AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008750 MtrunA17_Chr7g0219041 99.114 677 6 0 1 677 1 677 0.0 1382
Msa1008750 MtrunA17_Chr3g0086881 41.291 666 343 7 13 677 1 619 1.56e-173 509
Msa1008750 MtrunA17_Chr4g0057561 43.029 581 296 13 116 677 126 690 9.27e-138 419
Msa1008750 MtrunA17_Chr8g0344461 38.816 608 318 14 98 666 13 605 2.85e-122 377
Msa1008750 MtrunA17_Chr5g0431731 32.931 662 401 13 16 667 6 634 1.12e-110 348
Msa1008750 MtrunA17_Chr3g0106431 32.730 663 387 11 16 667 6 620 6.95e-100 319
Msa1008750 MtrunA17_Chr1g0177671 32.143 532 313 7 150 666 127 625 1.25e-88 290
Msa1008750 MtrunA17_Chr1g0197101 31.725 539 313 8 154 666 132 641 1.38e-88 290
Msa1008750 MtrunA17_Chr7g0224041 30.948 601 384 15 83 666 64 650 6.33e-86 283
Msa1008750 MtrunA17_Chr2g0327741 32.369 553 333 10 117 666 67 581 1.20e-85 280
Msa1008750 MtrunA17_Chr6g0462011 30.726 537 323 8 150 667 220 726 5.27e-83 277
Msa1008750 MtrunA17_Chr5g0431741 35.669 471 284 8 206 669 237 695 4.69e-82 274
Msa1008750 MtrunA17_Chr4g0030621 29.908 545 362 9 118 660 72 598 6.59e-75 253
Msa1008750 MtrunA17_Chr1g0182041 32.054 521 327 10 151 664 100 600 1.01e-74 252
Msa1008750 MtrunA17_Chr1g0214001 29.912 565 349 12 150 677 123 677 1.26e-73 251
Msa1008750 MtrunA17_Chr1g0182031 31.549 523 328 11 151 664 98 599 3.13e-67 231
Msa1008750 MtrunA17_Chr5g0432091 30.365 438 281 8 241 665 276 702 1.73e-55 201
Msa1008750 MtrunA17_Chr5g0431811 30.645 372 212 5 217 572 268 609 1.95e-48 183
Msa1008750 MtrunA17_Chr5g0431811 33.714 175 112 2 498 669 898 1071 2.77e-20 96.3
Msa1008750 MtrunA17_Chr5g0432041 27.232 448 294 9 225 664 250 673 8.90e-41 158
Msa1008750 MtrunA17_Chr4g0002391 26.519 543 311 15 157 676 174 651 1.32e-35 143
Msa1008750 MtrunA17_Chr5g0431761 27.667 300 198 3 215 514 256 536 1.36e-34 139
Msa1008750 MtrunA17_Chr3g0104851 26.752 471 299 14 209 664 227 666 3.37e-32 132
Msa1008750 MtrunA17_Chr1g0147911 24.112 535 336 12 156 672 183 665 2.12e-29 124
Msa1008750 MtrunA17_Chr1g0152401 25.721 416 283 9 237 637 257 661 2.38e-29 124
Msa1008750 MtrunA17_Chr5g0431971 26.994 326 205 6 348 668 30 327 2.86e-28 116
Msa1008750 MtrunA17_Chr5g0431871 33.898 177 115 1 226 400 1 177 1.25e-27 110
Msa1008750 MtrunA17_Chr2g0300651 22.847 569 353 15 114 665 139 638 4.15e-25 110
Msa1008750 MtrunA17_Chr5g0444661 29.758 289 176 7 319 603 158 423 2.56e-23 103
Msa1008750 MtrunA17_Chr5g0431881 33.143 175 113 2 498 669 53 226 4.35e-21 92.8
Msa1008750 MtrunA17_Chr5g0431991 24.434 221 146 6 187 403 213 416 2.61e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008750 AT3G29400.1 48.748 679 310 9 12 677 5 658 0.0 583
Msa1008750 AT5G61010.1 40.183 657 353 6 10 665 8 625 1.68e-164 487
Msa1008750 AT5G61010.2 40.183 657 353 6 10 665 8 625 1.68e-164 487
Msa1008750 AT5G50380.1 42.211 597 290 12 109 677 113 682 3.42e-149 449
Msa1008750 AT3G14090.1 38.333 540 295 10 153 666 86 613 3.94e-118 367
Msa1008750 AT1G72470.1 36.438 612 323 15 101 666 30 621 4.05e-114 357
Msa1008750 AT1G54090.1 41.203 449 249 7 226 666 170 611 2.16e-109 344
Msa1008750 AT5G58430.1 31.429 665 392 12 16 667 6 619 4.47e-103 328
Msa1008750 AT5G03540.1 30.396 681 391 15 24 676 13 638 1.43e-90 295
Msa1008750 AT5G03540.2 32.784 546 312 8 151 676 13 523 1.54e-90 291
Msa1008750 AT1G07000.1 30.344 669 372 16 16 667 6 597 2.08e-89 291
Msa1008750 AT5G03540.3 30.029 686 395 14 24 666 13 656 6.60e-89 291
Msa1008750 AT5G52340.1 30.783 562 348 8 115 666 93 623 5.54e-86 283
Msa1008750 AT5G59730.2 32.737 559 350 11 118 668 60 600 4.20e-83 275
Msa1008750 AT5G59730.1 32.737 559 350 11 118 668 60 600 5.77e-83 275
Msa1008750 AT2G28640.1 30.577 520 328 6 151 669 94 581 1.49e-81 270
Msa1008750 AT5G13150.1 31.690 568 356 14 114 667 96 645 2.50e-81 271
Msa1008750 AT1G07725.1 32.563 519 324 9 151 666 96 591 5.35e-81 269
Msa1008750 AT5G13990.1 30.635 630 353 17 76 667 99 682 1.51e-79 267
Msa1008750 AT2G39380.1 29.211 558 365 7 118 667 76 611 7.73e-77 258
Msa1008750 AT3G09520.1 29.000 600 367 13 88 664 41 604 1.74e-70 241
Msa1008750 AT5G52350.1 30.684 453 284 4 221 666 148 577 3.15e-69 237
Msa1008750 AT3G09530.1 28.996 538 349 8 141 666 86 602 5.79e-65 226
Msa1008750 AT3G55150.1 28.342 561 368 9 117 667 75 611 3.22e-64 224
Msa1008750 AT2G28650.1 29.320 515 307 9 151 664 96 554 5.62e-59 209
Msa1008750 AT4G31540.1 25.056 443 303 7 232 664 231 654 1.70e-33 137
Msa1008750 AT1G51640.1 24.169 451 297 9 237 665 199 626 6.25e-23 104

Find 169 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTAGTGATTAGTGTTTC+TGG 0.079994 7_1:-9329393 Msa1008750:five_prime_UTR
GTTCAAAAGGTTGCCTATTC+TGG 0.158452 7_1:+9328632 None:intergenic
TCTAACAATGGCTTGTATTT+TGG 0.182205 7_1:-9327086 Msa1008750:three_prime_UTR
AGACATATTGTGATGGCTTT+AGG 0.215581 7_1:-9329084 Msa1008750:CDS
TCAATCGATGATTTGGGATT+TGG 0.227503 7_1:-9328833 Msa1008750:CDS
GAGAAGGAGGAGGGGAAGAT+AGG 0.232008 7_1:-9328979 Msa1008750:CDS
CAAAGATCAAAAGATGGATT+TGG 0.241414 7_1:-9328279 Msa1008750:CDS
CTTCTCACTTTGTATGTTCA+TGG 0.251343 7_1:+9328996 None:intergenic
GTTCGCCTTCTCCGAAAATT+TGG 0.255340 7_1:+9328203 None:intergenic
AGGTTTGAAATTGAAGATTT+TGG 0.260620 7_1:-9329210 Msa1008750:five_prime_UTR
GGGCTTTGAAAATCTTTGTT+AGG 0.261655 7_1:-9328258 Msa1008750:CDS
AGGAAGATCAATCGATGATT+TGG 0.283223 7_1:-9328840 Msa1008750:CDS
GACATATTGTGATGGCTTTA+GGG 0.283742 7_1:-9329083 Msa1008750:CDS
TATTGAAGATGTCTTGAAAA+TGG 0.283952 7_1:-9328320 Msa1008750:CDS
TGATTTAGAAAATTATCTTT+TGG 0.292941 7_1:-9327192 Msa1008750:CDS
TACATGGCTGAAAAGGTTAA+AGG 0.293386 7_1:-9327578 Msa1008750:CDS
ACCAATCTCAAGTTTGTCTA+TGG 0.294396 7_1:+9329908 None:intergenic
TTCCATTCTCAACTTTCTTA+AGG 0.294818 7_1:-9327459 Msa1008750:CDS
AGTTGTTGCAAAATCCTATT+AGG 0.296540 7_1:-9327148 Msa1008750:CDS
CAATCGATGATTTGGGATTT+GGG 0.298646 7_1:-9328832 Msa1008750:CDS
GTTAGAATTTGAAGTTGTTT+TGG 0.303700 7_1:-9329266 Msa1008750:five_prime_UTR
TTAAAGTGATTCAAGCTTAT+AGG 0.315348 7_1:-9327274 Msa1008750:CDS
ACAACGACTTGGTTTGATTC+AGG 0.317391 7_1:-9328881 Msa1008750:CDS
AGGAGGAGGGGAAGATAGGG+AGG 0.319656 7_1:-9328975 Msa1008750:CDS
TGTTTGATGCAGGTGTAATA+AGG 0.320050 7_1:-9329479 Msa1008750:intron
TATTTACCTTCCTGAAAATC+AGG 0.326364 7_1:+9329609 None:intergenic
AAGCTTATACCATTGTTAGA+AGG 0.328404 7_1:-9328390 Msa1008750:CDS
TCGGCTTCGAGGATATTTAC+AGG 0.329702 7_1:-9327361 Msa1008750:CDS
TGCTATTATCATCTCCTAAT+AGG 0.331305 7_1:+9327134 None:intergenic
AAAGATCAAAAGATGGATTT+GGG 0.331630 7_1:-9328278 Msa1008750:CDS
ACAAAACAAGCTTGACTAAC+AGG 0.350658 7_1:+9328181 None:intergenic
CTTTGCAATGTTTGTGTCCA+AGG 0.354805 7_1:-9326918 Msa1008750:three_prime_UTR
GAAGATAGGGAGGGAAAAGG+AGG 0.356692 7_1:-9328965 Msa1008750:CDS
AGATTTGCGGATTTCTATAT+CGG 0.356841 7_1:-9327297 Msa1008750:CDS
TTCAGGAGAAAATAATGAAA+TGG 0.362671 7_1:-9328864 Msa1008750:CDS
TTTGGTGAAGCTATGTCTAT+TGG 0.365289 7_1:-9328121 Msa1008750:CDS
AGAAGGAGGAGGGGAAGATA+GGG 0.365916 7_1:-9328978 Msa1008750:CDS
CTCAACTTTCTTAAGGATGA+AGG 0.371916 7_1:-9327452 Msa1008750:CDS
TGACATCAATGCTTTGTATT+CGG 0.372086 7_1:-9328032 Msa1008750:CDS
TTCAGCTTCGCGAAGATTTG+CGG 0.372177 7_1:-9327310 Msa1008750:CDS
TTGTAGTGATTAGTGTTTCT+GGG 0.385784 7_1:-9329392 Msa1008750:five_prime_UTR
GGGGAAGATAGGGAGGGAAA+AGG 0.388497 7_1:-9328968 Msa1008750:CDS
AAGAAGATTCTGGCTGATCT+TGG 0.397682 7_1:-9329033 Msa1008750:CDS
AATGAACAAACACTCATCTA+AGG 0.398840 7_1:+9328363 None:intergenic
GGAAGATCAATCGATGATTT+GGG 0.400737 7_1:-9328839 Msa1008750:CDS
TTGGCTTCTGTTATCATCTT+CGG 0.401388 7_1:+9327739 None:intergenic
CAATGGCTGTTGAGGAATCT+AGG 0.406090 7_1:-9329155 Msa1008750:CDS
TTGAAGAATTTGATTATCAA+TGG 0.406925 7_1:-9329172 Msa1008750:exon
AAAATTTGAATATCTCGTAT+TGG 0.407384 7_1:+9329961 None:intergenic
GGACGAGGTGGACGAGGAGG+AGG 0.408834 7_1:-9328926 Msa1008750:CDS
TCTTCGCGAAGCTGAACATC+TGG 0.409566 7_1:+9327317 None:intergenic
GGCTTTGAAAATCTTTGTTA+GGG 0.412401 7_1:-9328257 Msa1008750:CDS
TCAGGAGAAAATAATGAAAT+GGG 0.414181 7_1:-9328863 Msa1008750:CDS
GTGTTTGTTCATTCTTGAAA+TGG 0.417456 7_1:-9328353 Msa1008750:CDS
TTCGGACGAGGTTGGTTCCT+CGG 0.417915 7_1:-9328014 Msa1008750:CDS
CGTGTCAGGTGACGATGAAA+TGG 0.419107 7_1:+9327772 None:intergenic
TATATGCCTCAAGGCCTACT+TGG 0.420731 7_1:-9326862 Msa1008750:three_prime_UTR
GAAAATGGAATGGGGTACTT+TGG 0.421152 7_1:-9328305 Msa1008750:CDS
CCAAGACTGAAGCAAATGAT+AGG 0.421729 7_1:+9327678 None:intergenic
TAATGCACACTAAGTGAAAC+AGG 0.423107 7_1:+9327052 None:intergenic
CAAGCTTATAGGACATTTGT+TGG 0.424622 7_1:-9327263 Msa1008750:CDS
CCTACATTACATGGCTGAAA+AGG 0.424669 7_1:-9327585 Msa1008750:CDS
ATTCAGTGCTTCGCTGTAAT+CGG 0.425187 7_1:+9327826 None:intergenic
CAGCTGTGATTCCTGATCTC+AGG 0.429360 7_1:-9328462 Msa1008750:CDS
AAATACTCAGACGTTTCTTC+AGG 0.429562 7_1:+9328808 None:intergenic
GAGAATTCGTATCAATTTCT+CGG 0.430289 7_1:+9328087 None:intergenic
TTCGTATCAATTTCTCGGGT+TGG 0.433899 7_1:+9328092 None:intergenic
CCTATCATTTGCTTCAGTCT+TGG 0.436027 7_1:-9327678 Msa1008750:CDS
AGCGAGGAAGATGTTGTTGA+TGG 0.439521 7_1:-9328586 Msa1008750:CDS
TTCTCTTCTCTTTCTAACTC+AGG 0.440235 7_1:+9329123 None:intergenic
ATCCTTAAGAAAGTTGAGAA+TGG 0.446088 7_1:+9327457 None:intergenic
TCTGAACTTAGGATCATATT+CGG 0.456601 7_1:-9327554 Msa1008750:CDS
GCAACCTGCTTATCCAGAAT+AGG 0.463293 7_1:-9328645 Msa1008750:CDS
TGTTCTTGGCTTTGATTGGT+GGG 0.463543 7_1:-9329429 Msa1008750:five_prime_UTR
CTGTTATCATCTTCGGTACC+CGG 0.467583 7_1:+9327746 None:intergenic
AGAATTCGTATCAATTTCTC+GGG 0.468076 7_1:+9328088 None:intergenic
ACATGGCTGAAAAGGTTAAA+GGG 0.470527 7_1:-9327577 Msa1008750:CDS
GTGTTGTGTTTGTGTTAGAA+TGG 0.473536 7_1:+9329774 None:intergenic
TCGGTACCCGGACTCGTGTC+AGG 0.474489 7_1:+9327758 None:intergenic
AATGGATCCGAAAACACAAC+TGG 0.475821 7_1:-9327526 Msa1008750:CDS
AAGCTTCTACCTCGGCTTCG+AGG 0.476916 7_1:-9327372 Msa1008750:CDS
CACGAGGTTCTGAACAGATT+GGG 0.480214 7_1:-9327977 Msa1008750:CDS
TTGTTCTTGGCTTTGATTGG+TGG 0.480339 7_1:-9329430 Msa1008750:five_prime_UTR
AAGTGATGAAAAGAAGATTC+TGG 0.481173 7_1:-9329043 Msa1008750:CDS
CCGTCAACAACGCCTTTAGT+TGG 0.482370 7_1:-9327902 Msa1008750:CDS
TCCTGGTAGATTTCCCTCAA+TGG 0.483428 7_1:-9327711 Msa1008750:CDS
CATTATATGTATGTAATGAT+TGG 0.487485 7_1:-9327034 Msa1008750:three_prime_UTR
GCGCATATTGATCGAGAAGT+TGG 0.488485 7_1:-9328767 Msa1008750:CDS
CAATGCTTTGTATTCGGACG+AGG 0.488922 7_1:-9328026 Msa1008750:CDS
TTTACAGGATTCAAACGGCT+TGG 0.489894 7_1:-9327346 Msa1008750:CDS
AGATGTCTTGAAAATGGAAT+GGG 0.491461 7_1:-9328314 Msa1008750:CDS
GATATGTTATGAATTATCTT+CGG 0.492481 7_1:-9327856 Msa1008750:CDS
GAGACATACTCAGGTTCAAA+AGG 0.492494 7_1:+9328619 None:intergenic
GCCATAGACAAACTTGAGAT+TGG 0.497133 7_1:-9329909 Msa1008750:five_prime_UTR
TGTTCATTCTTGAAATGGAA+AGG 0.497581 7_1:-9328348 Msa1008750:CDS
CCAACTAAAGGCGTTGTTGA+CGG 0.497916 7_1:+9327902 None:intergenic
GTTGCCTATTCTGGATAAGC+AGG 0.498736 7_1:+9328641 None:intergenic
TTGATTATCAATGGCTGTTG+AGG 0.499717 7_1:-9329163 Msa1008750:exon
AAAGGAGGATGATATAGATA+AGG 0.499854 7_1:-9328950 Msa1008750:CDS
CTTATAGGACATTTGTTGGA+AGG 0.502026 7_1:-9327259 Msa1008750:CDS
CCACGAGGTTCTGAACAGAT+TGG 0.503504 7_1:-9327978 Msa1008750:CDS
AGGAATTGCCGCGCCATTGA+GGG 0.506822 7_1:+9327698 None:intergenic
TTTGCGATACACCTGAGATC+AGG 0.508198 7_1:+9328451 None:intergenic
ATCAATTTCTCGGGTTGGTG+AGG 0.514697 7_1:+9328097 None:intergenic
AGGTTAAAGGGTCTGAACTT+AGG 0.515044 7_1:-9327565 Msa1008750:CDS
TGTATCCCTCCACCAACTAA+AGG 0.515506 7_1:+9327890 None:intergenic
GGGTTTATCTTGCAAGTGAA+AGG 0.515546 7_1:-9328237 Msa1008750:CDS
GAGGAGGAGGAAGAAGGTGT+TGG 0.517714 7_1:-9328913 Msa1008750:CDS
TCAACAACGCCTTTAGTTGG+TGG 0.518800 7_1:-9327899 Msa1008750:CDS
AACAGAAGCCAAGCATCTCC+TGG 0.521198 7_1:-9327728 Msa1008750:CDS
TCGTCACCTGACACGAGTCC+GGG 0.521282 7_1:-9327764 Msa1008750:CDS
AGCTTATACCATTGTTAGAA+GGG 0.522929 7_1:-9328389 Msa1008750:CDS
AATGAACAACCTACATTACA+TGG 0.524061 7_1:-9327594 Msa1008750:CDS
GAAATCTACCAGGAGATGCT+TGG 0.524343 7_1:+9327720 None:intergenic
TGGTTTCAAAGATCAAAAGA+TGG 0.529315 7_1:-9328285 Msa1008750:CDS
AAGATGTCTTGAAAATGGAA+TGG 0.530741 7_1:-9328315 Msa1008750:CDS
GGATATTTACAGGATTCAAA+CGG 0.532545 7_1:-9327351 Msa1008750:CDS
TAAGGAGGACGAGGTGGACG+AGG 0.533562 7_1:-9328932 Msa1008750:CDS
GGAGGATGATATAGATAAGG+AGG 0.534132 7_1:-9328947 Msa1008750:CDS
GGCTTATAGTGTTCTTCAGA+CGG 0.538239 7_1:-9328695 Msa1008750:CDS
TCTGAAAGATCAAGAAGAAG+AGG 0.540005 7_1:-9327798 Msa1008750:CDS
TGATATAGATAAGGAGGACG+AGG 0.540858 7_1:-9328941 Msa1008750:CDS
GAATACAAAGCATTGATGTC+AGG 0.541545 7_1:+9328034 None:intergenic
ACAACGCCTTTAGTTGGTGG+AGG 0.547732 7_1:-9327896 Msa1008750:CDS
CTGAGATCAGGAATCACAGC+TGG 0.549368 7_1:+9328463 None:intergenic
TGAAATACGAGAGAGCTAGT+TGG 0.555215 7_1:-9327484 Msa1008750:CDS
GTGGACGAGGAGGAGGAAGA+AGG 0.558808 7_1:-9328919 Msa1008750:CDS
GGAGGACGAGGTGGACGAGG+AGG 0.563413 7_1:-9328929 Msa1008750:CDS
TTCATAACATATCTCGCCAA+TGG 0.563562 7_1:+9327866 None:intergenic
GCCATTGAGGGAAATCTACC+AGG 0.565256 7_1:+9327710 None:intergenic
GGATCATATTCGGAGACGAA+TGG 0.566493 7_1:-9327544 Msa1008750:CDS
TTCTTCAGACGGCTATGACA+CGG 0.570975 7_1:-9328684 Msa1008750:CDS
TAGGAATTGCCGCGCCATTG+AGG 0.571255 7_1:+9327697 None:intergenic
TTTGAGACAGAATTTGAACC+GGG 0.573177 7_1:+9327419 None:intergenic
ATAAATAAATAAATCCAAGT+AGG 0.577610 7_1:+9326848 None:intergenic
AAGTTACGAAGCTTCTACCT+CGG 0.578858 7_1:-9327380 Msa1008750:CDS
TGTAAATATCCTCGAAGCCG+AGG 0.581914 7_1:+9327363 None:intergenic
GCTTTGTATTCGGACGAGGT+TGG 0.582361 7_1:-9328022 Msa1008750:CDS
GGAGGAGGGGAAGATAGGGA+GGG 0.582716 7_1:-9328974 Msa1008750:CDS
GTAGATAATTATATGCCTCA+AGG 0.585702 7_1:-9326871 Msa1008750:three_prime_UTR
GCGAGGAAGATGTTGTTGAT+GGG 0.586419 7_1:-9328585 Msa1008750:CDS
TGGTGGAGGGATACATCCAT+TGG 0.593262 7_1:-9327882 Msa1008750:CDS
CATGAACATACAAAGTGAGA+AGG 0.595930 7_1:-9328995 Msa1008750:CDS
CAACGCCTTTAGTTGGTGGA+GGG 0.597098 7_1:-9327895 Msa1008750:CDS
TGTGTTAGAATGGTAAAATG+AGG 0.598307 7_1:+9329784 None:intergenic
GGAGAAAATAATGAAATGGG+AGG 0.598922 7_1:-9328860 Msa1008750:CDS
GATCGAAACGAGACATACTC+AGG 0.599078 7_1:+9328610 None:intergenic
CATACAAAGTGAGAAGGAGG+AGG 0.600227 7_1:-9328989 Msa1008750:CDS
TTTATCTTGCAAGTGAAAGG+TGG 0.606242 7_1:-9328234 Msa1008750:CDS
ATCAATGACATGCTCTTCAG+TGG 0.607832 7_1:+9328495 None:intergenic
TACAAAGTGAGAAGGAGGAG+GGG 0.610000 7_1:-9328987 Msa1008750:CDS
GATGAAGGAATTCACGCTCC+CGG 0.612751 7_1:-9327437 Msa1008750:CDS
GGTGTTATTGAACAACGACT+TGG 0.615375 7_1:-9328892 Msa1008750:CDS
TATAGATAAGGAGGACGAGG+TGG 0.620009 7_1:-9328938 Msa1008750:CDS
TAAGGCATCCCTTCTAACAA+TGG 0.621969 7_1:+9328381 None:intergenic
AATCTTCTGCAAGATCTGCA+AGG 0.627162 7_1:+9329667 None:intergenic
ATACAAAGTGAGAAGGAGGA+GGG 0.633932 7_1:-9328988 Msa1008750:CDS
GAACATACAAAGTGAGAAGG+AGG 0.636230 7_1:-9328992 Msa1008750:CDS
ATATTGATCGAGAAGTTGGA+AGG 0.643451 7_1:-9328763 Msa1008750:CDS
ATAAATCCAAGTAGGCCTTG+AGG 0.646028 7_1:+9326856 None:intergenic
GTAGATTTCCCTCAATGGCG+CGG 0.659563 7_1:-9327706 Msa1008750:CDS
TGCAGCAAGACATATTGTGA+TGG 0.663518 7_1:-9329091 Msa1008750:CDS
GCACACTAAGTGAAACAGGA+AGG 0.666162 7_1:+9327056 None:intergenic
AGTCTTGGAGAACAATCTCG+AGG 0.679517 7_1:-9327663 Msa1008750:CDS
AAATAAATAAAATAATGTTG+TGG 0.682374 7_1:+9329871 None:intergenic
GGTTCACTTTGAATGCCACG+AGG 0.713802 7_1:-9327993 Msa1008750:CDS
CCAATCTGTTCAGAACCTCG+TGG 0.714380 7_1:+9327978 None:intergenic
GATGTCTTGAAAATGGAATG+GGG 0.730786 7_1:-9328313 Msa1008750:CDS
GTGGCATTCAAAGTGAACCG+AGG 0.739746 7_1:+9327997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAATAATGTTG+TGG + chr7_1:9326941-9326960 None:intergenic 10.0%
!!! GAGATATTCAAATTTTTTAA+GGG - chr7_1:9326855-9326874 Msa1008750:three_prime_UTR 15.0%
!!! TGATTTAGAAAATTATCTTT+TGG - chr7_1:9329617-9329636 Msa1008750:five_prime_UTR 15.0%
!!! CGAGATATTCAAATTTTTTA+AGG - chr7_1:9326854-9326873 Msa1008750:three_prime_UTR 20.0%
!!! AGTTTTTGGAGTTTTTAAAA+GGG + chr7_1:9326995-9327014 None:intergenic 20.0%
!!! AAGTTTTTGGAGTTTTTAAA+AGG + chr7_1:9326996-9327015 None:intergenic 20.0%
!!! AATTCAGTGTTTTCTTTAAT+TGG - chr7_1:9327270-9327289 Msa1008750:CDS 20.0%
!!! ATTCAGTGTTTTCTTTAATT+GGG - chr7_1:9327271-9327290 Msa1008750:CDS 20.0%
!!! TTTCTTTAATTGGGTTTTTT+TGG - chr7_1:9327280-9327299 Msa1008750:CDS 20.0%
!! CAAGAACAAAAAAATCAAAA+GGG + chr7_1:9327368-9327387 None:intergenic 20.0%
!!! GAAAAAAGTTTGAATTTTGA+AGG - chr7_1:9327492-9327511 Msa1008750:CDS 20.0%
!! TTGAAGAATTTGATTATCAA+TGG - chr7_1:9327637-9327656 Msa1008750:CDS 20.0%
!! GATATGTTATGAATTATCTT+CGG - chr7_1:9328953-9328972 Msa1008750:CDS 20.0%
!!! AATCCATTTTTATCTAACAA+TGG - chr7_1:9329711-9329730 Msa1008750:five_prime_UTR 20.0%
!! CATTATATGTATGTAATGAT+TGG - chr7_1:9329775-9329794 Msa1008750:five_prime_UTR 20.0%
!! TAAAGAATACATTGCAAAAA+AGG + chr7_1:9329822-9329841 None:intergenic 20.0%
!! GAGGAAAAAAACAAAGTTTT+TGG + chr7_1:9327009-9327028 None:intergenic 25.0%
!!! TTTATCTTGTTTTGTTCATC+TGG - chr7_1:9327229-9327248 Msa1008750:CDS 25.0%
!!! TTATCTTGTTTTGTTCATCT+GGG - chr7_1:9327230-9327249 Msa1008750:CDS 25.0%
!!! TTTTTGTTTTTGTTTGATGC+AGG - chr7_1:9327320-9327339 Msa1008750:CDS 25.0%
! CCAAGAACAAAAAAATCAAA+AGG + chr7_1:9327369-9327388 None:intergenic 25.0%
!!! CCTTTTGATTTTTTTGTTCT+TGG - chr7_1:9327366-9327385 Msa1008750:CDS 25.0%
!!! AATGCTTGAATTGATTTTGA+AGG - chr7_1:9327468-9327487 Msa1008750:CDS 25.0%
!!! TGTTTTTGAAGAAGTGAAAA+AGG - chr7_1:9327521-9327540 Msa1008750:CDS 25.0%
!!! GTTAGAATTTGAAGTTGTTT+TGG - chr7_1:9327543-9327562 Msa1008750:CDS 25.0%
!!! GTGATTGTTGTTGTTTTTTT+GGG - chr7_1:9327565-9327584 Msa1008750:CDS 25.0%
!!! AGGTTTGAAATTGAAGATTT+TGG - chr7_1:9327599-9327618 Msa1008750:CDS 25.0%
! TTCAGGAGAAAATAATGAAA+TGG - chr7_1:9327945-9327964 Msa1008750:CDS 25.0%
! TCAGGAGAAAATAATGAAAT+GGG - chr7_1:9327946-9327965 Msa1008750:CDS 25.0%
! TATTGAAGATGTCTTGAAAA+TGG - chr7_1:9328489-9328508 Msa1008750:CDS 25.0%
!! AAAGATCAAAAGATGGATTT+GGG - chr7_1:9328531-9328550 Msa1008750:CDS 25.0%
! TTAAAGTGATTCAAGCTTAT+AGG - chr7_1:9329535-9329554 Msa1008750:intron 25.0%
!! TATCTTTTGGATTTCTTTGA+AGG - chr7_1:9329630-9329649 Msa1008750:five_prime_UTR 25.0%
! AAGCCATTGTTAGATAAAAA+TGG + chr7_1:9329717-9329736 None:intergenic 25.0%
TGTGTTAGAATGGTAAAATG+AGG + chr7_1:9327028-9327047 None:intergenic 30.0%
TATTTACCTTCCTGAAAATC+AGG + chr7_1:9327203-9327222 None:intergenic 30.0%
!!! TTTTTGTTCTTGGCTTTGAT+TGG - chr7_1:9327376-9327395 Msa1008750:CDS 30.0%
TTGTAGTGATTAGTGTTTCT+GGG - chr7_1:9327417-9327436 Msa1008750:CDS 30.0%
!!! GGTGATTGTTGTTGTTTTTT+TGG - chr7_1:9327564-9327583 Msa1008750:CDS 30.0%
AAGTGATGAAAAGAAGATTC+TGG - chr7_1:9327766-9327785 Msa1008750:CDS 30.0%
AAAGGAGGATGATATAGATA+AGG - chr7_1:9327859-9327878 Msa1008750:CDS 30.0%
!! AAGAGTATAAGTTTTTGCAG+AGG - chr7_1:9328092-9328111 Msa1008750:CDS 30.0%
! AGAGTATAAGTTTTTGCAGA+GGG - chr7_1:9328093-9328112 Msa1008750:CDS 30.0%
!!! TTTTGGTGATGATTCATTTG+AGG - chr7_1:9328261-9328280 Msa1008750:CDS 30.0%
AAGCTTATACCATTGTTAGA+AGG - chr7_1:9328419-9328438 Msa1008750:CDS 30.0%
AGCTTATACCATTGTTAGAA+GGG - chr7_1:9328420-9328439 Msa1008750:CDS 30.0%
AATGAACAAACACTCATCTA+AGG + chr7_1:9328449-9328468 None:intergenic 30.0%
GTGTTTGTTCATTCTTGAAA+TGG - chr7_1:9328456-9328475 Msa1008750:CDS 30.0%
TGTTCATTCTTGAAATGGAA+AGG - chr7_1:9328461-9328480 Msa1008750:CDS 30.0%
AAGATGTCTTGAAAATGGAA+TGG - chr7_1:9328494-9328513 Msa1008750:CDS 30.0%
AGATGTCTTGAAAATGGAAT+GGG - chr7_1:9328495-9328514 Msa1008750:CDS 30.0%
TGGTTTCAAAGATCAAAAGA+TGG - chr7_1:9328524-9328543 Msa1008750:CDS 30.0%
! CAAAGATCAAAAGATGGATT+TGG - chr7_1:9328530-9328549 Msa1008750:CDS 30.0%
!! GGCTTTGAAAATCTTTGTTA+GGG - chr7_1:9328552-9328571 Msa1008750:CDS 30.0%
! ATTTTGCAGCTTCTGAATTT+TGG - chr7_1:9328670-9328689 Msa1008750:CDS 30.0%
AGAATTCGTATCAATTTCTC+GGG + chr7_1:9328724-9328743 None:intergenic 30.0%
GAGAATTCGTATCAATTTCT+CGG + chr7_1:9328725-9328744 None:intergenic 30.0%
TGACATCAATGCTTTGTATT+CGG - chr7_1:9328777-9328796 Msa1008750:CDS 30.0%
AATGAACAACCTACATTACA+TGG - chr7_1:9329215-9329234 Msa1008750:five_prime_UTR 30.0%
TCTGAACTTAGGATCATATT+CGG - chr7_1:9329255-9329274 Msa1008750:five_prime_UTR 30.0%
TTCCATTCTCAACTTTCTTA+AGG - chr7_1:9329350-9329369 Msa1008750:five_prime_UTR 30.0%
ATCCTTAAGAAAGTTGAGAA+TGG + chr7_1:9329355-9329374 None:intergenic 30.0%
!!! TTTTGAGACAGAATTTGAAC+CGG + chr7_1:9329394-9329413 None:intergenic 30.0%
GGATATTTACAGGATTCAAA+CGG - chr7_1:9329458-9329477 Msa1008750:five_prime_UTR 30.0%
AGATTTGCGGATTTCTATAT+CGG - chr7_1:9329512-9329531 Msa1008750:intron 30.0%
AGTTGTTGCAAAATCCTATT+AGG - chr7_1:9329661-9329680 Msa1008750:five_prime_UTR 30.0%
TGCTATTATCATCTCCTAAT+AGG + chr7_1:9329678-9329697 None:intergenic 30.0%
!! TCTAACAATGGCTTGTATTT+TGG - chr7_1:9329723-9329742 Msa1008750:five_prime_UTR 30.0%
GTAGATAATTATATGCCTCA+AGG - chr7_1:9329938-9329957 Msa1008750:five_prime_UTR 30.0%
ACCAATCTCAAGTTTGTCTA+TGG + chr7_1:9326904-9326923 None:intergenic 35.0%
GTGTTGTGTTTGTGTTAGAA+TGG + chr7_1:9327038-9327057 None:intergenic 35.0%
!! CAAGCAAAAAAAGCACTGTA+CGG + chr7_1:9327112-9327131 None:intergenic 35.0%
!! TCAACTTGTTCCTGATTTTC+AGG - chr7_1:9327190-9327209 Msa1008750:CDS 35.0%
TGTTTGATGCAGGTGTAATA+AGG - chr7_1:9327330-9327349 Msa1008750:CDS 35.0%
!!! TTGATTGGTGGGTTTTGTTA+AGG - chr7_1:9327391-9327410 Msa1008750:CDS 35.0%
GTTGTAGTGATTAGTGTTTC+TGG - chr7_1:9327416-9327435 Msa1008750:CDS 35.0%
!!! TGTTGTTGTTTTTTTGGGAG+AGG - chr7_1:9327570-9327589 Msa1008750:CDS 35.0%
!!! TTTTTTGGGAGAGGTGAAAA+AGG - chr7_1:9327579-9327598 Msa1008750:CDS 35.0%
TTGATTATCAATGGCTGTTG+AGG - chr7_1:9327646-9327665 Msa1008750:CDS 35.0%
TTCTCTTCTCTTTCTAACTC+AGG + chr7_1:9327689-9327708 None:intergenic 35.0%
AGACATATTGTGATGGCTTT+AGG - chr7_1:9327725-9327744 Msa1008750:CDS 35.0%
! GACATATTGTGATGGCTTTA+GGG - chr7_1:9327726-9327745 Msa1008750:CDS 35.0%
CTTCTCACTTTGTATGTTCA+TGG + chr7_1:9327816-9327835 None:intergenic 35.0%
CATGAACATACAAAGTGAGA+AGG - chr7_1:9327814-9327833 Msa1008750:CDS 35.0%
GGAGAAAATAATGAAATGGG+AGG - chr7_1:9327949-9327968 Msa1008750:CDS 35.0%
AGGAAGATCAATCGATGATT+TGG - chr7_1:9327969-9327988 Msa1008750:CDS 35.0%
GGAAGATCAATCGATGATTT+GGG - chr7_1:9327970-9327989 Msa1008750:CDS 35.0%
! TCAATCGATGATTTGGGATT+TGG - chr7_1:9327976-9327995 Msa1008750:CDS 35.0%
! CAATCGATGATTTGGGATTT+GGG - chr7_1:9327977-9327996 Msa1008750:CDS 35.0%
AAATACTCAGACGTTTCTTC+AGG + chr7_1:9328004-9328023 None:intergenic 35.0%
ATATTGATCGAGAAGTTGGA+AGG - chr7_1:9328046-9328065 Msa1008750:CDS 35.0%
! GGGAATTCTTTTGTCTCTTT+TGG - chr7_1:9328244-9328263 Msa1008750:CDS 35.0%
GATGTCTTGAAAATGGAATG+GGG - chr7_1:9328496-9328515 Msa1008750:CDS 35.0%
!! GGGCTTTGAAAATCTTTGTT+AGG - chr7_1:9328551-9328570 Msa1008750:CDS 35.0%
TTTATCTTGCAAGTGAAAGG+TGG - chr7_1:9328575-9328594 Msa1008750:CDS 35.0%
! TGGCTTAGTGACCAAATTTT+CGG - chr7_1:9328595-9328614 Msa1008750:CDS 35.0%
ACAAAACAAGCTTGACTAAC+AGG + chr7_1:9328631-9328650 None:intergenic 35.0%
TTTGGTGAAGCTATGTCTAT+TGG - chr7_1:9328688-9328707 Msa1008750:CDS 35.0%
!! GAATACAAAGCATTGATGTC+AGG + chr7_1:9328778-9328797 None:intergenic 35.0%
TTCATAACATATCTCGCCAA+TGG + chr7_1:9328946-9328965 None:intergenic 35.0%
TCTGAAAGATCAAGAAGAAG+AGG - chr7_1:9329011-9329030 Msa1008750:CDS 35.0%
TTGGCTTCTGTTATCATCTT+CGG + chr7_1:9329073-9329092 None:intergenic 35.0%
TACATGGCTGAAAAGGTTAA+AGG - chr7_1:9329231-9329250 Msa1008750:five_prime_UTR 35.0%
ACATGGCTGAAAAGGTTAAA+GGG - chr7_1:9329232-9329251 Msa1008750:five_prime_UTR 35.0%
! GAAACTTCCAGTTGTGTTTT+CGG + chr7_1:9329293-9329312 None:intergenic 35.0%
CTCAACTTTCTTAAGGATGA+AGG - chr7_1:9329357-9329376 Msa1008750:five_prime_UTR 35.0%
! TTTGAGACAGAATTTGAACC+GGG + chr7_1:9329393-9329412 None:intergenic 35.0%
CAAGCTTATAGGACATTTGT+TGG - chr7_1:9329546-9329565 Msa1008750:intron 35.0%
! CTTATAGGACATTTGTTGGA+AGG - chr7_1:9329550-9329569 Msa1008750:intron 35.0%
TAATGCACACTAAGTGAAAC+AGG + chr7_1:9329760-9329779 None:intergenic 35.0%
!!! TTACACTTTTTTGCATGCCT+TGG + chr7_1:9329911-9329930 None:intergenic 35.0%
GCCATAGACAAACTTGAGAT+TGG - chr7_1:9326900-9326919 Msa1008750:three_prime_UTR 40.0%
AATCTTCTGCAAGATCTGCA+AGG + chr7_1:9327145-9327164 None:intergenic 40.0%
!! CTTGTTCCTGATTTTCAGGA+AGG - chr7_1:9327194-9327213 Msa1008750:CDS 40.0%
!! TTGTTCTTGGCTTTGATTGG+TGG - chr7_1:9327379-9327398 Msa1008750:CDS 40.0%
!! TGTTCTTGGCTTTGATTGGT+GGG - chr7_1:9327380-9327399 Msa1008750:CDS 40.0%
TGCAGCAAGACATATTGTGA+TGG - chr7_1:9327718-9327737 Msa1008750:CDS 40.0%
! AAGAAGATTCTGGCTGATCT+TGG - chr7_1:9327776-9327795 Msa1008750:CDS 40.0%
GAACATACAAAGTGAGAAGG+AGG - chr7_1:9327817-9327836 Msa1008750:CDS 40.0%
ATACAAAGTGAGAAGGAGGA+GGG - chr7_1:9327821-9327840 Msa1008750:CDS 40.0%
GGAGGATGATATAGATAAGG+AGG - chr7_1:9327862-9327881 Msa1008750:CDS 40.0%
TGATATAGATAAGGAGGACG+AGG - chr7_1:9327868-9327887 Msa1008750:CDS 40.0%
!! GGTGTTATTGAACAACGACT+TGG - chr7_1:9327917-9327936 Msa1008750:CDS 40.0%
!! ACAACGACTTGGTTTGATTC+AGG - chr7_1:9327928-9327947 Msa1008750:CDS 40.0%
GGCTTATAGTGTTCTTCAGA+CGG - chr7_1:9328114-9328133 Msa1008750:CDS 40.0%
GTTCAAAAGGTTGCCTATTC+TGG + chr7_1:9328180-9328199 None:intergenic 40.0%
GAGACATACTCAGGTTCAAA+AGG + chr7_1:9328193-9328212 None:intergenic 40.0%
ATCAATGACATGCTCTTCAG+TGG + chr7_1:9328317-9328336 None:intergenic 40.0%
! TAAGGCATCCCTTCTAACAA+TGG + chr7_1:9328431-9328450 None:intergenic 40.0%
! GAAAATGGAATGGGGTACTT+TGG - chr7_1:9328504-9328523 Msa1008750:CDS 40.0%
GGGTTTATCTTGCAAGTGAA+AGG - chr7_1:9328572-9328591 Msa1008750:CDS 40.0%
! AGTGACCAAATTTTCGGAGA+AGG - chr7_1:9328601-9328620 Msa1008750:CDS 40.0%
TTCGTATCAATTTCTCGGGT+TGG + chr7_1:9328720-9328739 None:intergenic 40.0%
ATTCAGTGCTTCGCTGTAAT+CGG + chr7_1:9328986-9329005 None:intergenic 40.0%
CCAAGACTGAAGCAAATGAT+AGG + chr7_1:9329134-9329153 None:intergenic 40.0%
CCTATCATTTGCTTCAGTCT+TGG - chr7_1:9329131-9329150 Msa1008750:CDS 40.0%
! CCTTTTCAGCCATGTAATGT+AGG + chr7_1:9329227-9329246 None:intergenic 40.0%
CCTACATTACATGGCTGAAA+AGG - chr7_1:9329224-9329243 Msa1008750:five_prime_UTR 40.0%
AGGTTAAAGGGTCTGAACTT+AGG - chr7_1:9329244-9329263 Msa1008750:five_prime_UTR 40.0%
AATGGATCCGAAAACACAAC+TGG - chr7_1:9329283-9329302 Msa1008750:five_prime_UTR 40.0%
TGAAATACGAGAGAGCTAGT+TGG - chr7_1:9329325-9329344 Msa1008750:five_prime_UTR 40.0%
AAGTTACGAAGCTTCTACCT+CGG - chr7_1:9329429-9329448 Msa1008750:five_prime_UTR 40.0%
TTTACAGGATTCAAACGGCT+TGG - chr7_1:9329463-9329482 Msa1008750:five_prime_UTR 40.0%
CTTTGCAATGTTTGTGTCCA+AGG - chr7_1:9329891-9329910 Msa1008750:five_prime_UTR 40.0%
ATAAATCCAAGTAGGCCTTG+AGG + chr7_1:9329956-9329975 None:intergenic 40.0%
CAATGGCTGTTGAGGAATCT+AGG - chr7_1:9327654-9327673 Msa1008750:CDS 45.0%
CATACAAAGTGAGAAGGAGG+AGG - chr7_1:9327820-9327839 Msa1008750:CDS 45.0%
TACAAAGTGAGAAGGAGGAG+GGG - chr7_1:9327822-9327841 Msa1008750:CDS 45.0%
TATAGATAAGGAGGACGAGG+TGG - chr7_1:9327871-9327890 Msa1008750:CDS 45.0%
GCGCATATTGATCGAGAAGT+TGG - chr7_1:9328042-9328061 Msa1008750:CDS 45.0%
TTCTTCAGACGGCTATGACA+CGG - chr7_1:9328125-9328144 Msa1008750:CDS 45.0%
GCAACCTGCTTATCCAGAAT+AGG - chr7_1:9328164-9328183 Msa1008750:CDS 45.0%
GTTGCCTATTCTGGATAAGC+AGG + chr7_1:9328171-9328190 None:intergenic 45.0%
GATCGAAACGAGACATACTC+AGG + chr7_1:9328202-9328221 None:intergenic 45.0%
AGCGAGGAAGATGTTGTTGA+TGG - chr7_1:9328223-9328242 Msa1008750:CDS 45.0%
GCGAGGAAGATGTTGTTGAT+GGG - chr7_1:9328224-9328243 Msa1008750:CDS 45.0%
TTTGCGATACACCTGAGATC+AGG + chr7_1:9328361-9328380 None:intergenic 45.0%
GTTCGCCTTCTCCGAAAATT+TGG + chr7_1:9328609-9328628 None:intergenic 45.0%
!! ATCAATTTCTCGGGTTGGTG+AGG + chr7_1:9328715-9328734 None:intergenic 45.0%
CAATGCTTTGTATTCGGACG+AGG - chr7_1:9328783-9328802 Msa1008750:CDS 45.0%
!! CACGAGGTTCTGAACAGATT+GGG - chr7_1:9328832-9328851 Msa1008750:CDS 45.0%
!! CCAACTAAAGGCGTTGTTGA+CGG + chr7_1:9328910-9328929 None:intergenic 45.0%
TCAACAACGCCTTTAGTTGG+TGG - chr7_1:9328910-9328929 Msa1008750:CDS 45.0%
TGTATCCCTCCACCAACTAA+AGG + chr7_1:9328922-9328941 None:intergenic 45.0%
CTGTTATCATCTTCGGTACC+CGG + chr7_1:9329066-9329085 None:intergenic 45.0%
GAAATCTACCAGGAGATGCT+TGG + chr7_1:9329092-9329111 None:intergenic 45.0%
TCCTGGTAGATTTCCCTCAA+TGG - chr7_1:9329098-9329117 Msa1008750:CDS 45.0%
AGTCTTGGAGAACAATCTCG+AGG - chr7_1:9329146-9329165 Msa1008750:CDS 45.0%
GGATCATATTCGGAGACGAA+TGG - chr7_1:9329265-9329284 Msa1008750:five_prime_UTR 45.0%
TGTAAATATCCTCGAAGCCG+AGG + chr7_1:9329449-9329468 None:intergenic 45.0%
TCGGCTTCGAGGATATTTAC+AGG - chr7_1:9329448-9329467 Msa1008750:five_prime_UTR 45.0%
TTCAGCTTCGCGAAGATTTG+CGG - chr7_1:9329499-9329518 Msa1008750:intron 45.0%
GCACACTAAGTGAAACAGGA+AGG + chr7_1:9329756-9329775 None:intergenic 45.0%
TATATGCCTCAAGGCCTACT+TGG - chr7_1:9329947-9329966 Msa1008750:five_prime_UTR 45.0%
!! TAGATAATAATTAAAAAAAA+TGG + chr7_1:9326964-9326983 None:intergenic 5.0%
AGAAGGAGGAGGGGAAGATA+GGG - chr7_1:9327831-9327850 Msa1008750:CDS 50.0%
GAAGATAGGGAGGGAAAAGG+AGG - chr7_1:9327844-9327863 Msa1008750:CDS 50.0%
CTGAGATCAGGAATCACAGC+TGG + chr7_1:9328349-9328368 None:intergenic 50.0%
CAGCTGTGATTCCTGATCTC+AGG - chr7_1:9328347-9328366 Msa1008750:CDS 50.0%
GCTTTGTATTCGGACGAGGT+TGG - chr7_1:9328787-9328806 Msa1008750:CDS 50.0%
GTGGCATTCAAAGTGAACCG+AGG + chr7_1:9328815-9328834 None:intergenic 50.0%
GGTTCACTTTGAATGCCACG+AGG - chr7_1:9328816-9328835 Msa1008750:CDS 50.0%
CCAATCTGTTCAGAACCTCG+TGG + chr7_1:9328834-9328853 None:intergenic 50.0%
!! CCACGAGGTTCTGAACAGAT+TGG - chr7_1:9328831-9328850 Msa1008750:CDS 50.0%
CCGTCAACAACGCCTTTAGT+TGG - chr7_1:9328907-9328926 Msa1008750:CDS 50.0%
!! ACAACGCCTTTAGTTGGTGG+AGG - chr7_1:9328913-9328932 Msa1008750:CDS 50.0%
!! CAACGCCTTTAGTTGGTGGA+GGG - chr7_1:9328914-9328933 Msa1008750:CDS 50.0%
TGGTGGAGGGATACATCCAT+TGG - chr7_1:9328927-9328946 Msa1008750:CDS 50.0%
CGTGTCAGGTGACGATGAAA+TGG + chr7_1:9329040-9329059 None:intergenic 50.0%
AACAGAAGCCAAGCATCTCC+TGG - chr7_1:9329081-9329100 Msa1008750:CDS 50.0%
GCCATTGAGGGAAATCTACC+AGG + chr7_1:9329102-9329121 None:intergenic 50.0%
GTAGATTTCCCTCAATGGCG+CGG - chr7_1:9329103-9329122 Msa1008750:CDS 50.0%
GATGAAGGAATTCACGCTCC+CGG - chr7_1:9329372-9329391 Msa1008750:five_prime_UTR 50.0%
TCTTCGCGAAGCTGAACATC+TGG + chr7_1:9329495-9329514 None:intergenic 50.0%
GAGAAGGAGGAGGGGAAGAT+AGG - chr7_1:9327830-9327849 Msa1008750:CDS 55.0%
GGGGAAGATAGGGAGGGAAA+AGG - chr7_1:9327841-9327860 Msa1008750:CDS 55.0%
! GAGGAGGAGGAAGAAGGTGT+TGG - chr7_1:9327896-9327915 Msa1008750:CDS 55.0%
TGTCTCGTTTCGATCGAGCG+AGG - chr7_1:9328207-9328226 Msa1008750:CDS 55.0%
! TTCGGACGAGGTTGGTTCCT+CGG - chr7_1:9328795-9328814 Msa1008750:CDS 55.0%
ATCGTCACCTGACACGAGTC+CGG - chr7_1:9329044-9329063 Msa1008750:CDS 55.0%
AGGAATTGCCGCGCCATTGA+GGG + chr7_1:9329114-9329133 None:intergenic 55.0%
TAGGAATTGCCGCGCCATTG+AGG + chr7_1:9329115-9329134 None:intergenic 55.0%
AAGCTTCTACCTCGGCTTCG+AGG - chr7_1:9329437-9329456 Msa1008750:five_prime_UTR 55.0%
AGGAGGAGGGGAAGATAGGG+AGG - chr7_1:9327834-9327853 Msa1008750:CDS 60.0%
GGAGGAGGGGAAGATAGGGA+GGG - chr7_1:9327835-9327854 Msa1008750:CDS 60.0%
TAAGGAGGACGAGGTGGACG+AGG - chr7_1:9327877-9327896 Msa1008750:CDS 60.0%
GTGGACGAGGAGGAGGAAGA+AGG - chr7_1:9327890-9327909 Msa1008750:CDS 60.0%
TCGTCACCTGACACGAGTCC+GGG - chr7_1:9329045-9329064 Msa1008750:CDS 60.0%
TCGGTACCCGGACTCGTGTC+AGG + chr7_1:9329054-9329073 None:intergenic 65.0%
GGAGGACGAGGTGGACGAGG+AGG - chr7_1:9327880-9327899 Msa1008750:CDS 70.0%
GGACGAGGTGGACGAGGAGG+AGG - chr7_1:9327883-9327902 Msa1008750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9326849 9329982 9326849 ID=Msa1008750;Name=Msa1008750
chr7_1 mRNA 9326849 9329982 9326849 ID=Msa1008750-mRNA-1;Parent=Msa1008750;Name=Msa1008750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=681|1|1|1|1|1|2|293|677
chr7_1 exon 9326849 9329489 9326849 ID=Msa1008750-mRNA-1:exon:2654;Parent=Msa1008750-mRNA-1
chr7_1 exon 9329616 9329982 9329616 ID=Msa1008750-mRNA-1:exon:2653;Parent=Msa1008750-mRNA-1
chr7_1 five_prime_UTR 9329616 9329982 9329616 ID=Msa1008750-mRNA-1:five_prime_utr;Parent=Msa1008750-mRNA-1
chr7_1 five_prime_UTR 9329176 9329489 9329176 ID=Msa1008750-mRNA-1:five_prime_utr;Parent=Msa1008750-mRNA-1
chr7_1 CDS 9327142 9329175 9327142 ID=Msa1008750-mRNA-1:cds;Parent=Msa1008750-mRNA-1
chr7_1 three_prime_UTR 9326849 9327141 9326849 ID=Msa1008750-mRNA-1:three_prime_utr;Parent=Msa1008750-mRNA-1
Gene Sequence

>Msa1008750

ATGGCTGTTGAGGAATCTAGGCAAGTGATTCCTGAGTTAGAAAGAGAAGAGAATTTAATTGCTGCAGCAAGACATATTGTGATGGCTTTAGGGTCAAAGAACAGTCTTACAAGTGATGAAAAGAAGATTCTGGCTGATCTTGGATCAAAGTTGTCTTCCATGAACATACAAAGTGAGAAGGAGGAGGGGAAGATAGGGAGGGAAAAGGAGGATGATATAGATAAGGAGGACGAGGTGGACGAGGAGGAGGAAGAAGGTGTTGGTGTTATTGAACAACGACTTGGTTTGATTCAGGAGAAAATAATGAAATGGGAGGAAGATCAATCGATGATTTGGGATTTGGGACCTGAAGAAACGTCTGAGTATTTGAATGCAGCTAATGATGTGCGCATATTGATCGAGAAGTTGGAAGGTATGCATTTGAATAAAGAAGATCAAGAGTATAAGTTTTTGCAGAGGGCTTATAGTGTTCTTCAGACGGCTATGACACGGCTTGAAGAAGAGTTTAGCAACCTGCTTATCCAGAATAGGCAACCTTTTGAACCTGAGTATGTCTCGTTTCGATCGAGCGAGGAAGATGTTGTTGATGGGAATTCTTTTGTCTCTTTTGGTGATGATTCATTTGAGGAATCTCTTCGAAGAGATAGTGTCAGTCGAGCCACTGAAGAGCATGTCATTGATTTAGTTCATCCAGCTGTGATTCCTGATCTCAGGTGTATCGCAAACTTGCTTTTTGCTTCAAATTATGCTCAAGAATGTTCACAAGCTTATACCATTGTTAGAAGGGATGCCTTAGATGAGTGTTTGTTCATTCTTGAAATGGAAAGGCTAAGTATTGAAGATGTCTTGAAAATGGAATGGGGTACTTTGGTTTCAAAGATCAAAAGATGGATTTGGGCTTTGAAAATCTTTGTTAGGGTTTATCTTGCAAGTGAAAGGTGGCTTAGTGACCAAATTTTCGGAGAAGGCGAACCTGTTAGTCAAGCTTGTTTTGTCGATGCATCAAAAGCTTCAATTTTGCAGCTTCTGAATTTTGGTGAAGCTATGTCTATTGGTCCTCACCAACCCGAGAAATTGATACGAATTCTCGACATGTATGAAGTTCTTGCAGATCTTATGCCTGACATCAATGCTTTGTATTCGGACGAGGTTGGTTCCTCGGTTCACTTTGAATGCCACGAGGTTCTGAACAGATTGGGAGATTGTGTAAAGAAAACATTTCTTGAATTCAAAAATGCTGTTGATTTGAATCCGTCAACAACGCCTTTAGTTGGTGGAGGGATACATCCATTGGCGAGATATGTTATGAATTATCTTCGGACTCTTACCGATTACAGCGAAGCACTGAATCATCTTCTGAAAGATCAAGAAGAAGAGGATTCCATTTCATCGTCACCTGACACGAGTCCGGGTACCGAAGATGATAACAGAAGCCAAGCATCTCCTGGTAGATTTCCCTCAATGGCGCGGCAATTCCTATCATTTGCTTCAGTCTTGGAGAACAATCTCGAGGAGAAATCGAAGTTATACAAAGAGACTTCATTGCAGCACTTGTTCTTAATGAACAACCTACATTACATGGCTGAAAAGGTTAAAGGGTCTGAACTTAGGATCATATTCGGAGACGAATGGATCCGAAAACACAACTGGAAGTTTCAGCAGCACGCGATGAAATACGAGAGAGCTAGTTGGAGTTCCATTCTCAACTTTCTTAAGGATGAAGGAATTCACGCTCCCGGTTCAAATTCTGTCTCAAAAACTCTTCTAAAAGAGAAGTTACGAAGCTTCTACCTCGGCTTCGAGGATATTTACAGGATTCAAACGGCTTGGTCGATTCCAGATGTTCAGCTTCGCGAAGATTTGCGGATTTCTATATCGGTTAAAGTGATTCAAGCTTATAGGACATTTGTTGGAAGGAATAATAGTCATGTGAGTGATAAACATATTAGATACACTGCTGATGATTTAGAAAATTATCTTTTGGATTTCTTTGAAGGTTCTCAAAAGTTGTTGCAAAATCCTATTAGGAGATGA

Protein sequence

>Msa1008750

MAVEESRQVIPELEREENLIAAARHIVMALGSKNSLTSDEKKILADLGSKLSSMNIQSEKEEGKIGREKEDDIDKEDEVDEEEEEGVGVIEQRLGLIQEKIMKWEEDQSMIWDLGPEETSEYLNAANDVRILIEKLEGMHLNKEDQEYKFLQRAYSVLQTAMTRLEEEFSNLLIQNRQPFEPEYVSFRSSEEDVVDGNSFVSFGDDSFEESLRRDSVSRATEEHVIDLVHPAVIPDLRCIANLLFASNYAQECSQAYTIVRRDALDECLFILEMERLSIEDVLKMEWGTLVSKIKRWIWALKIFVRVYLASERWLSDQIFGEGEPVSQACFVDASKASILQLLNFGEAMSIGPHQPEKLIRILDMYEVLADLMPDINALYSDEVGSSVHFECHEVLNRLGDCVKKTFLEFKNAVDLNPSTTPLVGGGIHPLARYVMNYLRTLTDYSEALNHLLKDQEEEDSISSSPDTSPGTEDDNRSQASPGRFPSMARQFLSFASVLENNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRIIFGDEWIRKHNWKFQQHAMKYERASWSSILNFLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTAWSIPDVQLREDLRISISVKVIQAYRTFVGRNNSHVSDKHIRYTADDLENYLLDFFEGSQKLLQNPIRR*