Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405760 | XP_039687130.1 | 95.274 | 529 | 25 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1042 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405760 | sp|Q9SHJ5|GPAT1_ARATH | 52.487 | 583 | 214 | 14 | 4 | 526 | 6 | 585 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405760 | A0A396IMT2 | 95.274 | 529 | 25 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1042 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0405760 | 0.803707 | 3.065722e-49 | -8.615850e-47 |
| Msa0011720 | Msa0405760 | 0.822006 | 2.984392e-53 | -8.615850e-47 |
| Msa0024680 | Msa0405760 | 0.801275 | 9.721772e-49 | -8.615850e-47 |
| Msa0030000 | Msa0405760 | 0.802231 | 6.187645e-49 | -8.615850e-47 |
| Msa0060350 | Msa0405760 | 0.806760 | 7.032894e-50 | -8.615850e-47 |
| Msa0060600 | Msa0405760 | 0.804158 | 2.470766e-49 | -8.615850e-47 |
| Msa0083160 | Msa0405760 | 0.815822 | 7.592515e-52 | -8.615850e-47 |
| Msa0091770 | Msa0405760 | 0.801981 | 6.967577e-49 | -8.615850e-47 |
| Msa0094100 | Msa0405760 | 0.826500 | 2.621312e-54 | -8.615850e-47 |
| Msa0101060 | Msa0405760 | 0.804750 | 1.859544e-49 | -8.615850e-47 |
| Msa0105340 | Msa0405760 | 0.813854 | 2.072837e-51 | -8.615850e-47 |
| Msa0105420 | Msa0405760 | 0.818379 | 2.021781e-52 | -8.615850e-47 |
| Msa0140910 | Msa0405760 | 0.805160 | 1.526362e-49 | -8.615850e-47 |
| Msa0141550 | Msa0405760 | 0.819175 | 1.333155e-52 | -8.615850e-47 |
| Msa0141670 | Msa0405760 | 0.813703 | 2.237532e-51 | -8.615850e-47 |
| Msa0143970 | Msa0405760 | 0.804985 | 1.660953e-49 | -8.615850e-47 |
| Msa0149500 | Msa0405760 | 0.802197 | 6.290084e-49 | -8.615850e-47 |
| Msa0151690 | Msa0405760 | 0.814622 | 1.402850e-51 | -8.615850e-47 |
| Msa0162030 | Msa0405760 | 0.822719 | 2.037604e-53 | -8.615850e-47 |
| Msa0162050 | Msa0405760 | 0.813447 | 2.548500e-51 | -8.615850e-47 |
| Msa0162070 | Msa0405760 | 0.825791 | 3.866169e-54 | -8.615850e-47 |
| Msa0168100 | Msa0405760 | 0.806743 | 7.093078e-50 | -8.615850e-47 |
| Msa0168390 | Msa0405760 | 0.807873 | 4.086745e-50 | -8.615850e-47 |
| Msa0183610 | Msa0405760 | 0.806829 | 6.803603e-50 | -8.615850e-47 |
| Msa0207000 | Msa0405760 | 0.802524 | 5.386086e-49 | -8.615850e-47 |
| Msa0208630 | Msa0405760 | 0.811045 | 8.520942e-51 | -8.615850e-47 |
| Msa0213080 | Msa0405760 | 0.818417 | 1.982236e-52 | -8.615850e-47 |
| Msa0217400 | Msa0405760 | 0.811690 | 6.171912e-51 | -8.615850e-47 |
| Msa0217470 | Msa0405760 | 0.801711 | 7.915446e-49 | -8.615850e-47 |
| Msa0221800 | Msa0405760 | 0.807325 | 5.341582e-50 | -8.615850e-47 |
| Msa0227500 | Msa0405760 | 0.807492 | 4.922411e-50 | -8.615850e-47 |
| Msa0227510 | Msa0405760 | 0.808012 | 3.816284e-50 | -8.615850e-47 |
| Msa0371610 | Msa0405760 | 0.821798 | 3.334277e-53 | -8.615850e-47 |
| Msa0395510 | Msa0405760 | 0.801758 | 7.740501e-49 | -8.615850e-47 |
| Msa0405760 | Msa0405770 | 0.838111 | 3.491059e-57 | -8.615850e-47 |
| Msa0405760 | Msa0409820 | 0.802886 | 4.535437e-49 | -8.615850e-47 |
| Msa0405760 | Msa0413740 | 0.812851 | 3.443037e-51 | -8.615850e-47 |
| Msa0405760 | Msa0442880 | 0.800931 | 1.143038e-48 | -8.615850e-47 |
| Msa0405760 | Msa0484690 | 0.813796 | 2.134626e-51 | -8.615850e-47 |
| Msa0405760 | Msa0490350 | 0.807595 | 4.682250e-50 | -8.615850e-47 |
| Msa0405760 | Msa0498830 | 0.895334 | 1.057554e-75 | -8.615850e-47 |
| Msa0405760 | Msa0505390 | 0.813979 | 1.946054e-51 | -8.615850e-47 |
| Msa0405760 | Msa0505660 | 0.811664 | 6.251136e-51 | -8.615850e-47 |
| Msa0405760 | Msa0508200 | 0.814520 | 1.477344e-51 | -8.615850e-47 |
| Msa0405760 | Msa0508610 | 0.812036 | 5.189795e-51 | -8.615850e-47 |
| Msa0405760 | Msa0508650 | 0.811225 | 7.788014e-51 | -8.615850e-47 |
| Msa0405760 | Msa0511890 | 0.805161 | 1.525954e-49 | -8.615850e-47 |
| Msa0405760 | Msa0524050 | 0.806034 | 1.000437e-49 | -8.615850e-47 |
| Msa0405760 | Msa0546380 | 0.811558 | 6.593919e-51 | -8.615850e-47 |
| Msa0405760 | Msa0549740 | 0.839423 | 1.598747e-57 | -8.615850e-47 |
| Msa0405760 | Msa0581340 | 0.808549 | 2.932876e-50 | -8.615850e-47 |
| Msa0405760 | Msa0606060 | 0.808974 | 2.379465e-50 | -8.615850e-47 |
| Msa0405760 | Msa0620640 | 0.815577 | 8.610028e-52 | -8.615850e-47 |
| Msa0405760 | Msa0621890 | 0.835324 | 1.792929e-56 | -8.615850e-47 |
| Msa0405760 | Msa0642650 | 0.802335 | 5.891422e-49 | -8.615850e-47 |
| Msa0405760 | Msa0646390 | 0.827327 | 1.663057e-54 | -8.615850e-47 |
| Msa0405760 | Msa0647000 | 0.818181 | 2.240896e-52 | -8.615850e-47 |
| Msa0405760 | Msa0654060 | 0.817066 | 3.998049e-52 | -8.615850e-47 |
| Msa0405760 | Msa0686610 | 0.809058 | 2.282826e-50 | -8.615850e-47 |
| Msa0405760 | Msa0697140 | 0.800416 | 1.456492e-48 | -8.615850e-47 |
| Msa0405760 | Msa0706370 | 0.804383 | 2.217752e-49 | -8.615850e-47 |
| Msa0405760 | Msa0719340 | 0.813352 | 2.673629e-51 | -8.615850e-47 |
| Msa0405760 | Msa0726610 | 0.805014 | 1.637990e-49 | -8.615850e-47 |
| Msa0405760 | Msa0730180 | 0.810126 | 1.346167e-50 | -8.615850e-47 |
| Msa0405760 | Msa0756480 | 0.816933 | 4.283729e-52 | -8.615850e-47 |
| Msa0405760 | Msa0770430 | 0.807915 | 4.002541e-50 | -8.615850e-47 |
| Msa0405760 | Msa0772150 | 0.808465 | 3.056495e-50 | -8.615850e-47 |
| Msa0405760 | Msa0792510 | 0.831605 | 1.518850e-55 | -8.615850e-47 |
| Msa0405760 | Msa0835510 | 0.810780 | 9.721274e-51 | -8.615850e-47 |
| Msa0405760 | Msa0836190 | 0.801838 | 7.453619e-49 | -8.615850e-47 |
| Msa0405760 | Msa0837990 | 0.804739 | 1.869316e-49 | -8.615850e-47 |
| Msa0405760 | Msa0890250 | 0.818004 | 2.457331e-52 | -8.615850e-47 |
| Msa0405760 | Msa0909710 | 0.806341 | 8.622115e-50 | -8.615850e-47 |
| Msa0405760 | Msa0925160 | 0.811720 | 6.079659e-51 | -8.615850e-47 |
| Msa0405760 | Msa0937940 | 0.815243 | 1.021399e-51 | -8.615850e-47 |
| Msa0405760 | Msa0946320 | 0.811715 | 6.093961e-51 | -8.615850e-47 |
| Msa0405760 | Msa0951720 | 0.808077 | 3.697322e-50 | -8.615850e-47 |
| Msa0405760 | Msa0978000 | 0.806324 | 8.694010e-50 | -8.615850e-47 |
| Msa0405760 | Msa0980440 | 0.811376 | 7.219677e-51 | -8.615850e-47 |
| Msa0405760 | Msa0981740 | 0.809865 | 1.531457e-50 | -8.615850e-47 |
| Msa0405760 | Msa0988500 | 0.808727 | 2.687137e-50 | -8.615850e-47 |
| Msa0405760 | Msa1008490 | 0.805484 | 1.305822e-49 | -8.615850e-47 |
| Msa0405760 | Msa1009000 | 0.819371 | 1.202730e-52 | -8.615850e-47 |
| Msa0405760 | Msa1026760 | 0.801222 | 9.970266e-49 | -8.615850e-47 |
| Msa0405760 | Msa1036390 | 0.824974 | 6.035097e-54 | -8.615850e-47 |
| Msa0405760 | Msa1038050 | 0.804172 | 2.454439e-49 | -8.615850e-47 |
| Msa0405760 | Msa1044040 | 0.812888 | 3.378912e-51 | -8.615850e-47 |
| Msa0405760 | Msa1056640 | 0.804635 | 1.965186e-49 | -8.615850e-47 |
| Msa0405760 | Msa1069300 | 0.850222 | 1.952797e-60 | -8.615850e-47 |
| Msa0405760 | Msa1076680 | 0.826023 | 3.405301e-54 | -8.615850e-47 |
| Msa0405760 | Msa1080460 | 0.810988 | 8.765792e-51 | -8.615850e-47 |
| Msa0405760 | Msa1080470 | 0.800955 | 1.130491e-48 | -8.615850e-47 |
| Msa0405760 | Msa1081600 | 0.805332 | 1.405137e-49 | -8.615850e-47 |
| Msa0405760 | Msa1097380 | 0.847296 | 1.264931e-59 | -8.615850e-47 |
| Msa0405760 | Msa1099030 | 0.801322 | 9.511667e-49 | -8.615850e-47 |
| Msa0405760 | Msa1113200 | 0.808259 | 3.382246e-50 | -8.615850e-47 |
| Msa0405760 | Msa1151960 | 0.818501 | 1.896709e-52 | -8.615850e-47 |
| Msa0405760 | Msa1159360 | 0.803954 | 2.723792e-49 | -8.615850e-47 |
| Msa0405760 | Msa1166370 | 0.804384 | 2.216346e-49 | -8.615850e-47 |
| Msa0405760 | Msa1220230 | 0.810626 | 1.049937e-50 | -8.615850e-47 |
| Msa0405760 | Msa1221200 | -0.806502 | 7.975965e-50 | -8.615850e-47 |
| Msa0405760 | Msa1221260 | 0.809053 | 2.288376e-50 | -8.615850e-47 |
| Msa0405760 | Msa1226600 | 0.805441 | 1.332693e-49 | -8.615850e-47 |
| Msa0405760 | Msa1237030 | 0.813690 | 2.253341e-51 | -8.615850e-47 |
| Msa0405760 | Msa1265960 | 0.805790 | 1.125985e-49 | -8.615850e-47 |
| Msa0405760 | Msa1280130 | 0.821981 | 3.024020e-53 | -8.615850e-47 |
| Msa0405760 | Msa1323060 | 0.811216 | 7.821420e-51 | -8.615850e-47 |
| Msa0405760 | Msa1326000 | 0.820252 | 7.566475e-53 | -8.615850e-47 |
| Msa0405760 | Msa1337340 | 0.809612 | 1.736081e-50 | -8.615850e-47 |
| Msa0405760 | Msa1358870 | -0.816707 | 4.814041e-52 | -8.615850e-47 |
| Msa0405760 | Msa1363890 | 0.832937 | 7.109411e-56 | -8.615850e-47 |
| Msa0405760 | Msa1365040 | -0.809922 | 1.489224e-50 | -8.615850e-47 |
| Msa0405760 | Msa1366620 | 0.805307 | 1.422203e-49 | -8.615850e-47 |
| Msa0405760 | Msa1373950 | 0.831129 | 1.988375e-55 | -8.615850e-47 |
| Msa0405760 | Msa1374440 | 0.817227 | 3.678795e-52 | -8.615850e-47 |
| Msa0405760 | Msa1418200 | 0.810633 | 1.046137e-50 | -8.615850e-47 |
| Msa0405760 | Msa1422270 | 0.804355 | 2.247773e-49 | -8.615850e-47 |
| Msa0405760 | Msa1431000 | 0.806331 | 8.662338e-50 | -8.615850e-47 |
| Msa0405760 | Msa1457670 | -0.801301 | 9.605212e-49 | -8.615850e-47 |
| Msa0405760 | Msa1461250 | -0.800225 | 1.592358e-48 | -8.615850e-47 |
| Msa0405760 | Msa1464560 | 0.807696 | 4.456640e-50 | -8.615850e-47 |
| Msa0265820 | Msa0405760 | 0.842045 | 3.286526e-58 | -8.615850e-47 |
| Msa0269360 | Msa0405760 | 0.815977 | 7.012589e-52 | -8.615850e-47 |
| Msa0274520 | Msa0405760 | 0.800933 | 1.142365e-48 | -8.615850e-47 |
| Msa0286790 | Msa0405760 | 0.806129 | 9.557008e-50 | -8.615850e-47 |
| Msa0296560 | Msa0405760 | 0.808703 | 2.718710e-50 | -8.615850e-47 |
| Msa0296610 | Msa0405760 | 0.813922 | 2.002526e-51 | -8.615850e-47 |
| Msa0326670 | Msa0405760 | 0.801095 | 1.058564e-48 | -8.615850e-47 |
| Msa0335040 | Msa0405760 | 0.812070 | 5.099741e-51 | -8.615850e-47 |
| Msa0342200 | Msa0405760 | 0.817950 | 2.526931e-52 | -8.615850e-47 |
| Msa0359110 | Msa0405760 | 0.847598 | 1.044854e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405760 | MtrunA17_Chr3g0096481 | 95.274 | 529 | 25 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1042 |
| Msa0405760 | MtrunA17_Chr5g0443341 | 70.000 | 520 | 149 | 3 | 11 | 527 | 16 | 531 | 0.0 | 743 |
| Msa0405760 | MtrunA17_Chr3g0096591 | 80.952 | 273 | 50 | 1 | 253 | 525 | 1 | 271 | 2.47e-163 | 464 |
| Msa0405760 | MtrunA17_Chr5g0425071 | 48.441 | 481 | 228 | 10 | 59 | 529 | 15 | 485 | 1.41e-151 | 442 |
| Msa0405760 | MtrunA17_Chr4g0005991 | 47.189 | 498 | 238 | 9 | 46 | 529 | 7 | 493 | 2.16e-150 | 440 |
| Msa0405760 | MtrunA17_Chr3g0096581 | 83.065 | 248 | 37 | 1 | 2 | 244 | 1 | 248 | 8.75e-149 | 426 |
| Msa0405760 | MtrunA17_Chr1g0170421 | 45.749 | 494 | 256 | 6 | 44 | 528 | 39 | 529 | 2.43e-148 | 438 |
| Msa0405760 | MtrunA17_Chr7g0241831 | 47.746 | 488 | 231 | 8 | 55 | 529 | 19 | 495 | 3.34e-148 | 434 |
| Msa0405760 | MtrunA17_Chr1g0194391 | 45.841 | 517 | 251 | 12 | 26 | 529 | 33 | 533 | 2.95e-141 | 418 |
| Msa0405760 | MtrunA17_Chr8g0348781 | 42.800 | 500 | 258 | 10 | 45 | 526 | 9 | 498 | 4.32e-134 | 398 |
| Msa0405760 | MtrunA17_Chr5g0435581 | 43.035 | 481 | 251 | 9 | 60 | 526 | 2 | 473 | 2.61e-127 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405760 | AT1G06520.1 | 52.487 | 583 | 214 | 14 | 4 | 526 | 6 | 585 | 0.0 | 566 |
| Msa0405760 | AT4G01950.1 | 46.735 | 490 | 245 | 10 | 48 | 527 | 36 | 519 | 1.05e-146 | 432 |
| Msa0405760 | AT4G01950.2 | 46.735 | 490 | 245 | 10 | 48 | 527 | 64 | 547 | 3.32e-146 | 431 |
| Msa0405760 | AT2G38110.1 | 46.061 | 495 | 250 | 8 | 46 | 529 | 10 | 498 | 3.10e-144 | 424 |
| Msa0405760 | AT1G02390.1 | 46.201 | 487 | 239 | 10 | 59 | 528 | 50 | 530 | 4.57e-139 | 412 |
| Msa0405760 | AT1G01610.1 | 43.205 | 493 | 262 | 9 | 45 | 526 | 9 | 494 | 3.02e-134 | 399 |
| Msa0405760 | AT3G11430.1 | 45.322 | 481 | 246 | 11 | 56 | 525 | 7 | 481 | 2.07e-130 | 389 |
| Msa0405760 | AT4G00400.1 | 42.394 | 493 | 267 | 8 | 44 | 526 | 8 | 493 | 1.23e-127 | 382 |
| Msa0405760 | AT5G06090.1 | 44.283 | 481 | 247 | 10 | 59 | 526 | 8 | 480 | 5.28e-127 | 380 |
| Msa0405760 | AT3G11325.1 | 32.972 | 461 | 209 | 9 | 70 | 526 | 6 | 370 | 1.62e-73 | 239 |
| Msa0405760 | AT3G11325.2 | 32.972 | 461 | 209 | 9 | 70 | 526 | 9 | 373 | 1.88e-73 | 239 |
Find 97 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTACTGTTTATGATAAT+TGG | 0.098443 | 3_2:+41093214 | None:intergenic |
| ATTAAACTCATTGTCTTTAT+AGG | 0.150817 | 3_2:+41090067 | None:intergenic |
| ATTTCACTGGTTTGATTTCT+AGG | 0.151271 | 3_2:-41092594 | Msa0405760:CDS |
| AGTGCTCTCATGGATTATTT+TGG | 0.183297 | 3_2:-41092550 | Msa0405760:CDS |
| CCAGCACAAGTGAGTTCTTT+TGG | 0.209499 | 3_2:+41089770 | None:intergenic |
| CTTCCATCATGAAATATTAA+TGG | 0.220853 | 3_2:+41090415 | None:intergenic |
| TTTATCCCTCCTTGTAATAT+TGG | 0.222515 | 3_2:+41089676 | None:intergenic |
| TAAAGACAATGAGTTTAATA+AGG | 0.265348 | 3_2:-41090063 | Msa0405760:CDS |
| AGAATGAATGGTTCCTTAAT+AGG | 0.296318 | 3_2:+41092965 | None:intergenic |
| GGATATAGAAGGCCTGATTT+AGG | 0.310254 | 3_2:-41092529 | Msa0405760:CDS |
| AGAAGGCCTGATTTAGGAAT+TGG | 0.322699 | 3_2:-41092523 | Msa0405760:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 3_2:+41090421 | None:intergenic |
| ACATTCATGATATCCTATTA+AGG | 0.327821 | 3_2:-41092978 | Msa0405760:CDS |
| GGACAATAGTTTATTACAAA+TGG | 0.339581 | 3_2:-41090300 | Msa0405760:CDS |
| CACTTGTGTGCCTAGAGTTA+TGG | 0.347773 | 3_2:-41092689 | Msa0405760:CDS |
| TCAATTTATAGATTATTTCT+TGG | 0.350275 | 3_2:-41090322 | Msa0405760:CDS |
| CATGGAGAATCTTAACCTTA+AGG | 0.353285 | 3_2:-41092752 | Msa0405760:CDS |
| TCCCTACAAGTTGTTCCTTC+AGG | 0.358949 | 3_2:+41089977 | None:intergenic |
| ATTGATAATGAAATTGCAAT+TGG | 0.363862 | 3_2:+41090340 | None:intergenic |
| GATAAATATATGATGTTAGC+TGG | 0.365163 | 3_2:-41089659 | Msa0405760:CDS |
| ATTTACTGTTTATGATAATT+GGG | 0.369243 | 3_2:+41093215 | None:intergenic |
| CAATTTATAGATTATTTCTT+GGG | 0.369337 | 3_2:-41090321 | Msa0405760:CDS |
| AAAGGAATTGGGTGATGCTT+TGG | 0.369618 | 3_2:-41089711 | Msa0405760:CDS |
| GAATGTCACAAACAAGTGTT+TGG | 0.370761 | 3_2:+41092995 | None:intergenic |
| AGCTAGTGGATTAAAATGTT+TGG | 0.371794 | 3_2:-41089855 | Msa0405760:CDS |
| AAGGCAACTAGCATGAAATA+AGG | 0.373236 | 3_2:+41092940 | None:intergenic |
| TAATTGTATGCAAAAGGAAT+TGG | 0.374696 | 3_2:-41089723 | Msa0405760:CDS |
| AAGGAATTGGGTGATGCTTT+GGG | 0.377029 | 3_2:-41089710 | Msa0405760:CDS |
| AAAAGAAGAAGTGAAAATTA+TGG | 0.394997 | 3_2:-41089619 | Msa0405760:exon |
| GACAATAGTTTATTACAAAT+GGG | 0.398640 | 3_2:-41090299 | Msa0405760:CDS |
| TTCATGCTAGTTGCCTTTGA+AGG | 0.401979 | 3_2:-41092934 | Msa0405760:CDS |
| TAGGCATGGTTTGGTTGATA+AGG | 0.411704 | 3_2:-41092575 | Msa0405760:CDS |
| TATGGTGGAAGGGTTTCTTA+AGG | 0.415468 | 3_2:-41092671 | Msa0405760:CDS |
| TCCCTTGGCATGATTGAACT+TGG | 0.423538 | 3_2:+41090451 | None:intergenic |
| AGATTCTCCATGTAAAACTT+TGG | 0.427361 | 3_2:+41092763 | None:intergenic |
| TAATATTGAAGTACTTGAAA+AGG | 0.432261 | 3_2:-41089795 | Msa0405760:CDS |
| GTGCTTCCAATTCCTAAATC+AGG | 0.432690 | 3_2:+41092517 | None:intergenic |
| AAATCACAATTCAAAATACT+AGG | 0.439229 | 3_2:+41093033 | None:intergenic |
| TTTGATTTCTAGGCATGGTT+TGG | 0.440519 | 3_2:-41092584 | Msa0405760:CDS |
| CAATCACATGGTAAAGCCTT+AGG | 0.442507 | 3_2:+41093151 | None:intergenic |
| AATTGTATGCAAAAGGAATT+GGG | 0.443174 | 3_2:-41089722 | Msa0405760:CDS |
| AAAGACAATGAGTTTAATAA+GGG | 0.455220 | 3_2:-41090062 | Msa0405760:CDS |
| ATACAATTAGCCACTTCAAA+AGG | 0.471416 | 3_2:+41089737 | None:intergenic |
| ACAAAACCTCACAAGCCTTA+AGG | 0.479431 | 3_2:+41092737 | None:intergenic |
| TTTGAGAAAACCTTTGACTA+CGG | 0.479760 | 3_2:-41090128 | Msa0405760:CDS |
| TGAAATAAGGAAAGAATGAA+TGG | 0.486593 | 3_2:+41092953 | None:intergenic |
| AGTGGCTAATTGTATGCAAA+AGG | 0.487706 | 3_2:-41089729 | Msa0405760:CDS |
| ACTGTTGGATGCTATTTCAC+TGG | 0.492281 | 3_2:-41092607 | Msa0405760:CDS |
| TAGGACATGAACAAAGTAAG+AGG | 0.498321 | 3_2:+41092890 | None:intergenic |
| CCAAAAGAACTCACTTGTGC+TGG | 0.501281 | 3_2:-41089770 | Msa0405760:CDS |
| ACTGGTTTGATTTCTAGGCA+TGG | 0.501346 | 3_2:-41092589 | Msa0405760:CDS |
| GTCCTGAAGGAACAACTTGT+AGG | 0.502469 | 3_2:-41089979 | Msa0405760:CDS |
| GAACTAAATCTCAATAGATA+AGG | 0.509333 | 3_2:+41089953 | None:intergenic |
| TGATAAGGATAGTGCTCTCA+TGG | 0.519997 | 3_2:-41092560 | Msa0405760:CDS |
| AAAGAACTCACTTGTGCTGG+TGG | 0.522091 | 3_2:-41089767 | Msa0405760:CDS |
| AAAATACTAGGAAAGGTTGA+AGG | 0.524012 | 3_2:+41093045 | None:intergenic |
| AATGTCACAAACAAGTGTTT+GGG | 0.534593 | 3_2:+41092996 | None:intergenic |
| AGTACTTCAATATTATAACT+AGG | 0.538955 | 3_2:+41089803 | None:intergenic |
| ATAAATATATGATGTTAGCT+GGG | 0.539552 | 3_2:-41089658 | Msa0405760:CDS |
| GTGCCTAGAGTTATGGTGGA+AGG | 0.542356 | 3_2:-41092682 | Msa0405760:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.544073 | 3_2:-41090418 | Msa0405760:CDS |
| TCAATATTATAACTAGGCCA+TGG | 0.546573 | 3_2:+41089809 | None:intergenic |
| CTTGCATTAGTAGCATATAG+TGG | 0.547683 | 3_2:-41090274 | Msa0405760:CDS |
| TCTTAACCTTAAGGCTTGTG+AGG | 0.549494 | 3_2:-41092743 | Msa0405760:CDS |
| TAAAATGCTACCACCTTCAA+AGG | 0.551003 | 3_2:+41092921 | None:intergenic |
| ACAATTCAAAATACTAGGAA+AGG | 0.557117 | 3_2:+41093038 | None:intergenic |
| TCCTGAAGGAACAACTTGTA+GGG | 0.557385 | 3_2:-41089978 | Msa0405760:CDS |
| ATGCTAGTTGCCTTTGAAGG+TGG | 0.557422 | 3_2:-41092931 | Msa0405760:CDS |
| GCTACTGAGTTACACACTGT+TGG | 0.557540 | 3_2:-41092622 | Msa0405760:CDS |
| CTATAAGTTACCGTAGTCAA+AGG | 0.562718 | 3_2:+41090118 | None:intergenic |
| TGCCTAGAGTTATGGTGGAA+GGG | 0.568356 | 3_2:-41092681 | Msa0405760:CDS |
| ATGATGTTAGCTGGGAATGA+AGG | 0.571083 | 3_2:-41089650 | Msa0405760:CDS |
| AGGACATGGAAATGATTGCA+AGG | 0.571708 | 3_2:-41092795 | Msa0405760:CDS |
| GTCCAAGTTCAATCATGCCA+AGG | 0.578416 | 3_2:-41090453 | Msa0405760:CDS |
| GGTATAACTATAAATATCAA+AGG | 0.580246 | 3_2:-41090253 | Msa0405760:CDS |
| TGCTGATGAGATTGTTCCTG+TGG | 0.580570 | 3_2:-41089915 | Msa0405760:CDS |
| ATGCAAAGGTTGTTAAGTGA+AGG | 0.581573 | 3_2:-41090016 | Msa0405760:CDS |
| TCCAAGTTCAATCATGCCAA+GGG | 0.585347 | 3_2:-41090452 | Msa0405760:CDS |
| TGGACTTAAAATAAAGGACA+TGG | 0.586187 | 3_2:-41092809 | Msa0405760:CDS |
| GATTTAGTTGTGTGTCCTGA+AGG | 0.591518 | 3_2:-41089992 | Msa0405760:CDS |
| ACATTAGCATTCATAGCCAC+AGG | 0.592352 | 3_2:+41089899 | None:intergenic |
| GGACATGGAAATGATTGCAA+GGG | 0.595734 | 3_2:-41092794 | Msa0405760:CDS |
| TTGAGTGTACCAATATTACA+AGG | 0.604181 | 3_2:-41089685 | Msa0405760:CDS |
| AACCCTTCCACCATAACTCT+AGG | 0.605896 | 3_2:+41092679 | None:intergenic |
| CAATCCAAACACACCCTCAG+TGG | 0.609422 | 3_2:+41089556 | None:intergenic |
| TAGAGAGTTGATGAATGTGT+AGG | 0.609812 | 3_2:+41090379 | None:intergenic |
| ACAATAGTTTATTACAAATG+GGG | 0.618107 | 3_2:-41090298 | Msa0405760:CDS |
| CAACTCTCTACATGTTCATG+TGG | 0.618107 | 3_2:-41090366 | Msa0405760:CDS |
| TGAGAGAAACTTAAATACAA+TGG | 0.621277 | 3_2:-41093190 | Msa0405760:exon |
| AGAGAGTTGATGAATGTGTA+GGG | 0.625414 | 3_2:+41090380 | None:intergenic |
| AAGATAGAGAAACAATGCAA+AGG | 0.634514 | 3_2:-41090030 | Msa0405760:CDS |
| GTGTACCAATATTACAAGGA+GGG | 0.636506 | 3_2:-41089681 | Msa0405760:CDS |
| ATAATGATAGGAAGCTTATG+TGG | 0.639396 | 3_2:-41090491 | Msa0405760:intron |
| TTGTGTGCCTAGAGTTATGG+TGG | 0.640186 | 3_2:-41092686 | Msa0405760:CDS |
| TACTCTATGTTTGTACACAT+AGG | 0.654259 | 3_2:-41090183 | Msa0405760:CDS |
| AGTGTACCAATATTACAAGG+AGG | 0.687118 | 3_2:-41089682 | Msa0405760:CDS |
| AACATGATTTAACAATCACA+TGG | 0.695379 | 3_2:+41093139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATACTTTTAAAAAATTTA+TGG | + | chr3_2:41090383-41090402 | None:intergenic | 10.0% |
| !!! | AAATTTTTTAAAAGTATCTT+TGG | - | chr3_2:41090384-41090403 | Msa0405760:CDS | 10.0% |
| !! | TTAATATGGAATAATTAATA+TGG | + | chr3_2:41092251-41092270 | None:intergenic | 10.0% |
| !!! | TTGTTATTGAATTTTTTTTA+GGG | + | chr3_2:41092576-41092595 | None:intergenic | 10.0% |
| !!! | TTTGTTATTGAATTTTTTTT+AGG | + | chr3_2:41092577-41092596 | None:intergenic | 10.0% |
| !! | AAAAATTCAATAACAAATAA+AGG | - | chr3_2:41092580-41092599 | Msa0405760:CDS | 10.0% |
| !! | ATTTACTGTTTATGATAATT+GGG | + | chr3_2:41089576-41089595 | None:intergenic | 15.0% |
| !! | TATTTACTGTTTATGATAAT+TGG | + | chr3_2:41089577-41089596 | None:intergenic | 15.0% |
| !!! | TATTTTGAATTGTGATTTAA+AGG | - | chr3_2:41089760-41089779 | Msa0405760:CDS | 15.0% |
| !!! | ATTTTGAATTGTGATTTAAA+GGG | - | chr3_2:41089761-41089780 | Msa0405760:CDS | 15.0% |
| !!! | TTTTAGCTATATTATATTCT+TGG | - | chr3_2:41090353-41090372 | Msa0405760:CDS | 15.0% |
| !! | ATTAATTGTATACATTCTAT+AGG | - | chr3_2:41090433-41090452 | Msa0405760:CDS | 15.0% |
| !!! | AAGTTTTTATTTTTCTTGAT+AGG | - | chr3_2:41090460-41090479 | Msa0405760:CDS | 15.0% |
| !! | GGTAGTTAAAATTTAATAAT+GGG | - | chr3_2:41091239-41091258 | Msa0405760:intron | 15.0% |
| !! | AATTACTATTGATCATTAAT+CGG | - | chr3_2:41091586-41091605 | Msa0405760:intron | 15.0% |
| !! | AATATGGAAAATGAAATTAA+AGG | + | chr3_2:41092235-41092254 | None:intergenic | 15.0% |
| !! | CTATCATTATCATATATTTA+TGG | + | chr3_2:41092287-41092306 | None:intergenic | 15.0% |
| !!! | CATAAATATATGATAATGAT+AGG | - | chr3_2:41092285-41092304 | Msa0405760:intron | 15.0% |
| !!! | TCAATTTATAGATTATTTCT+TGG | - | chr3_2:41092466-41092485 | Msa0405760:intron | 15.0% |
| !!! | CAATTTATAGATTATTTCTT+GGG | - | chr3_2:41092467-41092486 | Msa0405760:intron | 15.0% |
| !! | AAATCACAATTCAAAATACT+AGG | + | chr3_2:41089758-41089777 | None:intergenic | 20.0% |
| !!! | TTTTGAATTGTGATTTAAAG+GGG | - | chr3_2:41089762-41089781 | Msa0405760:CDS | 20.0% |
| !!! | TTTTTGTGGACTTAAAATAA+AGG | - | chr3_2:41089973-41089992 | Msa0405760:CDS | 20.0% |
| !!! | TCATTTTATCTCTTATTGTA+AGG | - | chr3_2:41090309-41090328 | Msa0405760:CDS | 20.0% |
| !! | TAGTAAGTTCTTAAAATGAA+AGG | - | chr3_2:41090489-41090508 | Msa0405760:intron | 20.0% |
| !!! | AATATTTTACATGTGTTTCT+AGG | - | chr3_2:41090738-41090757 | Msa0405760:intron | 20.0% |
| !!! | CAATTCAAATTTAAGTTTGT+CGG | + | chr3_2:41091047-41091066 | None:intergenic | 20.0% |
| !! | CAAACTTAAATTTGAATTGT+TGG | - | chr3_2:41091048-41091067 | Msa0405760:intron | 20.0% |
| !! | ATAAATATGTTCCGTATAAA+TGG | - | chr3_2:41091074-41091093 | Msa0405760:intron | 20.0% |
| !! | GGGTAGTTAAAATTTAATAA+TGG | - | chr3_2:41091238-41091257 | Msa0405760:intron | 20.0% |
| !! | ATAAAAGTAGGAAAATTCTA+TGG | - | chr3_2:41091264-41091283 | Msa0405760:intron | 20.0% |
| !!! | TTAATGGACAATACTTTTAT+GGG | + | chr3_2:41091699-41091718 | None:intergenic | 20.0% |
| !!! | TTTAATGGACAATACTTTTA+TGG | + | chr3_2:41091700-41091719 | None:intergenic | 20.0% |
| !! | CATTAAACTCTCATTAATAT+CGG | - | chr3_2:41091713-41091732 | Msa0405760:intron | 20.0% |
| !! | TTGTCAAAATATATGTACAA+AGG | - | chr3_2:41091855-41091874 | Msa0405760:intron | 20.0% |
| !! | AACAATGTATAATATATGCA+AGG | - | chr3_2:41091921-41091940 | Msa0405760:intron | 20.0% |
| !! | TTGTCAAAAAAAGTAAAATG+TGG | - | chr3_2:41092092-41092111 | Msa0405760:intron | 20.0% |
| !!! | TGTACGTTTTCATTTATTTT+TGG | - | chr3_2:41092129-41092148 | Msa0405760:intron | 20.0% |
| !!! | TTTTGGCATATGATTATAAT+AGG | - | chr3_2:41092146-41092165 | Msa0405760:intron | 20.0% |
| !! | ATATATTTATGGAGTTAGAT+GGG | + | chr3_2:41092276-41092295 | None:intergenic | 20.0% |
| !!! | ATTGATAATGAAATTGCAAT+TGG | + | chr3_2:41092451-41092470 | None:intergenic | 20.0% |
| !! | GACAATAGTTTATTACAAAT+GGG | - | chr3_2:41092489-41092508 | Msa0405760:CDS | 20.0% |
| !! | ACAATAGTTTATTACAAATG+GGG | - | chr3_2:41092490-41092509 | Msa0405760:CDS | 20.0% |
| !! | GGTATAACTATAAATATCAA+AGG | - | chr3_2:41092535-41092554 | Msa0405760:CDS | 20.0% |
| !! | ATTAAACTCATTGTCTTTAT+AGG | + | chr3_2:41092724-41092743 | None:intergenic | 20.0% |
| !! | TAAAGACAATGAGTTTAATA+AGG | - | chr3_2:41092725-41092744 | Msa0405760:CDS | 20.0% |
| !! | AAAGACAATGAGTTTAATAA+GGG | - | chr3_2:41092726-41092745 | Msa0405760:CDS | 20.0% |
| !! | AGTACTTCAATATTATAACT+AGG | + | chr3_2:41092988-41093007 | None:intergenic | 20.0% |
| !!! | TAATATTGAAGTACTTGAAA+AGG | - | chr3_2:41092993-41093012 | Msa0405760:CDS | 20.0% |
| !! | ATAAATATATGATGTTAGCT+GGG | - | chr3_2:41093130-41093149 | Msa0405760:CDS | 20.0% |
| !! | AAAAGAAGAAGTGAAAATTA+TGG | - | chr3_2:41093169-41093188 | Msa0405760:CDS | 20.0% |
| ! | TGAGAGAAACTTAAATACAA+TGG | - | chr3_2:41089598-41089617 | Msa0405760:three_prime_UTR | 25.0% |
| ! | AACATGATTTAACAATCACA+TGG | + | chr3_2:41089652-41089671 | None:intergenic | 25.0% |
| ! | ACAATTCAAAATACTAGGAA+AGG | + | chr3_2:41089753-41089772 | None:intergenic | 25.0% |
| ! | ACATTCATGATATCCTATTA+AGG | - | chr3_2:41089810-41089829 | Msa0405760:CDS | 25.0% |
| ! | TGAAATAAGGAAAGAATGAA+TGG | + | chr3_2:41089838-41089857 | None:intergenic | 25.0% |
| !!! | ATGATCTTCATTACTTTTTG+TGG | - | chr3_2:41089959-41089978 | Msa0405760:CDS | 25.0% |
| !! | AGTTTTACCAAAGTTTTACA+TGG | - | chr3_2:41090018-41090037 | Msa0405760:CDS | 25.0% |
| !!! | TGGATTATTTTGGATATAGA+AGG | - | chr3_2:41090248-41090267 | Msa0405760:CDS | 25.0% |
| !!! | TTAAAAGTATCTTTGGATAG+AGG | - | chr3_2:41090391-41090410 | Msa0405760:CDS | 25.0% |
| !!! | TTATTTTTCTTGATAGGTCT+AGG | - | chr3_2:41090466-41090485 | Msa0405760:CDS | 25.0% |
| ! | AGTTCTTAAAATGAAAGGAA+TGG | - | chr3_2:41090494-41090513 | Msa0405760:intron | 25.0% |
| ! | GCTCAAATCAAATGTTTATA+GGG | + | chr3_2:41090558-41090577 | None:intergenic | 25.0% |
| !! | ATATGCATATGAACATTTTC+TGG | + | chr3_2:41090580-41090599 | None:intergenic | 25.0% |
| ! | AGAAACATTCAATGTCAAAA+AGG | + | chr3_2:41090616-41090635 | None:intergenic | 25.0% |
| ! | TGACTTATAACTAGAAAACT+GGG | + | chr3_2:41090688-41090707 | None:intergenic | 25.0% |
| ! | AAATATTAAAATGTCTCCAG+CGG | + | chr3_2:41090725-41090744 | None:intergenic | 25.0% |
| ! | TTGTAATAACTTACAGTTAC+AGG | + | chr3_2:41090920-41090939 | None:intergenic | 25.0% |
| ! | AAACACAAGTACCATTTATA+CGG | + | chr3_2:41091088-41091107 | None:intergenic | 25.0% |
| !! | ATTTTCATGAAGGAAAATAG+TGG | + | chr3_2:41091179-41091198 | None:intergenic | 25.0% |
| !!! | GTTGATTTTGATTTTCATGA+AGG | + | chr3_2:41091189-41091208 | None:intergenic | 25.0% |
| !! | TAATAATGGGACATAAAAGT+AGG | - | chr3_2:41091252-41091271 | Msa0405760:intron | 25.0% |
| ! | CGATATTAATGAGAGTTTAA+TGG | + | chr3_2:41091715-41091734 | None:intergenic | 25.0% |
| !! | TTTTTAAACCCACAAGTATA+AGG | - | chr3_2:41092024-41092043 | Msa0405760:intron | 25.0% |
| ! | GTAGTTAGTTAGATAAGATA+AGG | + | chr3_2:41092191-41092210 | None:intergenic | 25.0% |
| ! | CATATATTTATGGAGTTAGA+TGG | + | chr3_2:41092277-41092296 | None:intergenic | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | + | chr3_2:41092370-41092389 | None:intergenic | 25.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | - | chr3_2:41092370-41092389 | Msa0405760:intron | 25.0% |
| ! | CTTCCATCATGAAATATTAA+TGG | + | chr3_2:41092376-41092395 | None:intergenic | 25.0% |
| ! | GGACAATAGTTTATTACAAA+TGG | - | chr3_2:41092488-41092507 | Msa0405760:CDS | 25.0% |
| ! | GAACTAAATCTCAATAGATA+AGG | + | chr3_2:41092838-41092857 | None:intergenic | 25.0% |
| !!! | TTCTATTTTTGATGAATCCA+TGG | - | chr3_2:41092962-41092981 | Msa0405760:CDS | 25.0% |
| ! | TAATTGTATGCAAAAGGAAT+TGG | - | chr3_2:41093065-41093084 | Msa0405760:CDS | 25.0% |
| ! | AATTGTATGCAAAAGGAATT+GGG | - | chr3_2:41093066-41093085 | Msa0405760:CDS | 25.0% |
| ! | GATAAATATATGATGTTAGC+TGG | - | chr3_2:41093129-41093148 | Msa0405760:CDS | 25.0% |
| ! | TGTTTCTTTTAGTACTCCTA+AGG | - | chr3_2:41089621-41089640 | Msa0405760:exon | 30.0% |
| AAAATACTAGGAAAGGTTGA+AGG | + | chr3_2:41089746-41089765 | None:intergenic | 30.0% | |
| AATGTCACAAACAAGTGTTT+GGG | + | chr3_2:41089795-41089814 | None:intergenic | 30.0% | |
| AGAATGAATGGTTCCTTAAT+AGG | + | chr3_2:41089826-41089845 | None:intergenic | 30.0% | |
| ! | TAGCTCAAAAAGCATAACAT+AGG | + | chr3_2:41089920-41089939 | None:intergenic | 30.0% |
| TGGACTTAAAATAAAGGACA+TGG | - | chr3_2:41089979-41089998 | Msa0405760:CDS | 30.0% | |
| AGATTCTCCATGTAAAACTT+TGG | + | chr3_2:41090028-41090047 | None:intergenic | 30.0% | |
| !! | ATTTCACTGGTTTGATTTCT+AGG | - | chr3_2:41090194-41090213 | Msa0405760:CDS | 30.0% |
| TTTGGATAGAGGAAAATGAA+AGG | - | chr3_2:41090402-41090421 | Msa0405760:CDS | 30.0% | |
| GGCTCAAATCAAATGTTTAT+AGG | + | chr3_2:41090559-41090578 | None:intergenic | 30.0% | |
| TTCATATGCATATCATGAGA+TGG | - | chr3_2:41090587-41090606 | Msa0405760:intron | 30.0% | |
| GCAGTAGTTAAACTACAATT+GGG | + | chr3_2:41090666-41090685 | None:intergenic | 30.0% | |
| CTGACTTATAACTAGAAAAC+TGG | + | chr3_2:41090689-41090708 | None:intergenic | 30.0% | |
| !!! | GTTTTCTAGTTATAAGTCAG+CGG | - | chr3_2:41090689-41090708 | Msa0405760:intron | 30.0% |
| TTTCATATCATGATGACTCA+TGG | - | chr3_2:41090786-41090805 | Msa0405760:intron | 30.0% | |
| TAATAACTTACAGTTACAGG+TGG | + | chr3_2:41090917-41090936 | None:intergenic | 30.0% | |
| TTGTCAATACAAGTGAAACT+AGG | + | chr3_2:41090954-41090973 | None:intergenic | 30.0% | |
| ! | ACTTGTATTGACAAGTTTAG+TGG | - | chr3_2:41090960-41090979 | Msa0405760:intron | 30.0% |
| TCTATGCATATCCAATGAAT+CGG | + | chr3_2:41091118-41091137 | None:intergenic | 30.0% | |
| ! | GATGAATTGATGACACTATA+TGG | + | chr3_2:41091391-41091410 | None:intergenic | 30.0% |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr3_2:41091471-41091490 | None:intergenic | 30.0% | |
| TTTCCAAAAAAGTCAGTTTC+CGG | - | chr3_2:41091656-41091675 | Msa0405760:intron | 30.0% | |
| TATGTACAAAGGACTAAATG+TGG | - | chr3_2:41091866-41091885 | Msa0405760:intron | 30.0% | |
| !!! | TACCCCACTTTTTTTTTTTG+TGG | + | chr3_2:41091966-41091985 | None:intergenic | 30.0% |
| !! | TATTTTTGCTTGCATCATCT+GGG | + | chr3_2:41092050-41092069 | None:intergenic | 30.0% |
| !!! | TTATTTTTGCTTGCATCATC+TGG | + | chr3_2:41092051-41092070 | None:intergenic | 30.0% |
| AAATGAAAACGTACAGCTTT+GGG | + | chr3_2:41092124-41092143 | None:intergenic | 30.0% | |
| TAAATGAAAACGTACAGCTT+TGG | + | chr3_2:41092125-41092144 | None:intergenic | 30.0% | |
| GAGTTAGATGGGAATTAATA+TGG | + | chr3_2:41092265-41092284 | None:intergenic | 30.0% | |
| ATAATGATAGGAAGCTTATG+TGG | - | chr3_2:41092297-41092316 | Msa0405760:intron | 30.0% | |
| TACTCTATGTTTGTACACAT+AGG | - | chr3_2:41092605-41092624 | Msa0405760:CDS | 30.0% | |
| AAACTCATGCTAAGAAAAAC+AGG | + | chr3_2:41092643-41092662 | None:intergenic | 30.0% | |
| TTTGAGAAAACCTTTGACTA+CGG | - | chr3_2:41092660-41092679 | Msa0405760:CDS | 30.0% | |
| AAGATAGAGAAACAATGCAA+AGG | - | chr3_2:41092758-41092777 | Msa0405760:CDS | 30.0% | |
| ! | GCTAATGTGAGTATGTTTTA+TGG | - | chr3_2:41092904-41092923 | Msa0405760:CDS | 30.0% |
| !! | AGCTAGTGGATTAAAATGTT+TGG | - | chr3_2:41092933-41092952 | Msa0405760:CDS | 30.0% |
| TCAATATTATAACTAGGCCA+TGG | + | chr3_2:41092982-41093001 | None:intergenic | 30.0% | |
| ATACAATTAGCCACTTCAAA+AGG | + | chr3_2:41093054-41093073 | None:intergenic | 30.0% | |
| TTGAGTGTACCAATATTACA+AGG | - | chr3_2:41093103-41093122 | Msa0405760:CDS | 30.0% | |
| TTTATCCCTCCTTGTAATAT+TGG | + | chr3_2:41093115-41093134 | None:intergenic | 30.0% | |
| GAATGTCACAAACAAGTGTT+TGG | + | chr3_2:41089796-41089815 | None:intergenic | 35.0% | |
| AAGGCAACTAGCATGAAATA+AGG | + | chr3_2:41089851-41089870 | None:intergenic | 35.0% | |
| TAAAATGCTACCACCTTCAA+AGG | + | chr3_2:41089870-41089889 | None:intergenic | 35.0% | |
| TAGGACATGAACAAAGTAAG+AGG | + | chr3_2:41089901-41089920 | None:intergenic | 35.0% | |
| CATGGAGAATCTTAACCTTA+AGG | - | chr3_2:41090036-41090055 | Msa0405760:CDS | 35.0% | |
| ! | TTTGATTTCTAGGCATGGTT+TGG | - | chr3_2:41090204-41090223 | Msa0405760:CDS | 35.0% |
| !! | AGTGCTCTCATGGATTATTT+TGG | - | chr3_2:41090238-41090257 | Msa0405760:CDS | 35.0% |
| GAGGAAAATGAAAGGAAGTT+AGG | - | chr3_2:41090410-41090429 | Msa0405760:CDS | 35.0% | |
| GGCAGTAGTTAAACTACAAT+TGG | + | chr3_2:41090667-41090686 | None:intergenic | 35.0% | |
| TTACAGTTACAGGTGGTTAA+GGG | + | chr3_2:41090910-41090929 | None:intergenic | 35.0% | |
| ! | TTTAAGTTTGTCGGTACACA+AGG | + | chr3_2:41091038-41091057 | None:intergenic | 35.0% |
| !! | GTTTTCCTTAACCGATTCAT+TGG | - | chr3_2:41091104-41091123 | Msa0405760:intron | 35.0% |
| CATATCCAATGAATCGGTTA+AGG | + | chr3_2:41091112-41091131 | None:intergenic | 35.0% | |
| ATATCACCTCACTCATGTAT+GGG | - | chr3_2:41091218-41091237 | Msa0405760:intron | 35.0% | |
| ! | AGTCATGAGAATGACTTTTC+TGG | - | chr3_2:41091290-41091309 | Msa0405760:intron | 35.0% |
| ACACCTCACTATTTGTATAG+TGG | - | chr3_2:41091350-41091369 | Msa0405760:intron | 35.0% | |
| ATGCCACTATACAAATAGTG+AGG | + | chr3_2:41091356-41091375 | None:intergenic | 35.0% | |
| TGTTACACTTGAAACAAGGT+AGG | + | chr3_2:41091447-41091466 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr3_2:41091470-41091489 | None:intergenic | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr3_2:41091472-41091491 | None:intergenic | 35.0% | |
| TAGTAATGCTTGCAACATCT+TGG | + | chr3_2:41091562-41091581 | None:intergenic | 35.0% | |
| ! | TACTTTTATGGGAGCTTCTA+TGG | + | chr3_2:41091688-41091707 | None:intergenic | 35.0% |
| AAAAGTGATCCAAGCGAAAT+AGG | - | chr3_2:41091828-41091847 | Msa0405760:intron | 35.0% | |
| AAAGTGATCCAAGCGAAATA+GGG | - | chr3_2:41091829-41091848 | Msa0405760:intron | 35.0% | |
| !!! | ACTTTTTTTTTTTGTGGCCG+TGG | + | chr3_2:41091960-41091979 | None:intergenic | 35.0% |
| ACGGCCACAAAAAAAAAAAG+TGG | - | chr3_2:41091959-41091978 | Msa0405760:intron | 35.0% | |
| CGGCCACAAAAAAAAAAAGT+GGG | - | chr3_2:41091960-41091979 | Msa0405760:intron | 35.0% | |
| GGCCACAAAAAAAAAAAGTG+GGG | - | chr3_2:41091961-41091980 | Msa0405760:intron | 35.0% | |
| !! | AGAGAGTTGATGAATGTGTA+GGG | + | chr3_2:41092411-41092430 | None:intergenic | 35.0% |
| !! | TAGAGAGTTGATGAATGTGT+AGG | + | chr3_2:41092412-41092431 | None:intergenic | 35.0% |
| CTTGCATTAGTAGCATATAG+TGG | - | chr3_2:41092514-41092533 | Msa0405760:CDS | 35.0% | |
| CTATAAGTTACCGTAGTCAA+AGG | + | chr3_2:41092673-41092692 | None:intergenic | 35.0% | |
| ATGCAAAGGTTGTTAAGTGA+AGG | - | chr3_2:41092772-41092791 | Msa0405760:CDS | 35.0% | |
| ! | TTTTATGGTACAACAGCTAG+TGG | - | chr3_2:41092919-41092938 | Msa0405760:CDS | 35.0% |
| AGTGGCTAATTGTATGCAAA+AGG | - | chr3_2:41093059-41093078 | Msa0405760:CDS | 35.0% | |
| AGTGTACCAATATTACAAGG+AGG | - | chr3_2:41093106-41093125 | Msa0405760:CDS | 35.0% | |
| GTGTACCAATATTACAAGGA+GGG | - | chr3_2:41093107-41093126 | Msa0405760:CDS | 35.0% | |
| ! | TACATAACTCTTTTCCACTG+AGG | - | chr3_2:41093218-41093237 | Msa0405760:five_prime_UTR | 35.0% |
| ! | ACATAACTCTTTTCCACTGA+GGG | - | chr3_2:41093219-41093238 | Msa0405760:five_prime_UTR | 35.0% |
| CAATCACATGGTAAAGCCTT+AGG | + | chr3_2:41089640-41089659 | None:intergenic | 40.0% | |
| TTCATGCTAGTTGCCTTTGA+AGG | - | chr3_2:41089854-41089873 | Msa0405760:CDS | 40.0% | |
| AGGACATGGAAATGATTGCA+AGG | - | chr3_2:41089993-41090012 | Msa0405760:CDS | 40.0% | |
| GGACATGGAAATGATTGCAA+GGG | - | chr3_2:41089994-41090013 | Msa0405760:CDS | 40.0% | |
| TCTTAACCTTAAGGCTTGTG+AGG | - | chr3_2:41090045-41090064 | Msa0405760:CDS | 40.0% | |
| ACAAAACCTCACAAGCCTTA+AGG | + | chr3_2:41090054-41090073 | None:intergenic | 40.0% | |
| !! | TGTGAGGTTTTGTCTTCAGT+AGG | - | chr3_2:41090061-41090080 | Msa0405760:CDS | 40.0% |
| !! | GTGAGGTTTTGTCTTCAGTA+GGG | - | chr3_2:41090062-41090081 | Msa0405760:CDS | 40.0% |
| ! | TATGGTGGAAGGGTTTCTTA+AGG | - | chr3_2:41090117-41090136 | Msa0405760:CDS | 40.0% |
| !! | ACTGTTGGATGCTATTTCAC+TGG | - | chr3_2:41090181-41090200 | Msa0405760:CDS | 40.0% |
| !! | ACTGGTTTGATTTCTAGGCA+TGG | - | chr3_2:41090199-41090218 | Msa0405760:CDS | 40.0% |
| !! | TAGGCATGGTTTGGTTGATA+AGG | - | chr3_2:41090213-41090232 | Msa0405760:CDS | 40.0% |
| TGATAAGGATAGTGCTCTCA+TGG | - | chr3_2:41090228-41090247 | Msa0405760:CDS | 40.0% | |
| GGATATAGAAGGCCTGATTT+AGG | - | chr3_2:41090259-41090278 | Msa0405760:CDS | 40.0% | |
| AGAAGGCCTGATTTAGGAAT+TGG | - | chr3_2:41090265-41090284 | Msa0405760:CDS | 40.0% | |
| GTGCTTCCAATTCCTAAATC+AGG | + | chr3_2:41090274-41090293 | None:intergenic | 40.0% | |
| GGTAAGAAGTTGAGATGTAG+GGG | + | chr3_2:41090858-41090877 | None:intergenic | 40.0% | |
| GGGTAAGAAGTTGAGATGTA+GGG | + | chr3_2:41090859-41090878 | None:intergenic | 40.0% | |
| CAGGTGGTTAAGGGTAAAAT+GGG | + | chr3_2:41090901-41090920 | None:intergenic | 40.0% | |
| ACAGGTGGTTAAGGGTAAAA+TGG | + | chr3_2:41090902-41090921 | None:intergenic | 40.0% | |
| CTTACAGTTACAGGTGGTTA+AGG | + | chr3_2:41090911-41090930 | None:intergenic | 40.0% | |
| CATATCACCTCACTCATGTA+TGG | - | chr3_2:41091217-41091236 | Msa0405760:intron | 40.0% | |
| TAACTACCCATACATGAGTG+AGG | + | chr3_2:41091227-41091246 | None:intergenic | 40.0% | |
| !!! | AGTCCGGAAACTGACTTTTT+TGG | + | chr3_2:41091662-41091681 | None:intergenic | 40.0% |
| GACAAATTCCCTATTTCGCT+TGG | + | chr3_2:41091840-41091859 | None:intergenic | 40.0% | |
| GTACAAAGGACTAAATGTGG+AGG | - | chr3_2:41091869-41091888 | Msa0405760:intron | 40.0% | |
| TTCTATGAGTTAAGCTCACG+AGG | + | chr3_2:41091902-41091921 | None:intergenic | 40.0% | |
| TCCAAGTTCAATCATGCCAA+GGG | - | chr3_2:41092336-41092355 | Msa0405760:intron | 40.0% | |
| CAACTCTCTACATGTTCATG+TGG | - | chr3_2:41092422-41092441 | Msa0405760:intron | 40.0% | |
| GATTTAGTTGTGTGTCCTGA+AGG | - | chr3_2:41092796-41092815 | Msa0405760:CDS | 40.0% | |
| TCCTGAAGGAACAACTTGTA+GGG | - | chr3_2:41092810-41092829 | Msa0405760:CDS | 40.0% | |
| ACATTAGCATTCATAGCCAC+AGG | + | chr3_2:41092892-41092911 | None:intergenic | 40.0% | |
| !! | TGGAAAGTCTCCTTTTGAAG+TGG | - | chr3_2:41093041-41093060 | Msa0405760:CDS | 40.0% |
| AAAGGAATTGGGTGATGCTT+TGG | - | chr3_2:41093077-41093096 | Msa0405760:CDS | 40.0% | |
| AAGGAATTGGGTGATGCTTT+GGG | - | chr3_2:41093078-41093097 | Msa0405760:CDS | 40.0% | |
| ATGATGTTAGCTGGGAATGA+AGG | - | chr3_2:41093138-41093157 | Msa0405760:CDS | 40.0% | |
| ! | ATGCTAGTTGCCTTTGAAGG+TGG | - | chr3_2:41089857-41089876 | Msa0405760:CDS | 45.0% |
| CACTTGTGTGCCTAGAGTTA+TGG | - | chr3_2:41090099-41090118 | Msa0405760:CDS | 45.0% | |
| TTGTGTGCCTAGAGTTATGG+TGG | - | chr3_2:41090102-41090121 | Msa0405760:CDS | 45.0% | |
| ! | TGCCTAGAGTTATGGTGGAA+GGG | - | chr3_2:41090107-41090126 | Msa0405760:CDS | 45.0% |
| AACCCTTCCACCATAACTCT+AGG | + | chr3_2:41090112-41090131 | None:intergenic | 45.0% | |
| GCTACTGAGTTACACACTGT+TGG | - | chr3_2:41090166-41090185 | Msa0405760:CDS | 45.0% | |
| GGGGTAAGAAGTTGAGATGT+AGG | + | chr3_2:41090860-41090879 | None:intergenic | 45.0% | |
| GGGTAAAATGGGAAATCCGT+TGG | + | chr3_2:41090890-41090909 | None:intergenic | 45.0% | |
| GTCGGTACACAAGGCTAATT+TGG | + | chr3_2:41091029-41091048 | None:intergenic | 45.0% | |
| ! | GGGGTGTTACACTTGAAACA+AGG | + | chr3_2:41091451-41091470 | None:intergenic | 45.0% |
| AAGGTCCAGAGTACAAACCA+CGG | - | chr3_2:41091940-41091959 | Msa0405760:intron | 45.0% | |
| ! | CATCTGGGCCTTATACTTGT+GGG | + | chr3_2:41092035-41092054 | None:intergenic | 45.0% |
| ! | TCATCTGGGCCTTATACTTG+TGG | + | chr3_2:41092036-41092055 | None:intergenic | 45.0% |
| GTCCAAGTTCAATCATGCCA+AGG | - | chr3_2:41092335-41092354 | Msa0405760:intron | 45.0% | |
| TCCCTTGGCATGATTGAACT+TGG | + | chr3_2:41092340-41092359 | None:intergenic | 45.0% | |
| !!! | GGCTTTGGATACTTTTCCCT+TGG | + | chr3_2:41092355-41092374 | None:intergenic | 45.0% |
| GTCCTGAAGGAACAACTTGT+AGG | - | chr3_2:41092809-41092828 | Msa0405760:CDS | 45.0% | |
| TCCCTACAAGTTGTTCCTTC+AGG | + | chr3_2:41092814-41092833 | None:intergenic | 45.0% | |
| TGCTGATGAGATTGTTCCTG+TGG | - | chr3_2:41092873-41092892 | Msa0405760:CDS | 45.0% | |
| ! | CCAGCACAAGTGAGTTCTTT+TGG | + | chr3_2:41093021-41093040 | None:intergenic | 45.0% |
| CCAAAAGAACTCACTTGTGC+TGG | - | chr3_2:41093018-41093037 | Msa0405760:CDS | 45.0% | |
| AAAGAACTCACTTGTGCTGG+TGG | - | chr3_2:41093021-41093040 | Msa0405760:CDS | 45.0% | |
| !! | TTTTCCACTGAGGGTGTGTT+TGG | - | chr3_2:41093228-41093247 | Msa0405760:five_prime_UTR | 45.0% |
| ! | GTGCCTAGAGTTATGGTGGA+AGG | - | chr3_2:41090106-41090125 | Msa0405760:CDS | 50.0% |
| CAGCGGTATTTAACTACCGC+TGG | - | chr3_2:41090706-41090725 | Msa0405760:intron | 50.0% | |
| TCTTACCCCCACAAGACCAA+CGG | - | chr3_2:41090871-41090890 | Msa0405760:intron | 50.0% | |
| !! | GAAATCCGTTGGTCTTGTGG+GGG | + | chr3_2:41090879-41090898 | None:intergenic | 50.0% |
| !! | GGAAATCCGTTGGTCTTGTG+GGG | + | chr3_2:41090880-41090899 | None:intergenic | 50.0% |
| !! | GGGAAATCCGTTGGTCTTGT+GGG | + | chr3_2:41090881-41090900 | None:intergenic | 50.0% |
| !! | TGGGAAATCCGTTGGTCTTG+TGG | + | chr3_2:41090882-41090901 | None:intergenic | 50.0% |
| CAATCCAAACACACCCTCAG+TGG | + | chr3_2:41093235-41093254 | None:intergenic | 50.0% | |
| GGAGCTTCTATGGTGCAGTC+CGG | + | chr3_2:41091678-41091697 | None:intergenic | 55.0% | |
| ! | TGTGGCCGTGGTTTGTACTC+TGG | + | chr3_2:41091948-41091967 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 41089552 | 41093258 | 41089552 | ID=Msa0405760;Name=Msa0405760 |
| chr3_2 | mRNA | 41089552 | 41093258 | 41089552 | ID=Msa0405760-mRNA-1;Parent=Msa0405760;Name=Msa0405760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|1|1|1|1|2|76|529 |
| chr3_2 | exon | 41089552 | 41090503 | 41089552 | ID=Msa0405760-mRNA-1:exon:8001;Parent=Msa0405760-mRNA-1 |
| chr3_2 | exon | 41092480 | 41093258 | 41092480 | ID=Msa0405760-mRNA-1:exon:8000;Parent=Msa0405760-mRNA-1 |
| chr3_2 | five_prime_UTR | 41093194 | 41093258 | 41093194 | ID=Msa0405760-mRNA-1:five_prime_utr;Parent=Msa0405760-mRNA-1 |
| chr3_2 | CDS | 41092480 | 41093193 | 41092480 | ID=Msa0405760-mRNA-1:cds;Parent=Msa0405760-mRNA-1 |
| chr3_2 | CDS | 41089628 | 41090503 | 41089628 | ID=Msa0405760-mRNA-1:cds;Parent=Msa0405760-mRNA-1 |
| chr3_2 | three_prime_UTR | 41089552 | 41089627 | 41089552 | ID=Msa0405760-mRNA-1:three_prime_utr;Parent=Msa0405760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
