AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168770 MtrunA17_Chr1g0170671 92.453 212 13 1 1 209 1 212 1.07e-145 404
Msa0168770 MtrunA17_Chr5g0403911 39.375 160 86 3 56 205 26 184 2.71e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168770 AT5G51110.2 68.605 172 53 1 39 209 22 193 6.76e-87 254
Msa0168770 AT5G51110.1 64.021 189 66 2 23 209 32 220 2.69e-85 251
Msa0168770 AT1G29810.2 38.211 123 75 1 85 206 23 145 2.30e-28 104
Msa0168770 AT1G29810.1 38.211 123 75 1 85 206 62 184 5.67e-28 104

Find 78 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACAAAATACTTTA+TGG 0.114079 1_4:-51668360 None:intergenic
AGAGAAAGAGCAGAGATATT+TGG 0.213526 1_4:-51665396 None:intergenic
GTTGCTTGGTGTTTGTTTAT+TGG 0.220068 1_4:-51665082 None:intergenic
CAGTTTGGAGAGAAAGTTAT+AGG 0.263947 1_4:+51665342 Msa0168770:CDS
GTGTGGATTGTGAAGTTTAA+TGG 0.269327 1_4:-51665056 None:intergenic
TTGCTTGGTGTTTGTTTATT+GGG 0.271612 1_4:-51665081 None:intergenic
GAGAAAGAGCAGAGATATTT+GGG 0.293549 1_4:-51665395 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1_4:-51667414 None:intergenic
AGGGTTGAGTTTGGTGGTGG+TGG 0.312013 1_4:-51665205 None:intergenic
AGTTCTGCTCTGACTTGATT+TGG 0.343959 1_4:-51667435 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1_4:-51667415 None:intergenic
GTGAAAATGACCTGCATTGC+TGG 0.348015 1_4:+51668599 Msa0168770:three_prime_UTR
TAATAGCCTCTGGTGGTAAT+AGG 0.359320 1_4:-51664980 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.364640 1_4:-51665389 None:intergenic
AGTGTTAACATGTATATAAA+TGG 0.378902 1_4:-51668525 None:intergenic
GGGGACTGTAAAGGTGAAAT+GGG 0.394511 1_4:-51665438 None:intergenic
GTTGTGTTGTTTGTGTGGAT+TGG 0.396600 1_4:-51665020 None:intergenic
ATCAAGTCAGAGCAGAACTA+TGG 0.396655 1_4:+51667439 Msa0168770:CDS
ATTGAATGAAGGGTTGAGTT+TGG 0.402466 1_4:-51665214 None:intergenic
GGGTTGAGTTTGGTGGTGGT+GGG 0.424054 1_4:-51665204 None:intergenic
CATTATACTTAACAGACTTC+AGG 0.426078 1_4:-51668470 None:intergenic
GCTGAGTTGGAAAGTCAGTT+TGG 0.429565 1_4:+51665327 Msa0168770:CDS
CATCAAATAACACAAATTAG+TGG 0.437756 1_4:-51668403 None:intergenic
GTAGTGTTTATTAAAATCAA+TGG 0.439509 1_4:+51665134 Msa0168770:exon
ATGTTACCTTTCTTATAAGC+TGG 0.450280 1_4:-51665482 None:intergenic
AACTGACTTTCCAACTCAGC+TGG 0.450920 1_4:-51665324 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.454566 1_4:-51667422 None:intergenic
ATTGTGAAGTTTAATGGAAT+GGG 0.458953 1_4:-51665050 None:intergenic
TTTCAGAACCGTACTCCAAA+CGG 0.461066 1_4:+51665237 Msa0168770:CDS
TTCAGAACCGTACTCCAAAC+GGG 0.462057 1_4:+51665238 Msa0168770:CDS
AAAATACTTTATGGAGCTCA+TGG 0.462531 1_4:-51668351 None:intergenic
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1_4:-51665252 None:intergenic
TGAAGGGTTGAGTTTGGTGG+TGG 0.469376 1_4:-51665208 None:intergenic
TGTCCCAAGGAAAAGAGCTT+GGG 0.472741 1_4:+51668319 Msa0168770:CDS
GGGACTGTAAAGGTGAAATG+GGG 0.478411 1_4:-51665437 None:intergenic
TGTGGATTGGATTTGCTTGG+TGG 0.483861 1_4:-51665007 None:intergenic
GTCGGTGTATCCAGCAATGC+AGG 0.484708 1_4:-51668609 None:intergenic
TTGTGTGGATTGGATTTGCT+TGG 0.489697 1_4:-51665010 None:intergenic
CGGTTCTGAAAATTGAATGA+AGG 0.495691 1_4:-51665225 None:intergenic
GAGAGAACCCGTTTGGAGTA+CGG 0.497420 1_4:-51665245 None:intergenic
GTAATGTTGTGTTGTTTGTG+TGG 0.497700 1_4:-51665025 None:intergenic
TACTTAAACTTCGATGCTTG+TGG 0.499142 1_4:+51667316 Msa0168770:CDS
CTTTCCAACTCAGCTGGGAA+AGG 0.499229 1_4:-51665318 None:intergenic
TGCTAACCAGCTTATAAGAA+AGG 0.502324 1_4:+51665476 Msa0168770:CDS
GGTTAGCATCATCTTGAGAA+AGG 0.509678 1_4:-51665461 None:intergenic
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1_4:+51665314 Msa0168770:CDS
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1_4:-51665317 None:intergenic
GTTAGCATCATCTTGAGAAA+GGG 0.522512 1_4:-51665460 None:intergenic
TTGTCCCAAGGAAAAGAGCT+TGG 0.523587 1_4:+51668318 Msa0168770:CDS
GATTGTGAAGTTTAATGGAA+TGG 0.532775 1_4:-51665051 None:intergenic
TGTTTGTTTATTGGGTTGTG+TGG 0.538375 1_4:-51665073 None:intergenic
GGTTCTGAAAATTGAATGAA+GGG 0.540341 1_4:-51665224 None:intergenic
CCTCTGGTGGTAATAGGTGG+TGG 0.542236 1_4:-51664974 None:intergenic
TGGTGGTCAATAATAGCCTC+TGG 0.543050 1_4:-51664990 None:intergenic
GTGGGATTTACATGTACCAC+AGG 0.543598 1_4:-51665186 None:intergenic
TTAACATGTATATAAATGGC+TGG 0.554682 1_4:-51668521 None:intergenic
GAATGATAACAATACAAGCT+TGG 0.569725 1_4:-51665163 None:intergenic
TGGAGACTTGTGAATGATGA+AGG 0.574412 1_4:+51667291 Msa0168770:CDS
GAATGAAGGGTTGAGTTTGG+TGG 0.578352 1_4:-51665211 None:intergenic
TCTACGGTTGTAGAGACTGC+AGG 0.582828 1_4:+51667384 Msa0168770:CDS
ACTCATTAACAGAATCTCTA+CGG 0.587267 1_4:+51667368 Msa0168770:CDS
ACTGACTTTCCAACTCAGCT+GGG 0.590933 1_4:-51665323 None:intergenic
GAACTATGGACAACATCCAT+TGG 0.598647 1_4:+51667453 Msa0168770:CDS
GTTGTTCTATGTGGATATTG+GGG 0.611420 1_4:-51667413 None:intergenic
TTGTATGATAAAGGAAGTGT+CGG 0.612051 1_4:-51668627 None:intergenic
GGACTGTAAAGGTGAAATGG+GGG 0.615160 1_4:-51665436 None:intergenic
TGTATTGTTATCATTCCCTG+TGG 0.623089 1_4:+51665170 Msa0168770:CDS
AGCATCATCTTGAGAAAGGG+GGG 0.631020 1_4:-51665457 None:intergenic
TTAGCATCATCTTGAGAAAG+GGG 0.631573 1_4:-51665459 None:intergenic
CATGTTAACACTTCTACATG+AGG 0.636812 1_4:+51668536 Msa0168770:three_prime_UTR
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1_4:+51665253 Msa0168770:CDS
TAGCCTCTGGTGGTAATAGG+TGG 0.637212 1_4:-51664977 None:intergenic
TAGCATCATCTTGAGAAAGG+GGG 0.654155 1_4:-51665458 None:intergenic
AGACATCAGATCTTGTCCCA+AGG 0.671698 1_4:+51668306 Msa0168770:CDS
CCACCACCTATTACCACCAG+AGG 0.688908 1_4:+51664974 Msa0168770:five_prime_UTR
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1_4:-51665267 None:intergenic
TGGTCAATAATAGCCTCTGG+TGG 0.715405 1_4:-51664987 None:intergenic
TGGGATTTACATGTACCACA+GGG 0.757510 1_4:-51665185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAAATAAAAAATAAC+AGG - chr1_4:51667028-51667047 None:intergenic 10.0%
!!! ATTTATATTTTGTTTACGAA+AGG + chr1_4:51665766-51665785 Msa0168770:intron 15.0%
!!! TTCATAATCAAATTACATTT+TGG - chr1_4:51666351-51666370 None:intergenic 15.0%
!! TACATATATAATCTATTGAA+TGG - chr1_4:51666438-51666457 None:intergenic 15.0%
!! ATATCTTTGCAATTATAAAA+GGG - chr1_4:51666726-51666745 None:intergenic 15.0%
!! AATATCTTTGCAATTATAAA+AGG - chr1_4:51666727-51666746 None:intergenic 15.0%
!!! TATAAAATAAGTGTCTTTTA+AGG - chr1_4:51667608-51667627 None:intergenic 15.0%
!!! TTTTTTTGTAACCATATTAT+TGG - chr1_4:51667825-51667844 None:intergenic 15.0%
!! ATTCATAACAAAATACTTTA+TGG - chr1_4:51668363-51668382 None:intergenic 15.0%
!! GTAGTGTTTATTAAAATCAA+TGG + chr1_4:51665134-51665153 Msa0168770:exon 20.0%
!!! GTTTTTCTTTTATAGAGAAA+TGG - chr1_4:51666150-51666169 None:intergenic 20.0%
!! TATATTGAAACATTGAAAGA+TGG + chr1_4:51666620-51666639 Msa0168770:intron 20.0%
!!! CTTTTTTTTCTTTGCTAATA+AGG - chr1_4:51666998-51667017 None:intergenic 20.0%
!!! GTTTTTCTTTTCATTTATGT+AGG + chr1_4:51667260-51667279 Msa0168770:intron 20.0%
!!! TTTTCATTTATGTAGGTTTT+GGG + chr1_4:51667267-51667286 Msa0168770:intron 20.0%
!!! AAATTGAGAGATTTTAAATG+CGG + chr1_4:51667339-51667358 Msa0168770:CDS 20.0%
!! AACTAATAACTAAGAATGAT+AGG - chr1_4:51667515-51667534 None:intergenic 20.0%
!! TATACTTTGTACCAATAATA+TGG + chr1_4:51667811-51667830 Msa0168770:intron 20.0%
!! AGATATTTGTATAATCATAG+AGG + chr1_4:51667851-51667870 Msa0168770:intron 20.0%
!! GATATTTGTATAATCATAGA+GGG + chr1_4:51667852-51667871 Msa0168770:intron 20.0%
!! AGTGTTAACATGTATATAAA+TGG - chr1_4:51668528-51668547 None:intergenic 20.0%
! ATTGTGAAGTTTAATGGAAT+GGG - chr1_4:51665053-51665072 None:intergenic 25.0%
!! TCTTTTAACAACGATTTCTT+GGG + chr1_4:51665276-51665295 Msa0168770:CDS 25.0%
! TAGACACCTAATTTGAAAAA+TGG + chr1_4:51665557-51665576 Msa0168770:intron 25.0%
!!! TCACATCCATTTTTCAAATT+AGG - chr1_4:51665566-51665585 None:intergenic 25.0%
!!! TATATTTTGTTTACGAAAGG+AGG + chr1_4:51665769-51665788 Msa0168770:intron 25.0%
!!! ATATTTTGTTTACGAAAGGA+GGG + chr1_4:51665770-51665789 Msa0168770:intron 25.0%
! TTATCCTATCTTAGAAATTG+TGG + chr1_4:51665820-51665839 Msa0168770:intron 25.0%
! ATGAACATGTGTTTATAAGT+GGG - chr1_4:51665895-51665914 None:intergenic 25.0%
! AGTGTTAAATAGTCTCTAAT+CGG - chr1_4:51665930-51665949 None:intergenic 25.0%
!!! ACCACCAAACTAATTTTTTT+GGG - chr1_4:51666056-51666075 None:intergenic 25.0%
!!! TACCACCAAACTAATTTTTT+TGG - chr1_4:51666057-51666076 None:intergenic 25.0%
! AGAAAAACGTTATAAGACAT+AGG + chr1_4:51666162-51666181 Msa0168770:intron 25.0%
! TTGGTAAAAGTTAAGATGAA+CGG - chr1_4:51666270-51666289 None:intergenic 25.0%
!!! ATCAAATTACATTTTGGTCA+AGG - chr1_4:51666345-51666364 None:intergenic 25.0%
! TTTGAATGGTGCATAAAATT+TGG + chr1_4:51666529-51666548 Msa0168770:intron 25.0%
!! GTTGAATCTGTATTTTCATT+TGG + chr1_4:51666767-51666786 Msa0168770:intron 25.0%
!! TTTGTTACTGTTACCATTTT+CGG + chr1_4:51666828-51666847 Msa0168770:intron 25.0%
! ATTCAAAGTCTTCAAATTTG+AGG - chr1_4:51666921-51666940 None:intergenic 25.0%
! CTAATGAATAGATGACAATA+AGG - chr1_4:51667077-51667096 None:intergenic 25.0%
!! CTTTTCATTTATGTAGGTTT+TGG + chr1_4:51667266-51667285 Msa0168770:intron 25.0%
! AATAACTAAGAATGATAGGA+GGG - chr1_4:51667511-51667530 None:intergenic 25.0%
! TAATAACTAAGAATGATAGG+AGG - chr1_4:51667512-51667531 None:intergenic 25.0%
!!! GGTAATACAAGTGTTTTTTA+AGG - chr1_4:51667636-51667655 None:intergenic 25.0%
! TCAATGATATTAAATGCAGT+AGG - chr1_4:51667882-51667901 None:intergenic 25.0%
!!! AACTGTCGATTTTATGTTTT+TGG - chr1_4:51668088-51668107 None:intergenic 25.0%
!!! CAAGATGAGAACTTATTTTT+AGG - chr1_4:51668193-51668212 None:intergenic 25.0%
!! TTTAAAGCATGACATTTGAA+AGG + chr1_4:51668216-51668235 Msa0168770:intron 25.0%
! CATCAAATAACACAAATTAG+TGG - chr1_4:51668406-51668425 None:intergenic 25.0%
! TTAACATGTATATAAATGGC+TGG - chr1_4:51668524-51668543 None:intergenic 25.0%
GATTGTGAAGTTTAATGGAA+TGG - chr1_4:51665054-51665073 None:intergenic 30.0%
!! TTGCTTGGTGTTTGTTTATT+GGG - chr1_4:51665084-51665103 None:intergenic 30.0%
GAATGATAACAATACAAGCT+TGG - chr1_4:51665166-51665185 None:intergenic 30.0%
!! GGTTCTGAAAATTGAATGAA+GGG - chr1_4:51665227-51665246 None:intergenic 30.0%
! GTCTTTTAACAACGATTTCT+TGG + chr1_4:51665275-51665294 Msa0168770:CDS 30.0%
! CTTTTAACAACGATTTCTTG+GGG + chr1_4:51665277-51665296 Msa0168770:CDS 30.0%
! TTTTAACAACGATTTCTTGG+GGG + chr1_4:51665278-51665297 Msa0168770:CDS 30.0%
ATGTTACCTTTCTTATAAGC+TGG - chr1_4:51665485-51665504 None:intergenic 30.0%
TCTCTAAGCAACTATATACA+CGG + chr1_4:51665511-51665530 Msa0168770:intron 30.0%
CACACACAACTATACAAAAA+TGG - chr1_4:51665669-51665688 None:intergenic 30.0%
! CATTTTTGTATAGTTGTGTG+TGG + chr1_4:51665667-51665686 Msa0168770:intron 30.0%
TGAACATGTGTTTATAAGTG+GGG - chr1_4:51665894-51665913 None:intergenic 30.0%
CATGAACATGTGTTTATAAG+TGG - chr1_4:51665896-51665915 None:intergenic 30.0%
AACTATATTACCTTCCAACA+TGG - chr1_4:51665966-51665985 None:intergenic 30.0%
GCATATAAGCTATAAAGACT+AGG + chr1_4:51666029-51666048 Msa0168770:intron 30.0%
AGGTCCCAAAAAAATTAGTT+TGG + chr1_4:51666049-51666068 Msa0168770:intron 30.0%
! TCCCAAAAAAATTAGTTTGG+TGG + chr1_4:51666052-51666071 Msa0168770:intron 30.0%
ACTCACAGATTACTTACAAA+GGG - chr1_4:51666211-51666230 None:intergenic 30.0%
TACTCACAGATTACTTACAA+AGG - chr1_4:51666212-51666231 None:intergenic 30.0%
! ATCTTAACTTTTACCAAACG+AGG + chr1_4:51666273-51666292 Msa0168770:intron 30.0%
ATATGAACTATGAACCACTA+AGG + chr1_4:51666483-51666502 Msa0168770:intron 30.0%
TATGAACTATGAACCACTAA+GGG + chr1_4:51666484-51666503 Msa0168770:intron 30.0%
TTATCTGCTGAACATTTGAA+TGG + chr1_4:51666515-51666534 Msa0168770:intron 30.0%
! TGCACATTTGATATCAGTTT+TGG + chr1_4:51666675-51666694 Msa0168770:intron 30.0%
AACATGATATACAAGTGTTC+AGG + chr1_4:51666795-51666814 Msa0168770:intron 30.0%
TGAATAGATGACAATAAGGA+AGG - chr1_4:51667073-51667092 None:intergenic 30.0%
TCTTATGGTTGTAGCTTATT+TGG - chr1_4:51667169-51667188 None:intergenic 30.0%
GAGTTATGAATAGCTTCTTA+TGG - chr1_4:51667184-51667203 None:intergenic 30.0%
AGAAGCTAGACAATGTAAAA+TGG - chr1_4:51667235-51667254 None:intergenic 30.0%
ACTCATTAACAGAATCTCTA+CGG + chr1_4:51667368-51667387 Msa0168770:CDS 30.0%
ACACTTGTATTACCAATTGT+TGG + chr1_4:51667642-51667661 Msa0168770:intron 30.0%
TATTGGTACAAAGTATATGC+CGG - chr1_4:51667808-51667827 None:intergenic 30.0%
GAGGAAAGATGAATGATAAA+GGG - chr1_4:51667975-51667994 None:intergenic 30.0%
! GAAAGGATTCAATATTTTGC+AGG + chr1_4:51668233-51668252 Msa0168770:intron 30.0%
AAAATACTTTATGGAGCTCA+TGG - chr1_4:51668354-51668373 None:intergenic 30.0%
CATTATACTTAACAGACTTC+AGG - chr1_4:51668473-51668492 None:intergenic 30.0%
!! GTAATGTTGTGTTGTTTGTG+TGG - chr1_4:51665028-51665047 None:intergenic 35.0%
! GTGTGGATTGTGAAGTTTAA+TGG - chr1_4:51665059-51665078 None:intergenic 35.0%
! TGTTTGTTTATTGGGTTGTG+TGG - chr1_4:51665076-51665095 None:intergenic 35.0%
!! GTTGCTTGGTGTTTGTTTAT+TGG - chr1_4:51665085-51665104 None:intergenic 35.0%
!! ACTTCTTCTTTTGTGTTGCT+TGG - chr1_4:51665099-51665118 None:intergenic 35.0%
TGTATTGTTATCATTCCCTG+TGG + chr1_4:51665170-51665189 Msa0168770:CDS 35.0%
ATTGAATGAAGGGTTGAGTT+TGG - chr1_4:51665217-51665236 None:intergenic 35.0%
!! CGGTTCTGAAAATTGAATGA+AGG - chr1_4:51665228-51665247 None:intergenic 35.0%
CAGTTTGGAGAGAAAGTTAT+AGG + chr1_4:51665342-51665361 Msa0168770:CDS 35.0%
GAGAAAGAGCAGAGATATTT+GGG - chr1_4:51665398-51665417 None:intergenic 35.0%
AGAGAAAGAGCAGAGATATT+TGG - chr1_4:51665399-51665418 None:intergenic 35.0%
TTAGCATCATCTTGAGAAAG+GGG - chr1_4:51665462-51665481 None:intergenic 35.0%
GTTAGCATCATCTTGAGAAA+GGG - chr1_4:51665463-51665482 None:intergenic 35.0%
TGCTAACCAGCTTATAAGAA+AGG + chr1_4:51665476-51665495 Msa0168770:CDS 35.0%
TTTAATGTAACCACGTGTGT+CGG + chr1_4:51665586-51665605 Msa0168770:intron 35.0%
GGGATGAAGATATTTGAATC+TGG + chr1_4:51665790-51665809 Msa0168770:intron 35.0%
TCCTATCTTAGAAATTGTGG+TGG + chr1_4:51665823-51665842 Msa0168770:intron 35.0%
CCTATCTTAGAAATTGTGGT+GGG + chr1_4:51665824-51665843 Msa0168770:intron 35.0%
CTATCTTAGAAATTGTGGTG+GGG + chr1_4:51665825-51665844 Msa0168770:intron 35.0%
CTTAATACAACCCAACCAAA+CGG + chr1_4:51665848-51665867 Msa0168770:intron 35.0%
GAACATGTGTTTATAAGTGG+GGG - chr1_4:51665893-51665912 None:intergenic 35.0%
TGAGATTACATTCTCCATGT+TGG + chr1_4:51665949-51665968 Msa0168770:intron 35.0%
ATTACATTCTCCATGTTGGA+AGG + chr1_4:51665953-51665972 Msa0168770:intron 35.0%
! ATTAGTTTGGTGGTATGAGT+TGG + chr1_4:51666062-51666081 Msa0168770:intron 35.0%
!! AACACAGAAGGAGTACTATT+AGG + chr1_4:51666085-51666104 Msa0168770:intron 35.0%
ACATAGGATTAATTCTCGCT+GGG + chr1_4:51666178-51666197 Msa0168770:intron 35.0%
CTCACAGATTACTTACAAAG+GGG - chr1_4:51666210-51666229 None:intergenic 35.0%
! AAGCTTACATTTTCCTCGTT+TGG - chr1_4:51666289-51666308 None:intergenic 35.0%
TGAAGACAAAAAAGACTACG+AGG + chr1_4:51666367-51666386 Msa0168770:intron 35.0%
GCATAGCATATACATCTTCA+TGG - chr1_4:51666416-51666435 None:intergenic 35.0%
GATAAATTCAAAGCCCTTAG+TGG - chr1_4:51666500-51666519 None:intergenic 35.0%
TGATATCAAATGTGCATCTG+AGG - chr1_4:51666671-51666690 None:intergenic 35.0%
TACAGATTCAACACTGTGTA+CGG - chr1_4:51666759-51666778 None:intergenic 35.0%
GAACAGACTTTATCCGAAAA+TGG - chr1_4:51666844-51666863 None:intergenic 35.0%
GGACTTCTATGAAATTTGCA+GGG - chr1_4:51667214-51667233 None:intergenic 35.0%
TGGACTTCTATGAAATTTGC+AGG - chr1_4:51667215-51667234 None:intergenic 35.0%
!!! CATTTATGTAGGTTTTGGGT+TGG + chr1_4:51667271-51667290 Msa0168770:intron 35.0%
TACTTAAACTTCGATGCTTG+TGG + chr1_4:51667316-51667335 Msa0168770:CDS 35.0%
GTTGTTCTATGTGGATATTG+GGG - chr1_4:51667416-51667435 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG - chr1_4:51667417-51667436 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG - chr1_4:51667418-51667437 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG - chr1_4:51667425-51667444 None:intergenic 35.0%
TAGGAGGGATAAGATAAGAA+GGG - chr1_4:51667496-51667515 None:intergenic 35.0%
ATAGGAGGGATAAGATAAGA+AGG - chr1_4:51667497-51667516 None:intergenic 35.0%
! TTAAGGTTGCTTTGCAAACA+TGG - chr1_4:51667591-51667610 None:intergenic 35.0%
AAACTTGAGACTTTGCTCAA+GGG - chr1_4:51667691-51667710 None:intergenic 35.0%
GATTATAATCATCTGCAAGC+CGG + chr1_4:51667786-51667805 Msa0168770:intron 35.0%
GAGGGTTAAACAATCTATCA+TGG + chr1_4:51667944-51667963 Msa0168770:intron 35.0%
GGAGGAAAGATGAATGATAA+AGG - chr1_4:51667976-51667995 None:intergenic 35.0%
TACATAATCTCCATTAGGGA+AGG - chr1_4:51667997-51668016 None:intergenic 35.0%
TTCCCTAATGGAGATTATGT+AGG + chr1_4:51667996-51668015 Msa0168770:intron 35.0%
TGCCTACATAATCTCCATTA+GGG - chr1_4:51668001-51668020 None:intergenic 35.0%
!!! GTTTTTAGTGAAATCAGAGC+TGG - chr1_4:51668036-51668055 None:intergenic 35.0%
! AGGATTCAATATTTTGCAGG+TGG + chr1_4:51668236-51668255 Msa0168770:intron 35.0%
CATGTTAACACTTCTACATG+AGG + chr1_4:51668536-51668555 Msa0168770:three_prime_UTR 35.0%
TAATAGCCTCTGGTGGTAAT+AGG - chr1_4:51664983-51665002 None:intergenic 40.0%
!! TTGTGTGGATTGGATTTGCT+TGG - chr1_4:51665013-51665032 None:intergenic 40.0%
!! GTTGTGTTGTTTGTGTGGAT+TGG - chr1_4:51665023-51665042 None:intergenic 40.0%
TGGGATTTACATGTACCACA+GGG - chr1_4:51665188-51665207 None:intergenic 40.0%
TTTCAGAACCGTACTCCAAA+CGG + chr1_4:51665237-51665256 Msa0168770:CDS 40.0%
TCGTTGTTAAAAGACCGAAG+TGG - chr1_4:51665270-51665289 None:intergenic 40.0%
! AACGATTTCTTGGGGGATTT+TGG + chr1_4:51665285-51665304 Msa0168770:CDS 40.0%
! GAGCAGAGATATTTGGGATA+AGG - chr1_4:51665392-51665411 None:intergenic 40.0%
TAGCATCATCTTGAGAAAGG+GGG - chr1_4:51665461-51665480 None:intergenic 40.0%
GGTTAGCATCATCTTGAGAA+AGG - chr1_4:51665464-51665483 None:intergenic 40.0%
TTGTATAGTTGTGTGTGGAG+AGG + chr1_4:51665672-51665691 Msa0168770:intron 40.0%
TGTATAGTTGTGTGTGGAGA+GGG + chr1_4:51665673-51665692 Msa0168770:intron 40.0%
!! CCCACCACAATTTCTAAGAT+AGG - chr1_4:51665827-51665846 None:intergenic 40.0%
GTCTCTAATCGGACAAAAGA+TGG - chr1_4:51665919-51665938 None:intergenic 40.0%
AGTTGTAGCTGAAAACCACA+TGG + chr1_4:51665982-51666001 Msa0168770:intron 40.0%
!! ACAGAAGGAGTACTATTAGG+AGG + chr1_4:51666088-51666107 Msa0168770:intron 40.0%
GACATAGGATTAATTCTCGC+TGG + chr1_4:51666177-51666196 Msa0168770:intron 40.0%
TTCGGATAAAGTCTGTTCGA+TGG + chr1_4:51666846-51666865 Msa0168770:intron 40.0%
TGGAGACTTGTGAATGATGA+AGG + chr1_4:51667291-51667310 Msa0168770:CDS 40.0%
! AGTTCTGCTCTGACTTGATT+TGG - chr1_4:51667438-51667457 None:intergenic 40.0%
ATCAAGTCAGAGCAGAACTA+TGG + chr1_4:51667439-51667458 Msa0168770:CDS 40.0%
GAACTATGGACAACATCCAT+TGG + chr1_4:51667453-51667472 Msa0168770:CDS 40.0%
!! ATAAGAAGGGTACTGGTGTA+AGG - chr1_4:51667483-51667502 None:intergenic 40.0%
! GGATAAGATAAGAAGGGTAC+TGG - chr1_4:51667490-51667509 None:intergenic 40.0%
GATCTAAGCCTAGTTGTACT+CGG - chr1_4:51667669-51667688 None:intergenic 40.0%
CAAACTTGAGACTTTGCTCA+AGG - chr1_4:51667692-51667711 None:intergenic 40.0%
TTTAGTGTGGTCTTCTGTCT+CGG - chr1_4:51667740-51667759 None:intergenic 40.0%
ATAGCAGGTCACATTTAGTG+TGG - chr1_4:51667753-51667772 None:intergenic 40.0%
! ATGTGACCTGCTATGTTTTC+CGG + chr1_4:51667759-51667778 Msa0168770:intron 40.0%
CAGATGATTATAATCTCCGC+CGG - chr1_4:51667781-51667800 None:intergenic 40.0%
TGATTGCAAGTTCTCAGTAG+AGG + chr1_4:51667925-51667944 Msa0168770:intron 40.0%
GATTGCAAGTTCTCAGTAGA+GGG + chr1_4:51667926-51667945 Msa0168770:intron 40.0%
ATAATCTCCATTAGGGAAGG+AGG - chr1_4:51667994-51668013 None:intergenic 40.0%
GTGCCTACATAATCTCCATT+AGG - chr1_4:51668002-51668021 None:intergenic 40.0%
GATTATGTAGGCACCAAACT+CGG + chr1_4:51668008-51668027 Msa0168770:intron 40.0%
CACTAGAGTTTGAGAAACCT+GGG + chr1_4:51668118-51668137 Msa0168770:intron 40.0%
TGGTCAATAATAGCCTCTGG+TGG - chr1_4:51664990-51665009 None:intergenic 45.0%
TGGTGGTCAATAATAGCCTC+TGG - chr1_4:51664993-51665012 None:intergenic 45.0%
!! TGTGGATTGGATTTGCTTGG+TGG - chr1_4:51665010-51665029 None:intergenic 45.0%
GTGGGATTTACATGTACCAC+AGG - chr1_4:51665189-51665208 None:intergenic 45.0%
GAATGAAGGGTTGAGTTTGG+TGG - chr1_4:51665214-51665233 None:intergenic 45.0%
TTCAGAACCGTACTCCAAAC+GGG + chr1_4:51665238-51665257 Msa0168770:CDS 45.0%
TTTCCAACTCAGCTGGGAAA+GGG - chr1_4:51665320-51665339 None:intergenic 45.0%
! ACTGACTTTCCAACTCAGCT+GGG - chr1_4:51665326-51665345 None:intergenic 45.0%
! AACTGACTTTCCAACTCAGC+TGG - chr1_4:51665327-51665346 None:intergenic 45.0%
! GCTGAGTTGGAAAGTCAGTT+TGG + chr1_4:51665327-51665346 Msa0168770:CDS 45.0%
GGACTGTAAAGGTGAAATGG+GGG - chr1_4:51665439-51665458 None:intergenic 45.0%
GGGACTGTAAAGGTGAAATG+GGG - chr1_4:51665440-51665459 None:intergenic 45.0%
GGGGACTGTAAAGGTGAAAT+GGG - chr1_4:51665441-51665460 None:intergenic 45.0%
AGCATCATCTTGAGAAAGGG+GGG - chr1_4:51665460-51665479 None:intergenic 45.0%
ACTATATACACCGACACACG+TGG - chr1_4:51665599-51665618 None:intergenic 45.0%
AAAACCACATGGAGCATGTC+AGG + chr1_4:51665993-51666012 Msa0168770:intron 45.0%
AAACCACATGGAGCATGTCA+GGG + chr1_4:51665994-51666013 Msa0168770:intron 45.0%
! GGTATGAGTTGGAACACAGA+AGG + chr1_4:51666073-51666092 Msa0168770:intron 45.0%
! GGAGTACTATTAGGAGGTTC+AGG + chr1_4:51666094-51666113 Msa0168770:intron 45.0%
GGATAAAGTCTGTTCGATGG+AGG + chr1_4:51666849-51666868 Msa0168770:intron 45.0%
ACTGGTGTAAGGCTTACCAA+TGG - chr1_4:51667472-51667491 None:intergenic 45.0%
GTTGTACTCGGTCCAACAAT+TGG - chr1_4:51667657-51667676 None:intergenic 45.0%
TTGTTGGACCGAGTACAACT+AGG + chr1_4:51667658-51667677 Msa0168770:intron 45.0%
AGTCTCAAGTTTGTGCCTTG+TGG + chr1_4:51667699-51667718 Msa0168770:intron 45.0%
GTCTCAAGTTTGTGCCTTGT+GGG + chr1_4:51667700-51667719 Msa0168770:intron 45.0%
!!! CCATGTTTTTTCCACCCACA+AGG - chr1_4:51667717-51667736 None:intergenic 45.0%
CCTTGTGGGTGGAAAAAACA+TGG + chr1_4:51667714-51667733 Msa0168770:intron 45.0%
CATCTTTCCTCCTTCCCTAA+TGG + chr1_4:51667984-51668003 Msa0168770:intron 45.0%
GCACTAGAGTTTGAGAAACC+TGG + chr1_4:51668117-51668136 Msa0168770:intron 45.0%
AGACATCAGATCTTGTCCCA+AGG + chr1_4:51668306-51668325 Msa0168770:CDS 45.0%
TTGTCCCAAGGAAAAGAGCT+TGG + chr1_4:51668318-51668337 Msa0168770:CDS 45.0%
TGTCCCAAGGAAAAGAGCTT+GGG + chr1_4:51668319-51668338 Msa0168770:CDS 45.0%
! AAGCCCAAGCTCTTTTCCTT+GGG - chr1_4:51668325-51668344 None:intergenic 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG - chr1_4:51668326-51668345 None:intergenic 45.0%
GTGAAAATGACCTGCATTGC+TGG + chr1_4:51668599-51668618 Msa0168770:three_prime_UTR 45.0%
TAGCCTCTGGTGGTAATAGG+TGG - chr1_4:51664980-51664999 None:intergenic 50.0%
! TGAAGGGTTGAGTTTGGTGG+TGG - chr1_4:51665211-51665230 None:intergenic 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG - chr1_4:51665248-51665267 None:intergenic 50.0%
! CAAACGGGTTCTCTCCACTT+CGG + chr1_4:51665253-51665272 Msa0168770:CDS 50.0%
CTTTCCAACTCAGCTGGGAA+AGG - chr1_4:51665321-51665340 None:intergenic 50.0%
GGGGGACTGTAAAGGTGAAA+TGG - chr1_4:51665442-51665461 None:intergenic 50.0%
TGAGAAAGGGGGGACTGTAA+AGG - chr1_4:51665450-51665469 None:intergenic 50.0%
CCTCACAAGTCCGTTTGGTT+GGG - chr1_4:51665861-51665880 None:intergenic 50.0%
ACCTCACAAGTCCGTTTGGT+TGG - chr1_4:51665862-51665881 None:intergenic 50.0%
! CATGTCAGGGTCAAAGCACT+TGG + chr1_4:51666007-51666026 Msa0168770:intron 50.0%
GTGACTCCATTCCAAGGTCA+CGG - chr1_4:51666245-51666264 None:intergenic 50.0%
ACGGAAGTGACTCCATTCCA+AGG - chr1_4:51666251-51666270 None:intergenic 50.0%
TCTACGGTTGTAGAGACTGC+AGG + chr1_4:51667384-51667403 Msa0168770:CDS 50.0%
TCAAGTTTGTGCCTTGTGGG+TGG + chr1_4:51667703-51667722 Msa0168770:intron 50.0%
! TGACCTGCTATGTTTTCCGG+CGG + chr1_4:51667762-51667781 Msa0168770:intron 50.0%
AGAGCCTAGATGTGCCTATG+AGG - chr1_4:51668166-51668185 None:intergenic 50.0%
CCTCTGGTGGTAATAGGTGG+TGG - chr1_4:51664977-51664996 None:intergenic 55.0%
CCACCACCTATTACCACCAG+AGG + chr1_4:51664974-51664993 Msa0168770:five_prime_UTR 55.0%
!! GGGTTGAGTTTGGTGGTGGT+GGG - chr1_4:51665207-51665226 None:intergenic 55.0%
!! AGGGTTGAGTTTGGTGGTGG+TGG - chr1_4:51665208-51665227 None:intergenic 55.0%
CGAAGTGGAGAGAACCCGTT+TGG - chr1_4:51665255-51665274 None:intergenic 55.0%
AGACCCTTTCCCAGCTGAGT+TGG + chr1_4:51665314-51665333 Msa0168770:CDS 55.0%
AGTTGTGTGTGGAGAGGGAG+AGG + chr1_4:51665678-51665697 Msa0168770:intron 55.0%
! CCCAACCAAACGGACTTGTG+AGG + chr1_4:51665858-51665877 Msa0168770:intron 55.0%
CCTCACCTCACAAGTCCGTT+TGG - chr1_4:51665866-51665885 None:intergenic 55.0%
! CCAAACGGACTTGTGAGGTG+AGG + chr1_4:51665863-51665882 Msa0168770:intron 55.0%
TGACCCTGACATGCTCCATG+TGG - chr1_4:51666000-51666019 None:intergenic 55.0%
ACTCTTCGAAGCCGTGACCT+TGG + chr1_4:51666231-51666250 Msa0168770:intron 55.0%
TCGAAGCCGTGACCTTGGAA+TGG + chr1_4:51666236-51666255 Msa0168770:intron 55.0%
TCTCCGCCGGAAAACATAGC+AGG - chr1_4:51667768-51667787 None:intergenic 55.0%
! ATCAGAGCTGGCACCGAGTT+TGG - chr1_4:51668024-51668043 None:intergenic 55.0%
AAACCTGGGCACCACTGTAG+TGG + chr1_4:51668132-51668151 Msa0168770:intron 55.0%
GCCTCCTCATAGGCACATCT+AGG + chr1_4:51668159-51668178 Msa0168770:intron 55.0%
GCCTAGATGTGCCTATGAGG+AGG - chr1_4:51668163-51668182 None:intergenic 55.0%
GTCGGTGTATCCAGCAATGC+AGG - chr1_4:51668612-51668631 None:intergenic 55.0%
TGGGCACCACTGTAGTGGCA+GGG + chr1_4:51668137-51668156 Msa0168770:intron 60.0%
TAGTGGCAGGGCCTCCTCAT+AGG + chr1_4:51668149-51668168 Msa0168770:intron 60.0%
CTGCCACTACAGTGGTGCCC+AGG - chr1_4:51668138-51668157 None:intergenic 65.0%
CTGGGCACCACTGTAGTGGC+AGG + chr1_4:51668136-51668155 Msa0168770:intron 65.0%
AGGAGGCCCTGCCACTACAG+TGG - chr1_4:51668146-51668165 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51664970 51668641 51664970 ID=Msa0168770;Name=Msa0168770
chr1_4 mRNA 51664970 51668641 51664970 ID=Msa0168770-mRNA-1;Parent=Msa0168770;Name=Msa0168770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|1|1|3|295|209
chr1_4 exon 51664970 51665497 51664970 ID=Msa0168770-mRNA-1:exon:15205;Parent=Msa0168770-mRNA-1
chr1_4 exon 51667282 51667474 51667282 ID=Msa0168770-mRNA-1:exon:15206;Parent=Msa0168770-mRNA-1
chr1_4 exon 51668255 51668641 51668255 ID=Msa0168770-mRNA-1:exon:15207;Parent=Msa0168770-mRNA-1
chr1_4 five_prime_UTR 51664970 51665152 51664970 ID=Msa0168770-mRNA-1:five_prime_utr;Parent=Msa0168770-mRNA-1
chr1_4 CDS 51665153 51665497 51665153 ID=Msa0168770-mRNA-1:cds;Parent=Msa0168770-mRNA-1
chr1_4 CDS 51667282 51667474 51667282 ID=Msa0168770-mRNA-1:cds;Parent=Msa0168770-mRNA-1
chr1_4 CDS 51668255 51668346 51668255 ID=Msa0168770-mRNA-1:cds;Parent=Msa0168770-mRNA-1
chr1_4 three_prime_UTR 51668347 51668641 51668347 ID=Msa0168770-mRNA-1:three_prime_utr;Parent=Msa0168770-mRNA-1
Gene Sequence

>Msa0168770

ATGGCTACAACCAAGCTTGTATTGTTATCATTCCCTGTGGTACATGTAAATCCCACCACCACCAAACTCAACCCTTCATTCAATTTTCAGAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTGGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAGTTTGGAGAGAAAGTTATAGGTAGTTATAACACTGAACACAAAATCCTTATCCCAAATATCTCTGCTCTTTCTCTTTCTCAACAAGAGTGTACCCCCATTTCACCTTTACAGTCCCCCCTTTCTCAAGATGATGCTAACCAGCTTATAAGAAAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGCGGAGTTGAACTCATTAACAGAATCTCTACGGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTCAGAGCAGAACTATGGACAACATCCATTGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAGACATCAGATCTTGTCCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>Msa0168770

MATTKLVLLSFPVVHVNPTTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQSPLSQDDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKCGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA*