG + chr7_3:71857977-71857996 None:intergenic 30.0%
AAACTAATGAAATGATCAGC+TGG + chr7_3:71858267-71858286 None:intergenic 30.0%
CATGATCCTTATAATAGTCA+TGG + chr7_3:71858474-71858493 None:intergenic 30.0%
ACACTTTATATTTAGCAGCA+GGG + chr7_3:71858527-71858546 None:intergenic 30.0%
TACACTTTATATTTAGCAGC+AGG + chr7_3:71858528-71858547 None:intergenic 30.0%
!! AGAATTAGCTGAGAAGTATT+TGG - chr7_3:71858626-71858645 Msa1121720:intron 30.0%
! TAATCCATACCTTGTTATCT+TGG + chr7_3:71858680-71858699 None:intergenic 30.0%
ACTGAATAGTAGATAGTCTA+TGG - chr7_3:71858708-71858727 Msa1121720:intron 30.0%
TAACCATTAAACACTATGTC+AGG + chr7_3:71858752-71858771 None:intergenic 30.0%
AAGGTTGTAAAAGAAGTAAC+TGG - chr7_3:71858839-71858858 Msa1121720:CDS 30.0%
TGGAGCTAAATATGATGATT+TGG - chr7_3:71858859-71858878 Msa1121720:CDS 30.0%
GCATTAGAAATACTTACAGA+GGG + chr7_3:71858966-71858985 None:intergenic 30.0%
TGCATTAGAAATACTTACAG+AGG + chr7_3:71858967-71858986 None:intergenic 30.0%
ATTGATTATTCCCTATGCAT+AGG - chr7_3:71859046-71859065 Msa1121720:CDS 30.0%
TTGATTATTCCCTATGCATA+GGG - chr7_3:71859047-71859066 Msa1121720:CDS 30.0%
TTCTGTTATCAACTTGATCA+TGG - chr7_3:71859089-71859108 Msa1121720:CDS 30.0%
TGATCATGGTCTATCTATAA+AGG - chr7_3:71859103-71859122 Msa1121720:exon 30.0%
! TCATTAAGTGTATGGTGTTT+TGG + chr7_3:71859241-71859260 None:intergenic 30.0%
GTTTGTGTATGGTATTGTTG+CGG + chr7_3:71856087-71856106 None:intergenic 35.0%
AATACCATACACAAACTCCA+AGG - chr7_3:71856091-71856110 Msa1121720:three_prime_UTR 35.0%
ATACCATACACAAACTCCAA+GGG - chr7_3:71856092-71856111 Msa1121720:three_prime_UTR 35.0%
GGGAGTTATGAATGAAATGA+CGG + chr7_3:71856123-71856142 None:intergenic 35.0%
!! TGAAGAAGTACTATCGAAGA+CGG + chr7_3:71856270-71856289 None:intergenic 35.0%
TTTCTGTGTAAGATCAAGCT+TGG - chr7_3:71856397-71856416 Msa1121720:exon 35.0%
AAGTTAACAAGGATACGTTC+TGG - chr7_3:71856459-71856478 Msa1121720:CDS 35.0%
AAGGTAGATTCGATATGTTG+AGG - chr7_3:71856729-71856748 Msa1121720:intron 35.0%
GACCAATCAATTAGAGAATG+AGG - chr7_3:71856936-71856955 Msa1121720:intron 35.0%
ACCCTCATTCTCTAATTGAT+TGG + chr7_3:71856941-71856960 None:intergenic 35.0%
GGTTGAGTAAAACAGAAAAC+AGG + chr7_3:71857251-71857270 None:intergenic 35.0%
! ATGTTGTTTAGTGACACGTT+GGG + chr7_3:71857473-71857492 None:intergenic 35.0%
ATATGATGAAGAGTGGGAAA+AGG - chr7_3:71857565-71857584 Msa1121720:intron 35.0%
TAAACTAAGGGGTTTATTGG+AGG - chr7_3:71857595-71857614 Msa1121720:intron 35.0%
AAACTAAGGGGTTTATTGGA+GGG - chr7_3:71857596-71857615 Msa1121720:intron 35.0%
TGCAGTTATGGTAAAATGCA+TGG + chr7_3:71857697-71857716 None:intergenic 35.0%
! TTTGAAGCTTTCAACCAGAT+TGG + chr7_3:71857949-71857968 None:intergenic 35.0%
GTTTAGCAAAGACCAATTCA+AGG - chr7_3:71858017-71858036 Msa1121720:intron 35.0%
ATGTACATGTAGCCAAATCA+GGG - chr7_3:71858088-71858107 Msa1121720:intron 35.0%
ATAATCCACTCTTATGCACA+TGG + chr7_3:71858193-71858212 None:intergenic 35.0%
TGGATTATTCATGACTCATG+AGG - chr7_3:71858205-71858224 Msa1121720:intron 35.0%
GGATTATTCATGACTCATGA+GGG - chr7_3:71858206-71858225 Msa1121720:intron 35.0%
TCAAAAATCAATCTCTGGTG+TGG - chr7_3:71858440-71858459 Msa1121720:intron 35.0%
TTGCAGCCATGACTATTATA+AGG - chr7_3:71858465-71858484 Msa1121720:intron 35.0%
!! CAGGGATAAAAGTGTCATAA+GGG + chr7_3:71858509-71858528 None:intergenic 35.0%
AGTGTAGATTTGGATAACCT+TGG - chr7_3:71858542-71858561 Msa1121720:intron 35.0%
! TACAATGAATTTTGCAGGTG+TGG - chr7_3:71858573-71858592 Msa1121720:intron 35.0%
TGATTGCAACCAAGATAACA+AGG - chr7_3:71858668-71858687 Msa1121720:intron 35.0%
TACAGCTTACAACAACAACA+TGG + chr7_3:71859026-71859045 None:intergenic 35.0%
TCATGGTCTATCTATAAAGG+TGG - chr7_3:71859106-71859125 Msa1121720:exon 35.0%
AAGGGATACCTAATGTACAT+GGG - chr7_3:71859201-71859220 Msa1121720:five_prime_UTR 35.0%
CCATAATACCCATGTACATT+AGG + chr7_3:71859212-71859231 None:intergenic 35.0%
CCTAATGTACATGGGTATTA+TGG - chr7_3:71859209-71859228 Msa1121720:five_prime_UTR 35.0%
TTCGTCCAGAAATACACTTT+GGG + chr7_3:71859336-71859355 None:intergenic 35.0%
TTTCGTCCAGAAATACACTT+TGG + chr7_3:71859337-71859356 None:intergenic 35.0%
CGTTAATATGAGGGTGGAAT+TGG + chr7_3:71856063-71856082 None:intergenic 40.0%
TGTTGCGGTCGTTAATATGA+GGG + chr7_3:71856072-71856091 None:intergenic 40.0%
TTGTTGCGGTCGTTAATATG+AGG + chr7_3:71856073-71856092 None:intergenic 40.0%
!! GAATTGGACTCTCTGAGATA+TGG + chr7_3:71856180-71856199 None:intergenic 40.0%
AGATTAAGAGCCATTGGTGT+TGG + chr7_3:71856218-71856237 None:intergenic 40.0%
TCTTCATCGAAGCTATCACT+TGG - chr7_3:71856284-71856303 Msa1121720:three_prime_UTR 40.0%
GCTCTTGAGATTAACACTCT+TGG + chr7_3:71856354-71856373 None:intergenic 40.0%
ATCTCAAGAGCTTAAGCTTG+AGG - chr7_3:71856363-71856382 Msa1121720:three_prime_UTR 40.0%
AGATCAAGCTTGGAAACTAC+TGG - chr7_3:71856407-71856426 Msa1121720:exon 40.0%
! AGCTCTAGCTGTATGAAACA+AGG + chr7_3:71856662-71856681 None:intergenic 40.0%
ATACAGCTAGAGCTAGCTAT+AGG - chr7_3:71856668-71856687 Msa1121720:CDS 40.0%
TTTGTGTAAGAGAGTTTCGC+AGG - chr7_3:71856780-71856799 Msa1121720:intron 40.0%
TTGTGTAAGAGAGTTTCGCA+GGG - chr7_3:71856781-71856800 Msa1121720:intron 40.0%
AATTAGAGAATGAGGGTCGA+AGG - chr7_3:71856944-71856963 Msa1121720:intron 40.0%
GTCCATTGATCAGTACATCT+TGG - chr7_3:71857303-71857322 Msa1121720:intron 40.0%
! CACCAAGATGTACTGATCAA+TGG + chr7_3:71857308-71857327 None:intergenic 40.0%
! GATGTTGTTTAGTGACACGT+TGG + chr7_3:71857474-71857493 None:intergenic 40.0%
ACAGCTACTACTTGCAGTTA+TGG + chr7_3:71857709-71857728 None:intergenic 40.0%
! GAAGAGGTAATTCACTGGTT+TGG - chr7_3:71857828-71857847 Msa1121720:intron 40.0%
AGCATTCATGCTTTCCAATC+TGG - chr7_3:71857932-71857951 Msa1121720:intron 40.0%
CTGGTTGAAAGCTTCAAAGT+TGG - chr7_3:71857951-71857970 Msa1121720:intron 40.0%
!! AAAGCTTCAAAGTTGGCCTT+TGG - chr7_3:71857958-71857977 Msa1121720:intron 40.0%
GATGTACATGTAGCCAAATC+AGG - chr7_3:71858087-71858106 Msa1121720:intron 40.0%
TATACAAGCACACCCTGATT+TGG + chr7_3:71858103-71858122 None:intergenic 40.0%
TTTCTCCATGTGCATAAGAG+TGG - chr7_3:71858185-71858204 Msa1121720:intron 40.0%
TCAAACTCTGATGTACCACT+GGG - chr7_3:71858370-71858389 Msa1121720:intron 40.0%
!! GCAGGGATAAAAGTGTCATA+AGG + chr7_3:71858510-71858529 None:intergenic 40.0%
! TTTGGAGCTATCACTTTGCA+AGG + chr7_3:71858600-71858619 None:intergenic 40.0%
GCAACCAAGATAACAAGGTA+TGG - chr7_3:71858673-71858692 Msa1121720:intron 40.0%
TGGCCTGACATAGTGTTTAA+TGG - chr7_3:71858746-71858765 Msa1121720:intron 40.0%
! CACCTTAATTCCTAGCTCTT+TGG + chr7_3:71858789-71858808 None:intergenic 40.0%
CAAAGAGCTAGGAATTAAGG+TGG - chr7_3:71858787-71858806 Msa1121720:intron 40.0%
! GCAACTTTTCCCTATGCATA+GGG + chr7_3:71859059-71859078 None:intergenic 40.0%
! AGCAACTTTTCCCTATGCAT+AGG + chr7_3:71859060-71859079 None:intergenic 40.0%
AAATTGAGTCAGTGCTGTCA+AGG - chr7_3:71859182-71859201 Msa1121720:five_prime_UTR 40.0%
AATTGAGTCAGTGCTGTCAA+GGG - chr7_3:71859183-71859202 Msa1121720:five_prime_UTR 40.0%
CAAGGGATACCTAATGTACA+TGG - chr7_3:71859200-71859219 Msa1121720:five_prime_UTR 40.0%
GCTAGACGTCATTAAGTGTA+TGG + chr7_3:71859249-71859268 None:intergenic 40.0%
CACTTAATGACGTCTAGCAA+CGG - chr7_3:71859251-71859270 Msa1121720:five_prime_UTR 40.0%
! TCCAGAAATACACTTTGGGA+TGG + chr7_3:71859332-71859351 None:intergenic 40.0%
TTGCCCTTGGAGTTTGTGTA+TGG + chr7_3:71856098-71856117 None:intergenic 45.0%
ATGTGAAGAGGAGGAAGAGT+GGG + chr7_3:71856143-71856162 None:intergenic 45.0%
GCATGTGGAGAGTGAAGAAT+TGG + chr7_3:71856196-71856215 None:intergenic 45.0%
GTGCAGAGATTAAGAGCCAT+TGG + chr7_3:71856224-71856243 None:intergenic 45.0%
!! AGAAGTACTATCGAAGACGG+TGG + chr7_3:71856267-71856286 None:intergenic 45.0%
AGCTTAAGCTTGAGGAAGAG+TGG - chr7_3:71856371-71856390 Msa1121720:three_prime_UTR 45.0%
GCTTAAGCTTGAGGAAGAGT+GGG - chr7_3:71856372-71856391 Msa1121720:three_prime_UTR 45.0%
! AGTAACTTGTCCAACCGTCA+CGG + chr7_3:71856438-71856457 None:intergenic 45.0%
ATGATTAACGTCGCCACGTT+AGG - chr7_3:71856832-71856851 Msa1121720:intron 45.0%
CCATGAACTTCTACCTAACG+TGG + chr7_3:71856848-71856867 None:intergenic 45.0%
CCACGTTAGGTAGAAGTTCA+TGG - chr7_3:71856845-71856864 Msa1121720:intron 45.0%
!! AGGGTCGAAGGTATCCAAAA+TGG - chr7_3:71856956-71856975 Msa1121720:intron 45.0%
GTAACTAGTAACGCTGTGCA+TGG + chr7_3:71857272-71857291 None:intergenic 45.0%
TTGTTTAGTGACACGTTGGG+AGG + chr7_3:71857470-71857489 None:intergenic 45.0%
TCATGACTCATGAGGGTTGT+TGG - chr7_3:71858213-71858232 Msa1121720:intron 45.0%
CATGACTCATGAGGGTTGTT+GGG - chr7_3:71858214-71858233 Msa1121720:intron 45.0%
CAGCTGGCTGATCACTATTT+AGG + chr7_3:71858251-71858270 None:intergenic 45.0%
CTCAAACTCTGATGTACCAC+TGG - chr7_3:71858369-71858388 Msa1121720:intron 45.0%
CAAACTCTGATGTACCACTG+GGG - chr7_3:71858371-71858390 Msa1121720:intron 45.0%
TATGGTTGCCCATGCTTTCT+TGG - chr7_3:71858726-71858745 Msa1121720:intron 45.0%
! ATGTCAGGCCAAGAAAGCAT+GGG + chr7_3:71858737-71858756 None:intergenic 45.0%
TATGTCAGGCCAAGAAAGCA+TGG + chr7_3:71858738-71858757 None:intergenic 45.0%
TAATGGTTATTGGCAGCCCT+TGG - chr7_3:71858763-71858782 Msa1121720:intron 45.0%
! ATTCCTAGCTCTTTGGCCAA+GGG + chr7_3:71858782-71858801 None:intergenic 45.0%
! AATTCCTAGCTCTTTGGCCA+AGG + chr7_3:71858783-71858802 None:intergenic 45.0%
GGCCAAAGAGCTAGGAATTA+AGG - chr7_3:71858784-71858803 Msa1121720:intron 45.0%
GCTAGAACGAACTGTGTCAA+TGG + chr7_3:71858891-71858910 None:intergenic 45.0%
TGCAATTGTAAGCTGCTGAG+TGG - chr7_3:71858983-71859002 Msa1121720:CDS 45.0%
TTAATGACGTCTAGCAACGG+AGG - chr7_3:71859254-71859273 Msa1121720:five_prime_UTR 45.0%
GCCATCCCAAAGTGTATTTC+TGG - chr7_3:71859328-71859347 Msa1121720:five_prime_UTR 45.0%
TGCGGTCGTTAATATGAGGG+TGG + chr7_3:71856069-71856088 None:intergenic 50.0%
!! TGAAATGACGGTGTTGCCCT+TGG + chr7_3:71856111-71856130 None:intergenic 50.0%
GATGTGAAGAGGAGGAAGAG+TGG + chr7_3:71856144-71856163 None:intergenic 50.0%
! TCTGAGATATGGTCGTGTGG+TGG + chr7_3:71856169-71856188 None:intergenic 50.0%
!! CTCTCTGAGATATGGTCGTG+TGG + chr7_3:71856172-71856191 None:intergenic 50.0%
TCTCCACATGCCAACACCAA+TGG - chr7_3:71856205-71856224 Msa1121720:three_prime_UTR 50.0%
ATCTCTGCACCTCCCCTAAA+TGG - chr7_3:71856234-71856253 Msa1121720:three_prime_UTR 50.0%
TGCACCTCCCCTAAATGGAT+TGG - chr7_3:71856239-71856258 Msa1121720:three_prime_UTR 50.0%
! GGTGGTGCCAATCCATTTAG+GGG + chr7_3:71856249-71856268 None:intergenic 50.0%
! CGGTGGTGCCAATCCATTTA+GGG + chr7_3:71856250-71856269 None:intergenic 50.0%
! ACGGTGGTGCCAATCCATTT+AGG + chr7_3:71856251-71856270 None:intergenic 50.0%
!! GAGGACGACGGTTTTATCAC+CGG + chr7_3:71856501-71856520 None:intergenic 50.0%
TCCTCGACATGTACACCCAA+TGG - chr7_3:71856516-71856535 Msa1121720:CDS 50.0%
ACCATTGGGTGTACATGTCG+AGG + chr7_3:71856520-71856539 None:intergenic 50.0%
GAAAACGGGGAGATAGAGAG+AGG + chr7_3:71857398-71857417 None:intergenic 50.0%
GCAAAGACCAATTCAAGGCG+TGG - chr7_3:71858022-71858041 Msa1121720:intron 50.0%
CTGATGACCACGCCTTGAAT+TGG + chr7_3:71858032-71858051 None:intergenic 50.0%
TAGTTGCTGCGCAATGTGTG+TGG - chr7_3:71858405-71858424 Msa1121720:intron 50.0%
AGTTGCTGCGCAATGTGTGT+GGG - chr7_3:71858406-71858425 Msa1121720:intron 50.0%
AAGCTGCTGAGTGGAAGATG+AGG - chr7_3:71858992-71859011 Msa1121720:CDS 50.0%
TCTCGCACCCAAGATCATTC+CGG - chr7_3:71859283-71859302 Msa1121720:five_prime_UTR 50.0%
TGTCCAGCCGGAATGATCTT+GGG + chr7_3:71859293-71859312 None:intergenic 50.0%
TTGTCCAGCCGGAATGATCT+TGG + chr7_3:71859294-71859313 None:intergenic 50.0%
ATTCCGGCTGGACAAAACAC+AGG - chr7_3:71859299-71859318 Msa1121720:five_prime_UTR 50.0%
! ACACCTGTGTTTTGTCCAGC+CGG + chr7_3:71859305-71859324 None:intergenic 50.0%
!! TGGTGGTGGATGTGAAGAGG+AGG + chr7_3:71856152-71856171 None:intergenic 55.0%
!! GTGTGGTGGTGGATGTGAAG+AGG + chr7_3:71856155-71856174 None:intergenic 55.0%
GAGATATGGTCGTGTGGTGG+TGG + chr7_3:71856166-71856185 None:intergenic 55.0%
!! GAGCCATTGGTGTTGGCATG+TGG + chr7_3:71856211-71856230 None:intergenic 55.0%
GGTGCCAATCCATTTAGGGG+AGG + chr7_3:71856246-71856265 None:intergenic 55.0%
ACTTGTCCAACCGTCACGGT+GGG + chr7_3:71856434-71856453 None:intergenic 55.0%
AACTTGTCCAACCGTCACGG+TGG + chr7_3:71856435-71856454 None:intergenic 55.0%
TCACCGGCGGCATTAACGAT+GGG + chr7_3:71856485-71856504 None:intergenic 55.0%
ATCACCGGCGGCATTAACGA+TGG + chr7_3:71856486-71856505 None:intergenic 55.0%
!! GACGACGGTTTTATCACCGG+CGG + chr7_3:71856498-71856517 None:intergenic 55.0%
GGTGTACATGTCGAGGACGA+CGG + chr7_3:71856513-71856532 None:intergenic 55.0%
AACTACTGGCCCCACCGTGA+CGG - chr7_3:71856421-71856440 Msa1121720:CDS 60.0%
CTTGTCCAACCGTCACGGTG+GGG + chr7_3:71856433-71856452 None:intergenic 60.0%
TGGCCCATCGTTAATGCCGC+CGG - chr7_3:71856479-71856498 Msa1121720:CDS 60.0%
CAAGGCGTGGTCATCAGCTG+AGG - chr7_3:71858035-71858054 Msa1121720:intron 60.0%
CTACTAGCGCTAGACCCCAG+TGG + chr7_3:71858388-71858407 None:intergenic 60.0%
CAGCCCTTGGCCAAAGAGCT+AGG - chr7_3:71858776-71858795 Msa1121720:intron 60.0%
GCACCCAAGATCATTCCGGC+TGG - chr7_3:71859287-71859306 Msa1121720:five_prime_UTR 60.0%
ACTGGCCCCACCGTGACGGT+TGG - chr7_3:71856425-71856444 Msa1121720:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71855951 71859377 71855951 ID=Msa1121720;Name=Msa1121720
chr7_3 mRNA 71855951 71859377 71855951 ID=Msa1121720-mRNA-1;Parent=Msa1121720;Name=Msa1121720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=261|1|1|1|1|1|3|464|186
chr7_3 exon 71855951 71856549 71855951 ID=Msa1121720-mRNA-1:exon:18509;Parent=Msa1121720-mRNA-1
chr7_3 exon 71856639 71856738 71856639 ID=Msa1121720-mRNA-1:exon:18508;Parent=Msa1121720-mRNA-1
chr7_3 exon 71858791 71859377 71858791 ID=Msa1121720-mRNA-1:exon:18507;Parent=Msa1121720-mRNA-1
chr7_3 five_prime_UTR 71859117 71859377 71859117 ID=Msa1121720-mRNA-1:five_prime_utr;Parent=Msa1121720-mRNA-1
chr7_3 CDS 71858791 71859116 71858791 ID=Msa1121720-mRNA-1:cds;Parent=Msa1121720-mRNA-1
chr7_3 CDS 71856639 71856738 71856639 ID=Msa1121720-mRNA-1:cds;Parent=Msa1121720-mRNA-1
chr7_3 CDS 71856415 71856549 71856415 ID=Msa1121720-mRNA-1:cds;Parent=Msa1121720-mRNA-1
chr7_3 three_prime_UTR 71855951 71856414 71855951 ID=Msa1121720-mRNA-1:three_prime_utr;Parent=Msa1121720-mRNA-1
Gene Sequence

>Msa1121720

ATGCCAACACCAATGGCTCTTAATCTCTGCACCTCCCCTAAATGGATTGGCACCACCGTCTTCGATAGTACTTCTTCATCGAAGCTATCACTTGGTTCTTCTTCTTCTACTACTTCATTTTCTTCTTCCATTTTGAATTCCAAGAGTGTTAATCTCAAGAGCTTAAGCTTGAGGAAGAGTGGGAGTTTCTGTGTAAGATCAAGCTTGGAAACTACTGGCCCCACCGTGACGGTTGGACAAGTTACTGAAGTTAACAAGGATACGTTCTGGCCCATCGTTAATGCCGCCGGTGATAAAACCGTCGTCCTCGACATGTACACCCAATGGTGTGGTCCTTGCAAAGTGATAGCTCCAAAATACAAAGAATTAGCTGAGAAGTATTTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGATAACAAGCCCTTGGCCAAAGAGCTAGGAATTAAGGTGGTTCCCACTTTTAAAATTCTGAAAGACAACAAGGTTGTAAAAGAAGTAACTGGAGCTAAATATGATGATTTGGTCTTTGCCATTGACACAGTTCGTTCTAGCTAA

Protein sequence

>Msa1121720

MPTPMALNLCTSPKWIGTTVFDSTSSSKLSLGSSSSTTSFSSSILNSKSVNLKSLSLRKSGSFCVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKYKELAEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKYDDLVFAIDTVRSS*