AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0014570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014570 MtrunA17_Chr1g0164981 97.373 609 15 1 1 609 1 608 0.0 1222
Msa0014570 MtrunA17_Chr5g0444881 48.387 589 277 6 16 603 15 577 0.0 528
Msa0014570 MtrunA17_Chr6g0476051 51.252 519 236 7 15 530 15 519 1.45e-164 486
Msa0014570 MtrunA17_Chr1g0188201 46.140 544 267 6 15 551 14 538 1.21e-150 451
Msa0014570 MtrunA17_Chr8g0354131 40.878 592 301 6 15 596 13 565 4.06e-149 442
Msa0014570 MtrunA17_Chr3g0122591 40.177 565 305 10 1 552 1 545 3.75e-133 402
Msa0014570 MtrunA17_Chr7g0245851 42.801 507 276 3 12 518 364 856 3.67e-119 378
Msa0014570 MtrunA17_Chr8g0345241 35.795 528 293 9 2 516 1 495 1.59e-96 304
Msa0014570 MtrunA17_Chr4g0039561 53.846 52 24 0 27 78 146 197 2.02e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014570 AT2G01910.1 67.099 617 184 8 1 608 1 607 0.0 796
Msa0014570 AT1G14690.1 65.309 614 191 9 1 606 1 600 0.0 793
Msa0014570 AT1G14690.2 65.309 614 191 9 1 606 1 600 0.0 793
Msa0014570 AT2G01910.2 68.056 576 166 7 41 608 1 566 0.0 754
Msa0014570 AT5G55230.3 46.734 597 288 9 16 606 15 587 4.16e-172 502
Msa0014570 AT5G55230.1 46.734 597 288 9 16 606 15 587 4.16e-172 502
Msa0014570 AT4G26760.1 46.115 592 282 9 16 603 15 573 1.56e-170 498
Msa0014570 AT5G55230.2 44.728 626 287 10 16 606 15 616 4.78e-166 488
Msa0014570 AT2G38720.1 43.031 574 292 6 20 593 12 550 4.43e-142 424
Msa0014570 AT5G51600.1 44.308 571 292 9 11 578 10 557 8.13e-137 416
Msa0014570 AT3G60840.1 42.095 506 279 4 13 517 12 504 1.16e-131 401
Msa0014570 AT1G27920.1 38.393 560 312 8 1 534 1 553 1.20e-127 387
Msa0014570 AT5G62250.2 40.246 569 303 8 12 567 5 549 1.89e-111 345
Msa0014570 AT5G62250.1 40.246 569 303 8 12 567 5 549 1.89e-111 345
Msa0014570 AT1G27920.2 38.795 415 244 5 1 412 1 408 4.31e-94 295

Find 159 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGCAATACCTGGAATTT+TGG 0.152671 1_1:+23134019 None:intergenic
TTTCTTGTTTAACTCTTAAA+AGG 0.152871 1_1:-23136978 Msa0014570:five_prime_UTR
GAGAATGTTTAGATGTTTAT+AGG 0.158902 1_1:-23135897 Msa0014570:CDS
CATTCTCTCTGTGGTGTTCT+TGG 0.163659 1_1:-23135098 Msa0014570:CDS
AACTTAACTTCCTACAATTA+TGG 0.195411 1_1:+23132488 None:intergenic
TAAGAAGAGGTTGGAGTTAG+AGG 0.227815 1_1:-23134529 Msa0014570:CDS
GTAGATCTTGCATCTTCTTT+TGG 0.235244 1_1:+23133277 None:intergenic
GTGAGTGTAGAGTGTGAAAA+AGG 0.242074 1_1:-23136904 Msa0014570:five_prime_UTR
AATCAAAAGGAAGCCATATA+TGG 0.244001 1_1:-23133249 Msa0014570:CDS
GGTACGTTTGGTGGAATTAT+TGG 0.281304 1_1:-23133759 Msa0014570:CDS
CTCTTCTTCTCTCTGTTGTC+TGG 0.295010 1_1:+23133721 None:intergenic
AAGTGCAAGTAGTGCTTATA+TGG 0.309402 1_1:+23136830 None:intergenic
TCAGGGGCAGTACTTGTATC+AGG 0.319336 1_1:+23134480 None:intergenic
TTGCTTGTGAAGAGGAAAAT+TGG 0.319572 1_1:-23134221 Msa0014570:CDS
AAGGTGAACGCTTTGGTTAA+AGG 0.326363 1_1:+23137081 None:intergenic
ATTCGAACTTTGGAATTTGA+TGG 0.329583 1_1:-23134803 Msa0014570:CDS
AGGTGAACGCTTTGGTTAAA+GGG 0.357433 1_1:+23137082 None:intergenic
ACTAGGTTTAGACCCATATA+TGG 0.358084 1_1:+23133236 None:intergenic
CAGCAAATATGGAACGATAT+TGG 0.368433 1_1:-23135964 Msa0014570:CDS
TGAGGACAGGAAATTAGCTT+TGG 0.374600 1_1:-23132685 Msa0014570:three_prime_UTR
TGACTATATGTGTGTGTTGT+GGG 0.377016 1_1:-23132609 Msa0014570:three_prime_UTR
TCTCTGTGGTGTTCTTGGAT+TGG 0.377879 1_1:-23135093 Msa0014570:CDS
TCGCTAACCTATTCGAACTT+TGG 0.382162 1_1:-23134813 Msa0014570:CDS
ATTAATGCACTAGCTTTCTC+AGG 0.388767 1_1:+23134462 None:intergenic
GGCAAAGTATTGTATTGAAA+TGG 0.388997 1_1:+23137471 None:intergenic
TCAAATTCCAAAGTTCGAAT+AGG 0.392179 1_1:+23134806 None:intergenic
TGTTGCAATCTCAGCTTCCT+TGG 0.397291 1_1:+23135819 None:intergenic
ACCTGAGTCCCATGCAAACT+TGG 0.397911 1_1:+23135041 None:intergenic
TGTTGAAAGAGCGCCTCTTT+CGG 0.406114 1_1:+23134708 None:intergenic
TATGACATTGTATCTTCCTT+AGG 0.409479 1_1:+23132985 None:intergenic
TAATCTGAAACGTGCAGAAC+GGG 0.409668 1_1:-23134057 Msa0014570:CDS
TTAAACTTGGGGAGGGGACT+CGG 0.411081 1_1:+23132945 None:intergenic
TACTGCACCTCTCAACTTTG+TGG 0.419511 1_1:-23133013 Msa0014570:CDS
TTTAGGAGAGAGAAATGAAA+AGG 0.421383 1_1:+23137202 None:intergenic
AAGAAGAGTTAAGAAGGAAC+AGG 0.422329 1_1:+23137167 None:intergenic
TTGGGGAGGGGACTCGGGTT+CGG 0.422995 1_1:+23132951 None:intergenic
GGTGTTCTTGGATTGGATTT+CGG 0.424164 1_1:-23135086 Msa0014570:CDS
CTCAGCTTCCTTGGCTGCAA+GGG 0.426652 1_1:+23135828 None:intergenic
TTCTTCAATTCTTCGACCAA+TGG 0.430753 1_1:+23135479 None:intergenic
TTTAGATGTTTATAGGAGAA+AGG 0.430994 1_1:-23135890 Msa0014570:CDS
GTAACTATAACCAAAATTCC+AGG 0.440102 1_1:-23134029 Msa0014570:intron
TTGCCATGATTATTATTTGT+TGG 0.442236 1_1:+23137258 None:intergenic
AGATCTAAAGGTGAACGCTT+TGG 0.449667 1_1:+23137074 None:intergenic
CACACACCGCGCTCCTACTC+TGG 0.450439 1_1:-23133075 Msa0014570:CDS
TCGTGGTCTTCAAAAGGAAA+AGG 0.451152 1_1:-23135282 Msa0014570:intron
TAAACTTGGGGAGGGGACTC+GGG 0.452043 1_1:+23132946 None:intergenic
GATAACACTCGGTACAGTGC+TGG 0.455300 1_1:-23134095 Msa0014570:CDS
GAAATTTATATAGATTAAGA+TGG 0.457640 1_1:-23135546 Msa0014570:intron
CTTATATGGATACTAGTGAT+AGG 0.457710 1_1:+23136844 None:intergenic
GAGGACAGGAAATTAGCTTT+GGG 0.458226 1_1:-23132684 Msa0014570:three_prime_UTR
GGACAAAGACCGTATGTTGA+TGG 0.458837 1_1:-23135929 Msa0014570:CDS
GATTATTATTTGTTGGAGCT+TGG 0.461362 1_1:+23137265 None:intergenic
GATGTACATCATCTACCGTT+TGG 0.462046 1_1:+23135063 None:intergenic
GCTAGTGCATTAATAGATTC+CGG 0.471570 1_1:-23134453 Msa0014570:intron
ATCAAAAGGAAGCCATATAT+GGG 0.473492 1_1:-23133248 Msa0014570:CDS
ATGTCATATGTAGGTACGTT+TGG 0.473501 1_1:-23133771 Msa0014570:intron
TTGACTATATGTGTGTGTTG+TGG 0.475607 1_1:-23132610 Msa0014570:three_prime_UTR
GTAGAAGAGAAGTAACAGAT+AGG 0.475843 1_1:-23134260 Msa0014570:CDS
GCTTTGGGAAGTGTTGATAC+AGG 0.476414 1_1:-23132669 Msa0014570:three_prime_UTR
TCCTACTCTGGTCGTCATAA+CGG 0.476718 1_1:-23133063 Msa0014570:CDS
CTTGGTGTATAATGTATAGT+TGG 0.479394 1_1:+23137283 None:intergenic
TTCTTTGCTCAAAGAACTTG+AGG 0.479736 1_1:-23136809 Msa0014570:intron
ACTATTCACAAGGTTTGCTC+TGG 0.480492 1_1:+23132772 None:intergenic
AAGATAAGCGGTGAGATTTG+TGG 0.481668 1_1:-23135404 Msa0014570:CDS
GCTCCAACAAATAATAATCA+TGG 0.482616 1_1:-23137261 Msa0014570:five_prime_UTR
AACAACGGTTATCGTGCAAA+TGG 0.483810 1_1:-23133183 Msa0014570:CDS
AGATCTACTCCTAAATCAAA+AGG 0.486123 1_1:-23133262 Msa0014570:CDS
TCATCAATCCCTTGCAGCCA+AGG 0.486920 1_1:-23135836 Msa0014570:CDS
GAATCAGAAATCACCGAAAG+AGG 0.488175 1_1:-23134721 Msa0014570:CDS
TTCTTGTTTAACTCTTAAAA+GGG 0.493783 1_1:-23136977 Msa0014570:five_prime_UTR
AGACCGTATGTTGATGGAGC+TGG 0.494507 1_1:-23135923 Msa0014570:CDS
ACAAACATTAACAGATCTAA+AGG 0.494720 1_1:+23137062 None:intergenic
TAAGAGAAGAAGAGTTAAGA+AGG 0.495250 1_1:+23137161 None:intergenic
AATGGCAACAGCGTCGGCTA+TGG 0.499985 1_1:-23133165 Msa0014570:CDS
TCCAAGTTTGCATGGGACTC+AGG 0.500735 1_1:-23135042 Msa0014570:CDS
GCATCTTCGTGGTCTTCAAA+AGG 0.503443 1_1:-23135288 Msa0014570:CDS
CAACTTTGTGGCTATACCTA+AGG 0.504876 1_1:-23133001 Msa0014570:CDS
GAATATCAAACGCATCTTCG+TGG 0.509015 1_1:-23135299 Msa0014570:CDS
CAATGTAGGAGCAGGTAAAG+AGG 0.523174 1_1:+23137450 None:intergenic
CTGTGAATAATGTTGGCCAT+TGG 0.523179 1_1:-23136871 Msa0014570:exon
AACAGCGTCGGCTATGGCAA+TGG 0.523571 1_1:-23133159 Msa0014570:CDS
ATTGAGTTCCGTCGAGGTGT+AGG 0.524668 1_1:+23133120 None:intergenic
TTTGCAGGCTTCGGCAGAAG+TGG 0.524852 1_1:-23134598 Msa0014570:intron
TCTCAGCTTCCTTGGCTGCA+AGG 0.526154 1_1:+23135827 None:intergenic
ACTCGTATTTAAGAAGAGGT+TGG 0.527106 1_1:-23134538 Msa0014570:CDS
TTCAACAGAGATAATAGAGA+AGG 0.529481 1_1:-23134692 Msa0014570:intron
AAGAACTCGTATTTAAGAAG+AGG 0.530652 1_1:-23134542 Msa0014570:CDS
AAGGAAATCTAGAGTACAGA+AGG 0.531486 1_1:-23134946 Msa0014570:intron
GGTGATGTGGTGATTAGAGC+TGG 0.532649 1_1:-23132308 Msa0014570:three_prime_UTR
GATGTACATCCAAGTTTGCA+TGG 0.533457 1_1:-23135050 Msa0014570:CDS
AATGTGTAAAGAGGCAATGT+AGG 0.533685 1_1:+23137436 None:intergenic
ATAGATTCTGTGAATAATGT+TGG 0.534076 1_1:-23136878 Msa0014570:exon
AGTGGGATAGCTGACATTTG+AGG 0.535818 1_1:-23132703 Msa0014570:three_prime_UTR
AAGAAGAGAAGAGACGACAG+AGG 0.537947 1_1:-23133706 Msa0014570:CDS
AAAATTATGTGTTGGTGATG+TGG 0.539314 1_1:-23132321 Msa0014570:three_prime_UTR
ACACTCACATCATCATTGAC+AGG 0.541461 1_1:+23135374 None:intergenic
GCTTGCATCTGTCACACCAT+TGG 0.541601 1_1:-23135495 Msa0014570:CDS
GATGTGAGTGTCAGCAGCAC+AGG 0.543972 1_1:-23135362 Msa0014570:CDS
TAAAGAGGCAATGTAGGAGC+AGG 0.546206 1_1:+23137442 None:intergenic
GATACAGGTAGGGACAGTTA+AGG 0.549200 1_1:-23132654 Msa0014570:three_prime_UTR
CATTGAATCACAAATAGTAA+AGG 0.552349 1_1:-23134301 Msa0014570:CDS
TCATATGTAGGTACGTTTGG+TGG 0.552696 1_1:-23133768 Msa0014570:intron
TATAAGCAAAACACTAGCAT+GGG 0.553893 1_1:-23133915 Msa0014570:CDS
TGGATTGGATTTCGGCCAAA+CGG 0.556812 1_1:-23135078 Msa0014570:CDS
CAACACTAATAGCTGCACTC+GGG 0.560451 1_1:-23135801 Msa0014570:CDS
AAAGAGATCTGCATCGCTGA+AGG 0.560647 1_1:-23135522 Msa0014570:CDS
ATAACACTCGGTACAGTGCT+GGG 0.566360 1_1:-23134094 Msa0014570:CDS
GCCAACACAACACTGACACT+TGG 0.567984 1_1:-23132376 Msa0014570:three_prime_UTR
TTAATGCACTAGCTTTCTCA+GGG 0.568025 1_1:+23134463 None:intergenic
AGAAGAAAGGCTGAAACAGT+TGG 0.570250 1_1:-23135450 Msa0014570:CDS
TTATAAGCAAAACACTAGCA+TGG 0.571122 1_1:-23133916 Msa0014570:CDS
TTCTCAAGTTAAAAGCAGAA+AGG 0.571810 1_1:-23134965 Msa0014570:CDS
GTCGGCTATGGCAATGGCAA+TGG 0.575373 1_1:-23133153 Msa0014570:CDS
GATAGCTGACATTTGAGGAC+AGG 0.575977 1_1:-23132698 Msa0014570:three_prime_UTR
TTTGAACTTAAACTTGGGGA+GGG 0.579865 1_1:+23132938 None:intergenic
CGTGCAAATGGCAACAGCGT+CGG 0.582083 1_1:-23133171 Msa0014570:CDS
GGGAAGTGTTGATACAGGTA+GGG 0.584185 1_1:-23132664 Msa0014570:three_prime_UTR
CAAGCAACATACTATTCACA+AGG 0.584516 1_1:+23132762 None:intergenic
GGAACATGATATGAGCTCTC+CGG 0.585065 1_1:-23135779 Msa0014570:intron
GAGTTCCGTCGAGGTGTAGG+AGG 0.590544 1_1:+23133123 None:intergenic
TCACATCATCATTGACAGGA+TGG 0.591634 1_1:+23135378 None:intergenic
ACCAAGTGTCAGTGTTGTGT+TGG 0.593241 1_1:+23132375 None:intergenic
GCAACACTAATAGCTGCACT+CGG 0.600020 1_1:-23135802 Msa0014570:CDS
ATGAAAGCGTGCTTTGATGT+TGG 0.600513 1_1:+23135855 None:intergenic
TCTCCAGCTCCATCAACATA+CGG 0.601579 1_1:+23135920 None:intergenic
ATGTATGTGTATTTATAACA+CGG 0.602805 1_1:-23132449 Msa0014570:three_prime_UTR
ATTAGCAATAGCACATTGGA+AGG 0.604701 1_1:-23135002 Msa0014570:CDS
TGGGAAGTGTTGATACAGGT+AGG 0.605766 1_1:-23132665 Msa0014570:three_prime_UTR
AATGAGGTGCATTCTCTCTG+TGG 0.607233 1_1:-23135107 Msa0014570:CDS
TTGAACTTAAACTTGGGGAG+GGG 0.607474 1_1:+23132939 None:intergenic
ACTCGGTACAGTGCTGGGCG+AGG 0.608408 1_1:-23134089 Msa0014570:CDS
TAACAGATAGGATTGATAAG+TGG 0.615452 1_1:-23134248 Msa0014570:CDS
ATGTACATCCAAGTTTGCAT+GGG 0.615491 1_1:-23135049 Msa0014570:CDS
ATTGCAAGACTTTCTGAAGT+CGG 0.617924 1_1:+23135135 None:intergenic
ATGTTAGCTAATAGTTCACA+AGG 0.618604 1_1:+23134321 None:intergenic
CGATATTGGAGAGAGCGAGA+AGG 0.619852 1_1:-23135950 Msa0014570:CDS
GTGAGTGTCAGCAGCACAGG+TGG 0.627088 1_1:-23135359 Msa0014570:CDS
TAATATTAGCAATAGCACAT+TGG 0.628365 1_1:-23135006 Msa0014570:CDS
CTATGCCTCCTACACCTCGA+CGG 0.629673 1_1:-23133128 Msa0014570:CDS
AGCTTTAGAAAGACAAACAA+CGG 0.630355 1_1:-23133198 Msa0014570:CDS
AGAAGAGAAGAGACGACAGA+GGG 0.631005 1_1:-23133705 Msa0014570:intron
ACATGGACAGTGAGACTGAG+TGG 0.635850 1_1:-23132721 Msa0014570:three_prime_UTR
TTAATCTGAAACGTGCAGAA+CGG 0.636397 1_1:-23134058 Msa0014570:CDS
AGTCTTGCAATGTGTGAATG+AGG 0.639710 1_1:-23135123 Msa0014570:CDS
AACACTAATAGCTGCACTCG+GGG 0.641813 1_1:-23135800 Msa0014570:CDS
AAGTTTGCATGGGACTCAGG+TGG 0.643834 1_1:-23135039 Msa0014570:CDS
GTGGCTGTTTGCTTGTGAAG+AGG 0.648627 1_1:-23134229 Msa0014570:CDS
TTATAGGAGAAAGGTTGATG+AGG 0.650244 1_1:-23135881 Msa0014570:CDS
CATGGACAGTGAGACTGAGT+GGG 0.651814 1_1:-23132720 Msa0014570:three_prime_UTR
ACTCAAATAGAAAAGATAAG+CGG 0.652373 1_1:-23135416 Msa0014570:CDS
ACTAGTGATAGGACTTCCAA+TGG 0.653569 1_1:+23136855 None:intergenic
TCCGTTATGACGACCAGAGT+AGG 0.653657 1_1:+23133062 None:intergenic
GGGAATTTCAGGATAACACT+CGG 0.667546 1_1:-23134106 Msa0014570:intron
GGTATAGCCACAAAGTTGAG+AGG 0.671097 1_1:+23133006 None:intergenic
AATAAGCTGAGATATATACA+TGG 0.679152 1_1:-23132738 Msa0014570:three_prime_UTR
CCGCTCATTGAGTTCCGTCG+AGG 0.692714 1_1:+23133114 None:intergenic
TGACGACCAGAGTAGGAGCG+CGG 0.732672 1_1:+23133069 None:intergenic
CCTCGACGGAACTCAATGAG+CGG 0.735513 1_1:-23133114 Msa0014570:CDS
TAATGCACTAGCTTTCTCAG+GGG 0.766836 1_1:+23134464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGAAAAAAGAAAA+TGG + chr1_1:23132538-23132557 None:intergenic 10.0%
!!! AAAAGTACAATTAAAATATT+AGG + chr1_1:23134993-23135012 None:intergenic 10.0%
!! TATATTTAACAAATGAAAAT+TGG + chr1_1:23136963-23136982 None:intergenic 10.0%
!!! TTTTTTAAACAAAGAAAAAA+TGG + chr1_1:23137513-23137532 None:intergenic 10.0%
!!! AAAAGATAATGGTATTTTTA+GGG + chr1_1:23132484-23132503 None:intergenic 15.0%
!!! AAAAAGATAATGGTATTTTT+AGG + chr1_1:23132485-23132504 None:intergenic 15.0%
!!! TTTTTTTTTTCAAAATGATG+AGG - chr1_1:23133114-23133133 Msa0014570:CDS 15.0%
!! AAAAAAGCAAATCAATAATA+TGG + chr1_1:23133754-23133773 None:intergenic 15.0%
!! GAAATTTATATAGATTAAGA+TGG - chr1_1:23134304-23134323 Msa0014570:CDS 15.0%
!! ATTATAACAAATAATAAGAC+TGG + chr1_1:23134956-23134975 None:intergenic 15.0%
!! ATTAACAATAGTAATTAAGT+TGG + chr1_1:23136518-23136537 None:intergenic 15.0%
!! TTGTTTAAAAAATTATGTGT+TGG - chr1_1:23137521-23137540 Msa0014570:five_prime_UTR 15.0%
!! AAAGAAAAAAGAAAATGGAA+GGG + chr1_1:23132533-23132552 None:intergenic 20.0%
!! AAAAGAAAAAAGAAAATGGA+AGG + chr1_1:23132534-23132553 None:intergenic 20.0%
!!! TTTGTTTTGTTTCAAAACAA+TGG - chr1_1:23132806-23132825 Msa0014570:three_prime_UTR 20.0%
!!! TTTCTTGTTTAACTCTTAAA+AGG - chr1_1:23132872-23132891 Msa0014570:intron 20.0%
!!! TTCTTGTTTAACTCTTAAAA+GGG - chr1_1:23132873-23132892 Msa0014570:intron 20.0%
!!! TGTAGGTTATTTTATTGTAA+GGG - chr1_1:23133361-23133380 Msa0014570:intron 20.0%
!!! TTTTATTGTAAATTTTCACG+TGG - chr1_1:23133478-23133497 Msa0014570:intron 20.0%
!! AATTGAAAATTTCACCATAT+TGG - chr1_1:23133529-23133548 Msa0014570:intron 20.0%
!!! ATTTGTTAACAAAACCAATA+TGG + chr1_1:23133546-23133565 None:intergenic 20.0%
!!! TTGGTTTTGTTAACAAATTT+TGG - chr1_1:23133548-23133567 Msa0014570:intron 20.0%
!!! ACTTCAATTTTTTTTACCTA+TGG - chr1_1:23133841-23133860 Msa0014570:intron 20.0%
!!! TAAAAGATCAATTTTATGCA+TGG - chr1_1:23134127-23134146 Msa0014570:intron 20.0%
!!! TTGATGTTTTAATATACTTG+AGG - chr1_1:23134260-23134279 Msa0014570:CDS 20.0%
!! AAACATGGAAAATATATGAA+AGG + chr1_1:23135219-23135238 None:intergenic 20.0%
!! AAATGCTTATAGGAAAATAT+GGG + chr1_1:23136187-23136206 None:intergenic 20.0%
!! GTAATAAAATATACATAAGC+AGG + chr1_1:23136280-23136299 None:intergenic 20.0%
!!! AAATAAATTAAGGGTACAAA+AGG + chr1_1:23136393-23136412 None:intergenic 20.0%
!! TTACACAGGAAATAAATTAA+GGG + chr1_1:23136402-23136421 None:intergenic 20.0%
!! TTTACACAGGAAATAAATTA+AGG + chr1_1:23136403-23136422 None:intergenic 20.0%
!! AATTTATTTCCTGTGTAAAT+TGG - chr1_1:23136404-23136423 Msa0014570:intron 20.0%
!! ATATAGAAGTAATTATGCAT+TGG - chr1_1:23136491-23136510 Msa0014570:intron 20.0%
!! TAAGTTCAAAAAACCAAAAA+TGG - chr1_1:23136925-23136944 Msa0014570:five_prime_UTR 20.0%
!! TATATAGTTCTTTAGTCAAA+AGG - chr1_1:23136981-23137000 Msa0014570:five_prime_UTR 20.0%
!! ATATAGTTCTTTAGTCAAAA+GGG - chr1_1:23136982-23137001 Msa0014570:five_prime_UTR 20.0%
!!! TTATTTTGATCCATAATTGT+AGG - chr1_1:23137352-23137371 Msa0014570:five_prime_UTR 20.0%
!! ATGTATGTGTATTTATAACA+CGG - chr1_1:23137401-23137420 Msa0014570:five_prime_UTR 20.0%
!!! ATAATGGTATTTTTAGGGTT+TGG + chr1_1:23132479-23132498 None:intergenic 25.0%
! AGATGCAAAGAAAAAGATAA+TGG + chr1_1:23132495-23132514 None:intergenic 25.0%
! TTGCCATGATTATTATTTGT+TGG + chr1_1:23132595-23132614 None:intergenic 25.0%
!!! ACAGGATTTGTTGTTTTTTT+AGG + chr1_1:23132668-23132687 None:intergenic 25.0%
! TTTCAGAAAAAGAAAGTAAC+AGG + chr1_1:23132721-23132740 None:intergenic 25.0%
! ACAAACATTAACAGATCTAA+AGG + chr1_1:23132791-23132810 None:intergenic 25.0%
! ATAGATTCTGTGAATAATGT+TGG - chr1_1:23132972-23132991 Msa0014570:CDS 25.0%
!! TTTTCAAAATGATGAGGTTT+TGG - chr1_1:23133120-23133139 Msa0014570:CDS 25.0%
!!! TTTAAAAGAGAAAGCACTTA+TGG - chr1_1:23133326-23133345 Msa0014570:intron 25.0%
!!! CTGTAGGTTATTTTATTGTA+AGG - chr1_1:23133360-23133379 Msa0014570:intron 25.0%
!! TATTTTATTGTAAGGGAGAA+AGG - chr1_1:23133368-23133387 Msa0014570:intron 25.0%
!! ATTTTATTGTAAGGGAGAAA+GGG - chr1_1:23133369-23133388 Msa0014570:intron 25.0%
!!! AAAAATGACTTTTTCAACTC+AGG + chr1_1:23133423-23133442 None:intergenic 25.0%
! AGTTACCAATTCAGTTAATA+TGG - chr1_1:23133572-23133591 Msa0014570:intron 25.0%
! GTTACCAATTCAGTTAATAT+GGG - chr1_1:23133573-23133592 Msa0014570:intron 25.0%
! AAATCCCATATTAACTGAAT+TGG + chr1_1:23133580-23133599 None:intergenic 25.0%
! ATGGTAAAGAACTTTAACAA+TGG + chr1_1:23133735-23133754 None:intergenic 25.0%
! GAAAATTCATGATAAAGTGA+TGG - chr1_1:23133791-23133810 Msa0014570:intron 25.0%
! AAATAAGATTTGTCAACCAT+AGG + chr1_1:23133860-23133879 None:intergenic 25.0%
! GAGAATGTTTAGATGTTTAT+AGG - chr1_1:23133953-23133972 Msa0014570:intron 25.0%
! TTTAGATGTTTATAGGAGAA+AGG - chr1_1:23133960-23133979 Msa0014570:intron 25.0%
! CAAGTCATTTATGTATTTAC+CGG + chr1_1:23134093-23134112 None:intergenic 25.0%
! CAAAATGAGCAAAATTATAG+AGG + chr1_1:23134173-23134192 None:intergenic 25.0%
! AAAACATCAAAAAGCTTTCA+TGG + chr1_1:23134250-23134269 None:intergenic 25.0%
! TGAAGAAGAAAAAAGAAGAA+AGG - chr1_1:23134387-23134406 Msa0014570:intron 25.0%
! ACTCAAATAGAAAAGATAAG+CGG - chr1_1:23134434-23134453 Msa0014570:intron 25.0%
! TAATATTAGCAATAGCACAT+TGG - chr1_1:23134844-23134863 Msa0014570:intron 25.0%
! TAAAATATTAGGCTAAAGAG+AGG + chr1_1:23134982-23135001 None:intergenic 25.0%
!!! CTTTTTAAAAATGCAGTTGA+AGG - chr1_1:23135008-23135027 Msa0014570:CDS 25.0%
! ATGAAAGGAAAAAATGATGA+TGG + chr1_1:23135204-23135223 None:intergenic 25.0%
! CATTGAATCACAAATAGTAA+AGG - chr1_1:23135549-23135568 Msa0014570:intron 25.0%
!!! AAGACTTGTTTTCTATATGA+TGG - chr1_1:23135969-23135988 Msa0014570:intron 25.0%
!!! AGACTTGTTTTCTATATGAT+GGG - chr1_1:23135970-23135989 Msa0014570:intron 25.0%
! CAAATGCTTATAGGAAAATA+TGG + chr1_1:23136188-23136207 None:intergenic 25.0%
! AAAGAACAAAGATCAATTTG+AGG + chr1_1:23136219-23136238 None:intergenic 25.0%
! TGTTATAAACTACACTTACT+AGG + chr1_1:23136252-23136271 None:intergenic 25.0%
!!! TGTGACTTTTTCTTACAAAT+AGG + chr1_1:23136336-23136355 None:intergenic 25.0%
!!! GTGTAGAACATTTAATTTGA+TGG - chr1_1:23136426-23136445 Msa0014570:intron 25.0%
! TATTGTTAATAATCCACTTC+TGG - chr1_1:23136528-23136547 Msa0014570:intron 25.0%
!!! CTAAAGCTGTTAGTTTTTTT+TGG + chr1_1:23136640-23136659 None:intergenic 25.0%
!!! GTTTTTTGAACTTAAACTTG+GGG + chr1_1:23136919-23136938 None:intergenic 25.0%
!!! GGTTTTTTGAACTTAAACTT+GGG + chr1_1:23136920-23136939 None:intergenic 25.0%
!!! TGGTTTTTTGAACTTAAACT+TGG + chr1_1:23136921-23136940 None:intergenic 25.0%
! TTCAAAAAACCAAAAATGGT+AGG - chr1_1:23136929-23136948 Msa0014570:five_prime_UTR 25.0%
! AATAAGCTGAGATATATACA+TGG - chr1_1:23137112-23137131 Msa0014570:five_prime_UTR 25.0%
! AACTTAACTTCCTACAATTA+TGG + chr1_1:23137365-23137384 None:intergenic 25.0%
!! GGCAAAGTATTGTATTGAAA+TGG + chr1_1:23132382-23132401 None:intergenic 30.0%
GCAAAAATGAATGTGTAAAG+AGG + chr1_1:23132426-23132445 None:intergenic 30.0%
! CTTGGTGTATAATGTATAGT+TGG + chr1_1:23132570-23132589 None:intergenic 30.0%
! GATTATTATTTGTTGGAGCT+TGG + chr1_1:23132588-23132607 None:intergenic 30.0%
GCTCCAACAAATAATAATCA+TGG - chr1_1:23132589-23132608 Msa0014570:three_prime_UTR 30.0%
TTTAGGAGAGAGAAATGAAA+AGG + chr1_1:23132651-23132670 None:intergenic 30.0%
TAAGAGAAGAAGAGTTAAGA+AGG + chr1_1:23132692-23132711 None:intergenic 30.0%
!!! TCTTGAATTGTGTTGTTTTG+AGG - chr1_1:23132909-23132928 Msa0014570:intron 30.0%
CTTATATGGATACTAGTGAT+AGG + chr1_1:23133009-23133028 None:intergenic 30.0%
GAGAAGAAACAAAACATCAT+TGG + chr1_1:23133280-23133299 None:intergenic 30.0%
!!! ATGATGTTTTGTTTCTTCTC+AGG - chr1_1:23133280-23133299 Msa0014570:CDS 30.0%
!! AGAAAGCACTTATGGTTATA+GGG - chr1_1:23133334-23133353 Msa0014570:intron 30.0%
! TTTTATTGTAAGGGAGAAAG+GGG - chr1_1:23133370-23133389 Msa0014570:intron 30.0%
!! TATGGGATTTTAGTATGACT+TGG - chr1_1:23133590-23133609 Msa0014570:intron 30.0%
!!! TCCTATTGTTTTTGCCAAAT+AGG - chr1_1:23133656-23133675 Msa0014570:intron 30.0%
TCCTATTTGGCAAAAACAAT+AGG + chr1_1:23133660-23133679 None:intergenic 30.0%
TATAGAATGAGTCTCTTGAT+TGG - chr1_1:23133691-23133710 Msa0014570:intron 30.0%
! TATTTTGTGTGCAGCAAATA+TGG - chr1_1:23133875-23133894 Msa0014570:intron 30.0%
! AAGATCAATTTTATGCATGG+TGG - chr1_1:23134130-23134149 Msa0014570:intron 30.0%
AATAAATGAAAGCTCTTCGA+TGG - chr1_1:23134608-23134627 Msa0014570:intron 30.0%
!!! TTCTGCTTTTAACTTGAGAA+TGG + chr1_1:23134885-23134904 None:intergenic 30.0%
TTCTCAAGTTAAAAGCAGAA+AGG - chr1_1:23134885-23134904 Msa0014570:intron 30.0%
ATAATAAGACTGGAGCTTAA+GGG + chr1_1:23134946-23134965 None:intergenic 30.0%
AATAATAAGACTGGAGCTTA+AGG + chr1_1:23134947-23134966 None:intergenic 30.0%
TCAAATTCCAAAGTTCGAAT+AGG + chr1_1:23135047-23135066 None:intergenic 30.0%
!! ATTCGAACTTTGGAATTTGA+TGG - chr1_1:23135047-23135066 Msa0014570:CDS 30.0%
TTCAACAGAGATAATAGAGA+AGG - chr1_1:23135158-23135177 Msa0014570:intron 30.0%
AAGAACTCGTATTTAAGAAG+AGG - chr1_1:23135308-23135327 Msa0014570:CDS 30.0%
AAATTCACGTTAATGCAACA+GGG + chr1_1:23135429-23135448 None:intergenic 30.0%
! GAATCCTCAATTTTTGATAC+AGG - chr1_1:23135496-23135515 Msa0014570:CDS 30.0%
ATGTTAGCTAATAGTTCACA+AGG + chr1_1:23135532-23135551 None:intergenic 30.0%
TAACAGATAGGATTGATAAG+TGG - chr1_1:23135602-23135621 Msa0014570:intron 30.0%
GAGAGAATTACAAACTTACT+TGG + chr1_1:23135669-23135688 None:intergenic 30.0%
GTAACTATAACCAAAATTCC+AGG - chr1_1:23135821-23135840 Msa0014570:CDS 30.0%
TGGAACTTTCAACAACAAAT+AGG + chr1_1:23135864-23135883 None:intergenic 30.0%
TTATAAGCAAAACACTAGCA+TGG - chr1_1:23135934-23135953 Msa0014570:CDS 30.0%
TATAAGCAAAACACTAGCAT+GGG - chr1_1:23135935-23135954 Msa0014570:CDS 30.0%
!! GACTTGTTTTCTATATGATG+GGG - chr1_1:23135971-23135990 Msa0014570:intron 30.0%
TGATTGTCAATGTCATATGT+AGG - chr1_1:23136070-23136089 Msa0014570:intron 30.0%
GACAAACAACAAATGCTTAT+AGG + chr1_1:23136197-23136216 None:intergenic 30.0%
!!! GGTCTGACAGAAATTTTTTT+TGG - chr1_1:23136309-23136328 Msa0014570:intron 30.0%
AGATCTACTCCTAAATCAAA+AGG - chr1_1:23136588-23136607 Msa0014570:intron 30.0%
!!! ATATGGCTTCCTTTTGATTT+AGG + chr1_1:23136600-23136619 None:intergenic 30.0%
AATCAAAAGGAAGCCATATA+TGG - chr1_1:23136601-23136620 Msa0014570:intron 30.0%
ATCAAAAGGAAGCCATATAT+GGG - chr1_1:23136602-23136621 Msa0014570:intron 30.0%
!!! CTGTTAGTTTTTTTTGGACT+AGG + chr1_1:23136634-23136653 None:intergenic 30.0%
!! AGCTTTAGAAAGACAAACAA+CGG - chr1_1:23136652-23136671 Msa0014570:intron 30.0%
TATGACATTGTATCTTCCTT+AGG + chr1_1:23136868-23136887 None:intergenic 30.0%
! GAAATACAACCTACCATTTT+TGG + chr1_1:23136941-23136960 None:intergenic 30.0%
!!! CTGGTTTTAACAATGTTTAC+AGG + chr1_1:23137062-23137081 None:intergenic 30.0%
!! AAAATTATGTGTTGGTGATG+TGG - chr1_1:23137529-23137548 Msa0014570:five_prime_UTR 30.0%
AATGTGTAAAGAGGCAATGT+AGG + chr1_1:23132417-23132436 None:intergenic 35.0%
!!! TATTTTTAGGGTTTGGTTGG+TGG + chr1_1:23132472-23132491 None:intergenic 35.0%
!!! TGGTATTTTTAGGGTTTGGT+TGG + chr1_1:23132475-23132494 None:intergenic 35.0%
AAGAAGAGTTAAGAAGGAAC+AGG + chr1_1:23132686-23132705 None:intergenic 35.0%
TGAGTGTAGAGTGTGAAAAA+GGG - chr1_1:23132947-23132966 Msa0014570:CDS 35.0%
AAGTGCAAGTAGTGCTTATA+TGG + chr1_1:23133023-23133042 None:intergenic 35.0%
TTCTTTGCTCAAAGAACTTG+AGG - chr1_1:23133041-23133060 Msa0014570:CDS 35.0%
!! GTTGATGATGATGAATAGTG+TGG - chr1_1:23133190-23133209 Msa0014570:CDS 35.0%
!! GAGAAAGCACTTATGGTTAT+AGG - chr1_1:23133333-23133352 Msa0014570:intron 35.0%
TATGCAGAGTCAATCCTATT+TGG + chr1_1:23133673-23133692 None:intergenic 35.0%
CAGCAAATATGGAACGATAT+TGG - chr1_1:23133886-23133905 Msa0014570:CDS 35.0%
!! TTATAGGAGAAAGGTTGATG+AGG - chr1_1:23133969-23133988 Msa0014570:intron 35.0%
!! TCAATCGACCTATTTTGAGA+AGG - chr1_1:23134219-23134238 Msa0014570:CDS 35.0%
!! CAATCGACCTATTTTGAGAA+GGG - chr1_1:23134220-23134239 Msa0014570:CDS 35.0%
TTCTTCAATTCTTCGACCAA+TGG + chr1_1:23134374-23134393 None:intergenic 35.0%
CTGGAAGAGAAAAAAAAGCA+CGG + chr1_1:23134690-23134709 None:intergenic 35.0%
!!! GCTTTTTTTTCTCTTCCAGT+CGG - chr1_1:23134691-23134710 Msa0014570:intron 35.0%
!! ATTGCAAGACTTTCTGAAGT+CGG + chr1_1:23134718-23134737 None:intergenic 35.0%
ATGTACATCCAAGTTTGCAT+GGG - chr1_1:23134801-23134820 Msa0014570:CDS 35.0%
ATTAGCAATAGCACATTGGA+AGG - chr1_1:23134848-23134867 Msa0014570:intron 35.0%
! AAGGAAATCTAGAGTACAGA+AGG - chr1_1:23134904-23134923 Msa0014570:intron 35.0%
! AAGAGAGAAACTCTTTTCTG+AGG - chr1_1:23135082-23135101 Msa0014570:CDS 35.0%
AAAGCACATTTCAGCAAACA+TGG + chr1_1:23135234-23135253 None:intergenic 35.0%
ACTCGTATTTAAGAAGAGGT+TGG - chr1_1:23135312-23135331 Msa0014570:CDS 35.0%
!! TTAATGCACTAGCTTTCTCA+GGG + chr1_1:23135390-23135409 None:intergenic 35.0%
!! ATTAATGCACTAGCTTTCTC+AGG + chr1_1:23135391-23135410 None:intergenic 35.0%
GCTAGTGCATTAATAGATTC+CGG - chr1_1:23135397-23135416 Msa0014570:CDS 35.0%
CAAATTCACGTTAATGCAAC+AGG + chr1_1:23135430-23135449 None:intergenic 35.0%
ATTGAGGATTCGATAGTATC+AGG + chr1_1:23135487-23135506 None:intergenic 35.0%
CAAGCCTGTATCAAAAATTG+AGG + chr1_1:23135503-23135522 None:intergenic 35.0%
! CTCAATTTTTGATACAGGCT+TGG - chr1_1:23135501-23135520 Msa0014570:CDS 35.0%
GTAGAAGAGAAGTAACAGAT+AGG - chr1_1:23135590-23135609 Msa0014570:intron 35.0%
TTGCTTGTGAAGAGGAAAAT+TGG - chr1_1:23135629-23135648 Msa0014570:intron 35.0%
! TTAATCTGAAACGTGCAGAA+CGG - chr1_1:23135792-23135811 Msa0014570:CDS 35.0%
ATAAGATTGTCAACCATTGC+TGG + chr1_1:23135918-23135937 None:intergenic 35.0%
GTGAAAACCAGAAATAACCA+TGG + chr1_1:23136013-23136032 None:intergenic 35.0%
!!! CTTCGCAGAGTTATTTTTAG+CGG - chr1_1:23136036-23136055 Msa0014570:intron 35.0%
ATGTCATATGTAGGTACGTT+TGG - chr1_1:23136079-23136098 Msa0014570:intron 35.0%
ATAGGAAAATATGGGCAAAG+AGG + chr1_1:23136179-23136198 None:intergenic 35.0%
TGTTCTACACCAATTTACAC+AGG + chr1_1:23136416-23136435 None:intergenic 35.0%
CAAAAACAGAAAACCAGAAG+TGG + chr1_1:23136544-23136563 None:intergenic 35.0%
!!! GGTTTTCTGTTTTTGATCTC+AGG - chr1_1:23136549-23136568 Msa0014570:intron 35.0%
! GTAGATCTTGCATCTTCTTT+TGG + chr1_1:23136576-23136595 None:intergenic 35.0%
ACTAGGTTTAGACCCATATA+TGG + chr1_1:23136617-23136636 None:intergenic 35.0%
TTTGAACTTAAACTTGGGGA+GGG + chr1_1:23136915-23136934 None:intergenic 35.0%
! TTTTGAACTTAAACTTGGGG+AGG + chr1_1:23136916-23136935 None:intergenic 35.0%
CAAGCAACATACTATTCACA+AGG + chr1_1:23137091-23137110 None:intergenic 35.0%
TTGACTATATGTGTGTGTTG+TGG - chr1_1:23137240-23137259 Msa0014570:five_prime_UTR 35.0%
TGACTATATGTGTGTGTTGT+GGG - chr1_1:23137241-23137260 Msa0014570:five_prime_UTR 35.0%
AGGTGAACGCTTTGGTTAAA+GGG + chr1_1:23132771-23132790 None:intergenic 40.0%
AAGGTGAACGCTTTGGTTAA+AGG + chr1_1:23132772-23132791 None:intergenic 40.0%
AGATCTAAAGGTGAACGCTT+TGG + chr1_1:23132779-23132798 None:intergenic 40.0%
GTGAGTGTAGAGTGTGAAAA+AGG - chr1_1:23132946-23132965 Msa0014570:CDS 40.0%
CTGTGAATAATGTTGGCCAT+TGG - chr1_1:23132979-23132998 Msa0014570:CDS 40.0%
ACTAGTGATAGGACTTCCAA+TGG + chr1_1:23132998-23133017 None:intergenic 40.0%
TATGGTTATAGGGTCTCTGT+AGG - chr1_1:23133344-23133363 Msa0014570:intron 40.0%
! ATGAAAGCGTGCTTTGATGT+TGG + chr1_1:23133998-23134017 None:intergenic 40.0%
TGGTGTTCCCTTCTCAAAAT+AGG + chr1_1:23134230-23134249 None:intergenic 40.0%
AGAAGAAAGGCTGAAACAGT+TGG - chr1_1:23134400-23134419 Msa0014570:intron 40.0%
AAGATAAGCGGTGAGATTTG+TGG - chr1_1:23134446-23134465 Msa0014570:intron 40.0%
TCACATCATCATTGACAGGA+TGG + chr1_1:23134475-23134494 None:intergenic 40.0%
ACACTCACATCATCATTGAC+AGG + chr1_1:23134479-23134498 None:intergenic 40.0%
GAATATCAAACGCATCTTCG+TGG - chr1_1:23134551-23134570 Msa0014570:CDS 40.0%
TCGTGGTCTTCAAAAGGAAA+AGG - chr1_1:23134568-23134587 Msa0014570:CDS 40.0%
AGTCTTGCAATGTGTGAATG+AGG - chr1_1:23134727-23134746 Msa0014570:CDS 40.0%
! GGTGTTCTTGGATTGGATTT+CGG - chr1_1:23134764-23134783 Msa0014570:CDS 40.0%
GATGTACATCATCTACCGTT+TGG + chr1_1:23134790-23134809 None:intergenic 40.0%
GATGTACATCCAAGTTTGCA+TGG - chr1_1:23134800-23134819 Msa0014570:CDS 40.0%
TCGCTAACCTATTCGAACTT+TGG - chr1_1:23135037-23135056 Msa0014570:CDS 40.0%
GAATCAGAAATCACCGAAAG+AGG - chr1_1:23135129-23135148 Msa0014570:CDS 40.0%
! TTGCTGAAATGTGCTTTTGC+AGG - chr1_1:23135237-23135256 Msa0014570:intron 40.0%
! AAATGTGCTTTTGCAGGCTT+CGG - chr1_1:23135243-23135262 Msa0014570:intron 40.0%
TAAGAAGAGGTTGGAGTTAG+AGG - chr1_1:23135321-23135340 Msa0014570:CDS 40.0%
!! TAATGCACTAGCTTTCTCAG+GGG + chr1_1:23135389-23135408 None:intergenic 40.0%
TAATGCAACAGGGAACATAC+CGG + chr1_1:23135419-23135438 None:intergenic 40.0%
! CGTGCACTATGAAAGTATAC+AGG + chr1_1:23135691-23135710 None:intergenic 40.0%
! CATAGTGCACGTCGATTATT+TGG - chr1_1:23135700-23135719 Msa0014570:intron 40.0%
CTTGTTCTCTGACCTGATAT+GGG - chr1_1:23135723-23135742 Msa0014570:intron 40.0%
TTGTTCTCTGACCTGATATG+GGG - chr1_1:23135724-23135743 Msa0014570:intron 40.0%
ATCCTGAAATTCCCCATATC+AGG + chr1_1:23135738-23135757 None:intergenic 40.0%
GGGAATTTCAGGATAACACT+CGG - chr1_1:23135744-23135763 Msa0014570:intron 40.0%
! TAATCTGAAACGTGCAGAAC+GGG - chr1_1:23135793-23135812 Msa0014570:CDS 40.0%
! GACAGCAATACCTGGAATTT+TGG + chr1_1:23135834-23135853 None:intergenic 40.0%
GCATTTATGACAGCAATACC+TGG + chr1_1:23135842-23135861 None:intergenic 40.0%
! TTGTTGTTGAAAGTTCCACG+TGG - chr1_1:23135866-23135885 Msa0014570:CDS 40.0%
AGAGAACACACTGTCACTAT+AGG + chr1_1:23135893-23135912 None:intergenic 40.0%
! AAGTGGTCCATGGTTATTTC+TGG - chr1_1:23136003-23136022 Msa0014570:intron 40.0%
CGCTAAAAATAACTCTGCGA+AGG + chr1_1:23136038-23136057 None:intergenic 40.0%
TCATATGTAGGTACGTTTGG+TGG - chr1_1:23136082-23136101 Msa0014570:intron 40.0%
! GGTACGTTTGGTGGAATTAT+TGG - chr1_1:23136091-23136110 Msa0014570:intron 40.0%
ACCCTACTAGAGGTAGTAAA+AGG - chr1_1:23136457-23136476 Msa0014570:intron 40.0%
! CCCTTTTACTACCTCTAGTA+GGG + chr1_1:23136461-23136480 None:intergenic 40.0%
CCCTACTAGAGGTAGTAAAA+GGG - chr1_1:23136458-23136477 Msa0014570:intron 40.0%
! TCCCTTTTACTACCTCTAGT+AGG + chr1_1:23136462-23136481 None:intergenic 40.0%
AACAACGGTTATCGTGCAAA+TGG - chr1_1:23136667-23136686 Msa0014570:intron 40.0%
CAACTTTGTGGCTATACCTA+AGG - chr1_1:23136849-23136868 Msa0014570:CDS 40.0%
TTGAACTTAAACTTGGGGAG+GGG + chr1_1:23136914-23136933 None:intergenic 40.0%
GATAATGACTCTACTTGTGC+AGG - chr1_1:23137020-23137039 Msa0014570:five_prime_UTR 40.0%
! ACTATTCACAAGGTTTGCTC+TGG + chr1_1:23137081-23137100 None:intergenic 40.0%
! TGAGGACAGGAAATTAGCTT+TGG - chr1_1:23137165-23137184 Msa0014570:five_prime_UTR 40.0%
!! GAGGACAGGAAATTAGCTTT+GGG - chr1_1:23137166-23137185 Msa0014570:five_prime_UTR 40.0%
CAATGTAGGAGCAGGTAAAG+AGG + chr1_1:23132403-23132422 None:intergenic 45.0%
TAAAGAGGCAATGTAGGAGC+AGG + chr1_1:23132411-23132430 None:intergenic 45.0%
GGACAAAGACCGTATGTTGA+TGG - chr1_1:23133921-23133940 Msa0014570:CDS 45.0%
TCTCCAGCTCCATCAACATA+CGG + chr1_1:23133933-23133952 None:intergenic 45.0%
TGTTGCAATCTCAGCTTCCT+TGG + chr1_1:23134034-23134053 None:intergenic 45.0%
GCAACACTAATAGCTGCACT+CGG - chr1_1:23134048-23134067 Msa0014570:CDS 45.0%
CAACACTAATAGCTGCACTC+GGG - chr1_1:23134049-23134068 Msa0014570:CDS 45.0%
AACACTAATAGCTGCACTCG+GGG - chr1_1:23134050-23134069 Msa0014570:CDS 45.0%
GGAACATGATATGAGCTCTC+CGG - chr1_1:23134071-23134090 Msa0014570:CDS 45.0%
AAAGAGATCTGCATCGCTGA+AGG - chr1_1:23134328-23134347 Msa0014570:CDS 45.0%
GCATCTTCGTGGTCTTCAAA+AGG - chr1_1:23134562-23134581 Msa0014570:CDS 45.0%
AATGAGGTGCATTCTCTCTG+TGG - chr1_1:23134743-23134762 Msa0014570:CDS 45.0%
CATTCTCTCTGTGGTGTTCT+TGG - chr1_1:23134752-23134771 Msa0014570:CDS 45.0%
TCTCTGTGGTGTTCTTGGAT+TGG - chr1_1:23134757-23134776 Msa0014570:CDS 45.0%
! TGGATTGGATTTCGGCCAAA+CGG - chr1_1:23134772-23134791 Msa0014570:CDS 45.0%
!! TGTTGAAAGAGCGCCTCTTT+CGG + chr1_1:23135145-23135164 None:intergenic 45.0%
GCTTGTTCTCTGACCTGATA+TGG - chr1_1:23135722-23135741 Msa0014570:intron 45.0%
GACCTGATATGGGGAATTTC+AGG - chr1_1:23135733-23135752 Msa0014570:intron 45.0%
ATAACACTCGGTACAGTGCT+GGG - chr1_1:23135756-23135775 Msa0014570:intron 45.0%
GTGTGTTCTCTTTCCAGCAA+TGG - chr1_1:23135902-23135921 Msa0014570:CDS 45.0%
TGATGGGGTAAGCTTCAAAG+TGG - chr1_1:23135986-23136005 Msa0014570:intron 45.0%
GTAAGCTTCAAAGTGGTCCA+TGG - chr1_1:23135993-23136012 Msa0014570:intron 45.0%
CTCTTCTTCTCTCTGTTGTC+TGG + chr1_1:23136132-23136151 None:intergenic 45.0%
AAGAAGAGAAGAGACGACAG+AGG - chr1_1:23136144-23136163 Msa0014570:intron 45.0%
AGAAGAGAAGAGACGACAGA+GGG - chr1_1:23136145-23136164 Msa0014570:intron 45.0%
TCCTACTCTGGTCGTCATAA+CGG - chr1_1:23136787-23136806 Msa0014570:intron 45.0%
TACTGCACCTCTCAACTTTG+TGG - chr1_1:23136837-23136856 Msa0014570:CDS 45.0%
GGTATAGCCACAAAGTTGAG+AGG + chr1_1:23136847-23136866 None:intergenic 45.0%
AGTGGGATAGCTGACATTTG+AGG - chr1_1:23137147-23137166 Msa0014570:five_prime_UTR 45.0%
GATAGCTGACATTTGAGGAC+AGG - chr1_1:23137152-23137171 Msa0014570:five_prime_UTR 45.0%
!! GCTTTGGGAAGTGTTGATAC+AGG - chr1_1:23137181-23137200 Msa0014570:five_prime_UTR 45.0%
!! TGGGAAGTGTTGATACAGGT+AGG - chr1_1:23137185-23137204 Msa0014570:five_prime_UTR 45.0%
!! GGGAAGTGTTGATACAGGTA+GGG - chr1_1:23137186-23137205 Msa0014570:five_prime_UTR 45.0%
GATACAGGTAGGGACAGTTA+AGG - chr1_1:23137196-23137215 Msa0014570:five_prime_UTR 45.0%
ACCAAGTGTCAGTGTTGTGT+TGG + chr1_1:23137478-23137497 None:intergenic 45.0%
CGATATTGGAGAGAGCGAGA+AGG - chr1_1:23133900-23133919 Msa0014570:CDS 50.0%
! AGACCGTATGTTGATGGAGC+TGG - chr1_1:23133927-23133946 Msa0014570:CDS 50.0%
TCATCAATCCCTTGCAGCCA+AGG - chr1_1:23134014-23134033 Msa0014570:intron 50.0%
GCTTGCATCTGTCACACCAT+TGG - chr1_1:23134355-23134374 Msa0014570:intron 50.0%
TCCAAGTTTGCATGGGACTC+AGG - chr1_1:23134808-23134827 Msa0014570:CDS 50.0%
ACCTGAGTCCCATGCAAACT+TGG + chr1_1:23134812-23134831 None:intergenic 50.0%
AAGTTTGCATGGGACTCAGG+TGG - chr1_1:23134811-23134830 Msa0014570:CDS 50.0%
TCAGGGGCAGTACTTGTATC+AGG + chr1_1:23135373-23135392 None:intergenic 50.0%
GTGGCTGTTTGCTTGTGAAG+AGG - chr1_1:23135621-23135640 Msa0014570:intron 50.0%
GATAACACTCGGTACAGTGC+TGG - chr1_1:23135755-23135774 Msa0014570:intron 50.0%
ACTGTCACTATAGGTCCACG+TGG + chr1_1:23135884-23135903 None:intergenic 50.0%
GGCTGTCTTAACCCTACTAG+AGG - chr1_1:23136447-23136466 Msa0014570:intron 50.0%
ATTGAGTTCCGTCGAGGTGT+AGG + chr1_1:23136733-23136752 None:intergenic 50.0%
TCCGTTATGACGACCAGAGT+AGG + chr1_1:23136791-23136810 None:intergenic 50.0%
TTAAACTTGGGGAGGGGACT+CGG + chr1_1:23136908-23136927 None:intergenic 50.0%
ACATGGACAGTGAGACTGAG+TGG - chr1_1:23137129-23137148 Msa0014570:five_prime_UTR 50.0%
CATGGACAGTGAGACTGAGT+GGG - chr1_1:23137130-23137149 Msa0014570:five_prime_UTR 50.0%
GCCAACACAACACTGACACT+TGG - chr1_1:23137474-23137493 Msa0014570:five_prime_UTR 50.0%
GGTGATGTGGTGATTAGAGC+TGG - chr1_1:23137542-23137561 Msa0014570:five_prime_UTR 50.0%
CTCAGCTTCCTTGGCTGCAA+GGG + chr1_1:23134025-23134044 None:intergenic 55.0%
TCTCAGCTTCCTTGGCTGCA+AGG + chr1_1:23134026-23134045 None:intergenic 55.0%
GATGTGAGTGTCAGCAGCAC+AGG - chr1_1:23134488-23134507 Msa0014570:CDS 55.0%
!! CTTTCTGAAGTCGGTCCGAC+TGG + chr1_1:23134709-23134728 None:intergenic 55.0%
TTTGCAGGCTTCGGCAGAAG+TGG - chr1_1:23135252-23135271 Msa0014570:intron 55.0%
CGTGCAAATGGCAACAGCGT+CGG - chr1_1:23136679-23136698 Msa0014570:intron 55.0%
!! AATGGCAACAGCGTCGGCTA+TGG - chr1_1:23136685-23136704 Msa0014570:intron 55.0%
!! AACAGCGTCGGCTATGGCAA+TGG - chr1_1:23136691-23136710 Msa0014570:intron 55.0%
GTCGGCTATGGCAATGGCAA+TGG - chr1_1:23136697-23136716 Msa0014570:intron 55.0%
CTATGCCTCCTACACCTCGA+CGG - chr1_1:23136722-23136741 Msa0014570:intron 55.0%
CCTCGACGGAACTCAATGAG+CGG - chr1_1:23136736-23136755 Msa0014570:intron 55.0%
TAAACTTGGGGAGGGGACTC+GGG + chr1_1:23136907-23136926 None:intergenic 55.0%
GTGAGTGTCAGCAGCACAGG+TGG - chr1_1:23134491-23134510 Msa0014570:CDS 60.0%
GAGTTCCGTCGAGGTGTAGG+AGG + chr1_1:23136730-23136749 None:intergenic 60.0%
CCGCTCATTGAGTTCCGTCG+AGG + chr1_1:23136739-23136758 None:intergenic 60.0%
TGACGACCAGAGTAGGAGCG+CGG + chr1_1:23136784-23136803 None:intergenic 60.0%
! ACTCGGTACAGTGCTGGGCG+AGG - chr1_1:23135761-23135780 Msa0014570:intron 65.0%
CACACACCGCGCTCCTACTC+TGG - chr1_1:23136775-23136794 Msa0014570:intron 65.0%
TTGGGGAGGGGACTCGGGTT+CGG + chr1_1:23136902-23136921 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 23132307 23137565 23132307 ID=Msa0014570;Name=Msa0014570
chr1_1 mRNA 23132307 23137565 23132307 ID=Msa0014570-mRNA-1;Parent=Msa0014570;Name=Msa0014570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=681|1|1|1|0.90|0.83|12|543|609
chr1_1 exon 23132307 23132830 23132307 ID=Msa0014570-mRNA-1:exon:8117;Parent=Msa0014570-mRNA-1
chr1_1 exon 23132926 23133301 23132926 ID=Msa0014570-mRNA-1:exon:8116;Parent=Msa0014570-mRNA-1
chr1_1 exon 23133706 23133780 23133706 ID=Msa0014570-mRNA-1:exon:8115;Parent=Msa0014570-mRNA-1
chr1_1 exon 23133880 23133953 23133880 ID=Msa0014570-mRNA-1:exon:8114;Parent=Msa0014570-mRNA-1
chr1_1 exon 23134030 23134117 23134030 ID=Msa0014570-mRNA-1:exon:8113;Parent=Msa0014570-mRNA-1
chr1_1 exon 23134203 23134354 23134203 ID=Msa0014570-mRNA-1:exon:8112;Parent=Msa0014570-mRNA-1
chr1_1 exon 23134454 23134613 23134454 ID=Msa0014570-mRNA-1:exon:8111;Parent=Msa0014570-mRNA-1
chr1_1 exon 23134693 23134848 23134693 ID=Msa0014570-mRNA-1:exon:8110;Parent=Msa0014570-mRNA-1
chr1_1 exon 23134947 23135162 23134947 ID=Msa0014570-mRNA-1:exon:8109;Parent=Msa0014570-mRNA-1
chr1_1 exon 23135283 23135555 23135283 ID=Msa0014570-mRNA-1:exon:8108;Parent=Msa0014570-mRNA-1
chr1_1 exon 23135780 23135983 23135780 ID=Msa0014570-mRNA-1:exon:8107;Parent=Msa0014570-mRNA-1
chr1_1 exon 23136810 23137565 23136810 ID=Msa0014570-mRNA-1:exon:8106;Parent=Msa0014570-mRNA-1
chr1_1 five_prime_UTR 23136885 23137565 23136885 ID=Msa0014570-mRNA-1:five_prime_utr;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23136810 23136884 23136810 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23135780 23135983 23135780 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23135283 23135555 23135283 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23134947 23135162 23134947 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23134693 23134848 23134693 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23134454 23134613 23134454 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23134203 23134354 23134203 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23134030 23134117 23134030 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23133880 23133953 23133880 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23133706 23133780 23133706 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 CDS 23132945 23133301 23132945 ID=Msa0014570-mRNA-1:cds;Parent=Msa0014570-mRNA-1
chr1_1 three_prime_UTR 23132926 23132944 23132926 ID=Msa0014570-mRNA-1:three_prime_utr;Parent=Msa0014570-mRNA-1
chr1_1 three_prime_UTR 23132307 23132830 23132307 ID=Msa0014570-mRNA-1:three_prime_utr;Parent=Msa0014570-mRNA-1
Gene Sequence

>Msa0014570

ATGTTGGCCATTGGAAGTCCTATCACTAGTATCCATATAAGCACTACTTGCACTTCTTTGCTCAAAGAACTTGAGCAAATATGGAACGATATTGGAGAGAGCGAGAAGGACAAAGACCGTATGTTGATGGAGCTGGAGAGAGAATGTTTAGATGTTTATAGGAGAAAGGTTGATGAGGCTGCCAACATCAAAGCACGCTTTCATCAATCCCTTGCAGCCAAGGAAGCTGAGATTGCAACACTAATAGCTGCACTCGGGGAACATGATATGAGCTCTCCGATTAAGATGGAAAAGAGATCTGCATCGCTGAAGGAGAAGCTTGCATCTGTCACACCATTGGTCGAAGAATTGAAGAAGAAAAAAGAAGAAAGGCTGAAACAGTTGGCAGATATTAAAACTCAAATAGAAAAGATAAGCGGTGAGATTTGTGGAATCCATCCTGTCAATGATGATGTGAGTGTCAGCAGCACAGGTGGTGTAGACGAACAAGACTTGTCACTTAGAAGACTTAATGAATATCAAACGCATCTTCGTGGTCTTCAAAAGGAAAAGTCGGACCGACTTCAGAAAGTCTTGCAATGTGTGAATGAGGTGCATTCTCTCTGTGGTGTTCTTGGATTGGATTTCGGCCAAACGGTAGATGATGTACATCCAAGTTTGCATGGGACTCAGGTGGAACAATCGACTAATATTAGCAATAGCACATTGGAAGGTCTAGAGAAGACCATTCTCAAGTTAAAAGCAGAAAGGAAATCTAGAGTACAGAAGTTGAAGGACGTTGTCGCTAACCTATTCGAACTTTGGAATTTGATGGACACTTCAAAAGAAGAGAGAAACTCTTTTCTGAGGAATACTTCTATTGTCACAACTTCAGAATCAGAAATCACCGAAAGAGGCGCTCTTTCAACAGAGATAATAGAGAAGGCTTCGGCAGAAGTGGAAAGACTTGCTAAACTAAAAGCGAGTAGAATGAAAGAACTCGTATTTAAGAAGAGGTTGGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCTGATACAAGTACTGCCCCTGAGAAAGCTAGTGCATTAATAGATTCCGGCTTGGTTGATCCTTGTGAACTATTAGCTAACATTGAATCACAAATAGTAAAGGCAAAAGATGAAGCTTTGAGTAGAAGAGAAGTAACAGATAGGATTGATAAGTGGCTGTTTGCTTGTGAAGAGGAAAATTGGCTCGACGAATATAGCCAAGATAACACTCGGTACAGTGCTGGGCGAGGTGCTCACATTAATCTGAAACGTGCAGAACGGGCAAGAGTAACTATAACCAAAATTCCAGCAATGGTTGACAATCTTATAAGCAAAACACTAGCATGGGAAGATGAAAAGAAGACTTGTTTTCTATATGATGGGGTACGTTTGGTGGAATTATTGGATGATTACAAACTGACCAGACAACAGAGAGAAGAAGAGAAGAGACGACAGAGGGACCAAAAGAAGATGCAAGATCTACTCCTAAATCAAAAGGAAGCCATATATGGGTCTAAACCTAGTCCAAAAAAAACTAACAGCTTTAGAAAGACAAACAACGGTTATCGTGCAAATGGCAACAGCGTCGGCTATGGCAATGGCAATGGATCTATGCCTCCTACACCTCGACGGAACTCAATGAGCGGTACAACATCTGAACTACACACACCGCGCTCCTACTCTGGTCGTCATAACGGATACTTCAACGAAATGAGAAGATTGTCTACTGCACCTCTCAACTTTGTGGCTATACCTAAGGAAGATACAATGTCATATAGTTGCAGTTCCGAACCCGAGTCCCCTCCCCAAGTTTAA

Protein sequence

>Msa0014570

MLAIGSPITSIHISTTCTSLLKELEQIWNDIGESEKDKDRMLMELERECLDVYRRKVDEAANIKARFHQSLAAKEAEIATLIAALGEHDMSSPIKMEKRSASLKEKLASVTPLVEELKKKKEERLKQLADIKTQIEKISGEICGIHPVNDDVSVSSTGGVDEQDLSLRRLNEYQTHLRGLQKEKSDRLQKVLQCVNEVHSLCGVLGLDFGQTVDDVHPSLHGTQVEQSTNISNSTLEGLEKTILKLKAERKSRVQKLKDVVANLFELWNLMDTSKEERNSFLRNTSIVTTSESEITERGALSTEIIEKASAEVERLAKLKASRMKELVFKKRLELEEICRLTHIEPDTSTAPEKASALIDSGLVDPCELLANIESQIVKAKDEALSRREVTDRIDKWLFACEEENWLDEYSQDNTRYSAGRGAHINLKRAERARVTITKIPAMVDNLISKTLAWEDEKKTCFLYDGVRLVELLDDYKLTRQQREEEKRRQRDQKKMQDLLLNQKEAIYGSKPSPKKTNSFRKTNNGYRANGNSVGYGNGNGSMPPTPRRNSMSGTTSELHTPRSYSGRHNGYFNEMRRLSTAPLNFVAIPKEDTMSYSCSSEPESPPQV*