AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0498830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498830 MtrunA17_Chr3g0096481 95.841 529 22 0 1 529 1 529 0.0 1053
Msa0498830 MtrunA17_Chr5g0443341 70.577 520 146 3 11 527 16 531 0.0 750
Msa0498830 MtrunA17_Chr3g0096591 81.685 273 48 1 253 525 1 271 1.04e-164 468
Msa0498830 MtrunA17_Chr1g0170421 46.559 494 252 6 44 528 39 529 5.35e-153 450
Msa0498830 MtrunA17_Chr4g0005991 47.590 498 236 9 46 529 7 493 8.69e-153 446
Msa0498830 MtrunA17_Chr7g0241831 48.566 488 227 8 55 529 19 495 1.06e-152 446
Msa0498830 MtrunA17_Chr5g0425071 48.233 481 229 10 59 529 15 485 4.98e-151 441
Msa0498830 MtrunA17_Chr3g0096581 83.468 248 36 1 2 244 1 248 2.40e-150 430
Msa0498830 MtrunA17_Chr1g0194391 46.228 517 249 12 26 529 33 533 1.04e-143 424
Msa0498830 MtrunA17_Chr8g0348781 43.400 500 255 10 45 526 9 498 2.87e-138 409
Msa0498830 MtrunA17_Chr5g0435581 43.659 481 248 9 60 526 2 473 9.69e-131 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498830 AT1G06520.1 52.830 583 212 14 4 526 6 585 0.0 573
Msa0498830 AT2G38110.1 46.800 500 239 10 46 529 10 498 9.74e-147 431
Msa0498830 AT4G01950.1 46.939 490 244 10 48 527 36 519 1.13e-146 431
Msa0498830 AT4G01950.2 46.939 490 244 10 48 527 64 547 7.32e-146 431
Msa0498830 AT1G02390.1 46.170 483 245 9 59 528 50 530 9.45e-141 417
Msa0498830 AT1G01610.1 44.016 493 258 9 45 526 9 494 1.77e-139 412
Msa0498830 AT3G11430.1 45.946 481 243 11 56 525 7 481 5.02e-134 399
Msa0498830 AT4G00400.1 43.030 495 265 8 42 526 6 493 8.04e-133 395
Msa0498830 AT5G06090.1 44.398 482 245 11 59 526 8 480 2.17e-130 389
Msa0498830 AT3G11325.1 41.697 271 122 3 256 526 136 370 1.29e-65 218
Msa0498830 AT3G11325.1 40.952 105 58 2 70 170 6 110 1.31e-14 76.3
Msa0498830 AT3G11325.2 41.697 271 122 3 256 526 139 373 1.60e-65 218
Msa0498830 AT3G11325.2 40.952 105 58 2 70 170 9 113 1.44e-14 76.3

Find 97 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACTGTTTATGATAAT+TGG 0.098443 3_4:+36125275 None:intergenic
GTTAAACTCATTGTCTTTAT+AGG 0.150817 3_4:+36122130 None:intergenic
ACTTCACTGGTTTGATTTCT+AGG 0.170723 3_4:-36124655 Msa0498830:CDS
AGTGCTCTCATGGATTATTT+TGG 0.183297 3_4:-36124611 Msa0498830:CDS
CCAGCACAAGTGAGTTCTTT+TGG 0.209499 3_4:+36121833 None:intergenic
CTTCCATCATGAAATATTAA+TGG 0.220853 3_4:+36122478 None:intergenic
AAGAGAGTTATGTATCTTCT+TGG 0.251257 3_4:+36121642 None:intergenic
AGAATGAATGGTTCCTTAAT+AGG 0.296318 3_4:+36125026 None:intergenic
GGATATAGAAGGCCTGATTT+AGG 0.310254 3_4:-36124590 Msa0498830:CDS
AAAAGAGTTGGGTGATGCTT+TGG 0.317799 3_4:-36121774 Msa0498830:CDS
AGAAGGCCTGATTTAGGAAT+TGG 0.322699 3_4:-36124584 Msa0498830:CDS
TCATGAAATATTAATGGCTT+TGG 0.325007 3_4:+36122484 None:intergenic
ACATTCATGATATCCTATTA+AGG 0.327821 3_4:-36125039 Msa0498830:CDS
GGACAATAGTTTATTACAAA+TGG 0.339581 3_4:-36122363 Msa0498830:CDS
CACTTGTGTGCCTAGAGTTA+TGG 0.347773 3_4:-36124750 Msa0498830:CDS
TCAATTTATAGATTATTTCT+TGG 0.350275 3_4:-36122385 Msa0498830:CDS
CATGGAGAATCTTAACCTTA+AGG 0.353285 3_4:-36124813 Msa0498830:CDS
ATTGATAATGGAATTGCAAT+TGG 0.355353 3_4:+36122403 None:intergenic
AATAATCTATAAATTGATAA+TGG 0.356165 3_4:+36122391 None:intergenic
TCCCTACAAGTTGTTCCTTC+AGG 0.358949 3_4:+36122040 None:intergenic
CATAACTCTCTTCAACTGTT+TGG 0.362599 3_4:-36121631 Msa0498830:three_prime_UTR
GATAAATATATGATGTTAGC+TGG 0.365163 3_4:-36121722 Msa0498830:CDS
ATTTACTGTTTATGATAATT+GGG 0.369243 3_4:+36125276 None:intergenic
CAATTTATAGATTATTTCTT+GGG 0.369337 3_4:-36122384 Msa0498830:CDS
GAATGTCACAAACAAGTGTT+TGG 0.370761 3_4:+36125056 None:intergenic
AGCTAGTGGATTAAAATGTT+TGG 0.371794 3_4:-36121918 Msa0498830:CDS
AAGGCAACTAGCATGAAATA+AGG 0.373236 3_4:+36125001 None:intergenic
AAAGAGTTGGGTGATGCTTT+GGG 0.380680 3_4:-36121773 Msa0498830:CDS
AAAAGAAGAAGTGAAAATTA+TGG 0.394997 3_4:-36121682 Msa0498830:exon
GACAATAGTTTATTACAAAT+GGG 0.398640 3_4:-36122362 Msa0498830:CDS
TTCATGCTAGTTGCCTTTGA+AGG 0.401979 3_4:-36124995 Msa0498830:CDS
TAGGCATGGTTTGGTTGATA+AGG 0.411704 3_4:-36124636 Msa0498830:CDS
TATGGTGGAAGGGTTTCTTA+AGG 0.415468 3_4:-36124732 Msa0498830:CDS
TCCCTTGGCATGATTGAACT+TGG 0.423538 3_4:+36122514 None:intergenic
AGATTCTCCATGTAAAACTT+TGG 0.427361 3_4:+36124824 None:intergenic
GTGCTTCCAATTCCTAAATC+AGG 0.432690 3_4:+36124578 None:intergenic
TAGTATTGAAGTACTTGAAA+AGG 0.439082 3_4:-36121858 Msa0498830:CDS
AAATCACAATTCAAAATACT+AGG 0.439229 3_4:+36125094 None:intergenic
TTTGATTTCTAGGCATGGTT+TGG 0.440519 3_4:-36124645 Msa0498830:CDS
CAATCACATGGTAAAGCCTT+AGG 0.442507 3_4:+36125212 None:intergenic
TTTCTTAAGGAATATTTGAA+TGG 0.451191 3_4:-36124719 Msa0498830:CDS
TAGAGAGTTGATGAAGGTGT+AGG 0.464698 3_4:+36122442 None:intergenic
AGAGAGTTGATGAAGGTGTA+GGG 0.474568 3_4:+36122443 None:intergenic
ACAAAACCTCACAAGCCTTA+AGG 0.479431 3_4:+36124798 None:intergenic
TTTGAGAAAACCTTTGACTA+CGG 0.479760 3_4:-36122191 Msa0498830:CDS
TGAAATAAGGAAAGAATGAA+TGG 0.486593 3_4:+36125014 None:intergenic
ACTGTTGGATGCTACTTCAC+TGG 0.486698 3_4:-36124668 Msa0498830:CDS
ATATAATTAGCCACTTCAAA+AGG 0.492994 3_4:+36121800 None:intergenic
TAGGACATGAACAAAGTAAG+AGG 0.498321 3_4:+36124951 None:intergenic
ACTGGTTTGATTTCTAGGCA+TGG 0.499174 3_4:-36124650 Msa0498830:CDS
CCAAAAGAACTCACTTGTGC+TGG 0.501281 3_4:-36121833 Msa0498830:CDS
GTCCTGAAGGAACAACTTGT+AGG 0.502469 3_4:-36122042 Msa0498830:CDS
GAACTAAATCTCAATAGATA+AGG 0.509333 3_4:+36122016 None:intergenic
TGATAAGGATAGTGCTCTCA+TGG 0.519997 3_4:-36124621 Msa0498830:CDS
AAAGAACTCACTTGTGCTGG+TGG 0.522091 3_4:-36121830 Msa0498830:CDS
AAAATACTAGGAAAGGTTGA+AGG 0.524012 3_4:+36125106 None:intergenic
AATGTCACAAACAAGTGTTT+GGG 0.534593 3_4:+36125057 None:intergenic
ATAAATATATGATGTTAGCT+GGG 0.539552 3_4:-36121721 Msa0498830:CDS
GTGCCTAGAGTTATGGTGGA+AGG 0.542356 3_4:-36124743 Msa0498830:CDS
AAGCCATTAATATTTCATGA+TGG 0.544073 3_4:-36122481 Msa0498830:CDS
CTTGCATTAGTAGCATATAG+TGG 0.547683 3_4:-36122337 Msa0498830:CDS
TCTTAACCTTAAGGCTTGTG+AGG 0.549494 3_4:-36124804 Msa0498830:CDS
TAAAATGCTACCACCTTCAA+AGG 0.551003 3_4:+36124982 None:intergenic
ACAATTCAAAATACTAGGAA+AGG 0.557117 3_4:+36125099 None:intergenic
TCCTGAAGGAACAACTTGTA+GGG 0.557385 3_4:-36122041 Msa0498830:CDS
ATGCTAGTTGCCTTTGAAGG+TGG 0.557422 3_4:-36124992 Msa0498830:CDS
GCTACAGAGTTACACACTGT+TGG 0.560729 3_4:-36124683 Msa0498830:CDS
CTATAAGTTACCGTAGTCAA+AGG 0.562718 3_4:+36122181 None:intergenic
TGCCTAGAGTTATGGTGGAA+GGG 0.568356 3_4:-36124742 Msa0498830:CDS
ATGATGTTAGCTGGGAATGA+AGG 0.571083 3_4:-36121713 Msa0498830:CDS
AGGACATGGAAATGATTGCA+AGG 0.571708 3_4:-36124856 Msa0498830:CDS
GGTATAAATATAAATATCAA+AGG 0.574929 3_4:-36122316 Msa0498830:CDS
GTCCAAGTTCAATCATGCCA+AGG 0.578416 3_4:-36122516 Msa0498830:CDS
TGCTGATGAGATTGTTCCTG+TGG 0.580570 3_4:-36121978 Msa0498830:CDS
ATGCAAAGGTTGTTAAGTGA+AGG 0.581573 3_4:-36122079 Msa0498830:CDS
TCCAAGTTCAATCATGCCAA+GGG 0.585347 3_4:-36122515 Msa0498830:CDS
TGGACTTAAAATAAAGGACA+TGG 0.586187 3_4:-36124870 Msa0498830:CDS
GATTTAGTTGTGTGTCCTGA+AGG 0.591518 3_4:-36122055 Msa0498830:CDS
ACATTAGCATTCATAGCCAC+AGG 0.592352 3_4:+36121962 None:intergenic
GGACATGGAAATGATTGCAA+GGG 0.595734 3_4:-36124855 Msa0498830:CDS
AGTACTTCAATACTATAACT+AGG 0.596445 3_4:+36121866 None:intergenic
TCAATACTATAACTAGGCCA+TGG 0.601201 3_4:+36121872 None:intergenic
TTGAGTGTACAAATATTACA+AGG 0.604181 3_4:-36121748 Msa0498830:CDS
AACCCTTCCACCATAACTCT+AGG 0.605896 3_4:+36124740 None:intergenic
ACAATAGTTTATTACAAATG+GGG 0.618107 3_4:-36122361 Msa0498830:CDS
CAACTCTCTACATGTTCATG+TGG 0.618107 3_4:-36122429 Msa0498830:CDS
TGAGAGAAACTTAAATACAA+TGG 0.621277 3_4:-36125251 Msa0498830:exon
AAGATAGAGAAACAATGCAA+AGG 0.634514 3_4:-36122093 Msa0498830:CDS
GTGTACAAATATTACAAGGA+GGG 0.638648 3_4:-36121744 Msa0498830:CDS
ATAATGATAGGAAGCTTATG+TGG 0.639396 3_4:-36122554 Msa0498830:intron
TTGTGTGCCTAGAGTTATGG+TGG 0.640186 3_4:-36124747 Msa0498830:CDS
TAAAGACAATGAGTTTAACA+AGG 0.642663 3_4:-36122126 Msa0498830:CDS
TACTCTATGTTTGTACACAT+AGG 0.654259 3_4:-36122246 Msa0498830:CDS
AGTGTACAAATATTACAAGG+AGG 0.666630 3_4:-36121745 Msa0498830:CDS
AAAGACAATGAGTTTAACAA+GGG 0.667075 3_4:-36122125 Msa0498830:CDS
AACATGTAGAGAGTTGATGA+AGG 0.691265 3_4:+36122436 None:intergenic
AACATGATTTAACAATCACA+TGG 0.695379 3_4:+36125200 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATACTTTTAAAAAATTTA+TGG + chr3_4:36122444-36122463 None:intergenic 10.0%
!!! AAATTTTTTAAAAGTATCTT+TGG - chr3_4:36122445-36122464 Msa0498830:CDS 10.0%
!! TTAATATGGAATAATTAATA+TGG + chr3_4:36124310-36124329 None:intergenic 10.0%
!! AATAATCTATAAATTGATAA+TGG + chr3_4:36124522-36124541 None:intergenic 10.0%
!!! TTGTTATTGAATTTTTTTTA+GGG + chr3_4:36124635-36124654 None:intergenic 10.0%
!!! TTTGTTATTGAATTTTTTTT+AGG + chr3_4:36124636-36124655 None:intergenic 10.0%
!! AAAAATTCAATAACAAATAA+AGG - chr3_4:36124639-36124658 Msa0498830:CDS 10.0%
!! ATTTACTGTTTATGATAATT+GGG + chr3_4:36121637-36121656 None:intergenic 15.0%
!! TATTTACTGTTTATGATAAT+TGG + chr3_4:36121638-36121657 None:intergenic 15.0%
!!! TATTTTGAATTGTGATTTAA+AGG - chr3_4:36121821-36121840 Msa0498830:CDS 15.0%
!!! ATTTTGAATTGTGATTTAAA+GGG - chr3_4:36121822-36121841 Msa0498830:CDS 15.0%
!!! TTTTAGCTATATTATATTCT+TGG - chr3_4:36122414-36122433 Msa0498830:CDS 15.0%
!! ATTAATTGTATACATTCTAT+AGG - chr3_4:36122494-36122513 Msa0498830:CDS 15.0%
!!! AAGTTTTTATTTTTCTTGAT+AGG - chr3_4:36122521-36122540 Msa0498830:CDS 15.0%
!! GGTAGTTAAAATTTAATAAT+GGG - chr3_4:36123298-36123317 Msa0498830:intron 15.0%
!! AATTACTATTGATCATTAAT+CGG - chr3_4:36123645-36123664 Msa0498830:intron 15.0%
!! AATATGGAAAATGAAATTAA+AGG + chr3_4:36124294-36124313 None:intergenic 15.0%
!! CTATCATTATCATATATTTA+TGG + chr3_4:36124346-36124365 None:intergenic 15.0%
!!! CATAAATATATGATAATGAT+AGG - chr3_4:36124344-36124363 Msa0498830:intron 15.0%
!!! TCAATTTATAGATTATTTCT+TGG - chr3_4:36124525-36124544 Msa0498830:intron 15.0%
!!! CAATTTATAGATTATTTCTT+GGG - chr3_4:36124526-36124545 Msa0498830:intron 15.0%
!! GGTATAAATATAAATATCAA+AGG - chr3_4:36124594-36124613 Msa0498830:CDS 15.0%
!! TAATTATATACAAAAAGAGT+TGG - chr3_4:36125124-36125143 Msa0498830:CDS 15.0%
!! AATTATATACAAAAAGAGTT+GGG - chr3_4:36125125-36125144 Msa0498830:CDS 15.0%
!! AAATCACAATTCAAAATACT+AGG + chr3_4:36121819-36121838 None:intergenic 20.0%
!!! TTTTGAATTGTGATTTAAAG+GGG - chr3_4:36121823-36121842 Msa0498830:CDS 20.0%
!!! TTTTTGTGGACTTAAAATAA+AGG - chr3_4:36122034-36122053 Msa0498830:CDS 20.0%
!! TTTCTTAAGGAATATTTGAA+TGG - chr3_4:36122191-36122210 Msa0498830:CDS 20.0%
!!! TCATTTTATCTCTTATTGTA+AGG - chr3_4:36122370-36122389 Msa0498830:CDS 20.0%
!! TAGTAAGTTCTTAAAATGAA+AGG - chr3_4:36122550-36122569 Msa0498830:intron 20.0%
!!! AATATTTTACATGTGTTTCT+AGG - chr3_4:36122797-36122816 Msa0498830:intron 20.0%
!!! CAATTCAAATTTAAGTTTGT+CGG + chr3_4:36123106-36123125 None:intergenic 20.0%
!! CAAACTTAAATTTGAATTGT+TGG - chr3_4:36123107-36123126 Msa0498830:intron 20.0%
!! ATAAATATGTTCCGTATAAA+TGG - chr3_4:36123133-36123152 Msa0498830:intron 20.0%
!! GGGTAGTTAAAATTTAATAA+TGG - chr3_4:36123297-36123316 Msa0498830:intron 20.0%
!! ATAAAAGTAGGAAAATTCTA+TGG - chr3_4:36123323-36123342 Msa0498830:intron 20.0%
!!! TTAATGGACAATACTTTTAT+GGG + chr3_4:36123758-36123777 None:intergenic 20.0%
!!! TTTAATGGACAATACTTTTA+TGG + chr3_4:36123759-36123778 None:intergenic 20.0%
!! CATTAAACTCTCATTAATAT+CGG - chr3_4:36123772-36123791 Msa0498830:intron 20.0%
!! TTGTCAAAATATATGTACAA+AGG - chr3_4:36123914-36123933 Msa0498830:intron 20.0%
!! TTGTCAAAAAAAGTAAAATG+TGG - chr3_4:36124151-36124170 Msa0498830:intron 20.0%
!!! TGTACGTTTTCATTTATTTT+TGG - chr3_4:36124188-36124207 Msa0498830:intron 20.0%
!!! TTTTGGCATATGATTATAAT+AGG - chr3_4:36124205-36124224 Msa0498830:intron 20.0%
!! ATATATTTATGGAGTTAGAT+GGG + chr3_4:36124335-36124354 None:intergenic 20.0%
!! GACAATAGTTTATTACAAAT+GGG - chr3_4:36124548-36124567 Msa0498830:CDS 20.0%
!! ACAATAGTTTATTACAAATG+GGG - chr3_4:36124549-36124568 Msa0498830:CDS 20.0%
!! ATAAATATATGATGTTAGCT+GGG - chr3_4:36125189-36125208 Msa0498830:CDS 20.0%
!! AAAAGAAGAAGTGAAAATTA+TGG - chr3_4:36125228-36125247 Msa0498830:CDS 20.0%
! TGAGAGAAACTTAAATACAA+TGG - chr3_4:36121659-36121678 Msa0498830:three_prime_UTR 25.0%
! AACATGATTTAACAATCACA+TGG + chr3_4:36121713-36121732 None:intergenic 25.0%
! ACAATTCAAAATACTAGGAA+AGG + chr3_4:36121814-36121833 None:intergenic 25.0%
! ACATTCATGATATCCTATTA+AGG - chr3_4:36121871-36121890 Msa0498830:CDS 25.0%
! TGAAATAAGGAAAGAATGAA+TGG + chr3_4:36121899-36121918 None:intergenic 25.0%
!!! ATGATCTTCATTACTTTTTG+TGG - chr3_4:36122020-36122039 Msa0498830:CDS 25.0%
!! AGTTTTACCAAAGTTTTACA+TGG - chr3_4:36122079-36122098 Msa0498830:CDS 25.0%
!!! TGGATTATTTTGGATATAGA+AGG - chr3_4:36122309-36122328 Msa0498830:CDS 25.0%
!!! TTAAAAGTATCTTTGGATAG+AGG - chr3_4:36122452-36122471 Msa0498830:CDS 25.0%
!!! TTATTTTTCTTGATAGGTCT+AGG - chr3_4:36122527-36122546 Msa0498830:CDS 25.0%
! AGTTCTTAAAATGAAAGGAA+TGG - chr3_4:36122555-36122574 Msa0498830:intron 25.0%
! GCTCAAATCAAATGTTTATA+GGG + chr3_4:36122623-36122642 None:intergenic 25.0%
! AAAATGTTCATATCATGAGA+TGG - chr3_4:36122646-36122665 Msa0498830:intron 25.0%
! AGAAACATTCAATGTCAAAA+AGG + chr3_4:36122675-36122694 None:intergenic 25.0%
! TGACTTATAACTAGAAAACT+GGG + chr3_4:36122747-36122766 None:intergenic 25.0%
! TTGTAATAACTTACAGTTAC+AGG + chr3_4:36122979-36122998 None:intergenic 25.0%
! AAACACAAGTACCATTTATA+CGG + chr3_4:36123147-36123166 None:intergenic 25.0%
!! ATTTTCATGAAGGAAAATAG+TGG + chr3_4:36123238-36123257 None:intergenic 25.0%
!!! GTTGATTTTGATTTTCATGA+AGG + chr3_4:36123248-36123267 None:intergenic 25.0%
!! TAATAATGGGACATAAAAGT+AGG - chr3_4:36123311-36123330 Msa0498830:intron 25.0%
! CGATATTAATGAGAGTTTAA+TGG + chr3_4:36123774-36123793 None:intergenic 25.0%
!! TTTTTAAACCCACAAGTATA+AGG - chr3_4:36124083-36124102 Msa0498830:intron 25.0%
! GTAGTTAGTTAGATAAGATA+AGG + chr3_4:36124250-36124269 None:intergenic 25.0%
! CATATATTTATGGAGTTAGA+TGG + chr3_4:36124336-36124355 None:intergenic 25.0%
! TCATGAAATATTAATGGCTT+TGG + chr3_4:36124429-36124448 None:intergenic 25.0%
! AAGCCATTAATATTTCATGA+TGG - chr3_4:36124429-36124448 Msa0498830:intron 25.0%
! CTTCCATCATGAAATATTAA+TGG + chr3_4:36124435-36124454 None:intergenic 25.0%
!!! ATTGATAATGGAATTGCAAT+TGG + chr3_4:36124510-36124529 None:intergenic 25.0%
! GGACAATAGTTTATTACAAA+TGG - chr3_4:36124547-36124566 Msa0498830:CDS 25.0%
! GTTAAACTCATTGTCTTTAT+AGG + chr3_4:36124783-36124802 None:intergenic 25.0%
! TAAAGACAATGAGTTTAACA+AGG - chr3_4:36124784-36124803 Msa0498830:CDS 25.0%
! AAAGACAATGAGTTTAACAA+GGG - chr3_4:36124785-36124804 Msa0498830:CDS 25.0%
! GAACTAAATCTCAATAGATA+AGG + chr3_4:36124897-36124916 None:intergenic 25.0%
!!! TTCTATTTTTGATGAATCCA+TGG - chr3_4:36125021-36125040 Msa0498830:CDS 25.0%
! AGTACTTCAATACTATAACT+AGG + chr3_4:36125047-36125066 None:intergenic 25.0%
!! TAGTATTGAAGTACTTGAAA+AGG - chr3_4:36125052-36125071 Msa0498830:CDS 25.0%
! ATATAATTAGCCACTTCAAA+AGG + chr3_4:36125113-36125132 None:intergenic 25.0%
! TTGAGTGTACAAATATTACA+AGG - chr3_4:36125162-36125181 Msa0498830:CDS 25.0%
! GATAAATATATGATGTTAGC+TGG - chr3_4:36125188-36125207 Msa0498830:CDS 25.0%
! TGTTTCTTTTAGTACTCCTA+AGG - chr3_4:36121682-36121701 Msa0498830:exon 30.0%
AAAATACTAGGAAAGGTTGA+AGG + chr3_4:36121807-36121826 None:intergenic 30.0%
AATGTCACAAACAAGTGTTT+GGG + chr3_4:36121856-36121875 None:intergenic 30.0%
AGAATGAATGGTTCCTTAAT+AGG + chr3_4:36121887-36121906 None:intergenic 30.0%
! TAGCTCAAAAAGCATAACAT+AGG + chr3_4:36121981-36122000 None:intergenic 30.0%
TGGACTTAAAATAAAGGACA+TGG - chr3_4:36122040-36122059 Msa0498830:CDS 30.0%
AGATTCTCCATGTAAAACTT+TGG + chr3_4:36122089-36122108 None:intergenic 30.0%
TTTGGATAGAGGAAAATGAA+AGG - chr3_4:36122463-36122482 Msa0498830:CDS 30.0%
GGCTCAAATCAAATGTTTAT+AGG + chr3_4:36122624-36122643 None:intergenic 30.0%
! CTCATGATATGAACATTTTC+TGG + chr3_4:36122645-36122664 None:intergenic 30.0%
GCAGTAGTTAAACTACAATT+GGG + chr3_4:36122725-36122744 None:intergenic 30.0%
CTGACTTATAACTAGAAAAC+TGG + chr3_4:36122748-36122767 None:intergenic 30.0%
!!! GTTTTCTAGTTATAAGTCAG+CGG - chr3_4:36122748-36122767 Msa0498830:intron 30.0%
AAATATTAAAATGTCCCCAG+CGG + chr3_4:36122784-36122803 None:intergenic 30.0%
TTTCATATCATGATGACTCA+TGG - chr3_4:36122845-36122864 Msa0498830:intron 30.0%
TAATAACTTACAGTTACAGG+TGG + chr3_4:36122976-36122995 None:intergenic 30.0%
TTGTCAATACAAGTGAAACT+AGG + chr3_4:36123013-36123032 None:intergenic 30.0%
! ACTTGTATTGACAAGTTTAG+TGG - chr3_4:36123019-36123038 Msa0498830:intron 30.0%
TCTATGCATATCCAATGAAT+CGG + chr3_4:36123177-36123196 None:intergenic 30.0%
! GATGAATTGATGACACTATA+TGG + chr3_4:36123450-36123469 None:intergenic 30.0%
CTTAAGTGTTACACTTTGTA+GGG + chr3_4:36123529-36123548 None:intergenic 30.0%
TCTTAAGTGTTACACTTTGT+AGG + chr3_4:36123530-36123549 None:intergenic 30.0%
!!! AGTCAGGAAACTGATTTTTT+TGG + chr3_4:36123721-36123740 None:intergenic 30.0%
TATGTACAAAGGACTAAATG+TGG - chr3_4:36123925-36123944 Msa0498830:intron 30.0%
!!! TACCCCACTTTTTTTTTTTG+TGG + chr3_4:36124025-36124044 None:intergenic 30.0%
!! TATTTTTGCTTGCATCATCT+GGG + chr3_4:36124109-36124128 None:intergenic 30.0%
!!! TTATTTTTGCTTGCATCATC+TGG + chr3_4:36124110-36124129 None:intergenic 30.0%
AAATGAAAACGTACAGCTTT+GGG + chr3_4:36124183-36124202 None:intergenic 30.0%
TAAATGAAAACGTACAGCTT+TGG + chr3_4:36124184-36124203 None:intergenic 30.0%
GAGTTAGATGGGAATTAATA+TGG + chr3_4:36124324-36124343 None:intergenic 30.0%
ATAATGATAGGAAGCTTATG+TGG - chr3_4:36124356-36124375 Msa0498830:intron 30.0%
TACTCTATGTTTGTACACAT+AGG - chr3_4:36124664-36124683 Msa0498830:CDS 30.0%
TTTGAGAAAACCTTTGACTA+CGG - chr3_4:36124719-36124738 Msa0498830:CDS 30.0%
AAGATAGAGAAACAATGCAA+AGG - chr3_4:36124817-36124836 Msa0498830:CDS 30.0%
! GCTAATGTGAGTATGTTTTA+TGG - chr3_4:36124963-36124982 Msa0498830:CDS 30.0%
!! AGCTAGTGGATTAAAATGTT+TGG - chr3_4:36124992-36125011 Msa0498830:CDS 30.0%
AGTGTACAAATATTACAAGG+AGG - chr3_4:36125165-36125184 Msa0498830:CDS 30.0%
GTGTACAAATATTACAAGGA+GGG - chr3_4:36125166-36125185 Msa0498830:CDS 30.0%
AAGAGAGTTATGTATCTTCT+TGG + chr3_4:36125271-36125290 None:intergenic 30.0%
GAATGTCACAAACAAGTGTT+TGG + chr3_4:36121857-36121876 None:intergenic 35.0%
AAGGCAACTAGCATGAAATA+AGG + chr3_4:36121912-36121931 None:intergenic 35.0%
TAAAATGCTACCACCTTCAA+AGG + chr3_4:36121931-36121950 None:intergenic 35.0%
TAGGACATGAACAAAGTAAG+AGG + chr3_4:36121962-36121981 None:intergenic 35.0%
CATGGAGAATCTTAACCTTA+AGG - chr3_4:36122097-36122116 Msa0498830:CDS 35.0%
!! ACTTCACTGGTTTGATTTCT+AGG - chr3_4:36122255-36122274 Msa0498830:CDS 35.0%
! TTTGATTTCTAGGCATGGTT+TGG - chr3_4:36122265-36122284 Msa0498830:CDS 35.0%
!! AGTGCTCTCATGGATTATTT+TGG - chr3_4:36122299-36122318 Msa0498830:CDS 35.0%
GAGGAAAATGAAAGGAAGTT+AGG - chr3_4:36122471-36122490 Msa0498830:CDS 35.0%
GGCAGTAGTTAAACTACAAT+TGG + chr3_4:36122726-36122745 None:intergenic 35.0%
TTACAGTTACAGGTGGTTAA+GGG + chr3_4:36122969-36122988 None:intergenic 35.0%
! TTTAAGTTTGTCGGTACACA+AGG + chr3_4:36123097-36123116 None:intergenic 35.0%
!! GTTTTCCTTAACCGATTCAT+TGG - chr3_4:36123163-36123182 Msa0498830:intron 35.0%
CATATCCAATGAATCGGTTA+AGG + chr3_4:36123171-36123190 None:intergenic 35.0%
ATATCACCTCACTCATGTAT+GGG - chr3_4:36123277-36123296 Msa0498830:intron 35.0%
! AGTCATGAGAATGACTTTTC+TGG - chr3_4:36123349-36123368 Msa0498830:intron 35.0%
ACACCTCACTATTTGTATAG+TGG - chr3_4:36123409-36123428 Msa0498830:intron 35.0%
ATGCCACTATACAAATAGTG+AGG + chr3_4:36123415-36123434 None:intergenic 35.0%
TGTTACACTTGAAACAAGGT+AGG + chr3_4:36123506-36123525 None:intergenic 35.0%
TAGTAATGCTTGCAACATCT+TGG + chr3_4:36123621-36123640 None:intergenic 35.0%
! TACTTTTATGGGAGCTTCTA+TGG + chr3_4:36123747-36123766 None:intergenic 35.0%
AAAAAGTGATCCAAGCGAAA+TGG - chr3_4:36123886-36123905 Msa0498830:intron 35.0%
AAAAGTGATCCAAGCGAAAT+GGG - chr3_4:36123887-36123906 Msa0498830:intron 35.0%
!!! ACTTTTTTTTTTTGTGGCCG+TGG + chr3_4:36124019-36124038 None:intergenic 35.0%
ACGGCCACAAAAAAAAAAAG+TGG - chr3_4:36124018-36124037 Msa0498830:intron 35.0%
CGGCCACAAAAAAAAAAAGT+GGG - chr3_4:36124019-36124038 Msa0498830:intron 35.0%
GGCCACAAAAAAAAAAAGTG+GGG - chr3_4:36124020-36124039 Msa0498830:intron 35.0%
!! AACATGTAGAGAGTTGATGA+AGG + chr3_4:36124477-36124496 None:intergenic 35.0%
CTTGCATTAGTAGCATATAG+TGG - chr3_4:36124573-36124592 Msa0498830:CDS 35.0%
AAACTCAGGCTAAGAAAAAC+AGG + chr3_4:36124702-36124721 None:intergenic 35.0%
! TCAAAGGTTTTCTCAAACTC+AGG + chr3_4:36124716-36124735 None:intergenic 35.0%
CTATAAGTTACCGTAGTCAA+AGG + chr3_4:36124732-36124751 None:intergenic 35.0%
ATGCAAAGGTTGTTAAGTGA+AGG - chr3_4:36124831-36124850 Msa0498830:CDS 35.0%
! TTTTATGGTACAACAGCTAG+TGG - chr3_4:36124978-36124997 Msa0498830:CDS 35.0%
TCAATACTATAACTAGGCCA+TGG + chr3_4:36125041-36125060 None:intergenic 35.0%
CATAACTCTCTTCAACTGTT+TGG - chr3_4:36125279-36125298 Msa0498830:five_prime_UTR 35.0%
CAATCACATGGTAAAGCCTT+AGG + chr3_4:36121701-36121720 None:intergenic 40.0%
TTCATGCTAGTTGCCTTTGA+AGG - chr3_4:36121915-36121934 Msa0498830:CDS 40.0%
AGGACATGGAAATGATTGCA+AGG - chr3_4:36122054-36122073 Msa0498830:CDS 40.0%
GGACATGGAAATGATTGCAA+GGG - chr3_4:36122055-36122074 Msa0498830:CDS 40.0%
TCTTAACCTTAAGGCTTGTG+AGG - chr3_4:36122106-36122125 Msa0498830:CDS 40.0%
ACAAAACCTCACAAGCCTTA+AGG + chr3_4:36122115-36122134 None:intergenic 40.0%
!! TGTGAGGTTTTGTCTTCAGT+AGG - chr3_4:36122122-36122141 Msa0498830:CDS 40.0%
!! GTGAGGTTTTGTCTTCAGTA+GGG - chr3_4:36122123-36122142 Msa0498830:CDS 40.0%
! TATGGTGGAAGGGTTTCTTA+AGG - chr3_4:36122178-36122197 Msa0498830:CDS 40.0%
!! ACTGGTTTGATTTCTAGGCA+TGG - chr3_4:36122260-36122279 Msa0498830:CDS 40.0%
!! TAGGCATGGTTTGGTTGATA+AGG - chr3_4:36122274-36122293 Msa0498830:CDS 40.0%
TGATAAGGATAGTGCTCTCA+TGG - chr3_4:36122289-36122308 Msa0498830:CDS 40.0%
GGATATAGAAGGCCTGATTT+AGG - chr3_4:36122320-36122339 Msa0498830:CDS 40.0%
AGAAGGCCTGATTTAGGAAT+TGG - chr3_4:36122326-36122345 Msa0498830:CDS 40.0%
GTGCTTCCAATTCCTAAATC+AGG + chr3_4:36122335-36122354 None:intergenic 40.0%
GGTAAGAAGTTGAGATGTAG+GGG + chr3_4:36122917-36122936 None:intergenic 40.0%
GGGTAAGAAGTTGAGATGTA+GGG + chr3_4:36122918-36122937 None:intergenic 40.0%
CAGGTGGTTAAGGGTAAAAT+GGG + chr3_4:36122960-36122979 None:intergenic 40.0%
ACAGGTGGTTAAGGGTAAAA+TGG + chr3_4:36122961-36122980 None:intergenic 40.0%
CTTACAGTTACAGGTGGTTA+AGG + chr3_4:36122970-36122989 None:intergenic 40.0%
CATATCACCTCACTCATGTA+TGG - chr3_4:36123276-36123295 Msa0498830:intron 40.0%
TAACTACCCATACATGAGTG+AGG + chr3_4:36123286-36123305 None:intergenic 40.0%
! AGGGTGTTACACTTGAAACA+AGG + chr3_4:36123510-36123529 None:intergenic 40.0%
AAAGTGATCCAAGCGAAATG+GGG - chr3_4:36123888-36123907 Msa0498830:intron 40.0%
GTACAAAGGACTAAATGTGG+AGG - chr3_4:36123928-36123947 Msa0498830:intron 40.0%
TTCTATGAGTTAAGCTCACG+AGG + chr3_4:36123961-36123980 None:intergenic 40.0%
TCCAAGTTCAATCATGCCAA+GGG - chr3_4:36124395-36124414 Msa0498830:intron 40.0%
!! AGAGAGTTGATGAAGGTGTA+GGG + chr3_4:36124470-36124489 None:intergenic 40.0%
!! TAGAGAGTTGATGAAGGTGT+AGG + chr3_4:36124471-36124490 None:intergenic 40.0%
CAACTCTCTACATGTTCATG+TGG - chr3_4:36124481-36124500 Msa0498830:intron 40.0%
GATTTAGTTGTGTGTCCTGA+AGG - chr3_4:36124855-36124874 Msa0498830:CDS 40.0%
TCCTGAAGGAACAACTTGTA+GGG - chr3_4:36124869-36124888 Msa0498830:CDS 40.0%
ACATTAGCATTCATAGCCAC+AGG + chr3_4:36124951-36124970 None:intergenic 40.0%
!! TGGAAAGTCTCCTTTTGAAG+TGG - chr3_4:36125100-36125119 Msa0498830:CDS 40.0%
AAAAGAGTTGGGTGATGCTT+TGG - chr3_4:36125136-36125155 Msa0498830:CDS 40.0%
AAAGAGTTGGGTGATGCTTT+GGG - chr3_4:36125137-36125156 Msa0498830:CDS 40.0%
ATGATGTTAGCTGGGAATGA+AGG - chr3_4:36125197-36125216 Msa0498830:CDS 40.0%
! ATGCTAGTTGCCTTTGAAGG+TGG - chr3_4:36121918-36121937 Msa0498830:CDS 45.0%
CACTTGTGTGCCTAGAGTTA+TGG - chr3_4:36122160-36122179 Msa0498830:CDS 45.0%
TTGTGTGCCTAGAGTTATGG+TGG - chr3_4:36122163-36122182 Msa0498830:CDS 45.0%
! TGCCTAGAGTTATGGTGGAA+GGG - chr3_4:36122168-36122187 Msa0498830:CDS 45.0%
AACCCTTCCACCATAACTCT+AGG + chr3_4:36122173-36122192 None:intergenic 45.0%
GCTACAGAGTTACACACTGT+TGG - chr3_4:36122227-36122246 Msa0498830:CDS 45.0%
! ACTGTTGGATGCTACTTCAC+TGG - chr3_4:36122242-36122261 Msa0498830:CDS 45.0%
AGCGGTATTTAACTACCGCT+GGG - chr3_4:36122766-36122785 Msa0498830:intron 45.0%
GGGGTAAGAAGTTGAGATGT+AGG + chr3_4:36122919-36122938 None:intergenic 45.0%
GGGTAAAATGGGAAATCCGT+TGG + chr3_4:36122949-36122968 None:intergenic 45.0%
GTCGGTACACAAGGCTAATT+TGG + chr3_4:36123088-36123107 None:intergenic 45.0%
GACAAATTCCCCATTTCGCT+TGG + chr3_4:36123899-36123918 None:intergenic 45.0%
AACGTCCAGAGTACAAACCA+CGG - chr3_4:36123999-36124018 Msa0498830:intron 45.0%
! CATCTGGGCCTTATACTTGT+GGG + chr3_4:36124094-36124113 None:intergenic 45.0%
! TCATCTGGGCCTTATACTTG+TGG + chr3_4:36124095-36124114 None:intergenic 45.0%
GTCCAAGTTCAATCATGCCA+AGG - chr3_4:36124394-36124413 Msa0498830:intron 45.0%
TCCCTTGGCATGATTGAACT+TGG + chr3_4:36124399-36124418 None:intergenic 45.0%
!!! GGCTTTGGATACTTTTCCCT+TGG + chr3_4:36124414-36124433 None:intergenic 45.0%
GTCCTGAAGGAACAACTTGT+AGG - chr3_4:36124868-36124887 Msa0498830:CDS 45.0%
TCCCTACAAGTTGTTCCTTC+AGG + chr3_4:36124873-36124892 None:intergenic 45.0%
TGCTGATGAGATTGTTCCTG+TGG - chr3_4:36124932-36124951 Msa0498830:CDS 45.0%
! CCAGCACAAGTGAGTTCTTT+TGG + chr3_4:36125080-36125099 None:intergenic 45.0%
CCAAAAGAACTCACTTGTGC+TGG - chr3_4:36125077-36125096 Msa0498830:CDS 45.0%
AAAGAACTCACTTGTGCTGG+TGG - chr3_4:36125080-36125099 Msa0498830:CDS 45.0%
! GTGCCTAGAGTTATGGTGGA+AGG - chr3_4:36122167-36122186 Msa0498830:CDS 50.0%
CAGCGGTATTTAACTACCGC+TGG - chr3_4:36122765-36122784 Msa0498830:intron 50.0%
GCGGTATTTAACTACCGCTG+GGG - chr3_4:36122767-36122786 Msa0498830:intron 50.0%
TCTTACCCCCACAAGACCAA+CGG - chr3_4:36122930-36122949 Msa0498830:intron 50.0%
!! GAAATCCGTTGGTCTTGTGG+GGG + chr3_4:36122938-36122957 None:intergenic 50.0%
!! GGAAATCCGTTGGTCTTGTG+GGG + chr3_4:36122939-36122958 None:intergenic 50.0%
!! GGGAAATCCGTTGGTCTTGT+GGG + chr3_4:36122940-36122959 None:intergenic 50.0%
!! TGGGAAATCCGTTGGTCTTG+TGG + chr3_4:36122941-36122960 None:intergenic 50.0%
GGAGCTTCTATGGTGCAGTC+AGG + chr3_4:36123737-36123756 None:intergenic 55.0%
! TGTGGCCGTGGTTTGTACTC+TGG + chr3_4:36124007-36124026 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 36121613 36125319 36121613 ID=Msa0498830;Name=Msa0498830
chr3_4 mRNA 36121613 36125319 36121613 ID=Msa0498830-mRNA-1;Parent=Msa0498830;Name=Msa0498830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|1|1|1|1|2|78|529
chr3_4 exon 36121613 36122566 36121613 ID=Msa0498830-mRNA-1:exon:7610;Parent=Msa0498830-mRNA-1
chr3_4 exon 36124541 36125319 36124541 ID=Msa0498830-mRNA-1:exon:7609;Parent=Msa0498830-mRNA-1
chr3_4 five_prime_UTR 36125255 36125319 36125255 ID=Msa0498830-mRNA-1:five_prime_utr;Parent=Msa0498830-mRNA-1
chr3_4 CDS 36124541 36125254 36124541 ID=Msa0498830-mRNA-1:cds;Parent=Msa0498830-mRNA-1
chr3_4 CDS 36121691 36122566 36121691 ID=Msa0498830-mRNA-1:cds;Parent=Msa0498830-mRNA-1
chr3_4 three_prime_UTR 36121613 36121690 36121613 ID=Msa0498830-mRNA-1:three_prime_utr;Parent=Msa0498830-mRNA-1
Gene Sequence

>Msa0498830

ATGGTGTTTCTTTTAGTACTCCTAAGGCTTTACCATGTGATTGTTAAATCATGTTATGAAGCTGCAAAGAAATTGAAAAGTCACAGCTTTAATTTCATTGATCTATCATCTAAACAACTTCATCAACCTTCAACCTTTCCTAGTATTTTGAATTGTGATTTAAAGGGGAGAGAGTCCCAAACACTTGTTTGTGACATTCATGATATCCTATTAAGGAACCATTCATTCTTTCCTTATTTCATGCTAGTTGCCTTTGAAGGTGGTAGCATTTTAAGAGCTTTCCTCTTACTTTGTTCATGTCCTATGTTATGCTTTTTGAGCTATGAACATAAGCTTAAAGTCATGATCTTCATTACTTTTTGTGGACTTAAAATAAAGGACATGGAAATGATTGCAAGGGTAGTTTTACCAAAGTTTTACATGGAGAATCTTAACCTTAAGGCTTGTGAGGTTTTGTCTTCAGTAGGGTCAAGAATTTTCTTCACTTGTGTGCCTAGAGTTATGGTGGAAGGGTTTCTTAAGGAATATTTGAATGGTGATGATGTTGTAGCTACAGAGTTACACACTGTTGGATGCTACTTCACTGGTTTGATTTCTAGGCATGGTTTGGTTGATAAGGATAGTGCTCTCATGGATTATTTTGGATATAGAAGGCCTGATTTAGGAATTGGAAGCACATGTGTCAATGATCATCATTTTATCTCTTATTGTAAGGAAGCTTATGTGGTGAGCAATGAAATATGTCCAAGTTCAATCATGCCAAGGGAAAAGTATCCAAAGCCATTAATATTTCATGATGGAAGACTAGCATTTTTCCCTACACCTTCATCAACTCTCTACATGTTCATGTGGCTTCCAATTGCAATTCCATTATCAATTTATAGATTATTTCTTGGGACAATAGTTTATTACAAATGGGGACTTGCATTAGTAGCATATAGTGGTATAAATATAAATATCAAAGGCTATAGTATTAGTAACCCTAAAAAAAATTCAATAACAAATAAAGGTGTACTCTATGTTTGTACACATAGGACATTATTAGATCCTGTTTTTCTTAGCCTGAGTTTGAGAAAACCTTTGACTACGGTAACTTATAGCTTAAGCAAAGTGTCAGAGATTATGTCTCCTATAAAGACAATGAGTTTAACAAGGGACAAAGAACAAGATAGAGAAACAATGCAAAGGTTGTTAAGTGAAGGTGATTTAGTTGTGTGTCCTGAAGGAACAACTTGTAGGGAGCCTTATCTATTGAGATTTAGTTCACTTTTTGCTGAACTTGCTGATGAGATTGTTCCTGTGGCTATGAATGCTAATGTGAGTATGTTTTATGGTACAACAGCTAGTGGATTAAAATGTTTGGACTCTTTTCTATTTTTGATGAATCCATGGCCTAGTTATAGTATTGAAGTACTTGAAAAGGTTCCAAAAGAACTCACTTGTGCTGGTGGAAAGTCTCCTTTTGAAGTGGCTAATTATATACAAAAAGAGTTGGGTGATGCTTTGGGATTTGAGTGTACAAATATTACAAGGAGGGATAAATATATGATGTTAGCTGGGAATGAAGGTGTTGTTCAAAAGAAGAAGTGA

Protein sequence

>Msa0498830

MVFLLVLLRLYHVIVKSCYEAAKKLKSHSFNFIDLSSKQLHQPSTFPSILNCDLKGRESQTLVCDIHDILLRNHSFFPYFMLVAFEGGSILRAFLLLCSCPMLCFLSYEHKLKVMIFITFCGLKIKDMEMIARVVLPKFYMENLNLKACEVLSSVGSRIFFTCVPRVMVEGFLKEYLNGDDVVATELHTVGCYFTGLISRHGLVDKDSALMDYFGYRRPDLGIGSTCVNDHHFISYCKEAYVVSNEICPSSIMPREKYPKPLIFHDGRLAFFPTPSSTLYMFMWLPIAIPLSIYRLFLGTIVYYKWGLALVAYSGININIKGYSISNPKKNSITNKGVLYVCTHRTLLDPVFLSLSLRKPLTTVTYSLSKVSEIMSPIKTMSLTRDKEQDRETMQRLLSEGDLVVCPEGTTCREPYLLRFSSLFAELADEIVPVAMNANVSMFYGTTASGLKCLDSFLFLMNPWPSYSIEVLEKVPKELTCAGGKSPFEVANYIQKELGDALGFECTNITRRDKYMMLAGNEGVVQKKK*