AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0112880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112880 MtrunA17_Chr1g0171581 92.952 227 2 2 1 213 1 227 1.10e-149 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112880 AT5G04440.1 72.021 193 41 1 34 213 63 255 7.16e-100 290
Msa0112880 AT5G04440.2 69.364 173 40 1 34 193 63 235 2.11e-83 248
Msa0112880 AT4G31115.1 27.273 187 111 5 34 198 54 237 3.90e-16 75.1
Msa0112880 AT4G31115.2 27.273 187 111 5 34 198 78 261 7.32e-16 74.7

Find 76 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGGTTTGGTTTGTTT+TGG 0.247513 1_3:+28477091 Msa0112880:five_prime_UTR
ACAAGAGAAGGTCGAGGAAT+TGG 0.294857 1_3:+28477182 Msa0112880:five_prime_UTR
GCTGATTCAATTGCTTGCTT+TGG 0.335311 1_3:-28478442 None:intergenic
TCAGATTACATAACCATAAC+TGG 0.343782 1_3:-28481950 None:intergenic
AACACTGAATATTGACTTGC+TGG 0.347727 1_3:-28477473 None:intergenic
AACAAACCTGTGACATAAAA+CGG 0.350906 1_3:-28478507 None:intergenic
GAGTACTCCCACCTCAATTA+TGG 0.356989 1_3:-28478303 None:intergenic
GATTATCAAGCCTGGGCCTC+TGG 0.362325 1_3:+28481673 Msa0112880:CDS
TGATTATGATATTCCAGTTA+TGG 0.362872 1_3:+28481937 Msa0112880:three_prime_UTR
CAAGAAGTGGAAGGCGTTGT+TGG 0.383157 1_3:-28477265 None:intergenic
AAAGTAGGTACCTACCTTGC+AGG 0.389681 1_3:-28477639 None:intergenic
TGTGTGCATGGATTAATTAT+TGG 0.391776 1_3:+28481820 Msa0112880:three_prime_UTR
ACAAACCTGTGACATAAAAC+GGG 0.400266 1_3:-28478506 None:intergenic
TCAACTTTGACAAGCAAAAC+AGG 0.418135 1_3:-28477581 None:intergenic
AATTGGGATGGCTTCGTCAT+TGG 0.418577 1_3:+28477199 Msa0112880:exon
GAGTTGATGACAACGTGAAA+TGG 0.422343 1_3:-28477243 None:intergenic
CAAGAGAAGGTCGAGGAATT+GGG 0.424177 1_3:+28477183 Msa0112880:five_prime_UTR
GAGCTTAATGCAACAGCCAT+TGG 0.425284 1_3:-28477612 None:intergenic
ATGTGGTGATGCAGCTATAA+TGG 0.425880 1_3:+28478217 Msa0112880:intron
TTTCTTACATTACAGCTTCA+GGG 0.426577 1_3:+28477712 Msa0112880:intron
AATTTGTAGTTGAATATATG+AGG 0.428648 1_3:+28477447 Msa0112880:intron
TGGTTTGTCAAAACATGGTT+TGG 0.429119 1_3:+28477081 None:intergenic
TAATCTTGAGTATTTGTTCA+AGG 0.430233 1_3:-28478477 None:intergenic
TGAGGCATTTCCAGAGGCCC+AGG 0.437530 1_3:-28481683 None:intergenic
AAGCAAGCAATTGAATCAGC+TGG 0.447176 1_3:+28478445 Msa0112880:CDS
TGTCTTGGCTTGTGTGTGGA+TGG 0.447815 1_3:-28477157 None:intergenic
AGTCACTTTCACACGATATC+CGG 0.455952 1_3:-28478244 None:intergenic
AGCAACGAAACGGGCTTTGT+GGG 0.456712 1_3:-28477309 None:intergenic
AACCGTGGTTGCACTGGTGC+TGG 0.461802 1_3:+28481746 Msa0112880:three_prime_UTR
ATGCCTCAAGGCAACCTCTT+GGG 0.464009 1_3:+28481698 Msa0112880:CDS
AGCTTAATGCAACAGCCATT+GGG 0.464658 1_3:-28477611 None:intergenic
GAGCAACGAAACGGGCTTTG+TGG 0.479564 1_3:-28477310 None:intergenic
CTTACGGCGAGCAACGAAAC+GGG 0.479910 1_3:-28477318 None:intergenic
AATGCCTCAAGGCAACCTCT+TGG 0.493109 1_3:+28481697 Msa0112880:CDS
CTCTGTACATTGGTGATAGT+TGG 0.495607 1_3:+28482009 Msa0112880:three_prime_UTR
TTGTGAAAGATTATCAAGCC+TGG 0.500950 1_3:+28481665 Msa0112880:CDS
TGAAATGGGTTGAACAAGAA+TGG 0.501639 1_3:-28477228 None:intergenic
CCGTTTCGTTGCTCGCCGTA+AGG 0.506017 1_3:+28477319 Msa0112880:CDS
GAACAGAAACAGACTCCTTA+CGG 0.507973 1_3:-28477334 None:intergenic
ATGCAGCTATAATGGTGAAC+CGG 0.509410 1_3:+28478225 Msa0112880:intron
TAGGACAAATCGATAGCGTA+AGG 0.510309 1_3:+28481882 Msa0112880:three_prime_UTR
GGTATTGCTTTGAAAGCGAA+AGG 0.511262 1_3:-28478421 None:intergenic
CCTTACGGCGAGCAACGAAA+CGG 0.521735 1_3:-28477319 None:intergenic
ATAAGTAACCGTGGTTGCAC+TGG 0.523590 1_3:+28481740 Msa0112880:three_prime_UTR
TCAAGGCAACCTCTTGGGAC+AGG 0.526109 1_3:+28481703 Msa0112880:CDS
ATTCAGTGTTGGACGCTGAA+AGG 0.542698 1_3:+28477486 Msa0112880:CDS
TGCTGCTTGTAGTGTGTGCA+TGG 0.548904 1_3:+28481808 Msa0112880:three_prime_UTR
GGCTTGTGTGTGGATGGATG+TGG 0.549161 1_3:-28477151 None:intergenic
AGTTGATGACAACGTGAAAT+GGG 0.550183 1_3:-28477242 None:intergenic
TTGCCTTGAGGCATTTCCAG+AGG 0.558238 1_3:-28481689 None:intergenic
AGCAAGCAATTGAATCAGCT+GGG 0.564610 1_3:+28478446 Msa0112880:CDS
ACTACTTACTTAGGGGACGT+TGG 0.565216 1_3:-28477364 None:intergenic
GGGCCTCTGGAAATGCCTCA+AGG 0.565504 1_3:+28481686 Msa0112880:CDS
CACATCAGACACCATAATTG+AGG 0.567823 1_3:+28478292 Msa0112880:CDS
TGTGAAAGATTATCAAGCCT+GGG 0.569096 1_3:+28481666 Msa0112880:CDS
CATTAAGCTCTTATCCTGCA+AGG 0.575460 1_3:+28477625 Msa0112880:CDS
AGCCAAGACAAAACAAGAGA+AGG 0.578775 1_3:+28477170 Msa0112880:five_prime_UTR
CAGATTTCACCTGTCCCAAG+AGG 0.585810 1_3:-28481712 None:intergenic
AAACGGGCTTTGTGGGTCGA+AGG 0.589377 1_3:-28477302 None:intergenic
AGGACAAATCGATAGCGTAA+GGG 0.589690 1_3:+28481883 Msa0112880:three_prime_UTR
GGACAAATCGATAGCGTAAG+GGG 0.590710 1_3:+28481884 Msa0112880:three_prime_UTR
GGAGTTGCTGAAGCAAGAAG+TGG 0.592610 1_3:-28477278 None:intergenic
GATTCACAAACTCTGTACAT+TGG 0.593215 1_3:+28481999 Msa0112880:three_prime_UTR
CGGGCTTTGTGGGTCGAAGG+AGG 0.597317 1_3:-28477299 None:intergenic
AGCAAGTCAATATTCAGTGT+TGG 0.598943 1_3:+28477475 Msa0112880:CDS
AAGTGACTCAGATAAGTCAC+TGG 0.624597 1_3:+28478259 Msa0112880:CDS
AGCCAGCACCAGTGCAACCA+CGG 0.629709 1_3:-28481748 None:intergenic
GACAAAACAAGAGAAGGTCG+AGG 0.640385 1_3:+28477176 Msa0112880:five_prime_UTR
AGAAGGTCGAGGAATTGGGA+TGG 0.662357 1_3:+28477187 Msa0112880:exon
TTGCTGAAGCAAGAAGTGGA+AGG 0.666859 1_3:-28477274 None:intergenic
AAAGTTGAACAACAACCCAA+TGG 0.669566 1_3:+28477596 Msa0112880:CDS
TCTGAAATAATAAGTAACCG+TGG 0.682131 1_3:+28481731 Msa0112880:exon
CAAACCTGTGACATAAAACG+GGG 0.689169 1_3:-28478505 None:intergenic
GACAAATCGATAGCGTAAGG+GGG 0.689226 1_3:+28481885 Msa0112880:three_prime_UTR
TGTCCCAAGAGGTTGCCTTG+AGG 0.701420 1_3:-28481701 None:intergenic
AAGGATTGAACGTGTGAGTG+AGG 0.702772 1_3:+28477505 Msa0112880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATACAATTTTTTGTA+TGG - chr1_3:28480149-28480168 None:intergenic 10.0%
!! AAAATAAAAATCAGAAGAAA+AGG - chr1_3:28478340-28478359 None:intergenic 15.0%
!!! AAGTACATGATATTTTAAAT+GGG - chr1_3:28479290-28479309 None:intergenic 15.0%
!!! AAAGTACATGATATTTTAAA+TGG - chr1_3:28479291-28479310 None:intergenic 15.0%
!!! TCAAATTTTTATACATATAC+TGG - chr1_3:28479596-28479615 None:intergenic 15.0%
!! AATTATCTAAAAGTTATACA+TGG + chr1_3:28480107-28480126 Msa0112880:intron 15.0%
!! TCTCTAGTAATAAATTATTA+TGG - chr1_3:28480993-28481012 None:intergenic 15.0%
!! AATAATTTATTACTAGAGAT+AGG + chr1_3:28480994-28481013 Msa0112880:intron 15.0%
!!! TTTGAAAATTTTATGACAAT+TGG - chr1_3:28481054-28481073 None:intergenic 15.0%
!!! TTTTTTCTATATAAAATCCA+AGG - chr1_3:28481090-28481109 None:intergenic 15.0%
!!! TTTTAATAATAAGTTTTCCT+AGG - chr1_3:28481117-28481136 None:intergenic 15.0%
!! AATTTGTAGTTGAATATATG+AGG + chr1_3:28477447-28477466 Msa0112880:intron 20.0%
!!! AATTAAGTTTTTCACATTTG+AGG + chr1_3:28477553-28477572 Msa0112880:CDS 20.0%
!! GATTTAATGATAAGTAAAGT+AGG - chr1_3:28477657-28477676 None:intergenic 20.0%
!! AGAAAACAAGAAATAAGAAA+GGG - chr1_3:28477697-28477716 None:intergenic 20.0%
!! AAGAAAACAAGAAATAAGAA+AGG - chr1_3:28477698-28477717 None:intergenic 20.0%
!! ATAAAGACTTTCATCAAATT+CGG + chr1_3:28478870-28478889 Msa0112880:intron 20.0%
!! TTAACATAAGACCAAAAAAA+GGG + chr1_3:28479094-28479113 Msa0112880:intron 20.0%
!!! AGTACATGATATTTTAAATG+GGG - chr1_3:28479289-28479308 None:intergenic 20.0%
!!! TAACTATCTTACTTTTAAAG+AGG - chr1_3:28479380-28479399 None:intergenic 20.0%
!!! TTTATGCTGATTATATTTCA+TGG - chr1_3:28479485-28479504 None:intergenic 20.0%
!!! ATTTATCAATCTTTTGTAGT+TGG - chr1_3:28479552-28479571 None:intergenic 20.0%
!! CTAATGGTTTAAACTTTAAA+TGG + chr1_3:28479864-28479883 Msa0112880:intron 20.0%
!! TGTATAATAACTGATAAAAC+AGG + chr1_3:28480159-28480178 Msa0112880:intron 20.0%
!! ATCAACAAAATTATGTACAT+TGG - chr1_3:28480212-28480231 None:intergenic 20.0%
!!! GATTATGTTATTTTAAAGGT+TGG - chr1_3:28480567-28480586 None:intergenic 20.0%
!!! ACCTTTAAAATAACATAATC+TGG + chr1_3:28480567-28480586 Msa0112880:intron 20.0%
!!! CCTTTAAAATAACATAATCT+GGG + chr1_3:28480568-28480587 Msa0112880:intron 20.0%
!!! AAATTTTGAGTATTTGTTCA+AGG - chr1_3:28480699-28480718 None:intergenic 20.0%
!! TGAACAAATACTCAAAATTT+AGG + chr1_3:28480699-28480718 Msa0112880:intron 20.0%
!! TTATATACAGTCCATATAAA+AGG - chr1_3:28480841-28480860 None:intergenic 20.0%
!!! TATTATGGATTTCACATTTT+AGG - chr1_3:28480978-28480997 None:intergenic 20.0%
!! TATATAGAAAAAATCATCCT+AGG + chr1_3:28481097-28481116 Msa0112880:intron 20.0%
!! TAAAAGACCAATGAAATAAA+AGG - chr1_3:28481483-28481502 None:intergenic 20.0%
!!! TGAAGTTTTGTACTAATTTT+AGG + chr1_3:28481589-28481608 Msa0112880:intron 20.0%
!!! TAGTTTTTTCTGATTCTTTT+AGG + chr1_3:28481863-28481882 Msa0112880:three_prime_UTR 20.0%
! TGAATGATACTACTTACTTA+GGG - chr1_3:28477375-28477394 None:intergenic 25.0%
! TTGAATGATACTACTTACTT+AGG - chr1_3:28477376-28477395 None:intergenic 25.0%
! AAGGGTGAAAAAGAAAATAT+GGG - chr1_3:28477679-28477698 None:intergenic 25.0%
! AAAGGGTGAAAAAGAAAATA+TGG - chr1_3:28477680-28477699 None:intergenic 25.0%
! ACGGTGATTTCAAAATTATA+TGG + chr1_3:28478061-28478080 Msa0112880:intron 25.0%
! GTCATTTCAATACTTTAATG+TGG + chr1_3:28478200-28478219 Msa0112880:intron 25.0%
! TAATCTTGAGTATTTGTTCA+AGG - chr1_3:28478480-28478499 None:intergenic 25.0%
!! ATTTTTGTATGAAAGTTGTG+AGG + chr1_3:28478575-28478594 Msa0112880:intron 25.0%
!! TTTTTGTATGAAAGTTGTGA+GGG + chr1_3:28478576-28478595 Msa0112880:intron 25.0%
!! GGTTCTTATTTCTCTAAATT+TGG - chr1_3:28478629-28478648 None:intergenic 25.0%
! AATCTCTATGCATGAATATA+GGG - chr1_3:28478650-28478669 None:intergenic 25.0%
! TAATCTCTATGCATGAATAT+AGG - chr1_3:28478651-28478670 None:intergenic 25.0%
! TAGAGATTAACATGAGTAAA+TGG + chr1_3:28478662-28478681 Msa0112880:intron 25.0%
! CTATAAATTGTTCTGTTCTT+TGG - chr1_3:28478767-28478786 None:intergenic 25.0%
! AGAACAGAACAATTTATAGA+AGG + chr1_3:28478768-28478787 Msa0112880:intron 25.0%
! GAACAGAACAATTTATAGAA+GGG + chr1_3:28478769-28478788 Msa0112880:intron 25.0%
!!! CTTTTTTTGGTCTTATGTTA+AGG - chr1_3:28479095-28479114 None:intergenic 25.0%
! CTTAACATAAGACCAAAAAA+AGG + chr1_3:28479093-28479112 Msa0112880:intron 25.0%
!! CTTTGATTAATTGTGTGTTT+TGG - chr1_3:28479236-28479255 None:intergenic 25.0%
! CTGATTATATTTCATGGATA+TGG - chr1_3:28479479-28479498 None:intergenic 25.0%
! ATAAATGTGTTTATGTGTCA+AGG + chr1_3:28479500-28479519 Msa0112880:intron 25.0%
! TGTACTACATTCTAATCTAA+TGG + chr1_3:28479848-28479867 Msa0112880:intron 25.0%
! ACAATAAAGACTGTCATATT+TGG - chr1_3:28479891-28479910 None:intergenic 25.0%
! AAGTAATGACTTCATAGATA+TGG - chr1_3:28479914-28479933 None:intergenic 25.0%
!! CACAGATACGTATATAATTT+TGG + chr1_3:28479990-28480009 Msa0112880:intron 25.0%
! AAACAGGATTACTCTATAAA+TGG + chr1_3:28480175-28480194 Msa0112880:intron 25.0%
! TTATGTAGGATAAATAGCTT+TGG - chr1_3:28480250-28480269 None:intergenic 25.0%
! CATCAACATAATTTATAGTG+AGG - chr1_3:28480323-28480342 None:intergenic 25.0%
!!! TAAGTTTTATTGTTCTTTCC+AGG - chr1_3:28480422-28480441 None:intergenic 25.0%
!!! CCCAGATTATGTTATTTTAA+AGG - chr1_3:28480571-28480590 None:intergenic 25.0%
! AGTTTAAAAGTCACATTTCT+TGG + chr1_3:28480804-28480823 Msa0112880:intron 25.0%
! GTTTAAAAGTCACATTTCTT+GGG + chr1_3:28480805-28480824 Msa0112880:intron 25.0%
! CAAATACTCTATAATATCCT+TGG + chr1_3:28481070-28481089 Msa0112880:intron 25.0%
! AAACATTGCAACATGTAATA+TGG - chr1_3:28481152-28481171 None:intergenic 25.0%
! CTGTTTATTAGGTAAATGTA+TGG + chr1_3:28481322-28481341 Msa0112880:intron 25.0%
! TGATTATGATATTCCAGTTA+TGG + chr1_3:28481937-28481956 Msa0112880:three_prime_UTR 25.0%
!!! AAACATGGTTTGGTTTGTTT+TGG + chr1_3:28477091-28477110 Msa0112880:five_prime_UTR 30.0%
GAATGATACTACTTACTTAG+GGG - chr1_3:28477374-28477393 None:intergenic 30.0%
! TTTTCTTACATTACAGCTTC+AGG + chr1_3:28477711-28477730 Msa0112880:intron 30.0%
TTTCTTACATTACAGCTTCA+GGG + chr1_3:28477712-28477731 Msa0112880:intron 30.0%
! TCTTGTTACTTATCGAATCT+CGG + chr1_3:28477797-28477816 Msa0112880:intron 30.0%
! GATGACTTGTATTATAAAGC+TGG + chr1_3:28477841-28477860 Msa0112880:intron 30.0%
TACAAAAAGGGTAGATGAAA+TGG + chr1_3:28477975-28477994 Msa0112880:intron 30.0%
AGTAAATGTGAATGTAGCTA+AGG + chr1_3:28478032-28478051 Msa0112880:intron 30.0%
AAGGGAAAAAGGAAATTTGT+AGG + chr1_3:28478139-28478158 Msa0112880:intron 30.0%
!! ATTTGATTCATGCTACTTTC+AGG + chr1_3:28478174-28478193 Msa0112880:intron 30.0%
AACAAACCTGTGACATAAAA+CGG - chr1_3:28478510-28478529 None:intergenic 30.0%
TAGTACAATGATGAGTACAA+AGG + chr1_3:28478709-28478728 Msa0112880:intron 30.0%
AGTACAAAGGAACAAATGAT+TGG + chr1_3:28478722-28478741 Msa0112880:intron 30.0%
GTACAAAGGAACAAATGATT+GGG + chr1_3:28478723-28478742 Msa0112880:intron 30.0%
TGGTATATAATAGCAGTGTA+AGG - chr1_3:28478912-28478931 None:intergenic 30.0%
GTTAGTTGTAACAAAGAGAT+TGG - chr1_3:28478977-28478996 None:intergenic 30.0%
TACAACTAACTTTCATGATG+TGG + chr1_3:28478987-28479006 Msa0112880:intron 30.0%
TGACGAAGAACAAATTACAA+AGG + chr1_3:28479048-28479067 Msa0112880:intron 30.0%
GACGAAGAACAAATTACAAA+GGG + chr1_3:28479049-28479068 Msa0112880:intron 30.0%
AACAAATTACAAAGGGATAG+AGG + chr1_3:28479056-28479075 Msa0112880:intron 30.0%
!!! TTTTTGGTCTTATGTTAAGG+AGG - chr1_3:28479092-28479111 None:intergenic 30.0%
! GAGCTTTAGTGTATAAAAGA+GGG - chr1_3:28479198-28479217 None:intergenic 30.0%
!!! TGTTTTGGTCTTATGTTAAG+GGG - chr1_3:28479221-28479240 None:intergenic 30.0%
!!! GTGTTTTGGTCTTATGTTAA+GGG - chr1_3:28479222-28479241 None:intergenic 30.0%
!!! TGTGTTTTGGTCTTATGTTA+AGG - chr1_3:28479223-28479242 None:intergenic 30.0%
AAACAGATATCTCAAGGATT+AGG - chr1_3:28479262-28479281 None:intergenic 30.0%
TAATCCTTGAGATATCTGTT+TGG + chr1_3:28479261-28479280 Msa0112880:intron 30.0%
!!! TCTCACTTTTGGCTTATATT+TGG - chr1_3:28479317-28479336 None:intergenic 30.0%
! GTTGGAGTAAAAGTTGATTT+GGG - chr1_3:28479353-28479372 None:intergenic 30.0%
! TGTTGGAGTAAAAGTTGATT+TGG - chr1_3:28479354-28479373 None:intergenic 30.0%
!! TACTTTTAAAGAGGTCTTGT+TGG - chr1_3:28479371-28479390 None:intergenic 30.0%
ATGGATATGGTTGAGTAAAT+AGG - chr1_3:28479466-28479485 None:intergenic 30.0%
TTTGAATGTTTACACACATG+AGG + chr1_3:28479611-28479630 Msa0112880:intron 30.0%
TTGAATGTTTACACACATGA+GGG + chr1_3:28479612-28479631 Msa0112880:intron 30.0%
GAAGAAAAAGATAGTCCTAT+AGG - chr1_3:28479825-28479844 None:intergenic 30.0%
ACATGATGACTTTATGAGAT+AGG - chr1_3:28480300-28480319 None:intergenic 30.0%
!!! TTTTCAGGTTTAACATGTCA+TGG - chr1_3:28480488-28480507 None:intergenic 30.0%
! TTAAACCTGAAAAGTTTTGC+AGG + chr1_3:28480495-28480514 Msa0112880:intron 30.0%
! TAAACCTGAAAAGTTTTGCA+GGG + chr1_3:28480496-28480515 Msa0112880:intron 30.0%
! GAGAAATCAGTCCTTTTATA+TGG + chr1_3:28480827-28480846 Msa0112880:intron 30.0%
GACTGTATATAAATTGCGTA+GGG + chr1_3:28480849-28480868 Msa0112880:intron 30.0%
TATTACTAGAGATAGGTGTT+TGG + chr1_3:28481001-28481020 Msa0112880:intron 30.0%
TGCAACATGTAATATGGTAT+TGG - chr1_3:28481146-28481165 None:intergenic 30.0%
AAATTTGTAACAAACTGTCC+AGG + chr1_3:28481235-28481254 Msa0112880:intron 30.0%
!! GAGTTCACCTTTTATTTCAT+TGG + chr1_3:28481473-28481492 Msa0112880:intron 30.0%
! TCTGAAATAATAAGTAACCG+TGG + chr1_3:28481731-28481750 Msa0112880:exon 30.0%
! TGTGTGCATGGATTAATTAT+TGG + chr1_3:28481820-28481839 Msa0112880:three_prime_UTR 30.0%
TCAGATTACATAACCATAAC+TGG - chr1_3:28481953-28481972 None:intergenic 30.0%
!!! TGGTTTGGTTTGTTTTGGAA+CGG + chr1_3:28477096-28477115 Msa0112880:five_prime_UTR 35.0%
!! TGAAATGGGTTGAACAAGAA+TGG - chr1_3:28477231-28477250 None:intergenic 35.0%
!! AGTTGATGACAACGTGAAAT+GGG - chr1_3:28477245-28477264 None:intergenic 35.0%
!! AACACTGAATATTGACTTGC+TGG - chr1_3:28477476-28477495 None:intergenic 35.0%
AGCAAGTCAATATTCAGTGT+TGG + chr1_3:28477475-28477494 Msa0112880:CDS 35.0%
TCAACTTTGACAAGCAAAAC+AGG - chr1_3:28477584-28477603 None:intergenic 35.0%
AAAGTTGAACAACAACCCAA+TGG + chr1_3:28477596-28477615 Msa0112880:CDS 35.0%
TCAAGGAAAACATGCAGTAA+GGG - chr1_3:28477918-28477937 None:intergenic 35.0%
! CATGTTTTCCTTGACTGTTA+CGG + chr1_3:28477924-28477943 Msa0112880:intron 35.0%
AATGTGAATGTAGCTAAGGA+TGG + chr1_3:28478036-28478055 Msa0112880:intron 35.0%
AATGTAGCTAAGGATGGTTA+CGG + chr1_3:28478042-28478061 Msa0112880:intron 35.0%
TACTTCTTGAGTAAACATGG+AGG - chr1_3:28478090-28478109 None:intergenic 35.0%
CTCTACTTCTTGAGTAAACA+TGG - chr1_3:28478093-28478112 None:intergenic 35.0%
CATGTTTACTCAAGAAGTAG+AGG + chr1_3:28478091-28478110 Msa0112880:intron 35.0%
! CTTTTTCCCTTTCTCAGAAA+GGG - chr1_3:28478130-28478149 None:intergenic 35.0%
ACAAACCTGTGACATAAAAC+GGG - chr1_3:28478509-28478528 None:intergenic 35.0%
! TTGTGAGGGTTTGGATTTTT+GGG + chr1_3:28478590-28478609 Msa0112880:intron 35.0%
CTCATCATTGTACTAGTGAA+AGG - chr1_3:28478704-28478723 None:intergenic 35.0%
!! TGGAATGACTTTTTCCTCTT+AGG - chr1_3:28478830-28478849 None:intergenic 35.0%
! AAGTCTTTATTTCCTCCCTT+TGG - chr1_3:28478860-28478879 None:intergenic 35.0%
ACAAAGAGATTGGAATCACA+TGG - chr1_3:28478967-28478986 None:intergenic 35.0%
TTAGTGTATAAAAGAGGGCA+AGG - chr1_3:28479193-28479212 None:intergenic 35.0%
! GGAGCTTTAGTGTATAAAAG+AGG - chr1_3:28479199-28479218 None:intergenic 35.0%
!!! GTTTTGGTCTTATGTTAAGG+GGG - chr1_3:28479220-28479239 None:intergenic 35.0%
! TTTGTAGTTGGCAATTTTGC+TGG - chr1_3:28479540-28479559 None:intergenic 35.0%
! GGTCAGTATTTTATGTTCCA+GGG - chr1_3:28479950-28479969 None:intergenic 35.0%
! TGGTCAGTATTTTATGTTCC+AGG - chr1_3:28479951-28479970 None:intergenic 35.0%
GGAACATAAAATACTGACCA+AGG + chr1_3:28479951-28479970 Msa0112880:intron 35.0%
GATTGAAACGAAATCAACCT+TGG - chr1_3:28479971-28479990 None:intergenic 35.0%
!!! ATTTTAGCTGCAATCGTGAT+AGG + chr1_3:28480057-28480076 Msa0112880:intron 35.0%
AGGTGAAGTCAGATTTATGT+AGG - chr1_3:28480264-28480283 None:intergenic 35.0%
ACTAGTAGAAAGATTCAGCT+GGG + chr1_3:28480665-28480684 Msa0112880:intron 35.0%
! GTCAGCTTTTACACAAATAC+TGG + chr1_3:28480747-28480766 Msa0112880:intron 35.0%
GGACTGTATATAAATTGCGT+AGG + chr1_3:28480848-28480867 Msa0112880:intron 35.0%
ACTCTTATCTAGATCATGAG+AGG + chr1_3:28481204-28481223 Msa0112880:intron 35.0%
TTATCTAGATCATGAGAGGA+TGG + chr1_3:28481208-28481227 Msa0112880:intron 35.0%
TATCTAGATCATGAGAGGAT+GGG + chr1_3:28481209-28481228 Msa0112880:intron 35.0%
GAATATGTGAGGGTTAATAG+TGG + chr1_3:28481278-28481297 Msa0112880:intron 35.0%
CTATTGTAGAACCATAACTC+TGG - chr1_3:28481556-28481575 None:intergenic 35.0%
TTGTGAAAGATTATCAAGCC+TGG + chr1_3:28481665-28481684 Msa0112880:CDS 35.0%
TGTGAAAGATTATCAAGCCT+GGG + chr1_3:28481666-28481685 Msa0112880:CDS 35.0%
GATTCACAAACTCTGTACAT+TGG + chr1_3:28481999-28482018 Msa0112880:three_prime_UTR 35.0%
!!! TTGGTTTGTTTTGGAACGGA+TGG + chr1_3:28477100-28477119 Msa0112880:five_prime_UTR 40.0%
AGCCAAGACAAAACAAGAGA+AGG + chr1_3:28477170-28477189 Msa0112880:five_prime_UTR 40.0%
!!! GACCTTCTCTTGTTTTGTCT+TGG - chr1_3:28477175-28477194 None:intergenic 40.0%
!! GAGTTGATGACAACGTGAAA+TGG - chr1_3:28477246-28477265 None:intergenic 40.0%
GAACAGAAACAGACTCCTTA+CGG - chr1_3:28477337-28477356 None:intergenic 40.0%
AGCTTAATGCAACAGCCATT+GGG - chr1_3:28477614-28477633 None:intergenic 40.0%
CATTAAGCTCTTATCCTGCA+AGG + chr1_3:28477625-28477644 Msa0112880:CDS 40.0%
ATCGAATCTCGGTCATTAGT+TGG + chr1_3:28477808-28477827 Msa0112880:intron 40.0%
AGATCAGACAACTCGTATCA+TGG - chr1_3:28477877-28477896 None:intergenic 40.0%
GTCAAGGAAAACATGCAGTA+AGG - chr1_3:28477919-28477938 None:intergenic 40.0%
! TGTATCGCGAGTCTACATTT+TGG - chr1_3:28477959-28477978 None:intergenic 40.0%
TGTAGACTCGCGATACAAAA+AGG + chr1_3:28477962-28477981 Msa0112880:intron 40.0%
GTAGACTCGCGATACAAAAA+GGG + chr1_3:28477963-28477982 Msa0112880:intron 40.0%
! CCTTTTTCCCTTTCTCAGAA+AGG - chr1_3:28478131-28478150 None:intergenic 40.0%
! CCTTTCTGAGAAAGGGAAAA+AGG + chr1_3:28478128-28478147 Msa0112880:intron 40.0%
! ATGTGGTGATGCAGCTATAA+TGG + chr1_3:28478217-28478236 Msa0112880:intron 40.0%
ATGCAGCTATAATGGTGAAC+CGG + chr1_3:28478225-28478244 Msa0112880:intron 40.0%
! AGTCACTTTCACACGATATC+CGG - chr1_3:28478247-28478266 None:intergenic 40.0%
AAGTGACTCAGATAAGTCAC+TGG + chr1_3:28478259-28478278 Msa0112880:CDS 40.0%
CACATCAGACACCATAATTG+AGG + chr1_3:28478292-28478311 Msa0112880:CDS 40.0%
ATCAGACACCATAATTGAGG+TGG + chr1_3:28478295-28478314 Msa0112880:intron 40.0%
TCAGACACCATAATTGAGGT+GGG + chr1_3:28478296-28478315 Msa0112880:intron 40.0%
TGCATTGCTATGTCGAATTC+AGG + chr1_3:28478384-28478403 Msa0112880:intron 40.0%
!! GGTATTGCTTTGAAAGCGAA+AGG - chr1_3:28478424-28478443 None:intergenic 40.0%
! GCTGATTCAATTGCTTGCTT+TGG - chr1_3:28478445-28478464 None:intergenic 40.0%
AAGCAAGCAATTGAATCAGC+TGG + chr1_3:28478445-28478464 Msa0112880:CDS 40.0%
AGCAAGCAATTGAATCAGCT+GGG + chr1_3:28478446-28478465 Msa0112880:CDS 40.0%
CAAACCTGTGACATAAAACG+GGG - chr1_3:28478508-28478527 None:intergenic 40.0%
GTATGAAAGTTGTGAGGGTT+TGG + chr1_3:28478581-28478600 Msa0112880:intron 40.0%
! GTTGTGAGGGTTTGGATTTT+TGG + chr1_3:28478589-28478608 Msa0112880:intron 40.0%
GATCTTTGTACAAGCCTAAG+AGG + chr1_3:28478813-28478832 Msa0112880:intron 40.0%
TCATTCCAAACAGTGCCAAA+GGG + chr1_3:28478842-28478861 Msa0112880:intron 40.0%
GCAGTGTAAGGAATGAGAAA+GGG - chr1_3:28478900-28478919 None:intergenic 40.0%
AGCAGTGTAAGGAATGAGAA+AGG - chr1_3:28478901-28478920 None:intergenic 40.0%
TTGGAATCACATGGAATGAG+AGG - chr1_3:28478958-28478977 None:intergenic 40.0%
CAGATATCTCAAGGATTAGG+TGG - chr1_3:28479259-28479278 None:intergenic 40.0%
! AAGACTAAGCGTCTCACTTT+TGG - chr1_3:28479328-28479347 None:intergenic 40.0%
CAACTGGCATTCTAACCTAT+AGG + chr1_3:28479807-28479826 Msa0112880:intron 40.0%
AGATAGGATACGTTGTCTGA+AGG - chr1_3:28480284-28480303 None:intergenic 40.0%
TGGATAGGGATATGATGACT+TGG - chr1_3:28480357-28480376 None:intergenic 40.0%
GATATTGCATCTGCTACTCA+TGG - chr1_3:28480377-28480396 None:intergenic 40.0%
TATTCATGTCATCCTCTGGA+AGG + chr1_3:28480449-28480468 Msa0112880:intron 40.0%
GGAGATAAATATCCTTCCAG+AGG - chr1_3:28480464-28480483 None:intergenic 40.0%
TCAGGTTTAACATGTCATGG+TGG - chr1_3:28480485-28480504 None:intergenic 40.0%
! CTGAAAAGTTTTGCAGGGAA+GGG + chr1_3:28480501-28480520 Msa0112880:intron 40.0%
!!! GGTTGGCAGTGTTTTGTTTA+AGG - chr1_3:28480550-28480569 None:intergenic 40.0%
AGAGATGCTTCATAGAAGCT+AGG - chr1_3:28480612-28480631 None:intergenic 40.0%
GACTAGTAGAAAGATTCAGC+TGG + chr1_3:28480664-28480683 Msa0112880:intron 40.0%
TACTGGAATGAACGAAAGAG+TGG + chr1_3:28480764-28480783 Msa0112880:intron 40.0%
ACTGGAATGAACGAAAGAGT+GGG + chr1_3:28480765-28480784 Msa0112880:intron 40.0%
TACTAGAGATAGGTGTTTGG+TGG + chr1_3:28481004-28481023 Msa0112880:intron 40.0%
ATTGGCATTATCGCAGATGA+TGG - chr1_3:28481036-28481055 None:intergenic 40.0%
ATCTAGATCATGAGAGGATG+GGG + chr1_3:28481210-28481229 Msa0112880:intron 40.0%
TTTGTAACAAACTGTCCAGG+TGG + chr1_3:28481238-28481257 Msa0112880:intron 40.0%
AGTAAGCATGGGAATATGTG+AGG + chr1_3:28481267-28481286 Msa0112880:intron 40.0%
GTAAGCATGGGAATATGTGA+GGG + chr1_3:28481268-28481287 Msa0112880:intron 40.0%
! ATGTGAGGGTTAATAGTGGA+AGG + chr1_3:28481282-28481301 Msa0112880:intron 40.0%
! TGTGAGGGTTAATAGTGGAA+GGG + chr1_3:28481283-28481302 Msa0112880:intron 40.0%
! ATAGTGGAAGGGAATTGAGA+AGG + chr1_3:28481294-28481313 Msa0112880:intron 40.0%
TAGTGGAAGGGAATTGAGAA+GGG + chr1_3:28481295-28481314 Msa0112880:intron 40.0%
AGAAGGGTAGGCTGTTTATT+AGG + chr1_3:28481311-28481330 Msa0112880:intron 40.0%
GGTAAATGTATGGAGCCATT+TGG + chr1_3:28481332-28481351 Msa0112880:intron 40.0%
! ATACTTGCTGACTACAGTAG+CGG + chr1_3:28481527-28481546 Msa0112880:intron 40.0%
TAGGACAAATCGATAGCGTA+AGG + chr1_3:28481882-28481901 Msa0112880:three_prime_UTR 40.0%
AGGACAAATCGATAGCGTAA+GGG + chr1_3:28481883-28481902 Msa0112880:three_prime_UTR 40.0%
! CTCTGTACATTGGTGATAGT+TGG + chr1_3:28482009-28482028 Msa0112880:three_prime_UTR 40.0%
!! TGGTGATAGTTGGCTGTTTT+TGG + chr1_3:28482019-28482038 Msa0112880:three_prime_UTR 40.0%
!!! TGATAGTTGGCTGTTTTTGG+TGG + chr1_3:28482022-28482041 Msa0112880:three_prime_UTR 40.0%
!!! GTTTGTTTTGGAACGGATGG+TGG + chr1_3:28477103-28477122 Msa0112880:five_prime_UTR 45.0%
!!! GTTTTGTCTTGGCTTGTGTG+TGG - chr1_3:28477164-28477183 None:intergenic 45.0%
GACAAAACAAGAGAAGGTCG+AGG + chr1_3:28477176-28477195 Msa0112880:five_prime_UTR 45.0%
ACAAGAGAAGGTCGAGGAAT+TGG + chr1_3:28477182-28477201 Msa0112880:five_prime_UTR 45.0%
CAAGAGAAGGTCGAGGAATT+GGG + chr1_3:28477183-28477202 Msa0112880:five_prime_UTR 45.0%
AATTGGGATGGCTTCGTCAT+TGG + chr1_3:28477199-28477218 Msa0112880:exon 45.0%
TTGCTGAAGCAAGAAGTGGA+AGG - chr1_3:28477277-28477296 None:intergenic 45.0%
ACTACTTACTTAGGGGACGT+TGG - chr1_3:28477367-28477386 None:intergenic 45.0%
! ATTCAGTGTTGGACGCTGAA+AGG + chr1_3:28477486-28477505 Msa0112880:CDS 45.0%
AAGGATTGAACGTGTGAGTG+AGG + chr1_3:28477505-28477524 Msa0112880:CDS 45.0%
GAGCTTAATGCAACAGCCAT+TGG - chr1_3:28477615-28477634 None:intergenic 45.0%
AAGCTCTTATCCTGCAAGGT+AGG + chr1_3:28477629-28477648 Msa0112880:intron 45.0%
AAAGTAGGTACCTACCTTGC+AGG - chr1_3:28477642-28477661 None:intergenic 45.0%
GCTCAGAACGACAAGTTTGA+TGG + chr1_3:28477751-28477770 Msa0112880:intron 45.0%
CAGTAAGGGATCTCGATAGT+TGG - chr1_3:28477904-28477923 None:intergenic 45.0%
CGTAGATTCCGTAACAGTCA+AGG - chr1_3:28477935-28477954 None:intergenic 45.0%
! TCTCGTTCCCTTTCTGAGAA+AGG + chr1_3:28478120-28478139 Msa0112880:intron 45.0%
! CTCGTTCCCTTTCTGAGAAA+GGG + chr1_3:28478121-28478140 Msa0112880:intron 45.0%
GAGTACTCCCACCTCAATTA+TGG - chr1_3:28478306-28478325 None:intergenic 45.0%
GTCATTCCAAACAGTGCCAA+AGG + chr1_3:28478841-28478860 Msa0112880:intron 45.0%
ACTAAAGCTCTCACATACGC+AGG + chr1_3:28479128-28479147 Msa0112880:intron 45.0%
CTAAAGCTCTCACATACGCA+GGG + chr1_3:28479129-28479148 Msa0112880:intron 45.0%
GCGTACAATACACCAATGGT+GGG - chr1_3:28479168-28479187 None:intergenic 45.0%
TGCGTACAATACACCAATGG+TGG - chr1_3:28479169-28479188 None:intergenic 45.0%
GGTTGCGTACAATACACCAA+TGG - chr1_3:28479172-28479191 None:intergenic 45.0%
GGTGCCAAACAGATATCTCA+AGG - chr1_3:28479268-28479287 None:intergenic 45.0%
TTTACACACATGAGGGTCTG+TGG + chr1_3:28479619-28479638 Msa0112880:intron 45.0%
CTTTGCTTTCGCACCTAACA+CGG + chr1_3:28479758-28479777 Msa0112880:intron 45.0%
GTTCGGTAAATCACCGTGTT+AGG - chr1_3:28479774-28479793 None:intergenic 45.0%
GTTAGAATGCCAGTTGCTGT+TGG - chr1_3:28479803-28479822 None:intergenic 45.0%
ACTTGTCTGACTGATATCCC+TGG + chr1_3:28479930-28479949 Msa0112880:intron 45.0%
GCATCTGCTACTCATGGATA+GGG - chr1_3:28480371-28480390 None:intergenic 45.0%
TGCATCTGCTACTCATGGAT+AGG - chr1_3:28480372-28480391 None:intergenic 45.0%
GATACAGATTCTCATCGTCC+TGG + chr1_3:28480401-28480420 Msa0112880:intron 45.0%
! GTGCTATTCATGTCATCCTC+TGG + chr1_3:28480445-28480464 Msa0112880:intron 45.0%
! CCTTCCCTGCAAAACTTTTC+AGG - chr1_3:28480503-28480522 None:intergenic 45.0%
! CCTGAAAAGTTTTGCAGGGA+AGG + chr1_3:28480500-28480519 Msa0112880:intron 45.0%
TAACAAACTGTCCAGGTGGA+TGG + chr1_3:28481242-28481261 Msa0112880:intron 45.0%
ATGCTTACTAACCATCCACC+TGG - chr1_3:28481256-28481275 None:intergenic 45.0%
AGGTGGATGGTTAGTAAGCA+TGG + chr1_3:28481255-28481274 Msa0112880:intron 45.0%
GGTGGATGGTTAGTAAGCAT+GGG + chr1_3:28481256-28481275 Msa0112880:intron 45.0%
ATGTATGGAGCCATTTGGCT+AGG + chr1_3:28481337-28481356 Msa0112880:intron 45.0%
TGTATGGAGCCATTTGGCTA+GGG + chr1_3:28481338-28481357 Msa0112880:intron 45.0%
TACTCTGTGCGTCACTAAGA+GGG - chr1_3:28481374-28481393 None:intergenic 45.0%
ATAAGTAACCGTGGTTGCAC+TGG + chr1_3:28481740-28481759 Msa0112880:three_prime_UTR 45.0%
GGACAAATCGATAGCGTAAG+GGG + chr1_3:28481884-28481903 Msa0112880:three_prime_UTR 45.0%
GACAAATCGATAGCGTAAGG+GGG + chr1_3:28481885-28481904 Msa0112880:three_prime_UTR 45.0%
CGTAAGGGGGTTGTAAATCA+AGG + chr1_3:28481898-28481917 Msa0112880:three_prime_UTR 45.0%
!! TGTCTTGGCTTGTGTGTGGA+TGG - chr1_3:28477160-28477179 None:intergenic 50.0%
AGAAGGTCGAGGAATTGGGA+TGG + chr1_3:28477187-28477206 Msa0112880:exon 50.0%
!! CAAGAAGTGGAAGGCGTTGT+TGG - chr1_3:28477268-28477287 None:intergenic 50.0%
GGAGTTGCTGAAGCAAGAAG+TGG - chr1_3:28477281-28477300 None:intergenic 50.0%
! AGCAACGAAACGGGCTTTGT+GGG - chr1_3:28477312-28477331 None:intergenic 50.0%
! GCTTCCCCGTTTTATGTCAC+AGG + chr1_3:28478501-28478520 Msa0112880:CDS 50.0%
TTCCAAACAGTGCCAAAGGG+AGG + chr1_3:28478845-28478864 Msa0112880:intron 50.0%
TTCCTCCCTTTGGCACTGTT+TGG - chr1_3:28478850-28478869 None:intergenic 50.0%
AGACCAAAAAAAGGGCAGCC+TGG + chr1_3:28479102-28479121 Msa0112880:intron 50.0%
! TGTGAGAGCTTTAGTGCACC+AGG - chr1_3:28479123-28479142 None:intergenic 50.0%
TTCTAACCGAATGCCTCCAC+AGG + chr1_3:28479402-28479421 Msa0112880:intron 50.0%
CAAAGTGCAAGTGCAACCTG+TGG - chr1_3:28479421-28479440 None:intergenic 50.0%
CACAGGTTGCACTTGCACTT+TGG + chr1_3:28479419-28479438 Msa0112880:intron 50.0%
GTTGCACTTGCACTTTGGCA+TGG + chr1_3:28479424-28479443 Msa0112880:intron 50.0%
CGTGTTAGGTGCGAAAGCAA+AGG - chr1_3:28479760-28479779 None:intergenic 50.0%
! AATGCCAGTTGCTGTTGGAG+GGG - chr1_3:28479798-28479817 None:intergenic 50.0%
! GAATGCCAGTTGCTGTTGGA+GGG - chr1_3:28479799-28479818 None:intergenic 50.0%
! AGAATGCCAGTTGCTGTTGG+AGG - chr1_3:28479800-28479819 None:intergenic 50.0%
GTAGGGTTGAGATCAAACGC+TGG + chr1_3:28480866-28480885 Msa0112880:intron 50.0%
GGAAGGGAATTGAGAAGGGT+AGG + chr1_3:28481299-28481318 Msa0112880:intron 50.0%
GTACTCTGTGCGTCACTAAG+AGG - chr1_3:28481375-28481394 None:intergenic 50.0%
! TTGCCTTGAGGCATTTCCAG+AGG - chr1_3:28481692-28481711 None:intergenic 50.0%
AATGCCTCAAGGCAACCTCT+TGG + chr1_3:28481697-28481716 Msa0112880:CDS 50.0%
ATGCCTCAAGGCAACCTCTT+GGG + chr1_3:28481698-28481717 Msa0112880:CDS 50.0%
CAGATTTCACCTGTCCCAAG+AGG - chr1_3:28481715-28481734 None:intergenic 50.0%
! TGCTGCTTGTAGTGTGTGCA+TGG + chr1_3:28481808-28481827 Msa0112880:three_prime_UTR 50.0%
GGCTTGTGTGTGGATGGATG+TGG - chr1_3:28477154-28477173 None:intergenic 55.0%
! AAACGGGCTTTGTGGGTCGA+AGG - chr1_3:28477305-28477324 None:intergenic 55.0%
! GAGCAACGAAACGGGCTTTG+TGG - chr1_3:28477313-28477332 None:intergenic 55.0%
CTTACGGCGAGCAACGAAAC+GGG - chr1_3:28477321-28477340 None:intergenic 55.0%
CCTTACGGCGAGCAACGAAA+CGG - chr1_3:28477322-28477341 None:intergenic 55.0%
ACAGCTTCAGGGTTCCCCTA+TGG + chr1_3:28477723-28477742 Msa0112880:intron 55.0%
! GTTCTGAGCAGCGACCATAG+GGG - chr1_3:28477740-28477759 None:intergenic 55.0%
! CGTTCTGAGCAGCGACCATA+GGG - chr1_3:28477741-28477760 None:intergenic 55.0%
! TCGTTCTGAGCAGCGACCAT+AGG - chr1_3:28477742-28477761 None:intergenic 55.0%
! TGAGAGGTGTGTGCGAGGAA+GGG - chr1_3:28478942-28478961 None:intergenic 55.0%
! ATGAGAGGTGTGTGCGAGGA+AGG - chr1_3:28478943-28478962 None:intergenic 55.0%
! TGGAATGAGAGGTGTGTGCG+AGG - chr1_3:28478947-28478966 None:intergenic 55.0%
!!! GCACCAGGCTGCCCTTTTTT+TGG - chr1_3:28479108-28479127 None:intergenic 55.0%
ACATACGCAGGGTCCGAGAA+GGG + chr1_3:28479140-28479159 Msa0112880:intron 55.0%
!! GTGCAACCTGTGGAGGCATT+CGG - chr1_3:28479411-28479430 None:intergenic 55.0%
AGTGCAAGTGCAACCTGTGG+AGG - chr1_3:28479418-28479437 None:intergenic 55.0%
!! GTTGCTGTTGGAGGGGTGTT+CGG - chr1_3:28479791-28479810 None:intergenic 55.0%
AACACCCCTCCAACAGCAAC+TGG + chr1_3:28479791-28479810 Msa0112880:intron 55.0%
ATGGAGCCATTTGGCTAGGG+AGG + chr1_3:28481341-28481360 Msa0112880:intron 55.0%
CTGCAACCTCCCTAGCCAAA+TGG - chr1_3:28481350-28481369 None:intergenic 55.0%
! CTTGCTGACTACAGTAGCGG+TGG + chr1_3:28481530-28481549 Msa0112880:intron 55.0%
AGTAGCGGTGGCCAGAGTTA+TGG + chr1_3:28481542-28481561 Msa0112880:intron 55.0%
GATTATCAAGCCTGGGCCTC+TGG + chr1_3:28481673-28481692 Msa0112880:CDS 55.0%
TGTCCCAAGAGGTTGCCTTG+AGG - chr1_3:28481704-28481723 None:intergenic 55.0%
TCAAGGCAACCTCTTGGGAC+AGG + chr1_3:28481703-28481722 Msa0112880:CDS 55.0%
CCGTTTCGTTGCTCGCCGTA+AGG + chr1_3:28477319-28477338 Msa0112880:CDS 60.0%
GTGCGAGGAAGGGACACACA+TGG - chr1_3:28478932-28478951 None:intergenic 60.0%
CACATACGCAGGGTCCGAGA+AGG + chr1_3:28479139-28479158 Msa0112880:intron 60.0%
CATACGCAGGGTCCGAGAAG+GGG + chr1_3:28479141-28479160 Msa0112880:intron 60.0%
! CCAATGGTGGGACCCCTTCT+CGG - chr1_3:28479156-28479175 None:intergenic 60.0%
! TGAGGCATTTCCAGAGGCCC+AGG - chr1_3:28481686-28481705 None:intergenic 60.0%
! GGGCCTCTGGAAATGCCTCA+AGG + chr1_3:28481686-28481705 Msa0112880:CDS 60.0%
! AACCGTGGTTGCACTGGTGC+TGG + chr1_3:28481746-28481765 Msa0112880:three_prime_UTR 60.0%
AGCCAGCACCAGTGCAACCA+CGG - chr1_3:28481751-28481770 None:intergenic 60.0%
! CGGGCTTTGTGGGTCGAAGG+AGG - chr1_3:28477302-28477321 None:intergenic 65.0%
CCGAGAAGGGGTCCCACCAT+TGG + chr1_3:28479153-28479172 Msa0112880:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 28477089 28482077 28477089 ID=Msa0112880;Name=Msa0112880
chr1_3 mRNA 28477089 28482077 28477089 ID=Msa0112880-mRNA-1;Parent=Msa0112880;Name=Msa0112880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|0.8|0.83|1|0.6|0.83|6|342|213
chr1_3 exon 28477089 28477377 28477089 ID=Msa0112880-mRNA-1:exon:9370;Parent=Msa0112880-mRNA-1
chr1_3 exon 28477456 28477646 28477456 ID=Msa0112880-mRNA-1:exon:9371;Parent=Msa0112880-mRNA-1
chr1_3 exon 28477727 28477733 28477727 ID=Msa0112880-mRNA-1:exon:9372;Parent=Msa0112880-mRNA-1
chr1_3 exon 28478231 28478313 28478231 ID=Msa0112880-mRNA-1:exon:9373;Parent=Msa0112880-mRNA-1
chr1_3 exon 28478406 28478522 28478406 ID=Msa0112880-mRNA-1:exon:9374;Parent=Msa0112880-mRNA-1
chr1_3 exon 28481664 28482077 28481664 ID=Msa0112880-mRNA-1:exon:9375;Parent=Msa0112880-mRNA-1
chr1_3 five_prime_UTR 28477089 28477205 28477089 ID=Msa0112880-mRNA-1:five_prime_utr;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28477206 28477377 28477206 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28477456 28477646 28477456 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28477727 28477733 28477727 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28478231 28478313 28478231 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28478406 28478522 28478406 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 CDS 28481664 28481735 28481664 ID=Msa0112880-mRNA-1:cds;Parent=Msa0112880-mRNA-1
chr1_3 three_prime_UTR 28481736 28482077 28481736 ID=Msa0112880-mRNA-1:three_prime_utr;Parent=Msa0112880-mRNA-1
Gene Sequence

>Msa0112880

ATGGCTTCGTCATTGGTTAGTTCCATTCTTGTTCAACCCATTTCACGTTGTCATCAACTCCAACAACGCCTTCCACTTCTTGCTTCAGCAACTCCTCCTTCGACCCACAAAGCCCGTTTCGTTGCTCGCCGTAAGGAGTCTGTTTCTGTTCAACAACTCCAACGTCCCCTAATTGAATATATGAGGTTACCAGCAAGTCAATATTCAGTGTTGGACGCTGAAAGGATTGAACGTGTGAGTGAGGATACATTCAGATGTTACGTTTACACAATTAAGTTTTTCACATTTGAGGTTTGTCCTGTTTTGCTTGTCAAAGTTGAACAACAACCCAATGGCTGTTGCATTAAGCTCTTATCCTGCAAGCTTCAGGCTATAATGGTGAACCGGATATCGTGTGAAAGTGACTCAGATAAGTCACTGGTGCAGCAACTCACATCAGACACCATAATTGAGGTAAGCATTGAAATTCCTTTCGCTTTCAAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAGATTATGCTTCCCCGTTTTATGTCACAGCTTGTGAAAGATTATCAAGCCTGGGCCTCTGGAAATGCCTCAAGGCAACCTCTTGGGACAGGTGAAATCTGA

Protein sequence

>Msa0112880

MASSLVSSILVQPISRCHQLQQRLPLLASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAGTQVLEQILKIMLPRFMSQLVKDYQAWASGNASRQPLGTGEI*