AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0324810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324810 MtrunA17_Chr2g0302161 93.168 161 5 1 1 161 1 155 8.93e-109 306
Msa0324810 MtrunA17_Chr2g0302101 75.776 161 39 0 1 161 1 161 7.69e-92 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324810 AT1G48320.1 63.462 156 55 1 6 161 3 156 2.48e-69 207
Msa0324810 AT5G48950.1 54.667 150 65 2 11 157 3 152 1.42e-57 177
Msa0324810 AT5G48950.2 60.185 108 41 1 11 116 3 110 4.88e-43 139

Find 25 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGTCCTCCATGATAATT+TGG 0.156085 2_4:-30681175 None:intergenic
GATTTACCCCTTCATACATT+TGG 0.265244 2_4:+30681233 Msa0324810:CDS
AGCATTCACCTGAATGGTTT+TGG 0.290561 2_4:-30681955 None:intergenic
GTGTCATCAAACAAAGTTTC+TGG 0.297801 2_4:+30681272 Msa0324810:CDS
AAAACCAAAAGCTGCTGATT+TGG 0.309085 2_4:+30681211 Msa0324810:CDS
CCTCCATGAAGCACACTAAA+AGG 0.309265 2_4:-30681777 None:intergenic
AAGTGTTGCCAAAACCATTC+AGG 0.313827 2_4:+30681947 Msa0324810:CDS
AAATCCAAATCAGCAGCTTT+TGG 0.333199 2_4:-30681215 None:intergenic
ATTTACCCCTTCATACATTT+GGG 0.334094 2_4:+30681234 Msa0324810:CDS
TGCATACTTCTTTAGCATAT+TGG 0.339467 2_4:-30682601 None:intergenic
ATGGTCCTCCATGATAATTT+GGG 0.365696 2_4:-30681174 None:intergenic
TGTGGGTATAAAAGAGTTGC+TGG 0.445165 2_4:+30681852 Msa0324810:CDS
AAGAGGAGCATTCACCTGAA+TGG 0.482948 2_4:-30681961 None:intergenic
GCTGAAGCTCTTGCAAGTAT+TGG 0.487992 2_4:+30681816 Msa0324810:CDS
ATAGAATCCCCAAATTATCA+TGG 0.493931 2_4:+30681166 None:intergenic
AGGTGTGGGATGTGAAAATC+TGG 0.507075 2_4:+30682478 Msa0324810:intron
ACTCAAACCCAAATGTATGA+AGG 0.525757 2_4:-30681241 None:intergenic
TTGGAGCACATGTTGCTTGT+GGG 0.528993 2_4:+30681835 Msa0324810:CDS
CTCAAACCCAAATGTATGAA+GGG 0.530132 2_4:-30681240 None:intergenic
CATTTGAAATCAGCAATGCT+TGG 0.536764 2_4:+30681894 Msa0324810:CDS
AGTCACTGAAAAGTGTTGCC+AGG 0.553880 2_4:+30681304 Msa0324810:CDS
GGAGGACCATCAATCATCAT+CGG 0.605735 2_4:+30681187 Msa0324810:CDS
ATTGGAGCACATGTTGCTTG+TGG 0.616187 2_4:+30681834 Msa0324810:CDS
TCAAACCCAAATGTATGAAG+GGG 0.634737 2_4:-30681239 None:intergenic
GAATCCCCAAATTATCATGG+AGG 0.690106 2_4:+30681169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAGAATTTATATAAA+TGG - chr2_4:30682113-30682132 None:intergenic 10.0%
!! ATTTATATAAATTCTCTTAT+TGG + chr2_4:30682112-30682131 Msa0324810:intron 10.0%
!! AATAAGAGAATTTATATAAA+TGG - chr2_4:30682113-30682132 None:intergenic 10.0%
!! ATTTATATAAATTCTCTTAT+TGG + chr2_4:30682112-30682131 Msa0324810:intron 10.0%
!!! ATATCATCTCATATTTATTT+TGG + chr2_4:30682203-30682222 Msa0324810:intron 15.0%
!! AAAAATTTAAACACAACATT+TGG - chr2_4:30682385-30682404 None:intergenic 15.0%
!!! ATATCATCTCATATTTATTT+TGG + chr2_4:30682203-30682222 Msa0324810:intron 15.0%
!! AAAAATTTAAACACAACATT+TGG - chr2_4:30682385-30682404 None:intergenic 15.0%
!! ATATATGAACAAGAAAAAGT+AGG + chr2_4:30681721-30681740 Msa0324810:intron 20.0%
!!! ACTTTGAGAAAAATATAAAG+AGG - chr2_4:30681981-30682000 None:intergenic 20.0%
!!! TTTTACTTGCTTACATTTTT+TGG + chr2_4:30682401-30682420 Msa0324810:intron 20.0%
!!! TTTACTTGCTTACATTTTTT+GGG + chr2_4:30682402-30682421 Msa0324810:intron 20.0%
!!! AGTTTTTGAATAACAAATCA+AGG + chr2_4:30682668-30682687 Msa0324810:three_prime_UTR 20.0%
!! ATATATGAACAAGAAAAAGT+AGG + chr2_4:30681721-30681740 Msa0324810:intron 20.0%
!!! ACTTTGAGAAAAATATAAAG+AGG - chr2_4:30681981-30682000 None:intergenic 20.0%
!!! TTTTACTTGCTTACATTTTT+TGG + chr2_4:30682401-30682420 Msa0324810:intron 20.0%
!!! TTTACTTGCTTACATTTTTT+GGG + chr2_4:30682402-30682421 Msa0324810:intron 20.0%
!!! AGTTTTTGAATAACAAATCA+AGG + chr2_4:30682668-30682687 Msa0324810:three_prime_UTR 20.0%
! CGAAAAACTATGAAAACAAA+GGG - chr2_4:30681335-30681354 None:intergenic 25.0%
! ACGAAAAACTATGAAAACAA+AGG - chr2_4:30681336-30681355 None:intergenic 25.0%
! TTGAGTATGTTACATAGTTA+TGG + chr2_4:30681665-30681684 Msa0324810:intron 25.0%
! ACAAGAAAAAGTAGGTAATT+AGG + chr2_4:30681729-30681748 Msa0324810:intron 25.0%
! AATTAGGAGTGATTTGATAT+TGG + chr2_4:30681745-30681764 Msa0324810:intron 25.0%
! CGGATTCTGATTTAAATAAT+TGG - chr2_4:30682008-30682027 None:intergenic 25.0%
! CACATAAAGATAAATCGTTT+GGG - chr2_4:30682043-30682062 None:intergenic 25.0%
! TCACATAAAGATAAATCGTT+TGG - chr2_4:30682044-30682063 None:intergenic 25.0%
!! AAATTCTCTTATTGGTGATT+TGG + chr2_4:30682120-30682139 Msa0324810:intron 25.0%
!!! CTCATATTTATTTTGGTACT+TGG + chr2_4:30682210-30682229 Msa0324810:intron 25.0%
!! TGTTTTACTTACTTTATAGC+CGG - chr2_4:30682244-30682263 None:intergenic 25.0%
! GCTATAAAGTAAGTAAAACA+TGG + chr2_4:30682244-30682263 Msa0324810:intron 25.0%
! ATCATGATTGGTATAATCAT+TGG - chr2_4:30682270-30682289 None:intergenic 25.0%
!!! TTACTTGCTTACATTTTTTG+GGG + chr2_4:30682403-30682422 Msa0324810:intron 25.0%
! CGAAAAACTATGAAAACAAA+GGG - chr2_4:30681335-30681354 None:intergenic 25.0%
! ACGAAAAACTATGAAAACAA+AGG - chr2_4:30681336-30681355 None:intergenic 25.0%
! TTGAGTATGTTACATAGTTA+TGG + chr2_4:30681665-30681684 Msa0324810:intron 25.0%
! ACAAGAAAAAGTAGGTAATT+AGG + chr2_4:30681729-30681748 Msa0324810:intron 25.0%
! AATTAGGAGTGATTTGATAT+TGG + chr2_4:30681745-30681764 Msa0324810:intron 25.0%
! CGGATTCTGATTTAAATAAT+TGG - chr2_4:30682008-30682027 None:intergenic 25.0%
! CACATAAAGATAAATCGTTT+GGG - chr2_4:30682043-30682062 None:intergenic 25.0%
! TCACATAAAGATAAATCGTT+TGG - chr2_4:30682044-30682063 None:intergenic 25.0%
!! AAATTCTCTTATTGGTGATT+TGG + chr2_4:30682120-30682139 Msa0324810:intron 25.0%
!!! CTCATATTTATTTTGGTACT+TGG + chr2_4:30682210-30682229 Msa0324810:intron 25.0%
!! TGTTTTACTTACTTTATAGC+CGG - chr2_4:30682244-30682263 None:intergenic 25.0%
! GCTATAAAGTAAGTAAAACA+TGG + chr2_4:30682244-30682263 Msa0324810:intron 25.0%
! ATCATGATTGGTATAATCAT+TGG - chr2_4:30682270-30682289 None:intergenic 25.0%
!!! TTACTTGCTTACATTTTTTG+GGG + chr2_4:30682403-30682422 Msa0324810:intron 25.0%
ATTTACCCCTTCATACATTT+GGG + chr2_4:30681234-30681253 Msa0324810:CDS 30.0%
AATTAAGCACATATACTCCT+TGG + chr2_4:30681400-30681419 Msa0324810:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr2_4:30681471-30681490 Msa0324810:intron 30.0%
!!! TTTTTGGGGTTAGAATTGTT+TGG + chr2_4:30682417-30682436 Msa0324810:intron 30.0%
!!! TTTTGGGGTTAGAATTGTTT+GGG + chr2_4:30682418-30682437 Msa0324810:intron 30.0%
!!! GATCTGTTTTTTGAGTTTGA+AGG - chr2_4:30682513-30682532 None:intergenic 30.0%
TGCATACTTCTTTAGCATAT+TGG - chr2_4:30682604-30682623 None:intergenic 30.0%
ATTTACCCCTTCATACATTT+GGG + chr2_4:30681234-30681253 Msa0324810:CDS 30.0%
AATTAAGCACATATACTCCT+TGG + chr2_4:30681400-30681419 Msa0324810:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr2_4:30681471-30681490 Msa0324810:intron 30.0%
!!! TTTTTGGGGTTAGAATTGTT+TGG + chr2_4:30682417-30682436 Msa0324810:intron 30.0%
!!! TTTTGGGGTTAGAATTGTTT+GGG + chr2_4:30682418-30682437 Msa0324810:intron 30.0%
!!! GATCTGTTTTTTGAGTTTGA+AGG - chr2_4:30682513-30682532 None:intergenic 30.0%
TGCATACTTCTTTAGCATAT+TGG - chr2_4:30682604-30682623 None:intergenic 30.0%
! AAAACCAAAAGCTGCTGATT+TGG + chr2_4:30681211-30681230 Msa0324810:CDS 35.0%
! AAATCCAAATCAGCAGCTTT+TGG - chr2_4:30681218-30681237 None:intergenic 35.0%
GATTTACCCCTTCATACATT+TGG + chr2_4:30681233-30681252 Msa0324810:CDS 35.0%
TCAAACCCAAATGTATGAAG+GGG - chr2_4:30681242-30681261 None:intergenic 35.0%
CTCAAACCCAAATGTATGAA+GGG - chr2_4:30681243-30681262 None:intergenic 35.0%
ACTCAAACCCAAATGTATGA+AGG - chr2_4:30681244-30681263 None:intergenic 35.0%
GTGTCATCAAACAAAGTTTC+TGG + chr2_4:30681272-30681291 Msa0324810:CDS 35.0%
! ACTTTTCAGTGACTTGAAGA+TGG - chr2_4:30681298-30681317 None:intergenic 35.0%
ACATGATCATGTCTAATCCA+AGG - chr2_4:30681420-30681439 None:intergenic 35.0%
TGAGCTTAGTTCAATTGGTA+TGG + chr2_4:30681449-30681468 Msa0324810:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr2_4:30681476-30681495 Msa0324810:intron 35.0%
! ATGATCATGTCTCTTTTTGG+TGG - chr2_4:30681517-30681536 None:intergenic 35.0%
! CACATGATCATGTCTCTTTT+TGG - chr2_4:30681520-30681539 None:intergenic 35.0%
AAAGAGACATGATCATGTGT+TGG + chr2_4:30681521-30681540 Msa0324810:intron 35.0%
! CATTTGAAATCAGCAATGCT+TGG + chr2_4:30681894-30681913 Msa0324810:CDS 35.0%
!!! TGGTTTTGGCAACACTTAAA+GGG - chr2_4:30681944-30681963 None:intergenic 35.0%
!!! ATGGTTTTGGCAACACTTAA+AGG - chr2_4:30681945-30681964 None:intergenic 35.0%
TTGAAGACAATGTCGCTAAT+TGG + chr2_4:30682078-30682097 Msa0324810:intron 35.0%
!! TCTTTTGCATAATCTGGAAC+AGG - chr2_4:30682576-30682595 None:intergenic 35.0%
! AAAACCAAAAGCTGCTGATT+TGG + chr2_4:30681211-30681230 Msa0324810:CDS 35.0%
! AAATCCAAATCAGCAGCTTT+TGG - chr2_4:30681218-30681237 None:intergenic 35.0%
GATTTACCCCTTCATACATT+TGG + chr2_4:30681233-30681252 Msa0324810:CDS 35.0%
TCAAACCCAAATGTATGAAG+GGG - chr2_4:30681242-30681261 None:intergenic 35.0%
CTCAAACCCAAATGTATGAA+GGG - chr2_4:30681243-30681262 None:intergenic 35.0%
ACTCAAACCCAAATGTATGA+AGG - chr2_4:30681244-30681263 None:intergenic 35.0%
GTGTCATCAAACAAAGTTTC+TGG + chr2_4:30681272-30681291 Msa0324810:CDS 35.0%
! ACTTTTCAGTGACTTGAAGA+TGG - chr2_4:30681298-30681317 None:intergenic 35.0%
ACATGATCATGTCTAATCCA+AGG - chr2_4:30681420-30681439 None:intergenic 35.0%
TGAGCTTAGTTCAATTGGTA+TGG + chr2_4:30681449-30681468 Msa0324810:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr2_4:30681476-30681495 Msa0324810:intron 35.0%
! ATGATCATGTCTCTTTTTGG+TGG - chr2_4:30681517-30681536 None:intergenic 35.0%
! CACATGATCATGTCTCTTTT+TGG - chr2_4:30681520-30681539 None:intergenic 35.0%
AAAGAGACATGATCATGTGT+TGG + chr2_4:30681521-30681540 Msa0324810:intron 35.0%
! CATTTGAAATCAGCAATGCT+TGG + chr2_4:30681894-30681913 Msa0324810:CDS 35.0%
!!! TGGTTTTGGCAACACTTAAA+GGG - chr2_4:30681944-30681963 None:intergenic 35.0%
!!! ATGGTTTTGGCAACACTTAA+AGG - chr2_4:30681945-30681964 None:intergenic 35.0%
TTGAAGACAATGTCGCTAAT+TGG + chr2_4:30682078-30682097 Msa0324810:intron 35.0%
!! TCTTTTGCATAATCTGGAAC+AGG - chr2_4:30682576-30682595 None:intergenic 35.0%
! GTTTTGCCGATGATGATTGA+TGG - chr2_4:30681196-30681215 None:intergenic 40.0%
TGAAAACAAAGGGTTTGACC+TGG - chr2_4:30681325-30681344 None:intergenic 40.0%
CCAATTGAACTAAGCTCACA+AGG - chr2_4:30681447-30681466 None:intergenic 40.0%
CCTTGTGAGCTTAGTTCAAT+TGG + chr2_4:30681444-30681463 Msa0324810:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr2_4:30681477-30681496 Msa0324810:intron 40.0%
!! ATCATGTCTCTTTTTGGTGG+TGG - chr2_4:30681514-30681533 None:intergenic 40.0%
GATATGTGTCAGTATCACGT+CGG - chr2_4:30681566-30681585 None:intergenic 40.0%
! TGTCTATGTCCGTGTTTTGT+TGG + chr2_4:30681633-30681652 Msa0324810:intron 40.0%
ACACGAACACCAACAAAACA+CGG - chr2_4:30681645-30681664 None:intergenic 40.0%
! CTTTTAGTGTGCTTCATGGA+GGG + chr2_4:30681778-30681797 Msa0324810:CDS 40.0%
! TTTTAGTGTGCTTCATGGAG+GGG + chr2_4:30681779-30681798 Msa0324810:CDS 40.0%
TGTGGGTATAAAAGAGTTGC+TGG + chr2_4:30681852-30681871 Msa0324810:CDS 40.0%
!! GGTTTTGGCAACACTTAAAG+GGG - chr2_4:30681943-30681962 None:intergenic 40.0%
! AAGTGTTGCCAAAACCATTC+AGG + chr2_4:30681947-30681966 Msa0324810:CDS 40.0%
! AGCATTCACCTGAATGGTTT+TGG - chr2_4:30681958-30681977 None:intergenic 40.0%
CGTTTGGGAAAACTTGAGTA+CGG - chr2_4:30682028-30682047 None:intergenic 40.0%
ACAATGTCGCTAATTGGCTA+TGG + chr2_4:30682084-30682103 Msa0324810:intron 40.0%
AGTTGAGCTCGAATCATGAT+TGG - chr2_4:30682282-30682301 None:intergenic 40.0%
! GCAGCTTCTTTTGCATAATC+TGG - chr2_4:30682582-30682601 None:intergenic 40.0%
GATGGTCCTCCATGATAATT+TGG - chr2_4:30681178-30681197 None:intergenic 40.0%
! GTTTTGCCGATGATGATTGA+TGG - chr2_4:30681196-30681215 None:intergenic 40.0%
TGAAAACAAAGGGTTTGACC+TGG - chr2_4:30681325-30681344 None:intergenic 40.0%
CCAATTGAACTAAGCTCACA+AGG - chr2_4:30681447-30681466 None:intergenic 40.0%
CCTTGTGAGCTTAGTTCAAT+TGG + chr2_4:30681444-30681463 Msa0324810:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr2_4:30681477-30681496 Msa0324810:intron 40.0%
!! ATCATGTCTCTTTTTGGTGG+TGG - chr2_4:30681514-30681533 None:intergenic 40.0%
GATATGTGTCAGTATCACGT+CGG - chr2_4:30681566-30681585 None:intergenic 40.0%
! TGTCTATGTCCGTGTTTTGT+TGG + chr2_4:30681633-30681652 Msa0324810:intron 40.0%
ACACGAACACCAACAAAACA+CGG - chr2_4:30681645-30681664 None:intergenic 40.0%
! CTTTTAGTGTGCTTCATGGA+GGG + chr2_4:30681778-30681797 Msa0324810:CDS 40.0%
! TTTTAGTGTGCTTCATGGAG+GGG + chr2_4:30681779-30681798 Msa0324810:CDS 40.0%
TGTGGGTATAAAAGAGTTGC+TGG + chr2_4:30681852-30681871 Msa0324810:CDS 40.0%
!! GGTTTTGGCAACACTTAAAG+GGG - chr2_4:30681943-30681962 None:intergenic 40.0%
! AAGTGTTGCCAAAACCATTC+AGG + chr2_4:30681947-30681966 Msa0324810:CDS 40.0%
! AGCATTCACCTGAATGGTTT+TGG - chr2_4:30681958-30681977 None:intergenic 40.0%
CGTTTGGGAAAACTTGAGTA+CGG - chr2_4:30682028-30682047 None:intergenic 40.0%
ACAATGTCGCTAATTGGCTA+TGG + chr2_4:30682084-30682103 Msa0324810:intron 40.0%
AGTTGAGCTCGAATCATGAT+TGG - chr2_4:30682282-30682301 None:intergenic 40.0%
! GCAGCTTCTTTTGCATAATC+TGG - chr2_4:30682582-30682601 None:intergenic 40.0%
GGAGGACCATCAATCATCAT+CGG + chr2_4:30681187-30681206 Msa0324810:CDS 45.0%
!! AGTCACTGAAAAGTGTTGCC+AGG + chr2_4:30681304-30681323 Msa0324810:CDS 45.0%
! CAGCCTTTTAGTGTGCTTCA+TGG + chr2_4:30681774-30681793 Msa0324810:intron 45.0%
CCTCCATGAAGCACACTAAA+AGG - chr2_4:30681780-30681799 None:intergenic 45.0%
! CCTTTTAGTGTGCTTCATGG+AGG + chr2_4:30681777-30681796 Msa0324810:CDS 45.0%
GCTGAAGCTCTTGCAAGTAT+TGG + chr2_4:30681816-30681835 Msa0324810:CDS 45.0%
! ATTGGAGCACATGTTGCTTG+TGG + chr2_4:30681834-30681853 Msa0324810:CDS 45.0%
! TTGGAGCACATGTTGCTTGT+GGG + chr2_4:30681835-30681854 Msa0324810:CDS 45.0%
!! AAGAGGAGCATTCACCTGAA+TGG - chr2_4:30681964-30681983 None:intergenic 45.0%
TGGGGTTAGAATTGTTTGGG+CGG + chr2_4:30682421-30682440 Msa0324810:intron 45.0%
TTACACTTCGATCCTGTTGC+AGG + chr2_4:30682458-30682477 Msa0324810:intron 45.0%
AGGTGTGGGATGTGAAAATC+TGG + chr2_4:30682478-30682497 Msa0324810:intron 45.0%
GGAGGACCATCAATCATCAT+CGG + chr2_4:30681187-30681206 Msa0324810:CDS 45.0%
!! AGTCACTGAAAAGTGTTGCC+AGG + chr2_4:30681304-30681323 Msa0324810:CDS 45.0%
! CAGCCTTTTAGTGTGCTTCA+TGG + chr2_4:30681774-30681793 Msa0324810:intron 45.0%
CCTCCATGAAGCACACTAAA+AGG - chr2_4:30681780-30681799 None:intergenic 45.0%
! CCTTTTAGTGTGCTTCATGG+AGG + chr2_4:30681777-30681796 Msa0324810:CDS 45.0%
GCTGAAGCTCTTGCAAGTAT+TGG + chr2_4:30681816-30681835 Msa0324810:CDS 45.0%
! ATTGGAGCACATGTTGCTTG+TGG + chr2_4:30681834-30681853 Msa0324810:CDS 45.0%
! TTGGAGCACATGTTGCTTGT+GGG + chr2_4:30681835-30681854 Msa0324810:CDS 45.0%
!! AAGAGGAGCATTCACCTGAA+TGG - chr2_4:30681964-30681983 None:intergenic 45.0%
TGGGGTTAGAATTGTTTGGG+CGG + chr2_4:30682421-30682440 Msa0324810:intron 45.0%
TTACACTTCGATCCTGTTGC+AGG + chr2_4:30682458-30682477 Msa0324810:intron 45.0%
AGGTGTGGGATGTGAAAATC+TGG + chr2_4:30682478-30682497 Msa0324810:intron 45.0%
! TTGGTACTTGGCTCGATGTC+CGG + chr2_4:30682222-30682241 Msa0324810:intron 50.0%
TTCGATCCTGTTGCAGGTGT+GGG + chr2_4:30682464-30682483 Msa0324810:intron 50.0%
! TTGGTACTTGGCTCGATGTC+CGG + chr2_4:30682222-30682241 Msa0324810:intron 50.0%
TTCGATCCTGTTGCAGGTGT+GGG + chr2_4:30682464-30682483 Msa0324810:intron 50.0%
!!! GTCTCTTTTTGGTGGTGGCC+AGG - chr2_4:30681509-30681528 None:intergenic 55.0%
CTTCGATCCTGTTGCAGGTG+TGG + chr2_4:30682463-30682482 Msa0324810:intron 55.0%
TCACATCCCACACCTGCAAC+AGG - chr2_4:30682473-30682492 None:intergenic 55.0%
!!! GTCTCTTTTTGGTGGTGGCC+AGG - chr2_4:30681509-30681528 None:intergenic 55.0%
CTTCGATCCTGTTGCAGGTG+TGG + chr2_4:30682463-30682482 Msa0324810:intron 55.0%
TCACATCCCACACCTGCAAC+AGG - chr2_4:30682473-30682492 None:intergenic 55.0%
GCAAGGTCCGGGTTCGAACC+TGG + chr2_4:30681488-30681507 Msa0324810:intron 65.0%
GTGGTGGCCAGGTTCGAACC+CGG - chr2_4:30681498-30681517 None:intergenic 65.0%
GCAAGGTCCGGGTTCGAACC+TGG + chr2_4:30681488-30681507 Msa0324810:intron 65.0%
GTGGTGGCCAGGTTCGAACC+CGG - chr2_4:30681498-30681517 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 30681177 30682783 30681177 ID=Msa0324810;Name=Msa0324810
chr2_4 mRNA 30681177 30682783 30681177 ID=Msa0324810-mRNA-1;Parent=Msa0324810;Name=Msa0324810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=8|1|1|1|1|1|3|151|161
chr2_4 exon 30681177 30681325 30681177 ID=Msa0324810-mRNA-1:exon:10255;Parent=Msa0324810-mRNA-1
chr2_4 exon 30681777 30681968 30681777 ID=Msa0324810-mRNA-1:exon:10256;Parent=Msa0324810-mRNA-1
chr2_4 exon 30682480 30682783 30682480 ID=Msa0324810-mRNA-1:exon:10257;Parent=Msa0324810-mRNA-1
chr2_4 five_prime_UTR 30681177 30681184 30681177 ID=Msa0324810-mRNA-1:five_prime_utr;Parent=Msa0324810-mRNA-1
chr2_4 CDS 30681185 30681325 30681185 ID=Msa0324810-mRNA-1:cds;Parent=Msa0324810-mRNA-1
chr2_4 CDS 30681777 30681968 30681777 ID=Msa0324810-mRNA-1:cds;Parent=Msa0324810-mRNA-1
chr2_4 CDS 30682480 30682632 30682480 ID=Msa0324810-mRNA-1:cds;Parent=Msa0324810-mRNA-1
chr2_4 three_prime_UTR 30682633 30682783 30682633 ID=Msa0324810-mRNA-1:three_prime_utr;Parent=Msa0324810-mRNA-1
Gene Sequence

>Msa0324810

ATGGAGGACCATCAATCATCATCGGCAAAACCAAAAGCTGCTGATTTGGATTTACCCCTTCATACATTTGGGTTTGAGTTTCAAGATGTGTCATCAAACAAAGTTTCTGGCCATCTTCAAGTCACTGAAAAGTGTTGCCAGCCTTTTAGTGTGCTTCATGGAGGGGTATCAGCAGTGATAGCTGAAGCTCTTGCAAGTATTGGAGCACATGTTGCTTGTGGGTATAAAAGAGTTGCTGGAATTCAACTTAGCATCAATCATTTGAAATCAGCAATGCTTGGTGACTTGATCTATGCTGAAGCAACCCCTTTAAGTGTTGCCAAAACCATTCAGGTGTGGGATGTGAAAATCTGGAAGATCGATCCTTCAAACTCAAAAAACAGATCGTTGATAGCATATTCTAGAGTAACTCTTAAAAGCAACATGCCTGTTCCAGATTATGCAAAAGAAGCTGCCAATATGCTAAAGAAGTATGCAAAACTGTAA

Protein sequence

>Msa0324810

MEDHQSSSAKPKAADLDLPLHTFGFEFQDVSSNKVSGHLQVTEKCCQPFSVLHGGVSAVIAEALASIGAHVACGYKRVAGIQLSINHLKSAMLGDLIYAEATPLSVAKTIQVWDVKIWKIDPSNSKNRSLIAYSRVTLKSNMPVPDYAKEAANMLKKYAKL*