AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217400 MtrunA17_Chr2g0319211 96.277 188 7 0 1 188 68 255 1.01e-137 384
Msa0217400 MtrunA17_Chr4g0048601 28.431 102 67 1 85 180 52 153 8.80e-14 65.9
Msa0217400 MtrunA17_Chr6g0475941 28.244 131 82 3 60 180 25 153 1.06e-13 65.5
Msa0217400 MtrunA17_Chr4g0046821 28.431 102 67 1 85 180 54 155 2.36e-13 64.7
Msa0217400 MtrunA17_Chr6g0475981 27.481 131 83 3 60 180 25 153 4.65e-13 63.9
Msa0217400 MtrunA17_Chr4g0046791 27.027 148 89 4 52 180 5 152 5.56e-13 63.5
Msa0217400 MtrunA17_Chr4g0046751 27.451 102 68 1 85 180 54 155 7.80e-13 63.5
Msa0217400 MtrunA17_Chr5g0436181 26.271 118 79 2 60 177 25 134 5.18e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217400 AT5G54660.1 59.551 178 67 3 7 179 9 186 1.40e-73 220
Msa0217400 AT1G53540.1 27.273 121 87 1 59 179 24 143 1.29e-14 68.6
Msa0217400 AT1G07400.1 25.850 147 96 4 52 187 5 149 2.43e-12 62.4
Msa0217400 AT1G59860.1 27.723 101 72 1 87 187 48 147 2.54e-12 62.4
Msa0217400 AT4G10250.1 30.000 140 81 6 47 179 35 164 5.44e-12 62.0

Find 81 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACACACCATTTATT+TGG 0.108653 2_1:-64260788 None:intergenic
AATAAATAAAAGAATGAATT+AGG 0.151925 2_1:+64263310 Msa0217400:three_prime_UTR
CTTCTGATGCATTTCCTCTA+TGG 0.258229 2_1:+64260921 Msa0217400:CDS
TGTGGTCATTGGTGGGAAAA+TGG 0.259017 2_1:+64262522 Msa0217400:CDS
TGAAGGCTGTAAAGATATAA+AGG 0.282854 2_1:-64260589 None:intergenic
ATTCAAGTCCATGTTGATAA+AGG 0.284747 2_1:+64262435 Msa0217400:CDS
CAGGAACAACCTACAGAAAA+AGG 0.284814 2_1:+64263250 Msa0217400:three_prime_UTR
AACCTGGTGCCAAAGGTTTA+AGG 0.288939 2_1:+64263350 Msa0217400:three_prime_UTR
TAAAATGCCAAAGATCAAAA+AGG 0.291755 2_1:+64262629 Msa0217400:CDS
ATGATCAAACTCCAAATAAA+TGG 0.295652 2_1:+64260777 Msa0217400:CDS
AATAAATGGTGTGTTTCATT+AGG 0.320504 2_1:+64260791 Msa0217400:CDS
AGGATGTAATGCAAAGAAAA+AGG 0.321465 2_1:+64263270 Msa0217400:three_prime_UTR
TTAGTATCAATTTGCATAGA+TGG 0.347269 2_1:-64262734 None:intergenic
ATAAATAAAAGAATGAATTA+GGG 0.357571 2_1:+64263311 Msa0217400:three_prime_UTR
CTTTATTATGATTCATTTGA+CGG 0.375655 2_1:-64263451 Msa0217410:intron
CTGCACGGCATACCTTTATA+AGG 0.380906 2_1:-64263075 Msa0217410:CDS
ACATATAGAATAAATTCCTT+TGG 0.381210 2_1:-64260618 None:intergenic
GTCATAAATATACCTTATAA+AGG 0.391212 2_1:+64263063 Msa0217400:three_prime_UTR
TTTGCTACGCCTTAAACCTT+TGG 0.393227 2_1:-64263359 Msa0217410:intron
CGCCTTAAACCTTTGGCACC+AGG 0.410979 2_1:-64263352 Msa0217410:intron
TTCTTGTGATTTCAAAGAGT+TGG 0.416203 2_1:-64263564 Msa0217410:intron
TTCTGATGCATTTCCTCTAT+GGG 0.421633 2_1:+64260922 Msa0217400:CDS
TTCAAGTCCATGTTGATAAA+GGG 0.436330 2_1:+64262436 Msa0217400:CDS
CTCTTTCACTATAAGAGAAA+AGG 0.450666 2_1:+64260660 Msa0217400:five_prime_UTR
CGTAGCAAAGATGGAGATGT+AGG 0.455715 2_1:+64263373 Msa0217400:three_prime_UTR
AACAGTAATAAAATTTGAGT+TGG 0.456075 2_1:+64263615 Msa0217400:three_prime_UTR
GGTTTAAGGCGTAGCAAAGA+TGG 0.458857 2_1:+64263364 Msa0217400:three_prime_UTR
TTCTTCCAATCTGCATCCTC+TGG 0.460108 2_1:-64262567 None:intergenic
GATGCCAATCCACAGTGGTT+TGG 0.466039 2_1:-64260988 None:intergenic
ACTTGTAGTGAGGAGATAGA+TGG 0.471842 2_1:+64262983 Msa0217400:three_prime_UTR
GAGACTCAAAGACAAATGAT+TGG 0.472039 2_1:+64262496 Msa0217400:CDS
AGTGAGGAGATAGATGGATT+CGG 0.477558 2_1:+64262989 Msa0217400:three_prime_UTR
AAGAATTTCCCAAACAACAT+TGG 0.483083 2_1:-64260893 None:intergenic
CGACCGACTGAGAGAGATAG+TGG 0.491403 2_1:+64263497 Msa0217400:three_prime_UTR
AGATGCCAGAGGATGCAGAT+TGG 0.502624 2_1:+64262562 Msa0217400:CDS
AAAGATGGAGATGTAGGGTG+AGG 0.517537 2_1:+64263379 Msa0217400:three_prime_UTR
GATGGATTCGGATTACCTGC+TGG 0.521054 2_1:+64263001 Msa0217400:three_prime_UTR
GGGAAAATGGATATGTAAGA+AGG 0.521141 2_1:+64262535 Msa0217400:CDS
ATTGGAGGTGTGGTCATTGG+TGG 0.523846 2_1:+64262514 Msa0217400:CDS
GTGGAGAAGAAATTAATGGC+TGG 0.527944 2_1:+64260725 Msa0217400:exon
TAATAAAATTTGAGTTGGAA+AGG 0.528374 2_1:+64263620 Msa0217400:three_prime_UTR
AATGGCTGGTTCTAACAAGA+AGG 0.530014 2_1:+64260739 Msa0217400:exon
CCAATCCACAGTGGTTTGGT+TGG 0.532581 2_1:-64260984 None:intergenic
CCAACCAAACCACTGTGGAT+TGG 0.534059 2_1:+64260984 Msa0217400:CDS
ATGATTGGAGGTGTGGTCAT+TGG 0.535519 2_1:+64262511 Msa0217400:CDS
CCACCTTCCCTTTATCAACA+TGG 0.538491 2_1:-64262443 None:intergenic
TGTAATATAAAGACGCAAGA+AGG 0.556548 2_1:+64262826 Msa0217400:three_prime_UTR
AGAGAGAAACCTGGTGCCAA+AGG 0.575288 2_1:+64263343 Msa0217400:three_prime_UTR
AAGGGTTCTGATCATGCTCA+AGG 0.575715 2_1:+64262648 Msa0217400:CDS
TTCTTCTCCACAAAATTGTG+AGG 0.576342 2_1:-64260713 None:intergenic
TGGTTCTAACAAGAAGGTTG+AGG 0.580733 2_1:+64260745 Msa0217400:CDS
AGAAGACAAATAGACGGAAG+TGG 0.580830 2_1:-64263180 Msa0217410:CDS
CATAGAGGAAATGCATCAGA+AGG 0.582851 2_1:-64260920 None:intergenic
ATCATCAAAGAACAAATCAA+AGG 0.583609 2_1:+64262945 Msa0217400:three_prime_UTR
TCTGACTCAAACTCCCATAG+AGG 0.584106 2_1:-64260935 None:intergenic
CTTTATATTACATCATCACA+AGG 0.584758 2_1:-64262815 None:intergenic
AAGACAAATGATTGGAGGTG+TGG 0.588863 2_1:+64262504 Msa0217400:CDS
TCGTAGATGCACATGCTGCA+CGG 0.590596 2_1:-64263090 Msa0217410:CDS
TTGGAGGTGTGGTCATTGGT+GGG 0.595589 2_1:+64262515 Msa0217400:CDS
ATGTTAAAAGCTGAAATACC+AGG 0.596563 2_1:+64261028 Msa0217400:CDS
GACTAATCCAACAGTTCACA+AGG 0.599483 2_1:+64260844 Msa0217400:CDS
ACTCAAAGACAAATGATTGG+AGG 0.607196 2_1:+64262499 Msa0217400:CDS
AATAAAAGAATGAATTAGGG+GGG 0.608704 2_1:+64263314 Msa0217400:three_prime_UTR
TTGATGAGAAGACAAATAGA+CGG 0.609352 2_1:-64263186 Msa0217410:CDS
GTAGCAAAGATGGAGATGTA+GGG 0.614679 2_1:+64263374 Msa0217400:three_prime_UTR
TAAATAAAAGAATGAATTAG+GGG 0.615766 2_1:+64263312 Msa0217400:three_prime_UTR
GGGAGAGGAAGAGAGAAACC+TGG 0.615966 2_1:+64263334 Msa0217400:three_prime_UTR
GATTGGCATCACACAGATGA+GGG 0.616017 2_1:+64261001 Msa0217400:CDS
GGGAAGGTGGTGGAAATCAG+TGG 0.621675 2_1:+64262456 Msa0217400:CDS
AAATAAAAGAATGAATTAGG+GGG 0.622070 2_1:+64263313 Msa0217400:three_prime_UTR
TGTTGATAAAGGGAAGGTGG+TGG 0.624580 2_1:+64262446 Msa0217400:CDS
CCATGTTGATAAAGGGAAGG+TGG 0.624798 2_1:+64262443 Msa0217400:CDS
GGATTGGCATCACACAGATG+AGG 0.649591 2_1:+64261000 Msa0217400:CDS
TGGTGGAAATCAGTGGACAA+TGG 0.653289 2_1:+64262463 Msa0217400:CDS
CTTCCACTATCTCTCTCAGT+CGG 0.653761 2_1:-64263500 Msa0217410:intron
AGTCCATGTTGATAAAGGGA+AGG 0.656983 2_1:+64262440 Msa0217400:CDS
TGTGAACTACACTTGTAGTG+AGG 0.683306 2_1:+64262973 Msa0217400:three_prime_UTR
TCATGCTCAAGGATAAGATG+TGG 0.683918 2_1:+64262659 Msa0217400:exon
AAGAAGGCTTGAGATGCCAG+AGG 0.727204 2_1:+64262551 Msa0217400:CDS
AAGTTCCAACCAAACCACTG+TGG 0.744020 2_1:+64260979 Msa0217400:CDS
TGTGTGATGCCAATCCACAG+TGG 0.796798 2_1:-64260993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTCTCTTATTTTATT+AGG - chr2_1:64261110-64261129 None:intergenic 10.0%
!!! AGAAATAAAAGTTTTTTTTT+AGG + chr2_1:64261121-64261140 Msa0217400:intron 10.0%
!!! GAAATAAAAGTTTTTTTTTA+GGG + chr2_1:64261122-64261141 Msa0217400:intron 10.0%
!!! ATAATTCATATGTTTTAATA+TGG + chr2_1:64261601-64261620 Msa0217400:intron 10.0%
!! AAAATAAAAAAAATAAATGC+AGG + chr2_1:64263231-64263250 Msa0217400:three_prime_UTR 10.0%
!! AATAAATAAAAGAATGAATT+AGG + chr2_1:64263310-64263329 Msa0217400:three_prime_UTR 10.0%
!! ATAAATAAAAGAATGAATTA+GGG + chr2_1:64263311-64263330 Msa0217400:three_prime_UTR 10.0%
!! AGTAAAATATATCTCAAAAT+TGG + chr2_1:64261371-64261390 Msa0217400:intron 15.0%
!! TGTTATTATTACATATAAAC+AGG + chr2_1:64261469-64261488 Msa0217400:intron 15.0%
!!! CTTTGTTTTGATAATAAATT+TGG + chr2_1:64261631-64261650 Msa0217400:intron 15.0%
!! TAGTCCTTATATATATTTAA+AGG + chr2_1:64262188-64262207 Msa0217400:intron 15.0%
!! AGTCCTTATATATATTTAAA+GGG + chr2_1:64262189-64262208 Msa0217400:intron 15.0%
!!! AAAGAACTCTATTTTTAAAA+AGG - chr2_1:64262899-64262918 None:intergenic 15.0%
!! TAAATAAAAGAATGAATTAG+GGG + chr2_1:64263312-64263331 Msa0217400:three_prime_UTR 15.0%
!! ACATATAGAATAAATTCCTT+TGG - chr2_1:64260621-64260640 None:intergenic 20.0%
!! AATTGACAATGTAAAGTTAA+GGG - chr2_1:64261255-64261274 None:intergenic 20.0%
!! AAATTGACAATGTAAAGTTA+AGG - chr2_1:64261256-64261275 None:intergenic 20.0%
!! AAAATATATCTCAAAATTGG+AGG + chr2_1:64261374-64261393 Msa0217400:intron 20.0%
!! GAACTATTTATTAAATTTGC+AGG + chr2_1:64261396-64261415 Msa0217400:intron 20.0%
!!! CACAAAATTATTTGAAACAA+GGG + chr2_1:64261419-64261438 Msa0217400:intron 20.0%
!!! CAAAATAAAGAGATTTTATG+AGG + chr2_1:64261662-64261681 Msa0217400:intron 20.0%
!!! AATTCAAATTCTTAGGTTTT+AGG - chr2_1:64261725-64261744 None:intergenic 20.0%
!! TATCTTATATTATTCCATGT+GGG - chr2_1:64261787-64261806 None:intergenic 20.0%
!! ATATCTTATATTATTCCATG+TGG - chr2_1:64261788-64261807 None:intergenic 20.0%
!! GAATAATATAAGATATTTGC+TGG + chr2_1:64261792-64261811 Msa0217400:intron 20.0%
!! TTTAAAAACTAGCTATTAAG+GGG - chr2_1:64261835-64261854 None:intergenic 20.0%
!!! CTTTAAAAACTAGCTATTAA+GGG - chr2_1:64261836-64261855 None:intergenic 20.0%
!!! CATTCACATTTTATATGATA+CGG - chr2_1:64262122-64262141 None:intergenic 20.0%
!! TGACCCTTTAAATATATATA+AGG - chr2_1:64262195-64262214 None:intergenic 20.0%
!!! CAAGTTTTTAAATATGGAAA+GGG - chr2_1:64262247-64262266 None:intergenic 20.0%
!! GAATTCTAAGCAAAATTATA+GGG - chr2_1:64262315-64262334 None:intergenic 20.0%
!! AGAATTCTAAGCAAAATTAT+AGG - chr2_1:64262316-64262335 None:intergenic 20.0%
!! GTCATAAATATACCTTATAA+AGG + chr2_1:64263063-64263082 Msa0217400:three_prime_UTR 20.0%
!! AAATAAAAGAATGAATTAGG+GGG + chr2_1:64263313-64263332 Msa0217400:three_prime_UTR 20.0%
!! CTTTATTATGATTCATTTGA+CGG - chr2_1:64263454-64263473 Msa0217410:intron 20.0%
!! AACAGTAATAAAATTTGAGT+TGG + chr2_1:64263615-64263634 Msa0217400:three_prime_UTR 20.0%
!!! TAATAAAATTTGAGTTGGAA+AGG + chr2_1:64263620-64263639 Msa0217400:three_prime_UTR 20.0%
!!! AATTCCTTTGGAATTTTTGA+AGG - chr2_1:64260609-64260628 None:intergenic 25.0%
!! TTTTGTGGAGAAGAAATTAA+TGG + chr2_1:64260721-64260740 Msa0217400:exon 25.0%
! ATGATCAAACTCCAAATAAA+TGG + chr2_1:64260777-64260796 Msa0217400:CDS 25.0%
! AATGAAACACACCATTTATT+TGG - chr2_1:64260791-64260810 None:intergenic 25.0%
! AATAAATGGTGTGTTTCATT+AGG + chr2_1:64260791-64260810 Msa0217400:CDS 25.0%
!!! TTTTTAGTCCAATGTTGTTT+GGG + chr2_1:64260885-64260904 Msa0217400:CDS 25.0%
! TTTAACATCATACAGATGAA+TGG - chr2_1:64261169-64261188 None:intergenic 25.0%
!! TTTTACTTACTCTTTTTTCC+AGG - chr2_1:64261358-64261377 None:intergenic 25.0%
!! GCACAAAATTATTTGAAACA+AGG + chr2_1:64261418-64261437 Msa0217400:intron 25.0%
! GAAAGATTCACTATATAACA+AGG - chr2_1:64261497-64261516 None:intergenic 25.0%
!! TTGGATAAGGAAATTTTATG+AGG + chr2_1:64261561-64261580 Msa0217400:intron 25.0%
! GTAAGGAAATTCAAATTCTT+AGG - chr2_1:64261732-64261751 None:intergenic 25.0%
! AATTTGAATTTCCTTACCAT+AGG + chr2_1:64261735-64261754 Msa0217400:intron 25.0%
! ATTTGAATTTCCTTACCATA+GGG + chr2_1:64261736-64261755 Msa0217400:intron 25.0%
! TTAAAAACTAGCTATTAAGG+GGG - chr2_1:64261834-64261853 None:intergenic 25.0%
!! CCTTTAAAAACTAGCTATTA+AGG - chr2_1:64261837-64261856 None:intergenic 25.0%
!!! CCTTAATAGCTAGTTTTTAA+AGG + chr2_1:64261834-64261853 Msa0217400:intron 25.0%
! TGATAAGTATCTAAGAACTT+GGG - chr2_1:64262095-64262114 None:intergenic 25.0%
!! GCAAGTTTTTAAATATGGAA+AGG - chr2_1:64262248-64262267 None:intergenic 25.0%
!! TGTGTGCAAGTTTTTAAATA+TGG - chr2_1:64262253-64262272 None:intergenic 25.0%
!!! TTCCTGTTTTGAAAAATAAC+TGG - chr2_1:64262401-64262420 None:intergenic 25.0%
!!! TTATTTTTCAAAACAGGAAC+TGG + chr2_1:64262402-64262421 Msa0217400:intron 25.0%
!!! TATTTTTCAAAACAGGAACT+GGG + chr2_1:64262403-64262422 Msa0217400:intron 25.0%
! TAAAATGCCAAAGATCAAAA+AGG + chr2_1:64262629-64262648 Msa0217400:CDS 25.0%
! AAAATGCCAAAGATCAAAAA+GGG + chr2_1:64262630-64262649 Msa0217400:CDS 25.0%
! TTAGTATCAATTTGCATAGA+TGG - chr2_1:64262737-64262756 None:intergenic 25.0%
! CTTTATATTACATCATCACA+AGG - chr2_1:64262818-64262837 None:intergenic 25.0%
! ATCATCAAAGAACAAATCAA+AGG + chr2_1:64262945-64262964 Msa0217400:three_prime_UTR 25.0%
! AATAAAAGAATGAATTAGGG+GGG + chr2_1:64263314-64263333 Msa0217400:three_prime_UTR 25.0%
TGAAGGCTGTAAAGATATAA+AGG - chr2_1:64260592-64260611 None:intergenic 30.0%
CTCTTTCACTATAAGAGAAA+AGG + chr2_1:64260660-64260679 Msa0217400:five_prime_UTR 30.0%
!!! ACAAAATTGTGAGGCTTTTT+TGG - chr2_1:64260707-64260726 None:intergenic 30.0%
! AAAAAAGCCTCACAATTTTG+TGG + chr2_1:64260706-64260725 Msa0217400:five_prime_UTR 30.0%
!! CTTTTTAGTCCAATGTTGTT+TGG + chr2_1:64260884-64260903 Msa0217400:CDS 30.0%
AAGAATTTCCCAAACAACAT+TGG - chr2_1:64260896-64260915 None:intergenic 30.0%
ATGTTAAAAGCTGAAATACC+AGG + chr2_1:64261028-64261047 Msa0217400:CDS 30.0%
! GCATTGTAATATTTGTTACC+TGG - chr2_1:64261049-64261068 None:intergenic 30.0%
!! GCATCATCATTTTTAAATCC+TGG + chr2_1:64261337-64261356 Msa0217400:intron 30.0%
CAAAATTTAGCTAGTGTGTT+TGG + chr2_1:64261542-64261561 Msa0217400:intron 30.0%
ATGAGGTAATGTAATTTCAG+AGG + chr2_1:64261578-64261597 Msa0217400:intron 30.0%
!! TTTATGAGGTTTTGTGAACA+CGG + chr2_1:64261676-64261695 Msa0217400:intron 30.0%
TATTATTCCATGTGGGATTT+GGG - chr2_1:64261780-64261799 None:intergenic 30.0%
ATATTATTCCATGTGGGATT+TGG - chr2_1:64261781-64261800 None:intergenic 30.0%
GATAAGTATCTAAGAACTTG+GGG - chr2_1:64262094-64262113 None:intergenic 30.0%
GTGATAAGTATCTAAGAACT+TGG - chr2_1:64262096-64262115 None:intergenic 30.0%
! CACATTTTATATGATACGGA+AGG - chr2_1:64262118-64262137 None:intergenic 30.0%
ATGAGGCAATTGAAAATACT+AGG - chr2_1:64262345-64262364 None:intergenic 30.0%
!!! CACCAGTTATTTTTCAAAAC+AGG + chr2_1:64262396-64262415 Msa0217400:intron 30.0%
! ATTCAAGTCCATGTTGATAA+AGG + chr2_1:64262435-64262454 Msa0217400:CDS 30.0%
! TTCAAGTCCATGTTGATAAA+GGG + chr2_1:64262436-64262455 Msa0217400:CDS 30.0%
TGTAATATAAAGACGCAAGA+AGG + chr2_1:64262826-64262845 Msa0217400:three_prime_UTR 30.0%
TTGATGAGAAGACAAATAGA+CGG - chr2_1:64263189-64263208 Msa0217410:CDS 30.0%
AGGATGTAATGCAAAGAAAA+AGG + chr2_1:64263270-64263289 Msa0217400:three_prime_UTR 30.0%
! AAAAAGGCATGATTGAATAG+AGG + chr2_1:64263286-64263305 Msa0217400:three_prime_UTR 30.0%
CAAGAGAAAAAGAAAACGAT+TGG - chr2_1:64263422-64263441 Msa0217410:intron 30.0%
TTCTTGTGATTTCAAAGAGT+TGG - chr2_1:64263567-64263586 Msa0217410:intron 30.0%
! TGTTTTACTATGTGTACAGT+AGG - chr2_1:64263599-64263618 Msa0217410:intron 30.0%
ACAGCCTTCAAAAATTCCAA+AGG + chr2_1:64260602-64260621 Msa0217400:five_prime_UTR 35.0%
TTCTTCTCCACAAAATTGTG+AGG - chr2_1:64260716-64260735 None:intergenic 35.0%
TTCTGATGCATTTCCTCTAT+GGG + chr2_1:64260922-64260941 Msa0217400:CDS 35.0%
GTTAATCATCACACAGATGA+AGG + chr2_1:64261190-64261209 Msa0217400:intron 35.0%
TTAGCTAGTGTGTTTGGATA+AGG + chr2_1:64261548-64261567 Msa0217400:intron 35.0%
ATTTCCTTACCATAGGGATT+TGG + chr2_1:64261742-64261761 Msa0217400:intron 35.0%
!!! ATTTTTGAGTCATCGACATG+GGG - chr2_1:64261866-64261885 None:intergenic 35.0%
!!! CATTTTTGAGTCATCGACAT+GGG - chr2_1:64261867-64261886 None:intergenic 35.0%
AAAAATGGCAATACCTACGA+AGG + chr2_1:64261880-64261899 Msa0217400:intron 35.0%
AAAATGGCAATACCTACGAA+GGG + chr2_1:64261881-64261900 Msa0217400:intron 35.0%
GATAGGGACTTCAGTATTAT+GGG + chr2_1:64261979-64261998 Msa0217400:intron 35.0%
ATAGGGACTTCAGTATTATG+GGG + chr2_1:64261980-64261999 Msa0217400:intron 35.0%
ATCAAGTAGTATGGGATGTT+CGG + chr2_1:64262017-64262036 Msa0217400:intron 35.0%
TTAGAAGCTAGTTATCAACG+GGG - chr2_1:64262062-64262081 None:intergenic 35.0%
CTTAGAAGCTAGTTATCAAC+GGG - chr2_1:64262063-64262082 None:intergenic 35.0%
CCTTAGAAGCTAGTTATCAA+CGG - chr2_1:64262064-64262083 None:intergenic 35.0%
!! CGTTGATAACTAGCTTCTAA+GGG + chr2_1:64262062-64262081 Msa0217400:intron 35.0%
GAGACTCAAAGACAAATGAT+TGG + chr2_1:64262496-64262515 Msa0217400:CDS 35.0%
ACTCAAAGACAAATGATTGG+AGG + chr2_1:64262499-64262518 Msa0217400:CDS 35.0%
GGGAAAATGGATATGTAAGA+AGG + chr2_1:64262535-64262554 Msa0217400:CDS 35.0%
! TCAGAACCCTTTTTGATCTT+TGG - chr2_1:64262639-64262658 None:intergenic 35.0%
TAAAAAGGCAATTGCGCATT+AGG - chr2_1:64262884-64262903 None:intergenic 35.0%
!!! ACATGCTTTTTTTTTCCAGC+AGG - chr2_1:64263019-64263038 None:intergenic 35.0%
! GCATTACATCCTTTTTCTGT+AGG - chr2_1:64263262-64263281 Msa0217410:intron 35.0%
! GGTATAGAGAGAGAGTTTTG+AGG - chr2_1:64260686-64260705 None:intergenic 40.0%
GTGGAGAAGAAATTAATGGC+TGG + chr2_1:64260725-64260744 Msa0217400:exon 40.0%
!! AATGGCTGGTTCTAACAAGA+AGG + chr2_1:64260739-64260758 Msa0217400:exon 40.0%
!! TGGTTCTAACAAGAAGGTTG+AGG + chr2_1:64260745-64260764 Msa0217400:CDS 40.0%
GACTAATCCAACAGTTCACA+AGG + chr2_1:64260844-64260863 Msa0217400:CDS 40.0%
CCAAAAACCTTGTGAACTGT+TGG - chr2_1:64260854-64260873 None:intergenic 40.0%
! CCAACAGTTCACAAGGTTTT+TGG + chr2_1:64260851-64260870 Msa0217400:CDS 40.0%
!!! GTTCACAAGGTTTTTGGTGA+TGG + chr2_1:64260857-64260876 Msa0217400:CDS 40.0%
CATAGAGGAAATGCATCAGA+AGG - chr2_1:64260923-64260942 None:intergenic 40.0%
CTTCTGATGCATTTCCTCTA+TGG + chr2_1:64260921-64260940 Msa0217400:CDS 40.0%
! TAGAACCATAGAAGTGCATG+AGG + chr2_1:64261519-64261538 Msa0217400:intron 40.0%
! TTTTGCCTCATGCACTTCTA+TGG - chr2_1:64261527-64261546 None:intergenic 40.0%
ACTACCAAATCCCTATGGTA+AGG - chr2_1:64261749-64261768 None:intergenic 40.0%
! ACCATAGGGATTTGGTAGTA+TGG + chr2_1:64261750-64261769 Msa0217400:intron 40.0%
! CCATAGGGATTTGGTAGTAT+GGG + chr2_1:64261751-64261770 Msa0217400:intron 40.0%
! CATAGGGATTTGGTAGTATG+GGG + chr2_1:64261752-64261771 Msa0217400:intron 40.0%
! GATATTTGCTGGAAGTAGCT+TGG + chr2_1:64261803-64261822 Msa0217400:intron 40.0%
!!! CCATTTTTGAGTCATCGACA+TGG - chr2_1:64261868-64261887 None:intergenic 40.0%
CCATGTCGATGACTCAAAAA+TGG + chr2_1:64261865-64261884 Msa0217400:intron 40.0%
AAATGGCAATACCTACGAAG+GGG + chr2_1:64261882-64261901 Msa0217400:intron 40.0%
!! TACTCTACGGTGCTATACTT+GGG - chr2_1:64261921-64261940 None:intergenic 40.0%
!! ATACTCTACGGTGCTATACT+TGG - chr2_1:64261922-64261941 None:intergenic 40.0%
GGATAGGGACTTCAGTATTA+TGG + chr2_1:64261978-64261997 Msa0217400:intron 40.0%
AAGTCCCACATCAAGTAGTA+TGG + chr2_1:64262008-64262027 Msa0217400:intron 40.0%
AGTCCCACATCAAGTAGTAT+GGG + chr2_1:64262009-64262028 Msa0217400:intron 40.0%
CATCCCATACTACTTGATGT+GGG - chr2_1:64262015-64262034 None:intergenic 40.0%
ACATCCCATACTACTTGATG+TGG - chr2_1:64262016-64262035 None:intergenic 40.0%
!! CCGTTGATAACTAGCTTCTA+AGG + chr2_1:64262061-64262080 Msa0217400:intron 40.0%
! TGATAACTAGCTTCTAAGGG+AGG + chr2_1:64262065-64262084 Msa0217400:intron 40.0%
! GATAACTAGCTTCTAAGGGA+GGG + chr2_1:64262066-64262085 Msa0217400:intron 40.0%
!! TATGGAAAGGGCACTTGTTA+AGG - chr2_1:64262235-64262254 None:intergenic 40.0%
! ATTTCCACCAAGAGTGTGTT+TGG - chr2_1:64262368-64262387 None:intergenic 40.0%
! AGTCCATGTTGATAAAGGGA+AGG + chr2_1:64262440-64262459 Msa0217400:CDS 40.0%
AAGACAAATGATTGGAGGTG+TGG + chr2_1:64262504-64262523 Msa0217400:CDS 40.0%
TCATGCTCAAGGATAAGATG+TGG + chr2_1:64262659-64262678 Msa0217400:exon 40.0%
TGTGAACTACACTTGTAGTG+AGG + chr2_1:64262973-64262992 Msa0217400:three_prime_UTR 40.0%
ACTTGTAGTGAGGAGATAGA+TGG + chr2_1:64262983-64263002 Msa0217400:three_prime_UTR 40.0%
! AGTGAGGAGATAGATGGATT+CGG + chr2_1:64262989-64263008 Msa0217400:three_prime_UTR 40.0%
AGAAGACAAATAGACGGAAG+TGG - chr2_1:64263183-64263202 Msa0217410:CDS 40.0%
CAGGAACAACCTACAGAAAA+AGG + chr2_1:64263250-64263269 Msa0217400:three_prime_UTR 40.0%
TTTGCTACGCCTTAAACCTT+TGG - chr2_1:64263362-64263381 Msa0217410:intron 40.0%
GTAGCAAAGATGGAGATGTA+GGG + chr2_1:64263374-64263393 Msa0217400:three_prime_UTR 40.0%
CTCAGTCGGTCGTAAAAAAA+TGG - chr2_1:64263489-64263508 Msa0217410:intron 40.0%
TCTGACTCAAACTCCCATAG+AGG - chr2_1:64260938-64260957 None:intergenic 45.0%
AAGTTCCAACCAAACCACTG+TGG + chr2_1:64260979-64260998 Msa0217400:CDS 45.0%
GATTGGCATCACACAGATGA+GGG + chr2_1:64261001-64261020 Msa0217400:CDS 45.0%
CCCATACTACCAAATCCCTA+TGG - chr2_1:64261754-64261773 None:intergenic 45.0%
!! TTTTTAGTCAGCCCCTTCGT+AGG - chr2_1:64261896-64261915 None:intergenic 45.0%
TCAGAGACGTTGCTAGGATA+GGG + chr2_1:64261963-64261982 Msa0217400:intron 45.0%
! GATGTTCGGTGAAAGTAGCT+TGG + chr2_1:64262031-64262050 Msa0217400:intron 45.0%
! ACCAAGAGTGTGTTTGGATG+AGG - chr2_1:64262362-64262381 None:intergenic 45.0%
TCATCCAAACACACTCTTGG+TGG + chr2_1:64262361-64262380 Msa0217400:intron 45.0%
CCACCTTCCCTTTATCAACA+TGG - chr2_1:64262446-64262465 None:intergenic 45.0%
! CCATGTTGATAAAGGGAAGG+TGG + chr2_1:64262443-64262462 Msa0217400:CDS 45.0%
! TGTTGATAAAGGGAAGGTGG+TGG + chr2_1:64262446-64262465 Msa0217400:CDS 45.0%
TGGTGGAAATCAGTGGACAA+TGG + chr2_1:64262463-64262482 Msa0217400:CDS 45.0%
! ATGATTGGAGGTGTGGTCAT+TGG + chr2_1:64262511-64262530 Msa0217400:CDS 45.0%
TGTGGTCATTGGTGGGAAAA+TGG + chr2_1:64262522-64262541 Msa0217400:CDS 45.0%
TTCTTCCAATCTGCATCCTC+TGG - chr2_1:64262570-64262589 None:intergenic 45.0%
! AAGGGTTCTGATCATGCTCA+AGG + chr2_1:64262648-64262667 Msa0217400:CDS 45.0%
CTGCACGGCATACCTTTATA+AGG - chr2_1:64263078-64263097 Msa0217410:CDS 45.0%
AAGAATGAATTAGGGGGGAG+AGG + chr2_1:64263319-64263338 Msa0217400:three_prime_UTR 45.0%
! AACCTGGTGCCAAAGGTTTA+AGG + chr2_1:64263350-64263369 Msa0217400:three_prime_UTR 45.0%
! GGTTTAAGGCGTAGCAAAGA+TGG + chr2_1:64263364-64263383 Msa0217400:three_prime_UTR 45.0%
CGTAGCAAAGATGGAGATGT+AGG + chr2_1:64263373-64263392 Msa0217400:three_prime_UTR 45.0%
AAAGATGGAGATGTAGGGTG+AGG + chr2_1:64263379-64263398 Msa0217400:three_prime_UTR 45.0%
CTTCCACTATCTCTCTCAGT+CGG - chr2_1:64263503-64263522 Msa0217410:intron 45.0%
!! AAAATTTGAAAAATTAAATA+GGG - chr2_1:64262279-64262298 None:intergenic 5.0%
!! TAAAATTTGAAAAATTAAAT+AGG - chr2_1:64262280-64262299 None:intergenic 5.0%
!! CCAATCCACAGTGGTTTGGT+TGG - chr2_1:64260987-64261006 None:intergenic 50.0%
CCAACCAAACCACTGTGGAT+TGG + chr2_1:64260984-64261003 Msa0217400:CDS 50.0%
GATGCCAATCCACAGTGGTT+TGG - chr2_1:64260991-64261010 None:intergenic 50.0%
TGTGTGATGCCAATCCACAG+TGG - chr2_1:64260996-64261015 None:intergenic 50.0%
! GGATTGGCATCACACAGATG+AGG + chr2_1:64261000-64261019 Msa0217400:CDS 50.0%
ATCCTAGCAACGTCTCTGAG+AGG - chr2_1:64261962-64261981 None:intergenic 50.0%
CTCAGAGACGTTGCTAGGAT+AGG + chr2_1:64261962-64261981 Msa0217400:intron 50.0%
GCCTCATCCAAACACACTCT+TGG + chr2_1:64262358-64262377 Msa0217400:intron 50.0%
! ATTGGAGGTGTGGTCATTGG+TGG + chr2_1:64262514-64262533 Msa0217400:CDS 50.0%
! TTGGAGGTGTGGTCATTGGT+GGG + chr2_1:64262515-64262534 Msa0217400:CDS 50.0%
AAGAAGGCTTGAGATGCCAG+AGG + chr2_1:64262551-64262570 Msa0217400:CDS 50.0%
AGATGCCAGAGGATGCAGAT+TGG + chr2_1:64262562-64262581 Msa0217400:CDS 50.0%
! GATGGATTCGGATTACCTGC+TGG + chr2_1:64263001-64263020 Msa0217400:three_prime_UTR 50.0%
TCGTAGATGCACATGCTGCA+CGG - chr2_1:64263093-64263112 Msa0217410:CDS 50.0%
! AGAGAGAAACCTGGTGCCAA+AGG + chr2_1:64263343-64263362 Msa0217400:three_prime_UTR 50.0%
! CACCGTAGAGTATCAGCCGT+CGG + chr2_1:64261929-64261948 Msa0217400:intron 55.0%
! ACCGTAGAGTATCAGCCGTC+GGG + chr2_1:64261930-64261949 Msa0217400:intron 55.0%
TCCCGACGGCTGATACTCTA+CGG - chr2_1:64261934-64261953 None:intergenic 55.0%
TCTGAGAGGCAACATCCCGA+CGG - chr2_1:64261948-64261967 None:intergenic 55.0%
TGCCTCTCAGAGACGTTGCT+AGG + chr2_1:64261957-64261976 Msa0217400:intron 55.0%
!! GGGAAGGTGGTGGAAATCAG+TGG + chr2_1:64262456-64262475 Msa0217400:CDS 55.0%
GGGAGAGGAAGAGAGAAACC+TGG + chr2_1:64263334-64263353 Msa0217400:three_prime_UTR 55.0%
CGCCTTAAACCTTTGGCACC+AGG - chr2_1:64263355-64263374 Msa0217410:intron 55.0%
CGACCGACTGAGAGAGATAG+TGG + chr2_1:64263497-64263516 Msa0217400:three_prime_UTR 55.0%
! TGGGGTGCCCAAATCCCACA+TGG + chr2_1:64261770-64261789 Msa0217400:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64260541 64263647 64260541 ID=Msa0217400;Name=Msa0217400
chr2_1 mRNA 64260541 64263647 64260541 ID=Msa0217400-mRNA-1;Parent=Msa0217400;Name=Msa0217400-mRNA-1;_AED=0.31;_eAED=0.31;_QI=199|1|1|1|0.5|0.66|3|878|188
chr2_1 exon 64260541 64261049 64260541 ID=Msa0217400-mRNA-1:exon:17790;Parent=Msa0217400-mRNA-1
chr2_1 exon 64262418 64262847 64262418 ID=Msa0217400-mRNA-1:exon:17791;Parent=Msa0217400-mRNA-1
chr2_1 exon 64262943 64263647 64262943 ID=Msa0217400-mRNA-1:exon:17792;Parent=Msa0217400-mRNA-1
chr2_1 five_prime_UTR 64260541 64260739 64260541 ID=Msa0217400-mRNA-1:five_prime_utr;Parent=Msa0217400-mRNA-1
chr2_1 CDS 64260740 64261049 64260740 ID=Msa0217400-mRNA-1:cds;Parent=Msa0217400-mRNA-1
chr2_1 CDS 64262418 64262674 64262418 ID=Msa0217400-mRNA-1:cds;Parent=Msa0217400-mRNA-1
chr2_1 three_prime_UTR 64262675 64262847 64262675 ID=Msa0217400-mRNA-1:three_prime_utr;Parent=Msa0217400-mRNA-1
chr2_1 three_prime_UTR 64262943 64263647 64262943 ID=Msa0217400-mRNA-1:three_prime_utr;Parent=Msa0217400-mRNA-1
Gene Sequence

>Msa0217400

ATGGCTGGTTCTAACAAGAAGGTTGAGGTGATTTTAGATGATCAAACTCCAAATAAATGGTGTGTTTCATTAGGAGATGAAACTTTCAAAAGATTCTTCAGCATGACTAATCCAACAGTTCACAAGGTTTTTGGTGATGGATCACTTTTTAGTCCAATGTTGTTTGGGAAATTCTTTGATCCTTCTGATGCATTTCCTCTATGGGAGTTTGAGTCAGATGTTTTGTTATCTCATCTAAGAAGTTCCAACCAAACCACTGTGGATTGGCATCACACAGATGAGGGCTATATGTTAAAAGCTGAAATACCAGGAACTGGGAAAAACAACATTCAAGTCCATGTTGATAAAGGGAAGGTGGTGGAAATCAGTGGACAATGGAAGCAGCAAAGAGACTCAAAGACAAATGATTGGAGGTGTGGTCATTGGTGGGAAAATGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAATATACAAGCATTCATATATAATGACATATTCTTAGAAATTAAAATGCCAAAGATCAAAAAGGGTTCTGATCATGCTCAAGGATAA

Protein sequence

>Msa0217400

MAGSNKKVEVILDDQTPNKWCVSLGDETFKRFFSMTNPTVHKVFGDGSLFSPMLFGKFFDPSDAFPLWEFESDVLLSHLRSSNQTTVDWHHTDEGYMLKAEIPGTGKNNIQVHVDKGKVVEISGQWKQQRDSKTNDWRCGHWWENGYVRRLEMPEDADWKNIQAFIYNDIFLEIKMPKIKKGSDHAQG*