Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415680 | P04078.1 | 100.000 | 356 | 0 | 0 | 1 | 356 | 1 | 356 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415680 | sp|P04078|GLNA1_MEDSA | 100.000 | 356 | 0 | 0 | 1 | 356 | 1 | 356 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415680 | G7J9B8 | 99.157 | 356 | 3 | 0 | 1 | 356 | 1 | 356 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415680 | Msa0603310 | 0.809510 | 1.826090e-50 | -8.615850e-47 |
| Msa0415680 | Msa0731580 | 0.808023 | 3.796954e-50 | -8.615850e-47 |
| Msa0415680 | Msa0754480 | 0.807979 | 3.878498e-50 | -8.615850e-47 |
| Msa0415680 | Msa0809920 | 0.822084 | 2.862187e-53 | -8.615850e-47 |
| Msa0415680 | Msa0829990 | 0.803141 | 4.017067e-49 | -8.615850e-47 |
| Msa0415680 | Msa0850480 | 0.805690 | 1.182070e-49 | -8.615850e-47 |
| Msa0415680 | Msa1077970 | 0.811812 | 5.804815e-51 | -8.615850e-47 |
| Msa0415680 | Msa1154570 | 0.801465 | 8.889249e-49 | -8.615850e-47 |
| Msa0415680 | Msa1390200 | 0.831692 | 1.444885e-55 | -8.615850e-47 |
| Msa0242720 | Msa0415680 | 0.816864 | 4.439636e-52 | -8.615850e-47 |
| Msa0324810 | Msa0415680 | 0.800457 | 1.428127e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415680 | MtrunA17_Chr3g0110261 | 99.157 | 356 | 3 | 0 | 1 | 356 | 1 | 356 | 0.0 | 728 |
| Msa0415680 | MtrunA17_Chr6g0479141 | 89.326 | 356 | 38 | 0 | 1 | 356 | 1 | 356 | 0.0 | 676 |
| Msa0415680 | MtrunA17_Chr5g0434471 | 87.042 | 355 | 46 | 0 | 2 | 356 | 3 | 357 | 0.0 | 657 |
| Msa0415680 | MtrunA17_Chr2g0287211 | 79.213 | 356 | 74 | 0 | 1 | 356 | 57 | 412 | 0.0 | 612 |
| Msa0415680 | MtrunA17_Chr2g0287181 | 75.562 | 356 | 87 | 0 | 1 | 356 | 57 | 412 | 0.0 | 590 |
| Msa0415680 | MtrunA17_Chr8g0364341 | 69.091 | 55 | 17 | 0 | 252 | 306 | 9 | 63 | 8.68e-20 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415680 | AT5G37600.1 | 89.326 | 356 | 38 | 0 | 1 | 356 | 1 | 356 | 0.0 | 679 |
| Msa0415680 | AT1G66200.1 | 88.764 | 356 | 40 | 0 | 1 | 356 | 1 | 356 | 0.0 | 677 |
| Msa0415680 | AT5G16570.1 | 90.169 | 356 | 35 | 0 | 1 | 356 | 1 | 356 | 0.0 | 676 |
| Msa0415680 | AT1G66200.3 | 86.575 | 365 | 40 | 1 | 1 | 356 | 1 | 365 | 0.0 | 669 |
| Msa0415680 | AT3G17820.1 | 85.552 | 353 | 51 | 0 | 1 | 353 | 1 | 353 | 0.0 | 644 |
| Msa0415680 | AT1G48470.1 | 81.065 | 338 | 64 | 0 | 16 | 353 | 16 | 353 | 0.0 | 598 |
| Msa0415680 | AT5G35630.3 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| Msa0415680 | AT5G35630.2 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| Msa0415680 | AT5G35630.1 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| Msa0415680 | AT1G66200.2 | 88.889 | 252 | 28 | 0 | 1 | 252 | 1 | 252 | 5.44e-174 | 484 |
| Msa0415680 | AT5G16570.2 | 89.540 | 239 | 25 | 0 | 1 | 239 | 1 | 239 | 8.90e-162 | 452 |
Find 135 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCAAACCTTAATTGGTTT+TGG | 0.177125 | 3_2:-62043549 | None:intergenic |
| CTTTGACCCAAAACCAATTA+AGG | 0.180257 | 3_2:+62043542 | Msa0415680:CDS |
| TGGAAATAGCAAACCTTAAT+TGG | 0.193278 | 3_2:-62043555 | None:intergenic |
| ATGGGTAGCTCGTTACATTT+TGG | 0.226756 | 3_2:+62043351 | Msa0415680:CDS |
| CTGACATTAACACCTTCTTA+TGG | 0.238098 | 3_2:+62043960 | Msa0415680:CDS |
| TCTAAATGGATCCTTGAAAA+TGG | 0.250502 | 3_2:-62042062 | None:intergenic |
| GTTGATTCCGCATTAGAATT+TGG | 0.259893 | 3_2:+62044370 | Msa0415680:three_prime_UTR |
| CCTTCTTCCTTCATGGTCAT+TGG | 0.262856 | 3_2:-62044588 | None:intergenic |
| ATTCCATCCTTCTTCCTTCA+TGG | 0.263232 | 3_2:-62044595 | None:intergenic |
| ATATTGTTACCCCTTCTAAA+TGG | 0.285580 | 3_2:-62042076 | None:intergenic |
| TTGGATTTGTGTTATTGTTA+TGG | 0.290371 | 3_2:+62044412 | Msa0415680:three_prime_UTR |
| CTGAAAGGAGAGACATGTTT+TGG | 0.292470 | 3_2:-62040878 | None:intergenic |
| ACTTTGTTTGTTTGAATTTG+AGG | 0.300071 | 3_2:+62044440 | Msa0415680:three_prime_UTR |
| TCAAATCGAATCGAATCTTT+AGG | 0.306816 | 3_2:+62040805 | Msa0415680:five_prime_UTR |
| TCTCTGCTGGTGATGAGATA+TGG | 0.307171 | 3_2:+62043332 | Msa0415680:CDS |
| ATGTCTCTTGTTGGTGGGAA+TGG | 0.309316 | 3_2:-62042543 | None:intergenic |
| TTCAAACTTAGTAAAATCTA+AGG | 0.315824 | 3_2:-62040842 | None:intergenic |
| TGAATTTGAGGCCTTGTTAT+AGG | 0.320408 | 3_2:+62044452 | Msa0415680:three_prime_UTR |
| AAGGAGCACATTGCTGCTTA+TGG | 0.324475 | 3_2:+62043896 | Msa0415680:CDS |
| TTATGCAAAACTAGGGTGAT+TGG | 0.355807 | 3_2:+62043682 | Msa0415680:intron |
| TGACATTAACACCTTCTTAT+GGG | 0.364511 | 3_2:+62043961 | Msa0415680:CDS |
| AGCTGTGAAGGGTCAGTAAC+TGG | 0.376973 | 3_2:-62041843 | None:intergenic |
| GGCAGCTGCATGTCTCTTGT+TGG | 0.378014 | 3_2:-62042552 | None:intergenic |
| CATGTGTGTGTGGTGGCTTA+TGG | 0.383641 | 3_2:-62044324 | None:intergenic |
| TATGTCAGGATTGGTGGATC+TGG | 0.389845 | 3_2:+62041671 | Msa0415680:intron |
| GTGGGAATGGGTTCTCCAGC+TGG | 0.392840 | 3_2:-62042530 | None:intergenic |
| AGAATCTAACCATATGTATT+CGG | 0.402832 | 3_2:-62040946 | None:intergenic |
| CAGGATTGGTGGATCTGGTT+TGG | 0.409454 | 3_2:+62041676 | Msa0415680:intron |
| TGAAAGCAATTGAGAAGCTT+GGG | 0.410163 | 3_2:+62043864 | Msa0415680:CDS |
| ATCATGGAAGTAACAACATA+TGG | 0.411129 | 3_2:-62044276 | None:intergenic |
| TCCAGGAGCTTGACCTGTGC+TGG | 0.411245 | 3_2:-62041889 | None:intergenic |
| TAGAAGGGGTAACAATATCT+TGG | 0.417590 | 3_2:+62042081 | Msa0415680:CDS |
| CTGGTGCTCACACAAATTAC+AGG | 0.417888 | 3_2:+62043712 | Msa0415680:CDS |
| AAAGACATCAATTGGCCTCT+TGG | 0.419531 | 3_2:+62042743 | Msa0415680:CDS |
| CCCTCAGTTGGTATCTCTGC+TGG | 0.420001 | 3_2:+62043319 | Msa0415680:CDS |
| TTGAAAGCAATTGAGAAGCT+TGG | 0.420009 | 3_2:+62043863 | Msa0415680:CDS |
| GGCAACGAGCGTAGATTGAC+AGG | 0.421220 | 3_2:+62043923 | Msa0415680:CDS |
| TGTTGCAGAAAGACATCAAT+TGG | 0.424542 | 3_2:+62042735 | Msa0415680:CDS |
| TGTCTCTTGTTGGTGGGAAT+GGG | 0.425962 | 3_2:-62042542 | None:intergenic |
| TAGAGGATCACTGAGGTTGC+TGG | 0.429246 | 3_2:+62043507 | Msa0415680:intron |
| GCTGGTGCTGACAAGGCATT+TGG | 0.430707 | 3_2:+62043066 | Msa0415680:CDS |
| ATCAGGATGGCTGAAAATCT+TGG | 0.445473 | 3_2:-62042573 | None:intergenic |
| CTCTGCTGGTGATGAGATAT+GGG | 0.446320 | 3_2:+62043333 | Msa0415680:CDS |
| CGGTGGTTTCGGAGAGGTCA+AGG | 0.456062 | 3_2:-62040911 | None:intergenic |
| GTTCATTATGTCAGGATTGG+TGG | 0.459850 | 3_2:+62041665 | Msa0415680:intron |
| GTGGATCTGGTTTGGACTTG+AGG | 0.460278 | 3_2:+62041684 | Msa0415680:CDS |
| GGCTTATGGTTTCCAGAGAA+TGG | 0.461165 | 3_2:-62044310 | None:intergenic |
| CCTCTTGGTTGGCCAGTTGG+TGG | 0.462411 | 3_2:+62042758 | Msa0415680:CDS |
| AAATCATCGCCGAATACATA+TGG | 0.465828 | 3_2:+62040937 | Msa0415680:CDS |
| AGCTGCATGTCTCTTGTTGG+TGG | 0.467488 | 3_2:-62042549 | None:intergenic |
| AATGGTGGTGTCTGCAATCA+TGG | 0.470051 | 3_2:-62044292 | None:intergenic |
| TCCAGCACAGGTCAAGCTCC+TGG | 0.473336 | 3_2:+62041888 | Msa0415680:CDS |
| TTGCAGACACCACCATTCTC+TGG | 0.481231 | 3_2:+62044298 | Msa0415680:CDS |
| TGGCCTCTTGGTTGGCCAGT+TGG | 0.482222 | 3_2:+62042755 | Msa0415680:CDS |
| AACTATGATGGTTCCAGCAC+AGG | 0.485647 | 3_2:+62041876 | Msa0415680:CDS |
| GGTACTTCAGCAACAACATC+AGG | 0.488296 | 3_2:-62042590 | None:intergenic |
| TTATTTGCTTACCCATAAGA+AGG | 0.490705 | 3_2:-62043972 | None:intergenic |
| TTCCACTTGGGAAGCTGTGA+AGG | 0.498232 | 3_2:-62041855 | None:intergenic |
| GATCCTTGAAAATGGCTTGT+GGG | 0.500897 | 3_2:-62042054 | None:intergenic |
| GAATCAAATGAGAACGAAAA+CGG | 0.505418 | 3_2:-62040776 | None:intergenic |
| ACATCAATTGGCCTCTTGGT+TGG | 0.505676 | 3_2:+62042747 | Msa0415680:CDS |
| GCACCAGCACCACAATAGTA+TGG | 0.514601 | 3_2:-62043051 | None:intergenic |
| GGAAGGGACACAGAGAAAGC+AGG | 0.514679 | 3_2:+62044210 | Msa0415680:CDS |
| ATCAACATCAGTGGAATCAA+TGG | 0.515689 | 3_2:+62043135 | Msa0415680:CDS |
| CTTCCCAAGTGGAACTATGA+TGG | 0.516245 | 3_2:+62041864 | Msa0415680:CDS |
| GGAAAGGTTATTTCGAGGAT+AGG | 0.519246 | 3_2:+62044232 | Msa0415680:CDS |
| CACATTGCTGCTTATGGAGA+AGG | 0.521068 | 3_2:+62043902 | Msa0415680:CDS |
| TACAAAGCCTGTCTTTATGC+CGG | 0.521155 | 3_2:+62043111 | Msa0415680:CDS |
| ACCAAGTCTATGAGAGAAGA+TGG | 0.523810 | 3_2:+62043824 | Msa0415680:CDS |
| TAGAGAAGGTGAGGAAGACT+AGG | 0.524386 | 3_2:+62040684 | Msa0415680:five_prime_UTR |
| TTTCAAGGATCCATTTAGAA+GGG | 0.527758 | 3_2:+62042066 | Msa0415680:CDS |
| GTTGATGCCGGCATAAAGAC+AGG | 0.529739 | 3_2:-62043118 | None:intergenic |
| GGACCATACTATTGTGGTGC+TGG | 0.534606 | 3_2:+62043048 | Msa0415680:CDS |
| ACAGAGAAATGAGGCAGTGT+GGG | 0.535734 | 3_2:-62040739 | None:intergenic |
| AAAAGATTATAGAGAAGGTG+AGG | 0.538212 | 3_2:+62040675 | Msa0415680:five_prime_UTR |
| TATGGATCCATGTTAGATGA+TGG | 0.538723 | 3_2:-62044258 | None:intergenic |
| GCTGCATGTCTCTTGTTGGT+GGG | 0.539293 | 3_2:-62042548 | None:intergenic |
| GGTCCAGGAAAACCACCAAC+TGG | 0.540153 | 3_2:-62042770 | None:intergenic |
| TGACCATGAAGGAAGAAGGA+TGG | 0.547255 | 3_2:+62044592 | Msa0415680:three_prime_UTR |
| CCAATGACCATGAAGGAAGA+AGG | 0.549697 | 3_2:+62044588 | Msa0415680:three_prime_UTR |
| TTCCAAGTTGGTCCCTCAGT+TGG | 0.551503 | 3_2:+62043307 | Msa0415680:CDS |
| CGTGGTGCGTCGATTAGAGT+TGG | 0.552602 | 3_2:+62044189 | Msa0415680:CDS |
| ATAACTTCACTATCTTCTCC+AGG | 0.553474 | 3_2:-62041906 | None:intergenic |
| GATCACTGAGGTTGCTGGTG+TGG | 0.554625 | 3_2:+62043512 | Msa0415680:CDS |
| GATTCCACTGATGTTGATGC+CGG | 0.555187 | 3_2:-62043130 | None:intergenic |
| AGCAGGGAAAGGTTATTTCG+AGG | 0.555891 | 3_2:+62044227 | Msa0415680:CDS |
| AAGGTTATTTCGAGGATAGG+AGG | 0.561130 | 3_2:+62044235 | Msa0415680:CDS |
| GGATCCTTGAAAATGGCTTG+TGG | 0.562735 | 3_2:-62042055 | None:intergenic |
| TGGACTTGAGGAGCAAAGCA+AGG | 0.567464 | 3_2:+62041696 | Msa0415680:CDS |
| TAAAATGCCAATGACCATGA+AGG | 0.568087 | 3_2:+62044581 | Msa0415680:three_prime_UTR |
| ACCATCTTCTCTCATAGACT+TGG | 0.571470 | 3_2:-62043825 | None:intergenic |
| GGAACCATCATAGTTCCACT+TGG | 0.572427 | 3_2:-62041868 | None:intergenic |
| ATTGATGTCTTTCTGCAACA+AGG | 0.574318 | 3_2:-62042732 | None:intergenic |
| TTGTGGTGCTGGTGCTGACA+AGG | 0.575827 | 3_2:+62043059 | Msa0415680:CDS |
| TTGCTCCAACTTACTTGACC+AGG | 0.576512 | 3_2:-62043168 | None:intergenic |
| TACCAACTGAGGGACCAACT+TGG | 0.582203 | 3_2:-62043309 | None:intergenic |
| GTGCGTCGATTAGAGTTGGA+AGG | 0.584013 | 3_2:+62044193 | Msa0415680:CDS |
| ATGTAGTGGGAATTCCAAGT+TGG | 0.586154 | 3_2:+62043295 | Msa0415680:intron |
| TAGGGTGATTGGAATGGTGC+TGG | 0.586935 | 3_2:+62043693 | Msa0415680:intron |
| TGTGATGCGTACACTCCAGC+TGG | 0.588646 | 3_2:+62042515 | Msa0415680:CDS |
| TTCAAGGATCCATTTAGAAG+GGG | 0.590326 | 3_2:+62042067 | Msa0415680:CDS |
| ATCAATGGTGAAGTGATGCC+TGG | 0.592881 | 3_2:+62043150 | Msa0415680:CDS |
| TCCACTTGGGAAGCTGTGAA+GGG | 0.596916 | 3_2:-62041854 | None:intergenic |
| GACACAGAGAAAGCAGGGAA+AGG | 0.598045 | 3_2:+62044216 | Msa0415680:CDS |
| GAAGGGTCAGTAACTGGACC+TGG | 0.599215 | 3_2:-62041837 | None:intergenic |
| CAATAGGGACCATACTATTG+TGG | 0.601480 | 3_2:+62043042 | Msa0415680:intron |
| ACCCTTCACAGCTTCCCAAG+TGG | 0.605168 | 3_2:+62041853 | Msa0415680:CDS |
| GGACTTGAGGAGCAAAGCAA+GGG | 0.609551 | 3_2:+62041697 | Msa0415680:CDS |
| CAACTCTAATCGACGCACCA+CGG | 0.611739 | 3_2:-62044188 | None:intergenic |
| TTCAATGCATGTGTGTGTGG+TGG | 0.619576 | 3_2:-62044331 | None:intergenic |
| TACTTCAATGCATGTGTGTG+TGG | 0.619637 | 3_2:-62044334 | None:intergenic |
| TAGGAGGCCATCATCTAACA+TGG | 0.627480 | 3_2:+62044251 | Msa0415680:CDS |
| CAAGGTTGATGAGATCTGAA+AGG | 0.633414 | 3_2:-62040893 | None:intergenic |
| GAAGGGACACAGAGAAAGCA+GGG | 0.638354 | 3_2:+62044211 | Msa0415680:CDS |
| CAAAACTAGGGTGATTGGAA+TGG | 0.644331 | 3_2:+62043687 | Msa0415680:intron |
| TGCGTCGATTAGAGTTGGAA+GGG | 0.644595 | 3_2:+62044194 | Msa0415680:CDS |
| GAACCATCATAGTTCCACTT+GGG | 0.652093 | 3_2:-62041867 | None:intergenic |
| AACAGAGAAATGAGGCAGTG+TGG | 0.654868 | 3_2:-62040740 | None:intergenic |
| GAAATATGAAACCTATAACA+AGG | 0.657961 | 3_2:-62044463 | None:intergenic |
| ACAATGACCAAATTCTAATG+CGG | 0.661789 | 3_2:-62044377 | None:intergenic |
| TTGAAGGGTGTTGCAAACCG+TGG | 0.663350 | 3_2:+62044171 | Msa0415680:intron |
| TTATGGTTTCCAGAGAATGG+TGG | 0.667248 | 3_2:-62044307 | None:intergenic |
| ACCAGCAGAGATACCAACTG+AGG | 0.670459 | 3_2:-62043320 | None:intergenic |
| CCACCAACTGGCCAACCAAG+AGG | 0.671238 | 3_2:-62042758 | None:intergenic |
| CAGAGAAATGAGGCAGTGTG+GGG | 0.672345 | 3_2:-62040738 | None:intergenic |
| TATGCCGGCATCAACATCAG+TGG | 0.676060 | 3_2:+62043126 | Msa0415680:CDS |
| CTTCAGCAACAACATCAGGA+TGG | 0.677550 | 3_2:-62042586 | None:intergenic |
| CCAGCAGAGATACCAACTGA+GGG | 0.678315 | 3_2:-62043319 | None:intergenic |
| AATGTGAGTCAACAATGTCA+CGG | 0.681181 | 3_2:-62043089 | None:intergenic |
| TTGTTGTGAACAGAGAAATG+AGG | 0.688616 | 3_2:-62040748 | None:intergenic |
| GCAACGAGCGTAGATTGACA+GGG | 0.702514 | 3_2:+62043924 | Msa0415680:CDS |
| ATGTTGTTGCTGAAGTACCA+TGG | 0.706598 | 3_2:+62042594 | Msa0415680:CDS |
| GAAGCTTGGGAAGAAGCACA+AGG | 0.711059 | 3_2:+62043877 | Msa0415680:CDS |
| AAGTCTATGAGAGAAGATGG+TGG | 0.739470 | 3_2:+62043827 | Msa0415680:CDS |
| GTTCCAATAGAGGATCACTG+AGG | 0.789699 | 3_2:+62043500 | Msa0415680:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAAAAAAAATAATCA+TGG | - | chr3_2:62041161-62041180 | None:intergenic | 10.0% |
| !! | ACAAAATATATACATAATTA+AGG | - | chr3_2:62041978-62041997 | None:intergenic | 10.0% |
| !!! | TATTATGATTTTTACTTATT+TGG | + | chr3_2:62042014-62042033 | Msa0415680:intron | 10.0% |
| !!! | ATTATGATTTTTACTTATTT+GGG | + | chr3_2:62042015-62042034 | Msa0415680:intron | 10.0% |
| !!! | AATCAACAATAATTATTTTA+CGG | - | chr3_2:62044535-62044554 | None:intergenic | 10.0% |
| !! | ATTATGTTTATTAAGAAAAA+TGG | + | chr3_2:62044552-62044571 | Msa0415680:three_prime_UTR | 10.0% |
| !!! | ATAGATTTTTAAGTTGATTT+TGG | + | chr3_2:62041294-62041313 | Msa0415680:intron | 15.0% |
| !!! | TAGATTTTTAAGTTGATTTT+GGG | + | chr3_2:62041295-62041314 | Msa0415680:intron | 15.0% |
| !!! | TTTTTTGTTTGGAATAAAAT+TGG | + | chr3_2:62041440-62041459 | Msa0415680:intron | 15.0% |
| !! | ATGAACATAAATTAATCAAA+GGG | - | chr3_2:62041651-62041670 | None:intergenic | 15.0% |
| !! | AATGAACATAAATTAATCAA+AGG | - | chr3_2:62041652-62041671 | None:intergenic | 15.0% |
| !!! | AAAATATAAATGGCTTTTTT+TGG | + | chr3_2:62041802-62041821 | Msa0415680:intron | 15.0% |
| !!! | AAATATAAATGGCTTTTTTT+GGG | + | chr3_2:62041803-62041822 | Msa0415680:intron | 15.0% |
| !!! | TTATGATTTTTACTTATTTG+GGG | + | chr3_2:62042016-62042035 | Msa0415680:intron | 15.0% |
| !!! | TAGTAATTTTGATACATTTA+AGG | - | chr3_2:62042180-62042199 | None:intergenic | 15.0% |
| !! | ATAACATAAAACTATTTGTT+AGG | - | chr3_2:62042923-62042942 | None:intergenic | 15.0% |
| !!! | TATTTTATAATTTGCTCAAT+AGG | + | chr3_2:62043026-62043045 | Msa0415680:intron | 15.0% |
| !!! | ATTTTATAATTTGCTCAATA+GGG | + | chr3_2:62043027-62043046 | Msa0415680:intron | 15.0% |
| !! | GTAGTAAATAATAATGATAA+AGG | - | chr3_2:62043212-62043231 | None:intergenic | 15.0% |
| !!! | TATTGTTTTTTTAATGTAGT+GGG | + | chr3_2:62043282-62043301 | Msa0415680:intron | 15.0% |
| !!! | TATTTTTTTTATGCAAAACT+AGG | + | chr3_2:62043674-62043693 | Msa0415680:intron | 15.0% |
| !!! | ATTTTTTTTATGCAAAACTA+GGG | + | chr3_2:62043675-62043694 | Msa0415680:intron | 15.0% |
| !!! | CTATAGTTGAATATTTTATA+TGG | + | chr3_2:62043765-62043784 | Msa0415680:intron | 15.0% |
| !!! | TTTTCTTTTTTTTCTTTTCT+TGG | - | chr3_2:62044014-62044033 | None:intergenic | 15.0% |
| !! | TTCAAACTTAGTAAAATCTA+AGG | - | chr3_2:62040845-62040864 | None:intergenic | 20.0% |
| !!! | AATGACTTTGTTTTTTTGTT+TGG | + | chr3_2:62041429-62041448 | Msa0415680:intron | 20.0% |
| !! | AAGAATTTAATATCATGGTT+TGG | - | chr3_2:62041584-62041603 | None:intergenic | 20.0% |
| !! | TGAACATAAATTAATCAAAG+GGG | - | chr3_2:62041650-62041669 | None:intergenic | 20.0% |
| !! | TAATTTATGTTCATTATGTC+AGG | + | chr3_2:62041657-62041676 | Msa0415680:intron | 20.0% |
| !!! | TATTTTGTTCTCTATTTTCT+TGG | + | chr3_2:62041990-62042009 | Msa0415680:intron | 20.0% |
| !! | GAGTTTAATTAAAAACAAGA+GGG | - | chr3_2:62042487-62042506 | None:intergenic | 20.0% |
| !! | TGAGTTTAATTAAAAACAAG+AGG | - | chr3_2:62042488-62042507 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTTAATTAAACTC+AGG | + | chr3_2:62042487-62042506 | Msa0415680:intron | 20.0% |
| !! | TACACAATCATATAAGAAAA+TGG | + | chr3_2:62042856-62042875 | Msa0415680:intron | 20.0% |
| !!! | TAAAACTATTTGTTAGGTAA+GGG | - | chr3_2:62042917-62042936 | None:intergenic | 20.0% |
| !!! | ATAAAACTATTTGTTAGGTA+AGG | - | chr3_2:62042918-62042937 | None:intergenic | 20.0% |
| !!! | CTATTGTTTTTTTAATGTAG+TGG | + | chr3_2:62043281-62043300 | Msa0415680:intron | 20.0% |
| !! | AACAAAGAAAATTAGTTAGT+TGG | - | chr3_2:62043477-62043496 | None:intergenic | 20.0% |
| !! | TATAGACAAGTATATCAATT+GGG | - | chr3_2:62043634-62043653 | None:intergenic | 20.0% |
| !! | ATATAGACAAGTATATCAAT+TGG | - | chr3_2:62043635-62043654 | None:intergenic | 20.0% |
| !!! | TTGAATATTTTATATGGTCA+TGG | + | chr3_2:62043771-62043790 | Msa0415680:intron | 20.0% |
| !!! | TTTTTTGTTGTTCTAATTGT+TGG | + | chr3_2:62044133-62044152 | Msa0415680:intron | 20.0% |
| ! | AGAATCTAACCATATGTATT+CGG | - | chr3_2:62040949-62040968 | None:intergenic | 25.0% |
| !!! | GATGTTTTGTTCTGTTTTTT+AGG | + | chr3_2:62041325-62041344 | Msa0415680:intron | 25.0% |
| ! | AGAACAGAAAAAATCATCAT+GGG | - | chr3_2:62041357-62041376 | None:intergenic | 25.0% |
| !!! | TTTAATATCATGGTTTGGTT+TGG | - | chr3_2:62041579-62041598 | None:intergenic | 25.0% |
| ! | CGTACAAGAATTTAATATCA+TGG | - | chr3_2:62041589-62041608 | None:intergenic | 25.0% |
| ! | GAACATAAATTAATCAAAGG+GGG | - | chr3_2:62041649-62041668 | None:intergenic | 25.0% |
| ! | TTGTCTCTTGTTAATTAGTT+TGG | + | chr3_2:62042245-62042264 | Msa0415680:intron | 25.0% |
| !! | TTGTTGTATGATTTGTGATT+AGG | + | chr3_2:62042687-62042706 | Msa0415680:intron | 25.0% |
| ! | TCTCATATTATTACCACTAA+TGG | - | chr3_2:62042887-62042906 | None:intergenic | 25.0% |
| !!! | GGTGAATTTTTTTTTGTCAT+TGG | + | chr3_2:62042981-62043000 | Msa0415680:intron | 25.0% |
| ! | AATAGGTCAAAATCAAAAAG+AGG | - | chr3_2:62043430-62043449 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGACCTATTGAA+TGG | + | chr3_2:62043433-62043452 | Msa0415680:intron | 25.0% |
| ! | GAATAACTTGATTCAAACAA+GGG | - | chr3_2:62043581-62043600 | None:intergenic | 25.0% |
| ! | AGAATAACTTGATTCAAACA+AGG | - | chr3_2:62043582-62043601 | None:intergenic | 25.0% |
| ! | AAGTATATCAATTGGGTTAA+AGG | - | chr3_2:62043627-62043646 | None:intergenic | 25.0% |
| ! | AAAAACAAATGTTACAGACT+AGG | - | chr3_2:62044113-62044132 | None:intergenic | 25.0% |
| !!! | ATTTGGTCATTGTTTTTTCT+AGG | + | chr3_2:62044387-62044406 | Msa0415680:three_prime_UTR | 25.0% |
| !!! | TCATTGTTTTTTCTAGGATT+TGG | + | chr3_2:62044393-62044412 | Msa0415680:three_prime_UTR | 25.0% |
| !! | TTGGATTTGTGTTATTGTTA+TGG | + | chr3_2:62044412-62044431 | Msa0415680:three_prime_UTR | 25.0% |
| !! | ACTTTGTTTGTTTGAATTTG+AGG | + | chr3_2:62044440-62044459 | Msa0415680:three_prime_UTR | 25.0% |
| ! | GAAATATGAAACCTATAACA+AGG | - | chr3_2:62044466-62044485 | None:intergenic | 25.0% |
| AAAAGATTATAGAGAAGGTG+AGG | + | chr3_2:62040675-62040694 | Msa0415680:five_prime_UTR | 30.0% | |
| GAATCAAATGAGAACGAAAA+CGG | - | chr3_2:62040779-62040798 | None:intergenic | 30.0% | |
| TCAAATCGAATCGAATCTTT+AGG | + | chr3_2:62040805-62040824 | Msa0415680:five_prime_UTR | 30.0% | |
| !!! | ACATGTTTTGGTTTTGGTTT+TGG | - | chr3_2:62040869-62040888 | None:intergenic | 30.0% |
| !! | TTTTGTTTGTTAGCATGTGA+GGG | - | chr3_2:62040982-62041001 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGTTAGCATGTG+AGG | - | chr3_2:62040983-62041002 | None:intergenic | 30.0% |
| ! | ATGATTCTAGAAAAACGTTG+CGG | - | chr3_2:62041123-62041142 | None:intergenic | 30.0% |
| AAGAGAGAGAAAATAATCAC+TGG | - | chr3_2:62041222-62041241 | None:intergenic | 30.0% | |
| !!! | TAAGTTGATTTTGGGATATG+AGG | + | chr3_2:62041303-62041322 | Msa0415680:intron | 30.0% |
| CAGAACAGAAAAAATCATCA+TGG | - | chr3_2:62041358-62041377 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTGATGGTTGAGTA+TGG | + | chr3_2:62041382-62041401 | Msa0415680:intron | 30.0% |
| TATGTTCATTATGTCAGGAT+TGG | + | chr3_2:62041662-62041681 | Msa0415680:intron | 30.0% | |
| !! | GATTTTTACTTATTTGGGGT+TGG | + | chr3_2:62042020-62042039 | Msa0415680:intron | 30.0% |
| TCTAAATGGATCCTTGAAAA+TGG | - | chr3_2:62042065-62042084 | None:intergenic | 30.0% | |
| !! | TTTTCAAGGATCCATTTAGA+AGG | + | chr3_2:62042065-62042084 | Msa0415680:CDS | 30.0% |
| TTTCAAGGATCCATTTAGAA+GGG | + | chr3_2:62042066-62042085 | Msa0415680:CDS | 30.0% | |
| ATATTGTTACCCCTTCTAAA+TGG | - | chr3_2:62042079-62042098 | None:intergenic | 30.0% | |
| ATACATTTAAGGACTAACGA+CGG | - | chr3_2:62042169-62042188 | None:intergenic | 30.0% | |
| CAGATGATTCAATATACAAC+AGG | - | chr3_2:62042403-62042422 | None:intergenic | 30.0% | |
| AGTAGCAAAAAAAGATACCA+TGG | - | chr3_2:62042614-62042633 | None:intergenic | 30.0% | |
| AGAATAAACAAGTGGCAAAA+AGG | - | chr3_2:62042653-62042672 | None:intergenic | 30.0% | |
| ATCAGAACAGAATAAACAAG+TGG | - | chr3_2:62042661-62042680 | None:intergenic | 30.0% | |
| ! | GTATGATTTGTGATTAGGTA+TGG | + | chr3_2:62042692-62042711 | Msa0415680:intron | 30.0% |
| AAAGGTTAAAATGAGTGCAT+AGG | - | chr3_2:62043194-62043213 | None:intergenic | 30.0% | |
| ! | TCAAAATCAAAAAGAGGTGT+TGG | - | chr3_2:62043424-62043443 | None:intergenic | 30.0% |
| AACACTAACTTCCATTCAAT+AGG | - | chr3_2:62043447-62043466 | None:intergenic | 30.0% | |
| GAAAATTAGTTAGTTGGAGA+AGG | - | chr3_2:62043471-62043490 | None:intergenic | 30.0% | |
| ! | CTTTGTTTATGTTCCAATAG+AGG | + | chr3_2:62043490-62043509 | Msa0415680:intron | 30.0% |
| !!! | AGCAAACCTTAATTGGTTTT+GGG | - | chr3_2:62043551-62043570 | None:intergenic | 30.0% |
| !! | TAGCAAACCTTAATTGGTTT+TGG | - | chr3_2:62043552-62043571 | None:intergenic | 30.0% |
| TGGAAATAGCAAACCTTAAT+TGG | - | chr3_2:62043558-62043577 | None:intergenic | 30.0% | |
| TGACATTAACACCTTCTTAT+GGG | + | chr3_2:62043961-62043980 | Msa0415680:CDS | 30.0% | |
| TTATTTGCTTACCCATAAGA+AGG | - | chr3_2:62043975-62043994 | None:intergenic | 30.0% | |
| ATACGTAGTAGACTTGAAAT+CGG | - | chr3_2:62044061-62044080 | None:intergenic | 30.0% | |
| ! | ATTTCAAGTCTACTACGTAT+GGG | + | chr3_2:62044061-62044080 | Msa0415680:intron | 30.0% |
| ATCATGGAAGTAACAACATA+TGG | - | chr3_2:62044279-62044298 | None:intergenic | 30.0% | |
| ACAATGACCAAATTCTAATG+CGG | - | chr3_2:62044380-62044399 | None:intergenic | 30.0% | |
| TAGGAACAGAAAAAGCAACT+AGG | + | chr3_2:62040703-62040722 | Msa0415680:five_prime_UTR | 35.0% | |
| TTGTTGTGAACAGAGAAATG+AGG | - | chr3_2:62040751-62040770 | None:intergenic | 35.0% | |
| AAATCATCGCCGAATACATA+TGG | + | chr3_2:62040937-62040956 | Msa0415680:CDS | 35.0% | |
| ! | AGTAGTGTTTTTCGTACGTA+CGG | - | chr3_2:62041055-62041074 | None:intergenic | 35.0% |
| !!! | GTTCTGACTCTGTTTTTTGA+TGG | + | chr3_2:62041372-62041391 | Msa0415680:intron | 35.0% |
| TATTGTACTTAGTGGTAGAC+TGG | - | chr3_2:62041546-62041565 | None:intergenic | 35.0% | |
| !! | TGGTTTGGTATTGTACTTAG+TGG | - | chr3_2:62041554-62041573 | None:intergenic | 35.0% |
| !! | TATCATGGTTTGGTTTGGTT+TGG | - | chr3_2:62041574-62041593 | None:intergenic | 35.0% |
| ATAACTTCACTATCTTCTCC+AGG | - | chr3_2:62041909-62041928 | None:intergenic | 35.0% | |
| TTCAAGGATCCATTTAGAAG+GGG | + | chr3_2:62042067-62042086 | Msa0415680:CDS | 35.0% | |
| TAGAAGGGGTAACAATATCT+TGG | + | chr3_2:62042081-62042100 | Msa0415680:CDS | 35.0% | |
| GTGTGTCTTGGAAAACATAT+TGG | - | chr3_2:62042275-62042294 | None:intergenic | 35.0% | |
| ATTGATGTCTTTCTGCAACA+AGG | - | chr3_2:62042735-62042754 | None:intergenic | 35.0% | |
| TGTTGCAGAAAGACATCAAT+TGG | + | chr3_2:62042735-62042754 | Msa0415680:CDS | 35.0% | |
| CCAAAAGACAAGTTCAAACT+TGG | - | chr3_2:62042963-62042982 | None:intergenic | 35.0% | |
| ! | CCAAGTTTGAACTTGTCTTT+TGG | + | chr3_2:62042960-62042979 | Msa0415680:intron | 35.0% |
| AATGTGAGTCAACAATGTCA+CGG | - | chr3_2:62043092-62043111 | None:intergenic | 35.0% | |
| ATCAACATCAGTGGAATCAA+TGG | + | chr3_2:62043135-62043154 | Msa0415680:CDS | 35.0% | |
| !!! | CTTAATTGGTTTTGGGTCAA+AGG | - | chr3_2:62043544-62043563 | None:intergenic | 35.0% |
| CTTTGACCCAAAACCAATTA+AGG | + | chr3_2:62043542-62043561 | Msa0415680:CDS | 35.0% | |
| TAACTTGATTCAAACAAGGG+TGG | - | chr3_2:62043578-62043597 | None:intergenic | 35.0% | |
| ATCAATTGGGTTAAAGGAGT+TGG | - | chr3_2:62043621-62043640 | None:intergenic | 35.0% | |
| TTATGCAAAACTAGGGTGAT+TGG | + | chr3_2:62043682-62043701 | Msa0415680:intron | 35.0% | |
| !! | CTTGGTGCTACAGTATTATA+AGG | - | chr3_2:62043810-62043829 | None:intergenic | 35.0% |
| TTGAAAGCAATTGAGAAGCT+TGG | + | chr3_2:62043863-62043882 | Msa0415680:CDS | 35.0% | |
| TGAAAGCAATTGAGAAGCTT+GGG | + | chr3_2:62043864-62043883 | Msa0415680:CDS | 35.0% | |
| CTGACATTAACACCTTCTTA+TGG | + | chr3_2:62043960-62043979 | Msa0415680:CDS | 35.0% | |
| ! | GATTTCAAGTCTACTACGTA+TGG | + | chr3_2:62044060-62044079 | Msa0415680:intron | 35.0% |
| ! | TTTCAAGTCTACTACGTATG+GGG | + | chr3_2:62044062-62044081 | Msa0415680:intron | 35.0% |
| TATGGATCCATGTTAGATGA+TGG | - | chr3_2:62044261-62044280 | None:intergenic | 35.0% | |
| ! | GTTGATTCCGCATTAGAATT+TGG | + | chr3_2:62044370-62044389 | Msa0415680:three_prime_UTR | 35.0% |
| !! | TGAATTTGAGGCCTTGTTAT+AGG | + | chr3_2:62044452-62044471 | Msa0415680:three_prime_UTR | 35.0% |
| TAAAATGCCAATGACCATGA+AGG | + | chr3_2:62044581-62044600 | Msa0415680:three_prime_UTR | 35.0% | |
| !!! | GGAGAGACATGTTTTGGTTT+TGG | - | chr3_2:62040875-62040894 | None:intergenic | 40.0% |
| ! | CTGAAAGGAGAGACATGTTT+TGG | - | chr3_2:62040881-62040900 | None:intergenic | 40.0% |
| !! | CAAGGTTGATGAGATCTGAA+AGG | - | chr3_2:62040896-62040915 | None:intergenic | 40.0% |
| ! | GATGATTTTCTCGGTGGTTT+CGG | - | chr3_2:62040925-62040944 | None:intergenic | 40.0% |
| ! | GTATTCGGCGATGATTTTCT+CGG | - | chr3_2:62040934-62040953 | None:intergenic | 40.0% |
| ! | ATTCTAGAAAAACGTTGCGG+TGG | - | chr3_2:62041120-62041139 | None:intergenic | 40.0% |
| !! | TGGTTTGGTTTGGTTTGGTT+TGG | - | chr3_2:62041569-62041588 | None:intergenic | 40.0% |
| GTTCATTATGTCAGGATTGG+TGG | + | chr3_2:62041665-62041684 | Msa0415680:intron | 40.0% | |
| GAACCATCATAGTTCCACTT+GGG | - | chr3_2:62041870-62041889 | None:intergenic | 40.0% | |
| ! | GATCCTTGAAAATGGCTTGT+GGG | - | chr3_2:62042057-62042076 | None:intergenic | 40.0% |
| AAACATCATCGAGTGTGTCT+TGG | - | chr3_2:62042287-62042306 | None:intergenic | 40.0% | |
| TTCTGATCCCTAAATGTGTG+AGG | - | chr3_2:62042347-62042366 | None:intergenic | 40.0% | |
| ATCAGGATGGCTGAAAATCT+TGG | - | chr3_2:62042576-62042595 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGCTGAAGTACCA+TGG | + | chr3_2:62042594-62042613 | Msa0415680:CDS | 40.0% |
| ! | AAAGACATCAATTGGCCTCT+TGG | + | chr3_2:62042743-62042762 | Msa0415680:CDS | 40.0% |
| ! | TGAAAGTGAGTTTTCACCTG+AGG | - | chr3_2:62042794-62042813 | None:intergenic | 40.0% |
| GAAAATGGTGTGACCATTAG+TGG | + | chr3_2:62042871-62042890 | Msa0415680:intron | 40.0% | |
| CAATAGGGACCATACTATTG+TGG | + | chr3_2:62043042-62043061 | Msa0415680:intron | 40.0% | |
| TACAAAGCCTGTCTTTATGC+CGG | + | chr3_2:62043111-62043130 | Msa0415680:CDS | 40.0% | |
| ! | ATGTAGTGGGAATTCCAAGT+TGG | + | chr3_2:62043295-62043314 | Msa0415680:intron | 40.0% |
| ! | ATGGGTAGCTCGTTACATTT+TGG | + | chr3_2:62043351-62043370 | Msa0415680:CDS | 40.0% |
| CAAAACTAGGGTGATTGGAA+TGG | + | chr3_2:62043687-62043706 | Msa0415680:intron | 40.0% | |
| ACCAAGTCTATGAGAGAAGA+TGG | + | chr3_2:62043824-62043843 | Msa0415680:CDS | 40.0% | |
| ACCATCTTCTCTCATAGACT+TGG | - | chr3_2:62043828-62043847 | None:intergenic | 40.0% | |
| AAGTCTATGAGAGAAGATGG+TGG | + | chr3_2:62043827-62043846 | Msa0415680:CDS | 40.0% | |
| TTCAAGTCTACTACGTATGG+GGG | + | chr3_2:62044063-62044082 | Msa0415680:intron | 40.0% | |
| TGTTGTTCTAATTGTTGGCG+TGG | + | chr3_2:62044138-62044157 | Msa0415680:intron | 40.0% | |
| !! | CGTGGCTTGTGTTATTTGAA+GGG | + | chr3_2:62044156-62044175 | Msa0415680:intron | 40.0% |
| ! | GGAAAGGTTATTTCGAGGAT+AGG | + | chr3_2:62044232-62044251 | Msa0415680:CDS | 40.0% |
| ! | AAGGTTATTTCGAGGATAGG+AGG | + | chr3_2:62044235-62044254 | Msa0415680:CDS | 40.0% |
| TTATGGTTTCCAGAGAATGG+TGG | - | chr3_2:62044310-62044329 | None:intergenic | 40.0% | |
| TACTTCAATGCATGTGTGTG+TGG | - | chr3_2:62044337-62044356 | None:intergenic | 40.0% | |
| ATTCCATCCTTCTTCCTTCA+TGG | - | chr3_2:62044598-62044617 | None:intergenic | 40.0% | |
| TAGAGAAGGTGAGGAAGACT+AGG | + | chr3_2:62040684-62040703 | Msa0415680:five_prime_UTR | 45.0% | |
| ACAGAGAAATGAGGCAGTGT+GGG | - | chr3_2:62040742-62040761 | None:intergenic | 45.0% | |
| AACAGAGAAATGAGGCAGTG+TGG | - | chr3_2:62040743-62040762 | None:intergenic | 45.0% | |
| AGTGGTAGACTGGTAGGTTT+GGG | - | chr3_2:62041536-62041555 | None:intergenic | 45.0% | |
| TAGTGGTAGACTGGTAGGTT+TGG | - | chr3_2:62041537-62041556 | None:intergenic | 45.0% | |
| GTACTTAGTGGTAGACTGGT+AGG | - | chr3_2:62041542-62041561 | None:intergenic | 45.0% | |
| ! | TATGTCAGGATTGGTGGATC+TGG | + | chr3_2:62041671-62041690 | Msa0415680:intron | 45.0% |
| CTTCCCAAGTGGAACTATGA+TGG | + | chr3_2:62041864-62041883 | Msa0415680:CDS | 45.0% | |
| GGAACCATCATAGTTCCACT+TGG | - | chr3_2:62041871-62041890 | None:intergenic | 45.0% | |
| AACTATGATGGTTCCAGCAC+AGG | + | chr3_2:62041876-62041895 | Msa0415680:CDS | 45.0% | |
| GGATCCTTGAAAATGGCTTG+TGG | - | chr3_2:62042058-62042077 | None:intergenic | 45.0% | |
| ATGTGTGAGGCGTGTCAATA+TGG | - | chr3_2:62042334-62042353 | None:intergenic | 45.0% | |
| TTGACACGCCTCACACATTT+AGG | + | chr3_2:62042336-62042355 | Msa0415680:intron | 45.0% | |
| TGACACGCCTCACACATTTA+GGG | + | chr3_2:62042337-62042356 | Msa0415680:intron | 45.0% | |
| ! | TGTCTCTTGTTGGTGGGAAT+GGG | - | chr3_2:62042545-62042564 | None:intergenic | 45.0% |
| ! | ATGTCTCTTGTTGGTGGGAA+TGG | - | chr3_2:62042546-62042565 | None:intergenic | 45.0% |
| CTTCAGCAACAACATCAGGA+TGG | - | chr3_2:62042589-62042608 | None:intergenic | 45.0% | |
| GGTACTTCAGCAACAACATC+AGG | - | chr3_2:62042593-62042612 | None:intergenic | 45.0% | |
| ! | ACATCAATTGGCCTCTTGGT+TGG | + | chr3_2:62042747-62042766 | Msa0415680:CDS | 45.0% |
| GATTCCACTGATGTTGATGC+CGG | - | chr3_2:62043133-62043152 | None:intergenic | 45.0% | |
| ATCAATGGTGAAGTGATGCC+TGG | + | chr3_2:62043150-62043169 | Msa0415680:CDS | 45.0% | |
| TGATGCCTGGTCAAGTAAGT+TGG | + | chr3_2:62043163-62043182 | Msa0415680:intron | 45.0% | |
| TTGCTCCAACTTACTTGACC+AGG | - | chr3_2:62043171-62043190 | None:intergenic | 45.0% | |
| ! | TCTCTGCTGGTGATGAGATA+TGG | + | chr3_2:62043332-62043351 | Msa0415680:CDS | 45.0% |
| ! | CTCTGCTGGTGATGAGATAT+GGG | + | chr3_2:62043333-62043352 | Msa0415680:CDS | 45.0% |
| ! | GGTAGCTCGTTACATTTTGG+AGG | + | chr3_2:62043354-62043373 | Msa0415680:CDS | 45.0% |
| !! | GCTCGTTACATTTTGGAGGT+AGG | + | chr3_2:62043358-62043377 | Msa0415680:intron | 45.0% |
| !! | CGTTACATTTTGGAGGTAGG+TGG | + | chr3_2:62043361-62043380 | Msa0415680:intron | 45.0% |
| GTTCCAATAGAGGATCACTG+AGG | + | chr3_2:62043500-62043519 | Msa0415680:intron | 45.0% | |
| CAACCTCAGTGATCCTCTAT+TGG | - | chr3_2:62043506-62043525 | None:intergenic | 45.0% | |
| CTGGTGCTCACACAAATTAC+AGG | + | chr3_2:62043712-62043731 | Msa0415680:CDS | 45.0% | |
| ! | AAGGAGCACATTGCTGCTTA+TGG | + | chr3_2:62043896-62043915 | Msa0415680:CDS | 45.0% |
| ! | CACATTGCTGCTTATGGAGA+AGG | + | chr3_2:62043902-62043921 | Msa0415680:CDS | 45.0% |
| TCAAGTCTACTACGTATGGG+GGG | + | chr3_2:62044064-62044083 | Msa0415680:intron | 45.0% | |
| !! | GCGTGGCTTGTGTTATTTGA+AGG | + | chr3_2:62044155-62044174 | Msa0415680:intron | 45.0% |
| !! | TGCGTCGATTAGAGTTGGAA+GGG | + | chr3_2:62044194-62044213 | Msa0415680:CDS | 45.0% |
| ! | AGCAGGGAAAGGTTATTTCG+AGG | + | chr3_2:62044227-62044246 | Msa0415680:CDS | 45.0% |
| TAGGAGGCCATCATCTAACA+TGG | + | chr3_2:62044251-62044270 | Msa0415680:CDS | 45.0% | |
| ! | AATGGTGGTGTCTGCAATCA+TGG | - | chr3_2:62044295-62044314 | None:intergenic | 45.0% |
| GGCTTATGGTTTCCAGAGAA+TGG | - | chr3_2:62044313-62044332 | None:intergenic | 45.0% | |
| TTCAATGCATGTGTGTGTGG+TGG | - | chr3_2:62044334-62044353 | None:intergenic | 45.0% | |
| CCTTCTTCCTTCATGGTCAT+TGG | - | chr3_2:62044591-62044610 | None:intergenic | 45.0% | |
| CCAATGACCATGAAGGAAGA+AGG | + | chr3_2:62044588-62044607 | Msa0415680:three_prime_UTR | 45.0% | |
| TGACCATGAAGGAAGAAGGA+TGG | + | chr3_2:62044592-62044611 | Msa0415680:three_prime_UTR | 45.0% | |
| !! | TAATTTATTGAAAATATAAA+TGG | + | chr3_2:62041792-62041811 | Msa0415680:intron | 5.0% |
| CAGAGAAATGAGGCAGTGTG+GGG | - | chr3_2:62040741-62040760 | None:intergenic | 50.0% | |
| ! | TTTTCTCGGTGGTTTCGGAG+AGG | - | chr3_2:62040920-62040939 | None:intergenic | 50.0% |
| ! | TTCGGCGATGATTTTCTCGG+TGG | - | chr3_2:62040931-62040950 | None:intergenic | 50.0% |
| ! | CAGGATTGGTGGATCTGGTT+TGG | + | chr3_2:62041676-62041695 | Msa0415680:intron | 50.0% |
| !! | GTGGATCTGGTTTGGACTTG+AGG | + | chr3_2:62041684-62041703 | Msa0415680:CDS | 50.0% |
| TGGACTTGAGGAGCAAAGCA+AGG | + | chr3_2:62041696-62041715 | Msa0415680:CDS | 50.0% | |
| GGACTTGAGGAGCAAAGCAA+GGG | + | chr3_2:62041697-62041716 | Msa0415680:CDS | 50.0% | |
| !! | TTTTGGGTGCAGACTCTACC+AGG | + | chr3_2:62041819-62041838 | Msa0415680:intron | 50.0% |
| AGCTGTGAAGGGTCAGTAAC+TGG | - | chr3_2:62041846-62041865 | None:intergenic | 50.0% | |
| TCCACTTGGGAAGCTGTGAA+GGG | - | chr3_2:62041857-62041876 | None:intergenic | 50.0% | |
| TTCCACTTGGGAAGCTGTGA+AGG | - | chr3_2:62041858-62041877 | None:intergenic | 50.0% | |
| !! | CAGCCCACAAGCCATTTTCA+AGG | + | chr3_2:62042051-62042070 | Msa0415680:intron | 50.0% |
| GCTGCATGTCTCTTGTTGGT+GGG | - | chr3_2:62042551-62042570 | None:intergenic | 50.0% | |
| AGCTGCATGTCTCTTGTTGG+TGG | - | chr3_2:62042552-62042571 | None:intergenic | 50.0% | |
| ! | TGAGTTTTCACCTGAGGTCC+AGG | - | chr3_2:62042788-62042807 | None:intergenic | 50.0% |
| GGACCATACTATTGTGGTGC+TGG | + | chr3_2:62043048-62043067 | Msa0415680:CDS | 50.0% | |
| GCACCAGCACCACAATAGTA+TGG | - | chr3_2:62043054-62043073 | None:intergenic | 50.0% | |
| GTTGATGCCGGCATAAAGAC+AGG | - | chr3_2:62043121-62043140 | None:intergenic | 50.0% | |
| TATGCCGGCATCAACATCAG+TGG | + | chr3_2:62043126-62043145 | Msa0415680:CDS | 50.0% | |
| !! | TTCCAAGTTGGTCCCTCAGT+TGG | + | chr3_2:62043307-62043326 | Msa0415680:CDS | 50.0% |
| TACCAACTGAGGGACCAACT+TGG | - | chr3_2:62043312-62043331 | None:intergenic | 50.0% | |
| CCAGCAGAGATACCAACTGA+GGG | - | chr3_2:62043322-62043341 | None:intergenic | 50.0% | |
| ACCAGCAGAGATACCAACTG+AGG | - | chr3_2:62043323-62043342 | None:intergenic | 50.0% | |
| TAGAGGATCACTGAGGTTGC+TGG | + | chr3_2:62043507-62043526 | Msa0415680:intron | 50.0% | |
| TAGGGTGATTGGAATGGTGC+TGG | + | chr3_2:62043693-62043712 | Msa0415680:intron | 50.0% | |
| ! | GAAGCTTGGGAAGAAGCACA+AGG | + | chr3_2:62043877-62043896 | Msa0415680:CDS | 50.0% |
| GCAACGAGCGTAGATTGACA+GGG | + | chr3_2:62043924-62043943 | Msa0415680:CDS | 50.0% | |
| CAAGTCTACTACGTATGGGG+GGG | + | chr3_2:62044065-62044084 | Msa0415680:intron | 50.0% | |
| !! | TTGAAGGGTGTTGCAAACCG+TGG | + | chr3_2:62044171-62044190 | Msa0415680:intron | 50.0% |
| CAACTCTAATCGACGCACCA+CGG | - | chr3_2:62044191-62044210 | None:intergenic | 50.0% | |
| !! | GTGCGTCGATTAGAGTTGGA+AGG | + | chr3_2:62044193-62044212 | Msa0415680:CDS | 50.0% |
| GAAGGGACACAGAGAAAGCA+GGG | + | chr3_2:62044211-62044230 | Msa0415680:CDS | 50.0% | |
| GACACAGAGAAAGCAGGGAA+AGG | + | chr3_2:62044216-62044235 | Msa0415680:CDS | 50.0% | |
| TTGCAGACACCACCATTCTC+TGG | + | chr3_2:62044298-62044317 | Msa0415680:CDS | 50.0% | |
| CATGTGTGTGTGGTGGCTTA+TGG | - | chr3_2:62044327-62044346 | None:intergenic | 50.0% | |
| GAAGGGTCAGTAACTGGACC+TGG | - | chr3_2:62041840-62041859 | None:intergenic | 55.0% | |
| ACCCTTCACAGCTTCCCAAG+TGG | + | chr3_2:62041853-62041872 | Msa0415680:CDS | 55.0% | |
| TGTGATGCGTACACTCCAGC+TGG | + | chr3_2:62042515-62042534 | Msa0415680:CDS | 55.0% | |
| GGCAGCTGCATGTCTCTTGT+TGG | - | chr3_2:62042555-62042574 | None:intergenic | 55.0% | |
| !!! | TGGCCAGTTGGTGGTTTTCC+TGG | + | chr3_2:62042767-62042786 | Msa0415680:CDS | 55.0% |
| GGTCCAGGAAAACCACCAAC+TGG | - | chr3_2:62042773-62042792 | None:intergenic | 55.0% | |
| ! | TGGTGGTTTTCCTGGACCTC+AGG | + | chr3_2:62042775-62042794 | Msa0415680:CDS | 55.0% |
| !! | TTGTGGTGCTGGTGCTGACA+AGG | + | chr3_2:62043059-62043078 | Msa0415680:CDS | 55.0% |
| !! | GCTGGTGCTGACAAGGCATT+TGG | + | chr3_2:62043066-62043085 | Msa0415680:CDS | 55.0% |
| ! | CCCTCAGTTGGTATCTCTGC+TGG | + | chr3_2:62043319-62043338 | Msa0415680:CDS | 55.0% |
| GATCACTGAGGTTGCTGGTG+TGG | + | chr3_2:62043512-62043531 | Msa0415680:CDS | 55.0% | |
| GGCAACGAGCGTAGATTGAC+AGG | + | chr3_2:62043923-62043942 | Msa0415680:CDS | 55.0% | |
| ! | ACGTATGGGGGGGATTAGTG+CGG | + | chr3_2:62044075-62044094 | Msa0415680:intron | 55.0% |
| !! | CGTGGTGCGTCGATTAGAGT+TGG | + | chr3_2:62044189-62044208 | Msa0415680:CDS | 55.0% |
| GGAAGGGACACAGAGAAAGC+AGG | + | chr3_2:62044210-62044229 | Msa0415680:CDS | 55.0% | |
| CGGTGGTTTCGGAGAGGTCA+AGG | - | chr3_2:62040914-62040933 | None:intergenic | 60.0% | |
| TCCAGCACAGGTCAAGCTCC+TGG | + | chr3_2:62041888-62041907 | Msa0415680:CDS | 60.0% | |
| TCCAGGAGCTTGACCTGTGC+TGG | - | chr3_2:62041892-62041911 | None:intergenic | 60.0% | |
| ! | GTGGGAATGGGTTCTCCAGC+TGG | - | chr3_2:62042533-62042552 | None:intergenic | 60.0% |
| ! | TGGCCTCTTGGTTGGCCAGT+TGG | + | chr3_2:62042755-62042774 | Msa0415680:CDS | 60.0% |
| CCACCAACTGGCCAACCAAG+AGG | - | chr3_2:62042761-62042780 | None:intergenic | 60.0% | |
| ! | CCTCTTGGTTGGCCAGTTGG+TGG | + | chr3_2:62042758-62042777 | Msa0415680:CDS | 60.0% |
| ! | ATGGGGGGGATTAGTGCGGT+TGG | + | chr3_2:62044079-62044098 | Msa0415680:intron | 60.0% |
| ! | TGGGGGGGATTAGTGCGGTT+GGG | + | chr3_2:62044080-62044099 | Msa0415680:intron | 60.0% |
| ! | GGGGGGGATTAGTGCGGTTG+GGG | + | chr3_2:62044081-62044100 | Msa0415680:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 62040674 | 62044618 | 62040674 | ID=Msa0415680;Name=Msa0415680 |
| chr3_2 | mRNA | 62040674 | 62044618 | 62040674 | ID=Msa0415680-mRNA-1;Parent=Msa0415680;Name=Msa0415680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=211|1|1|1|1|1|12|289|356 |
| chr3_2 | exon | 62040674 | 62040958 | 62040674 | ID=Msa0415680-mRNA-1:exon:13222;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62041679 | 62041718 | 62041679 | ID=Msa0415680-mRNA-1:exon:13223;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62041831 | 62041934 | 62041831 | ID=Msa0415680-mRNA-1:exon:13224;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62042054 | 62042102 | 62042054 | ID=Msa0415680-mRNA-1:exon:13225;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62042509 | 62042615 | 62042509 | ID=Msa0415680-mRNA-1:exon:13226;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62042709 | 62042796 | 62042709 | ID=Msa0415680-mRNA-1:exon:13227;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62043048 | 62043176 | 62043048 | ID=Msa0415680-mRNA-1:exon:13228;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62043301 | 62043375 | 62043301 | ID=Msa0415680-mRNA-1:exon:13229;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62043510 | 62043563 | 62043510 | ID=Msa0415680-mRNA-1:exon:13230;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62043696 | 62043733 | 62043696 | ID=Msa0415680-mRNA-1:exon:13231;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62043823 | 62043982 | 62043823 | ID=Msa0415680-mRNA-1:exon:13232;Parent=Msa0415680-mRNA-1 |
| chr3_2 | exon | 62044177 | 62044618 | 62044177 | ID=Msa0415680-mRNA-1:exon:13233;Parent=Msa0415680-mRNA-1 |
| chr3_2 | five_prime_UTR | 62040674 | 62040884 | 62040674 | ID=Msa0415680-mRNA-1:five_prime_utr;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62040885 | 62040958 | 62040885 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62041679 | 62041718 | 62041679 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62041831 | 62041934 | 62041831 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62042054 | 62042102 | 62042054 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62042509 | 62042615 | 62042509 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62042709 | 62042796 | 62042709 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62043048 | 62043176 | 62043048 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62043301 | 62043375 | 62043301 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62043510 | 62043563 | 62043510 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62043696 | 62043733 | 62043696 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62043823 | 62043982 | 62043823 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | CDS | 62044177 | 62044329 | 62044177 | ID=Msa0415680-mRNA-1:cds;Parent=Msa0415680-mRNA-1 |
| chr3_2 | three_prime_UTR | 62044330 | 62044618 | 62044330 | ID=Msa0415680-mRNA-1:three_prime_utr;Parent=Msa0415680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
