Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424410 | XP_013461380.1 | 99.648 | 568 | 2 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424410 | sp|O49048|VPS45_ARATH | 84.359 | 569 | 88 | 1 | 1 | 568 | 1 | 569 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424410 | A0A072VB81 | 99.648 | 568 | 2 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138020 | Msa0424410 | 0.803736 | 3.023090e-49 | -8.615850e-47 |
| Msa0141180 | Msa0424410 | 0.979942 | 4.344992e-149 | -8.615850e-47 |
| Msa0205010 | Msa0424410 | 0.803846 | 2.868779e-49 | -8.615850e-47 |
| Msa0217700 | Msa0424410 | 0.807500 | 4.904249e-50 | -8.615850e-47 |
| Msa0424410 | Msa0620460 | 0.802933 | 4.434823e-49 | -8.615850e-47 |
| Msa0424410 | Msa0642730 | 0.811330 | 7.390893e-51 | -8.615850e-47 |
| Msa0424410 | Msa0741440 | 0.816588 | 5.118897e-52 | -8.615850e-47 |
| Msa0424410 | Msa0786750 | 0.807924 | 3.985231e-50 | -8.615850e-47 |
| Msa0424410 | Msa0822500 | 0.816163 | 6.370114e-52 | -8.615850e-47 |
| Msa0424410 | Msa1179630 | 0.802532 | 5.364649e-49 | -8.615850e-47 |
| Msa0424410 | Msa1207310 | 0.822278 | 2.580319e-53 | -8.615850e-47 |
| Msa0424410 | Msa1246360 | 0.806746 | 7.080855e-50 | -8.615850e-47 |
| Msa0424410 | Msa1346840 | 0.804988 | 1.658132e-49 | -8.615850e-47 |
| Msa0424410 | Msa1415460 | 0.953746 | 1.387002e-111 | -8.615850e-47 |
| Msa0424410 | Msa1448560 | 0.805428 | 1.341497e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424410 | MtrunA17_Chr3g0126071 | 99.472 | 568 | 2 | 1 | 1 | 568 | 1 | 567 | 0.0 | 1158 |
| Msa0424410 | MtrunA17_Chr4g0056851 | 23.404 | 517 | 346 | 17 | 19 | 499 | 146 | 648 | 4.65e-25 | 110 |
| Msa0424410 | MtrunA17_Chr4g0051171 | 23.614 | 559 | 351 | 21 | 22 | 525 | 39 | 576 | 8.96e-24 | 105 |
| Msa0424410 | MtrunA17_Chr5g0398701 | 23.776 | 429 | 281 | 13 | 19 | 414 | 43 | 458 | 1.69e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424410 | AT1G77140.1 | 84.359 | 569 | 88 | 1 | 1 | 568 | 1 | 569 | 0.0 | 997 |
| Msa0424410 | AT1G02010.3 | 24.405 | 504 | 343 | 16 | 17 | 494 | 41 | 532 | 1.49e-32 | 132 |
| Msa0424410 | AT1G02010.2 | 24.206 | 504 | 344 | 16 | 17 | 494 | 41 | 532 | 1.94e-32 | 132 |
| Msa0424410 | AT1G02010.5 | 24.405 | 504 | 343 | 16 | 17 | 494 | 9 | 500 | 2.12e-32 | 132 |
| Msa0424410 | AT1G02010.1 | 24.206 | 504 | 344 | 16 | 17 | 494 | 41 | 532 | 2.74e-32 | 132 |
| Msa0424410 | AT1G02010.4 | 23.738 | 535 | 338 | 19 | 17 | 494 | 41 | 562 | 1.65e-31 | 130 |
| Msa0424410 | AT4G12120.1 | 23.397 | 624 | 370 | 20 | 22 | 556 | 44 | 648 | 2.68e-30 | 126 |
| Msa0424410 | AT1G12360.1 | 24.277 | 519 | 338 | 16 | 19 | 499 | 41 | 542 | 8.57e-30 | 124 |
| Msa0424410 | AT2G17980.1 | 24.833 | 600 | 355 | 23 | 22 | 554 | 35 | 605 | 5.63e-25 | 109 |
| Msa0424410 | AT1G02010.6 | 24.784 | 347 | 230 | 12 | 170 | 494 | 46 | 383 | 2.10e-22 | 101 |
Find 152 sgRNAs with CRISPR-Local
Find 460 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTCACCGAATAAATT+TGG | 0.154667 | 3_2:+74611796 | Msa0424410:three_prime_UTR |
| CCAAGTCTTCCATCATCTTT+TGG | 0.221604 | 3_2:+74611515 | Msa0424410:three_prime_UTR |
| AAGAGAACTGGTGATCTTTA+TGG | 0.249179 | 3_2:+74609619 | Msa0424410:CDS |
| TGACAATGCTTTCCATGATT+TGG | 0.250559 | 3_2:-74610078 | None:intergenic |
| TGATTTAGCAATGGGGTTAC+AGG | 0.252751 | 3_2:-74607506 | None:intergenic |
| ATTTACCCCAGGTTTGTATT+TGG | 0.273417 | 3_2:-74609265 | None:intergenic |
| ATACATGTTAGCTTTGAAAA+AGG | 0.276081 | 3_2:-74607866 | None:intergenic |
| CACCAACCATTGATCAATTT+AGG | 0.276401 | 3_2:+74611363 | Msa0424410:three_prime_UTR |
| AAACCGAACGCCTGTATTAC+TGG | 0.282191 | 3_2:-74610432 | None:intergenic |
| AGGGTAGTTGTCAACAAATT+TGG | 0.318368 | 3_2:-74608126 | None:intergenic |
| GTTCTTTGATATCTAATAAC+TGG | 0.324443 | 3_2:-74607061 | None:intergenic |
| TATGAGAATTTCGGAGATAT+TGG | 0.329104 | 3_2:+74607886 | Msa0424410:CDS |
| GCTAACATGTATGAGAATTT+CGG | 0.350102 | 3_2:+74607877 | Msa0424410:CDS |
| AAAAGCTGCATTAATTGAAC+AGG | 0.355320 | 3_2:-74609219 | None:intergenic |
| AAATAACACCCAAATTTATT+CGG | 0.360837 | 3_2:-74611805 | None:intergenic |
| CCAGCTGACGACGCATATAC+TGG | 0.362544 | 3_2:-74605985 | None:intergenic |
| CAGCCTGCTTCAAAAGAAAC+TGG | 0.370290 | 3_2:-74609588 | None:intergenic |
| TATCCAACCTCCTGATCCTT+TGG | 0.374257 | 3_2:-74607723 | None:intergenic |
| TGAAAGTGATTCCCAACAAA+TGG | 0.376536 | 3_2:-74610127 | None:intergenic |
| AGGTTTGTATTTGGCAGATC+TGG | 0.379649 | 3_2:-74609256 | None:intergenic |
| GACGTAATTATCTTCATTGT+TGG | 0.380475 | 3_2:+74610365 | Msa0424410:CDS |
| CAATGAAAGCATATCAGATA+TGG | 0.385298 | 3_2:+74609146 | Msa0424410:CDS |
| TATTCACTTACTTGCCGATT+CGG | 0.392826 | 3_2:+74606220 | Msa0424410:CDS |
| TGTCTTCACCGAATAAATTT+GGG | 0.394617 | 3_2:+74611797 | Msa0424410:three_prime_UTR |
| GCTAAATCAATGGACCTATC+AGG | 0.396844 | 3_2:+74607520 | Msa0424410:CDS |
| AGGTCCATTGATTTAGCAAT+GGG | 0.398442 | 3_2:-74607514 | None:intergenic |
| GATGTAGACTACCCATTTGT+TGG | 0.398592 | 3_2:+74610115 | Msa0424410:CDS |
| AAAAGTACAAACCTACTGTT+TGG | 0.401418 | 3_2:-74607969 | None:intergenic |
| TGACGTCCACTTTGTTGTCT+TGG | 0.402333 | 3_2:-74607683 | None:intergenic |
| CATTGCAGCGTTTCAGTGAT+CGG | 0.405105 | 3_2:+74606993 | Msa0424410:CDS |
| TGATCAATTTAGGTGCTAAT+CGG | 0.410119 | 3_2:+74611373 | Msa0424410:three_prime_UTR |
| GGAACAGAAGCGGCTGGTGC+TGG | 0.415969 | 3_2:-74610057 | None:intergenic |
| CTTTGTTGTTGGTGATTGAC+AGG | 0.418863 | 3_2:+74607474 | Msa0424410:CDS |
| GGAAGTTGTCCAGCAAGTTC+AGG | 0.420425 | 3_2:+74606250 | Msa0424410:CDS |
| TTCAGTGATCGGGTTGTTGA+AGG | 0.423672 | 3_2:+74607004 | Msa0424410:CDS |
| CTGTTGTTTGAAGTATATCC+TGG | 0.425517 | 3_2:+74611176 | Msa0424410:exon |
| GCCGCTTCTGTTCCAAATCA+TGG | 0.426968 | 3_2:+74610066 | Msa0424410:CDS |
| CGTTCGTCGTCCTCGGTCGC+TGG | 0.429357 | 3_2:+74604521 | Msa0424410:five_prime_UTR |
| TGGTAAATTTCCAAAGGATC+AGG | 0.431077 | 3_2:+74607713 | Msa0424410:CDS |
| GCATGGCATTATGTGCTGCC+TGG | 0.431512 | 3_2:+74611726 | Msa0424410:three_prime_UTR |
| TCGTCCTCGGTCGCTGGTGG+TGG | 0.436828 | 3_2:+74604527 | Msa0424410:five_prime_UTR |
| AGGTGATATTCTCCGAATCT+AGG | 0.437587 | 3_2:-74606013 | None:intergenic |
| CTACAAAATGCCAGTAATAC+AGG | 0.437679 | 3_2:+74610422 | Msa0424410:CDS |
| CTTCTGTTCTTAATTCGAAA+AGG | 0.438619 | 3_2:+74610468 | Msa0424410:CDS |
| GAGCAGTTACCTGAACTTGC+TGG | 0.439375 | 3_2:-74606259 | None:intergenic |
| ACTTGCCGATTCGGATGAAC+AGG | 0.442987 | 3_2:+74606229 | Msa0424410:CDS |
| GGTACAATGAAAGAAACCTT+TGG | 0.443823 | 3_2:+74611487 | Msa0424410:three_prime_UTR |
| GGAAGTTTCTCCTTTGTTGT+TGG | 0.444492 | 3_2:+74607463 | Msa0424410:CDS |
| ATTGCAGCGTTTCAGTGATC+GGG | 0.449810 | 3_2:+74606994 | Msa0424410:CDS |
| TAATTTCACTGATACCTGAT+AGG | 0.453387 | 3_2:-74607534 | None:intergenic |
| GGCGTTCGGTTTATACTTGG+TGG | 0.454629 | 3_2:+74610443 | Msa0424410:CDS |
| CTGCTAAAGGAGTTCGATGT+TGG | 0.456898 | 3_2:+74611297 | Msa0424410:three_prime_UTR |
| GCTGAAGGATCTACGACAGC+TGG | 0.458094 | 3_2:-74606971 | None:intergenic |
| ATGTAGACTACCCATTTGTT+GGG | 0.461033 | 3_2:+74610116 | Msa0424410:CDS |
| TGACATTGGTTCGCTTGACT+TGG | 0.461059 | 3_2:-74605918 | None:intergenic |
| AAGCACAGTTGCAACGTTGA+TGG | 0.461613 | 3_2:+74611704 | Msa0424410:three_prime_UTR |
| AGAAGAAGGTTTCAGAGTTG+AGG | 0.462996 | 3_2:-74604572 | None:intergenic |
| CGAAAAGACCACTTTCCTCT+TGG | 0.465084 | 3_2:-74607427 | None:intergenic |
| CCAAAAGATGATGGAAGACT+TGG | 0.466156 | 3_2:-74611515 | None:intergenic |
| CCAGTATATGCGTCGTCAGC+TGG | 0.470524 | 3_2:+74605985 | Msa0424410:CDS |
| AAGGTCTCGTTCGTCGTCCT+CGG | 0.470821 | 3_2:+74604514 | Msa0424410:five_prime_UTR |
| AGATATGGACAGACTACGTT+TGG | 0.477621 | 3_2:+74609161 | Msa0424410:CDS |
| AACTTCCTGTTCATCCGAAT+CGG | 0.481907 | 3_2:-74606234 | None:intergenic |
| CAAGAGTTGGCTTGCAATGG+AGG | 0.487233 | 3_2:+74608254 | Msa0424410:CDS |
| TAACCCCATTGCTAAATCAA+TGG | 0.491624 | 3_2:+74607510 | Msa0424410:CDS |
| CACCTAAATTGATCAATGGT+TGG | 0.492532 | 3_2:-74611365 | None:intergenic |
| TTAGCACCTAAATTGATCAA+TGG | 0.495510 | 3_2:-74611369 | None:intergenic |
| TGAAGCAGTGAATCTACAAA+TGG | 0.498700 | 3_2:-74611627 | None:intergenic |
| ACAGGCGTTCGGTTTATACT+TGG | 0.500052 | 3_2:+74610440 | Msa0424410:CDS |
| ATGTGGAAAGTGAAATGATA+AGG | 0.501072 | 3_2:-74606923 | None:intergenic |
| CATGGCATTATGTGCTGCCT+GGG | 0.502158 | 3_2:+74611727 | Msa0424410:three_prime_UTR |
| ACAAGACATATCTGGCATGA+AGG | 0.502340 | 3_2:+74604695 | Msa0424410:CDS |
| CTAGATTAGCCAAAAGATGA+TGG | 0.502917 | 3_2:-74611524 | None:intergenic |
| AAGTGTAAAACGGTGCGTTA+AGG | 0.504173 | 3_2:+74604495 | Msa0424410:five_prime_UTR |
| AGCATATAAATGTAGTTTGA+AGG | 0.505144 | 3_2:-74606947 | None:intergenic |
| GAACAGAAGCGGCTGGTGCT+GGG | 0.506152 | 3_2:-74610056 | None:intergenic |
| GCTATGGTTCATGAATTGAT+AGG | 0.508083 | 3_2:+74607657 | Msa0424410:CDS |
| GTAATTATCTTCATTGTTGG+CGG | 0.510705 | 3_2:+74610368 | Msa0424410:CDS |
| GAAAGTGATTCCCAACAAAT+GGG | 0.512036 | 3_2:-74610126 | None:intergenic |
| TTCACAAACAGAACAAGAGT+TGG | 0.512486 | 3_2:+74608241 | Msa0424410:CDS |
| ATGATGGTCCTTCAATATGT+TGG | 0.514547 | 3_2:-74606198 | None:intergenic |
| CAATGAAGATAATTACGTCC+TGG | 0.515072 | 3_2:-74610361 | None:intergenic |
| TTCCTCATCGATTCACAAGA+TGG | 0.517668 | 3_2:+74604632 | Msa0424410:exon |
| CATCTTTACAAGACAATCCC+AGG | 0.518622 | 3_2:-74611744 | None:intergenic |
| GGAATCACTTTCAACAAGGA+AGG | 0.521539 | 3_2:+74610137 | Msa0424410:CDS |
| AATGAAGATAATTACGTCCT+GGG | 0.523085 | 3_2:-74610360 | None:intergenic |
| TGTGACAAAACATGTGACTT+TGG | 0.528147 | 3_2:+74608172 | Msa0424410:CDS |
| ATGCCAGTAATACAGGCGTT+CGG | 0.530073 | 3_2:+74610429 | Msa0424410:CDS |
| ATCCTTTGGAAATTTACCAA+TGG | 0.534360 | 3_2:-74607709 | None:intergenic |
| TAATTATCTTCATTGTTGGC+GGG | 0.538382 | 3_2:+74610369 | Msa0424410:CDS |
| AGATCTGCCAAATACAAACC+TGG | 0.542194 | 3_2:+74609258 | Msa0424410:CDS |
| CAGCTGGCTAGTCCTAGATT+CGG | 0.543786 | 3_2:+74606001 | Msa0424410:CDS |
| GAACAAGAGTTGGCTTGCAA+TGG | 0.545187 | 3_2:+74608251 | Msa0424410:CDS |
| ATAGTGCACACAAAGCATAT+AGG | 0.545662 | 3_2:+74611466 | Msa0424410:three_prime_UTR |
| CTAACTCTTGGAAGAGGACA+TGG | 0.547182 | 3_2:+74608103 | Msa0424410:intron |
| CAGTTGCAACGTTGATGGCA+TGG | 0.547860 | 3_2:+74611709 | Msa0424410:three_prime_UTR |
| AGAAGCAAAGAAGTGTAAAA+CGG | 0.549023 | 3_2:+74604485 | Msa0424410:five_prime_UTR |
| ATCCATTGGTAAATTTCCAA+AGG | 0.552276 | 3_2:+74607707 | Msa0424410:CDS |
| CACATGATGCAAAATATGCC+AGG | 0.556225 | 3_2:-74611194 | None:intergenic |
| TTGGCTTGCAATGGAGGGCA+AGG | 0.558222 | 3_2:+74608260 | Msa0424410:CDS |
| CTGAAACGCTGCAATGCTGA+AGG | 0.561128 | 3_2:-74606986 | None:intergenic |
| GGACTTGGAAGAAGCTCAGA+GGG | 0.564191 | 3_2:+74611135 | Msa0424410:CDS |
| AAAAGAGAGGGACGAGCCAT+GGG | 0.565367 | 3_2:-74611431 | None:intergenic |
| ATTGTCTTCTAGATCAACAA+TGG | 0.566779 | 3_2:-74611340 | None:intergenic |
| GCTGGTGTTGACAAGAGAAC+TGG | 0.567007 | 3_2:+74609607 | Msa0424410:CDS |
| CGAACCAATGTCACATCTCA+AGG | 0.567079 | 3_2:+74605928 | Msa0424410:CDS |
| TCTCATCCTCGATTCTCAAA+CGG | 0.569444 | 3_2:+74604719 | Msa0424410:CDS |
| CTGAAGGATCTACGACAGCT+GGG | 0.571034 | 3_2:-74606970 | None:intergenic |
| TAGGTCCATTGATTTAGCAA+TGG | 0.572413 | 3_2:-74607515 | None:intergenic |
| AAATGTAGTTTGAAGGCATG+TGG | 0.572855 | 3_2:-74606940 | None:intergenic |
| AAAGTGGACGTCAAATCCAT+TGG | 0.576391 | 3_2:+74607693 | Msa0424410:CDS |
| GTTGTTGGTGATTGACAGGA+GGG | 0.577111 | 3_2:+74607478 | Msa0424410:CDS |
| TCCATGATTTGGAACAGAAG+CGG | 0.577839 | 3_2:-74610067 | None:intergenic |
| AATGAACATTGCGCGTAACA+TGG | 0.578002 | 3_2:+74609654 | Msa0424410:CDS |
| TGATTTGGAACAGAAGCGGC+TGG | 0.579279 | 3_2:-74610063 | None:intergenic |
| TGGTATGAATATCAAACGAC+TGG | 0.579859 | 3_2:+74607906 | Msa0424410:CDS |
| TCGTCGTCCTCGGTCGCTGG+TGG | 0.580101 | 3_2:+74604524 | Msa0424410:five_prime_UTR |
| GGAAGACTTGGCAAATCCAA+AGG | 0.581297 | 3_2:-74611503 | None:intergenic |
| GGTTGATGAATTTCAACAAG+TGG | 0.581420 | 3_2:+74607927 | Msa0424410:CDS |
| GCAGGAGGTTGTTCTGTCAT+CGG | 0.583710 | 3_2:+74607834 | Msa0424410:intron |
| TAACATGGCTCGTGGACTGA+AGG | 0.584097 | 3_2:+74609669 | Msa0424410:CDS |
| GATCTGCCAAATACAAACCT+GGG | 0.586227 | 3_2:+74609259 | Msa0424410:CDS |
| TTGAATCGCACTCAATTGCA+AGG | 0.586661 | 3_2:-74611398 | None:intergenic |
| ATTCAAGAGCAAGCCACCCA+TGG | 0.587329 | 3_2:+74611415 | Msa0424410:three_prime_UTR |
| TGTTGTTGGTGATTGACAGG+AGG | 0.601755 | 3_2:+74607477 | Msa0424410:CDS |
| ATATGCTTTACGATATGAGA+AGG | 0.606299 | 3_2:+74609191 | Msa0424410:CDS |
| TAAATTTCCAAAGGATCAGG+AGG | 0.607951 | 3_2:+74607716 | Msa0424410:CDS |
| AGATCCACCACCAGCGACCG+AGG | 0.611306 | 3_2:-74604531 | None:intergenic |
| TACTGGATATTCTCTGATGT+AGG | 0.612269 | 3_2:-74605968 | None:intergenic |
| CGGCAAGTAAGTGAATATGA+TGG | 0.614988 | 3_2:-74606214 | None:intergenic |
| AAGAGTTGGCTTGCAATGGA+GGG | 0.617235 | 3_2:+74608255 | Msa0424410:CDS |
| AATCAGAACATCCAAACAGT+AGG | 0.619362 | 3_2:+74607958 | Msa0424410:CDS |
| TGGAAAGCATTGTCAAAGGA+CGG | 0.621542 | 3_2:+74610086 | Msa0424410:CDS |
| AGAGAGGGACGAGCCATGGG+TGG | 0.623028 | 3_2:-74611428 | None:intergenic |
| ATTGCGCGTAACATGGCTCG+TGG | 0.624579 | 3_2:+74609661 | Msa0424410:CDS |
| ATCATGGAAAGCATTGTCAA+AGG | 0.625157 | 3_2:+74610082 | Msa0424410:CDS |
| CTGTCAATCACCAACAACAA+AGG | 0.629632 | 3_2:-74607473 | None:intergenic |
| ATCGTACCGTTTGAGAATCG+AGG | 0.631514 | 3_2:-74604725 | None:intergenic |
| TATTCTCTGATGTAGGTCGA+AGG | 0.632119 | 3_2:-74605961 | None:intergenic |
| CGCCATCTTGTGAATCGATG+AGG | 0.633199 | 3_2:-74604634 | None:intergenic |
| ATTGCCTTGAGATGTGACAT+TGG | 0.633767 | 3_2:-74605932 | None:intergenic |
| CTGATGTACCAAGAGGAAAG+TGG | 0.644198 | 3_2:+74607419 | Msa0424410:CDS |
| GTTGGGAATCACTTTCAACA+AGG | 0.663736 | 3_2:+74610133 | Msa0424410:CDS |
| GGACAACATATGAAGAGTCA+CGG | 0.665146 | 3_2:+74610390 | Msa0424410:CDS |
| ACAGAAACTGATGTACCAAG+AGG | 0.673910 | 3_2:+74607412 | Msa0424410:intron |
| AAAGCTGCATTAATTGAACA+GGG | 0.678420 | 3_2:-74609218 | None:intergenic |
| ATGAAGATAATTACGTCCTG+GGG | 0.679958 | 3_2:-74610359 | None:intergenic |
| AGGAATCCAAGACAACAAAG+TGG | 0.684320 | 3_2:+74607677 | Msa0424410:CDS |
| GGGACTTGGAAGAAGCTCAG+AGG | 0.688488 | 3_2:+74611134 | Msa0424410:CDS |
| ATCTGCCAAATACAAACCTG+GGG | 0.695349 | 3_2:+74609260 | Msa0424410:CDS |
| GGTCCATTGATTTAGCAATG+GGG | 0.723808 | 3_2:-74607513 | None:intergenic |
| GGATATACTTCAAACAACAG+AGG | 0.738656 | 3_2:-74611173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGTAACTAAAAAAATA+AGG | + | chr3_2:74604453-74604472 | Msa0424410:five_prime_UTR | 10.0% |
| !!! | TTATTTTTGTCATTTAATTA+CGG | + | chr3_2:74606420-74606439 | Msa0424410:intron | 10.0% |
| !! | TTAAAAAAAATTATGCATAT+AGG | + | chr3_2:74607603-74607622 | Msa0424410:intron | 10.0% |
| !! | TATGATAATAATAATAAACA+TGG | - | chr3_2:74610288-74610307 | None:intergenic | 10.0% |
| !!! | TTTTTTCATTTATGTTTCAA+AGG | + | chr3_2:74605565-74605584 | Msa0424410:intron | 15.0% |
| !!! | TAAATAAATAAGGGTATTAT+AGG | + | chr3_2:74606577-74606596 | Msa0424410:intron | 15.0% |
| !! | ATCAAAATATTAATTTCCTA+GGG | - | chr3_2:74608741-74608760 | None:intergenic | 15.0% |
| !! | AATCAAAATATTAATTTCCT+AGG | - | chr3_2:74608742-74608761 | None:intergenic | 15.0% |
| !!! | ATTTATCTAAGGTTTAAAAT+TGG | - | chr3_2:74609373-74609392 | None:intergenic | 15.0% |
| !!! | GCTTTTTATCTTTATAATAT+TGG | + | chr3_2:74609711-74609730 | Msa0424410:intron | 15.0% |
| !!! | TAAGAAAAATAGTATGTTTT+TGG | + | chr3_2:74609790-74609809 | Msa0424410:intron | 15.0% |
| !!! | GCAATAATGATTTTTATTTT+TGG | + | chr3_2:74610578-74610597 | Msa0424410:intron | 15.0% |
| !! | AAATAACTAAGAACTTATTT+GGG | - | chr3_2:74610885-74610904 | None:intergenic | 15.0% |
| !! | AAAATAACTAAGAACTTATT+TGG | - | chr3_2:74610886-74610905 | None:intergenic | 15.0% |
| !!! | TTTTCTTTATACATATACAT+AGG | - | chr3_2:74611275-74611294 | None:intergenic | 15.0% |
| !! | ATTGTGAATGAAAAATTGAT+AGG | - | chr3_2:74604771-74604790 | None:intergenic | 20.0% |
| !!! | AGTTTGAATTATGATTCTTT+TGG | + | chr3_2:74604808-74604827 | Msa0424410:intron | 20.0% |
| !!! | GTTACTCTTATAATTTTTCT+AGG | - | chr3_2:74605241-74605260 | None:intergenic | 20.0% |
| !! | ATTTATGTTTCAAAGGATTA+GGG | + | chr3_2:74605572-74605591 | Msa0424410:intron | 20.0% |
| !! | CCTCTTCAAAAAAAAAAAAA+AGG | - | chr3_2:74605614-74605633 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTTGAAG+AGG | + | chr3_2:74605611-74605630 | Msa0424410:intron | 20.0% |
| !! | CTAAATATTGCTAGTTATAA+TGG | + | chr3_2:74605653-74605672 | Msa0424410:intron | 20.0% |
| !! | AATTACAAACTCAATTCATA+AGG | - | chr3_2:74606095-74606114 | None:intergenic | 20.0% |
| !! | AAATGACAAAAATAATGAGA+CGG | - | chr3_2:74606415-74606434 | None:intergenic | 20.0% |
| !!! | ATTATTTTGATACTATACAC+TGG | - | chr3_2:74606654-74606673 | None:intergenic | 20.0% |
| !!! | CTGTTTTTTTGACATTAAAA+CGG | + | chr3_2:74607035-74607054 | Msa0424410:CDS | 20.0% |
| !!! | AATCCAATCTATTTGTTATT+TGG | + | chr3_2:74607297-74607316 | Msa0424410:intron | 20.0% |
| !! | CAATCATTAATGATATAAGA+TGG | - | chr3_2:74607348-74607367 | None:intergenic | 20.0% |
| !!! | AAATATTTGAAATTCTCCTT+TGG | + | chr3_2:74608311-74608330 | Msa0424410:intron | 20.0% |
| !! | ATGTTTCTTAGTTTATTTGA+TGG | - | chr3_2:74608366-74608385 | None:intergenic | 20.0% |
| !! | TGTAAATTTCAGAAATTAGA+CGG | - | chr3_2:74608441-74608460 | None:intergenic | 20.0% |
| !! | AAAATATTGCAAAGCTTAAA+AGG | - | chr3_2:74608531-74608550 | None:intergenic | 20.0% |
| !! | ATAACAGATTAACTACAATA+AGG | - | chr3_2:74608693-74608712 | None:intergenic | 20.0% |
| !! | TTTACTCTTATACTTTGTTA+CGG | - | chr3_2:74608867-74608886 | None:intergenic | 20.0% |
| !! | CTAATAACAGATATTATTCA+GGG | - | chr3_2:74608895-74608914 | None:intergenic | 20.0% |
| !! | ACTAATAACAGATATTATTC+AGG | - | chr3_2:74608896-74608915 | None:intergenic | 20.0% |
| !!! | ATAATTTGTTGTGTTAAACA+TGG | - | chr3_2:74608936-74608955 | None:intergenic | 20.0% |
| !! | ACATATAACAACAATTAACA+GGG | - | chr3_2:74609020-74609039 | None:intergenic | 20.0% |
| !! | TACATATAACAACAATTAAC+AGG | - | chr3_2:74609021-74609040 | None:intergenic | 20.0% |
| !!! | TTAATTGTTGTTATATGTAC+TGG | + | chr3_2:74609022-74609041 | Msa0424410:intron | 20.0% |
| !! | TAGGTTATAAAGTAGAAATT+TGG | + | chr3_2:74609447-74609466 | Msa0424410:intron | 20.0% |
| !!! | TGCAAAGTTTTTGTATTTTT+AGG | + | chr3_2:74609845-74609864 | Msa0424410:intron | 20.0% |
| !!! | GCAAAGTTTTTGTATTTTTA+GGG | + | chr3_2:74609846-74609865 | Msa0424410:intron | 20.0% |
| !!! | AAAGGTATAAAAACTGTATA+GGG | + | chr3_2:74609874-74609893 | Msa0424410:intron | 20.0% |
| !! | AATAATTCGATGATTGAATA+TGG | - | chr3_2:74609938-74609957 | None:intergenic | 20.0% |
| !! | CAAATTTGGATATAAATCAT+TGG | - | chr3_2:74610237-74610256 | None:intergenic | 20.0% |
| !! | TTATTATTATCATAGAACTG+TGG | + | chr3_2:74610294-74610313 | Msa0424410:intron | 20.0% |
| !! | CTCATAAAGATAATTTAGAT+TGG | + | chr3_2:74610500-74610519 | Msa0424410:intron | 20.0% |
| !!! | ATTGACAAAAATTTTAGTCA+TGG | + | chr3_2:74610620-74610639 | Msa0424410:intron | 20.0% |
| !!! | AAAAATTTTAGTCATGGTAT+GGG | + | chr3_2:74610626-74610645 | Msa0424410:intron | 20.0% |
| !! | TTATACAAGAAATGGTAAAA+TGG | + | chr3_2:74610740-74610759 | Msa0424410:intron | 20.0% |
| !!! | TTTGAAGTTTGTAAAAGAAA+TGG | - | chr3_2:74610787-74610806 | None:intergenic | 20.0% |
| !! | TATAAAGAAAAAACTGCTAA+AGG | + | chr3_2:74611284-74611303 | Msa0424410:three_prime_UTR | 20.0% |
| !!! | TTTTAGTATACAAAAGAATG+GGG | - | chr3_2:74611601-74611620 | None:intergenic | 20.0% |
| !!! | CTTTTAGTATACAAAAGAAT+GGG | - | chr3_2:74611602-74611621 | None:intergenic | 20.0% |
| !!! | TCTTTTAGTATACAAAAGAA+TGG | - | chr3_2:74611603-74611622 | None:intergenic | 20.0% |
| !!! | ATAATTTTCAAGTTCAGATT+GGG | + | chr3_2:74611649-74611668 | Msa0424410:three_prime_UTR | 20.0% |
| !! | AAATAACACCCAAATTTATT+CGG | - | chr3_2:74611808-74611827 | None:intergenic | 20.0% |
| !!! | TGGGTGTTATTTTTTTTTTA+AGG | + | chr3_2:74611816-74611835 | Msa0424410:three_prime_UTR | 20.0% |
| ! | ATCACGAGTAAATTGTAATT+GGG | + | chr3_2:74604831-74604850 | Msa0424410:intron | 25.0% |
| !! | TTTTCTCAAAGATGAAAACA+CGG | + | chr3_2:74604868-74604887 | Msa0424410:intron | 25.0% |
| ! | TGTTTAAACTATGTAACTTG+TGG | - | chr3_2:74604925-74604944 | None:intergenic | 25.0% |
| ! | TTTAAACATCAAATTCAAGC+TGG | + | chr3_2:74604937-74604956 | Msa0424410:intron | 25.0% |
| !!! | CACTTAATTTATTTTCGTGT+TGG | - | chr3_2:74605081-74605100 | None:intergenic | 25.0% |
| ! | CGAAAATAAATTAAGTGTAG+CGG | + | chr3_2:74605084-74605103 | Msa0424410:intron | 25.0% |
| ! | AGATCTAGATATTAATGAGT+TGG | + | chr3_2:74605270-74605289 | Msa0424410:intron | 25.0% |
| !! | TAAGATTTGGTTGTTGTTAT+TGG | + | chr3_2:74605345-74605364 | Msa0424410:intron | 25.0% |
| !! | AAGATTTGGTTGTTGTTATT+GGG | + | chr3_2:74605346-74605365 | Msa0424410:intron | 25.0% |
| ! | AGTAAATTATCATTGTGAGT+AGG | + | chr3_2:74605374-74605393 | Msa0424410:intron | 25.0% |
| !! | TTTTAAACTACTGTACAGTA+TGG | + | chr3_2:74605515-74605534 | Msa0424410:intron | 25.0% |
| ! | CATTTATGTTTCAAAGGATT+AGG | + | chr3_2:74605571-74605590 | Msa0424410:intron | 25.0% |
| !!! | TACCTGGATTATTTGATTTT+TGG | + | chr3_2:74605767-74605786 | Msa0424410:intron | 25.0% |
| !!! | AGAAGTATTTTTAGTAGAGT+TGG | + | chr3_2:74605883-74605902 | Msa0424410:CDS | 25.0% |
| ! | AACAATTAAAGAACCTACAT+AGG | - | chr3_2:74606036-74606055 | None:intergenic | 25.0% |
| ! | AGAAAACTGTAATTTCAGAA+TGG | - | chr3_2:74606178-74606197 | None:intergenic | 25.0% |
| !! | TTTAAAGTTTGTAGTCTGTA+TGG | + | chr3_2:74606301-74606320 | Msa0424410:intron | 25.0% |
| ! | TAATGAGACGGAATATATAA+GGG | - | chr3_2:74606403-74606422 | None:intergenic | 25.0% |
| ! | ATAATGAGACGGAATATATA+AGG | - | chr3_2:74606404-74606423 | None:intergenic | 25.0% |
| ! | AGTGGAGATGTAAATAAATA+AGG | + | chr3_2:74606567-74606586 | Msa0424410:intron | 25.0% |
| ! | GTGGAGATGTAAATAAATAA+GGG | + | chr3_2:74606568-74606587 | Msa0424410:intron | 25.0% |
| ! | TCATTTATCAGATAAAGAAC+CGG | - | chr3_2:74606756-74606775 | None:intergenic | 25.0% |
| ! | AGCATATAAATGTAGTTTGA+AGG | - | chr3_2:74606950-74606969 | None:intergenic | 25.0% |
| ! | GTTCTTTGATATCTAATAAC+TGG | - | chr3_2:74607064-74607083 | None:intergenic | 25.0% |
| ! | TTATACTTCGATCATTTCTA+TGG | + | chr3_2:74607224-74607243 | Msa0424410:intron | 25.0% |
| ! | TATATCATTAATGATTGTGC+TGG | + | chr3_2:74607351-74607370 | Msa0424410:intron | 25.0% |
| !!! | TTTGTGGTGTTATATTTTAC+AGG | + | chr3_2:74607635-74607654 | Msa0424410:intron | 25.0% |
| !! | TTTTTACTAATTCTTATCGC+AGG | + | chr3_2:74607816-74607835 | Msa0424410:intron | 25.0% |
| !!! | ATACATGTTAGCTTTGAAAA+AGG | - | chr3_2:74607869-74607888 | None:intergenic | 25.0% |
| !!! | TTAGTTCTTTCTTTTTGATG+CGG | + | chr3_2:74608793-74608812 | Msa0424410:intron | 25.0% |
| ! | ATTTCCAACAATATGAGTTA+AGG | + | chr3_2:74608833-74608852 | Msa0424410:intron | 25.0% |
| ! | AATTCATGCGTAAGAATATA+TGG | - | chr3_2:74609317-74609336 | None:intergenic | 25.0% |
| ! | AAATTGGAAAACATCCATTA+AGG | - | chr3_2:74609357-74609376 | None:intergenic | 25.0% |
| ! | AAACCTTAGATAAATAGTAG+TGG | + | chr3_2:74609378-74609397 | Msa0424410:intron | 25.0% |
| ! | AACCTTAGATAAATAGTAGT+GGG | + | chr3_2:74609379-74609398 | Msa0424410:intron | 25.0% |
| ! | ATTTAAGAACAGCATTTAGA+TGG | + | chr3_2:74609488-74609507 | Msa0424410:intron | 25.0% |
| !! | CAAAGGTATAAAAACTGTAT+AGG | + | chr3_2:74609873-74609892 | Msa0424410:intron | 25.0% |
| ! | TCAATATTGTCAAACTTTAC+AGG | + | chr3_2:74609904-74609923 | Msa0424410:intron | 25.0% |
| ! | CAATATTGTCAAACTTTACA+GGG | + | chr3_2:74609905-74609924 | Msa0424410:intron | 25.0% |
| ! | TTATATTTGTGAACTTCTAG+AGG | + | chr3_2:74610194-74610213 | Msa0424410:intron | 25.0% |
| ! | AATAATAAACATGGAGAAAC+AGG | - | chr3_2:74610279-74610298 | None:intergenic | 25.0% |
| !! | TAAAATTTTTGTCAATAGCC+TGG | - | chr3_2:74610616-74610635 | None:intergenic | 25.0% |
| !!! | CAAAAATTTTAGTCATGGTA+TGG | + | chr3_2:74610625-74610644 | Msa0424410:intron | 25.0% |
| !! | TGTAAATGATGTGACATTTT+TGG | - | chr3_2:74610699-74610718 | None:intergenic | 25.0% |
| ! | CCATTTCTTGTATAAGTATT+TGG | - | chr3_2:74610735-74610754 | None:intergenic | 25.0% |
| ! | CCAAATACTTATACAAGAAA+TGG | + | chr3_2:74610732-74610751 | Msa0424410:intron | 25.0% |
| !!! | AACTTATTTGGGTTGAAAAA+CGG | - | chr3_2:74610874-74610893 | None:intergenic | 25.0% |
| !!! | TTACGCTTGTTTTTATTGAT+TGG | + | chr3_2:74611003-74611022 | Msa0424410:intron | 25.0% |
| !!! | CATAATTTTCAAGTTCAGAT+TGG | + | chr3_2:74611648-74611667 | Msa0424410:three_prime_UTR | 25.0% |
| ! | AGAAGCAAAGAAGTGTAAAA+CGG | + | chr3_2:74604485-74604504 | Msa0424410:five_prime_UTR | 30.0% |
| GATCACGAGTAAATTGTAAT+TGG | + | chr3_2:74604830-74604849 | Msa0424410:intron | 30.0% | |
| TCACGAGTAAATTGTAATTG+GGG | + | chr3_2:74604832-74604851 | Msa0424410:intron | 30.0% | |
| GACAACATTATAGAGAGTTT+AGG | + | chr3_2:74605145-74605164 | Msa0424410:intron | 30.0% | |
| ! | ATGAGTTGGATACAACATTA+TGG | + | chr3_2:74605284-74605303 | Msa0424410:intron | 30.0% |
| ! | ACATTGTTTTCTTTCGACAA+TGG | + | chr3_2:74605474-74605493 | Msa0424410:intron | 30.0% |
| ! | GGATTAGGGAAAATATTTTG+AGG | + | chr3_2:74605586-74605605 | Msa0424410:intron | 30.0% |
| ! | TTAGAAGCCTCGTAATATTT+TGG | - | chr3_2:74605637-74605656 | None:intergenic | 30.0% |
| AGCCAAAAATCAAATAATCC+AGG | - | chr3_2:74605772-74605791 | None:intergenic | 30.0% | |
| !!! | ATTTTTGGCTGTTGTTGATA+AGG | + | chr3_2:74605782-74605801 | Msa0424410:intron | 30.0% |
| ! | AGTTTTCTCCAACATATTGA+AGG | + | chr3_2:74606190-74606209 | Msa0424410:intron | 30.0% |
| AATTCTCATGAAACATGTTC+CGG | + | chr3_2:74606680-74606699 | Msa0424410:intron | 30.0% | |
| AATTAGAATACCCTTCTATC+CGG | - | chr3_2:74606702-74606721 | None:intergenic | 30.0% | |
| TAGAAAAGGTCACAATTATG+TGG | - | chr3_2:74606725-74606744 | None:intergenic | 30.0% | |
| ! | ATTTGAGATTGCAACACAAA+GGG | - | chr3_2:74606816-74606835 | None:intergenic | 30.0% |
| ATGTGGAAAGTGAAATGATA+AGG | - | chr3_2:74606926-74606945 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTTTTGCAATGT+CGG | - | chr3_2:74607089-74607108 | None:intergenic | 30.0% |
| AAAATACAAGTTAGACAAGG+TGG | - | chr3_2:74607135-74607154 | None:intergenic | 30.0% | |
| CACAAAATACAAGTTAGACA+AGG | - | chr3_2:74607138-74607157 | None:intergenic | 30.0% | |
| !! | CTTGTCTAACTTGTATTTTG+TGG | + | chr3_2:74607136-74607155 | Msa0424410:intron | 30.0% |
| TTCTGAATTGCATAATGCAT+TGG | + | chr3_2:74607247-74607266 | Msa0424410:intron | 30.0% | |
| TCTGAATTGCATAATGCATT+GGG | + | chr3_2:74607248-74607267 | Msa0424410:intron | 30.0% | |
| CAGCCAAATAACAAATAGAT+TGG | - | chr3_2:74607303-74607322 | None:intergenic | 30.0% | |
| !! | CAATCTATTTGTTATTTGGC+TGG | + | chr3_2:74607301-74607320 | Msa0424410:intron | 30.0% |
| ! | TCTTTTCGATTTTAGACGAA+TGG | + | chr3_2:74607442-74607461 | Msa0424410:CDS | 30.0% |
| TAATTTCACTGATACCTGAT+AGG | - | chr3_2:74607537-74607556 | None:intergenic | 30.0% | |
| ATATAGGTAATGCTCATTTG+TGG | + | chr3_2:74607619-74607638 | Msa0424410:intron | 30.0% | |
| ! | GTGTTATATTTTACAGGCTA+TGG | + | chr3_2:74607641-74607660 | Msa0424410:intron | 30.0% |
| ATCCATTGGTAAATTTCCAA+AGG | + | chr3_2:74607707-74607726 | Msa0424410:CDS | 30.0% | |
| ! | ATCCTTTGGAAATTTACCAA+TGG | - | chr3_2:74607712-74607731 | None:intergenic | 30.0% |
| GCTAACATGTATGAGAATTT+CGG | + | chr3_2:74607877-74607896 | Msa0424410:CDS | 30.0% | |
| TATGAGAATTTCGGAGATAT+TGG | + | chr3_2:74607886-74607905 | Msa0424410:CDS | 30.0% | |
| ! | AAAAGTACAAACCTACTGTT+TGG | - | chr3_2:74607972-74607991 | None:intergenic | 30.0% |
| CAAGAGTTAGATCATGAAAT+CGG | - | chr3_2:74608093-74608112 | None:intergenic | 30.0% | |
| CATTGGTACTAGTAAATAAC+TGG | - | chr3_2:74608390-74608409 | None:intergenic | 30.0% | |
| !! | TTCAAATGCTTTTTACTGGT+GGG | - | chr3_2:74608485-74608504 | None:intergenic | 30.0% |
| !! | TTCCTTCAAATGCTTTTTAC+TGG | - | chr3_2:74608489-74608508 | None:intergenic | 30.0% |
| CAGATTAACTACAATAAGGA+TGG | - | chr3_2:74608689-74608708 | None:intergenic | 30.0% | |
| GTTAATCTGTTATCTGTCTT+CGG | + | chr3_2:74608700-74608719 | Msa0424410:intron | 30.0% | |
| ! | TAGTTCTTTCTTTTTGATGC+GGG | + | chr3_2:74608794-74608813 | Msa0424410:intron | 30.0% |
| TTGTCCTTAACTCATATTGT+TGG | - | chr3_2:74608840-74608859 | None:intergenic | 30.0% | |
| AACAATATGAGTTAAGGACA+AGG | + | chr3_2:74608839-74608858 | Msa0424410:intron | 30.0% | |
| !!! | TTATTTTTATCCAACCGACA+TGG | + | chr3_2:74608974-74608993 | Msa0424410:intron | 30.0% |
| TGAGTGATAAGTGATAACTT+TGG | + | chr3_2:74609082-74609101 | Msa0424410:intron | 30.0% | |
| ! | CAATGAAAGCATATCAGATA+TGG | + | chr3_2:74609146-74609165 | Msa0424410:CDS | 30.0% |
| ATATGCTTTACGATATGAGA+AGG | + | chr3_2:74609191-74609210 | Msa0424410:CDS | 30.0% | |
| AAAGCTGCATTAATTGAACA+GGG | - | chr3_2:74609221-74609240 | None:intergenic | 30.0% | |
| AAAAGCTGCATTAATTGAAC+AGG | - | chr3_2:74609222-74609241 | None:intergenic | 30.0% | |
| ACCTTAGATAAATAGTAGTG+GGG | + | chr3_2:74609380-74609399 | Msa0424410:intron | 30.0% | |
| !!! | TGATTTTGCTGCTTTTGATA+TGG | + | chr3_2:74609512-74609531 | Msa0424410:intron | 30.0% |
| !!! | TGTATTTTTAGGGACTACAA+AGG | + | chr3_2:74609856-74609875 | Msa0424410:intron | 30.0% |
| TATAAAAACTGTATAGGGAC+TGG | + | chr3_2:74609879-74609898 | Msa0424410:intron | 30.0% | |
| ! | TCGATGATTGAATATGGTTT+TGG | - | chr3_2:74609932-74609951 | None:intergenic | 30.0% |
| AATAATCTGAGTTGTGAAAC+TGG | + | chr3_2:74610317-74610336 | Msa0424410:intron | 30.0% | |
| AATGAAGATAATTACGTCCT+GGG | - | chr3_2:74610363-74610382 | None:intergenic | 30.0% | |
| GACGTAATTATCTTCATTGT+TGG | + | chr3_2:74610365-74610384 | Msa0424410:CDS | 30.0% | |
| GTAATTATCTTCATTGTTGG+CGG | + | chr3_2:74610368-74610387 | Msa0424410:CDS | 30.0% | |
| TAATTATCTTCATTGTTGGC+GGG | + | chr3_2:74610369-74610388 | Msa0424410:CDS | 30.0% | |
| CTTCTGTTCTTAATTCGAAA+AGG | + | chr3_2:74610468-74610487 | Msa0424410:CDS | 30.0% | |
| ! | AAGTGAAAGTACAGTTTGAA+AGG | - | chr3_2:74610548-74610567 | None:intergenic | 30.0% |
| TTCAAACTGTACTTTCACTT+TGG | + | chr3_2:74610548-74610567 | Msa0424410:intron | 30.0% | |
| !! | TTTTGGAAATTGATAGTTCC+AGG | + | chr3_2:74610595-74610614 | Msa0424410:intron | 30.0% |
| TTTGGGCGATAAAGTTTATT+GGG | + | chr3_2:74610943-74610962 | Msa0424410:intron | 30.0% | |
| ACAAAATCTTTCAATCTGCA+AGG | - | chr3_2:74610984-74611003 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTATTGATTGGTCC+TGG | + | chr3_2:74611009-74611028 | Msa0424410:intron | 30.0% |
| !! | TGTTTTTATTGATTGGTCCT+GGG | + | chr3_2:74611010-74611029 | Msa0424410:intron | 30.0% |
| ! | ATTTTGGATTCTTAGAACAG+AGG | + | chr3_2:74611083-74611102 | Msa0424410:intron | 30.0% |
| ATTGTCTTCTAGATCAACAA+TGG | - | chr3_2:74611343-74611362 | None:intergenic | 30.0% | |
| TTAGCACCTAAATTGATCAA+TGG | - | chr3_2:74611372-74611391 | None:intergenic | 30.0% | |
| TGATCAATTTAGGTGCTAAT+CGG | + | chr3_2:74611373-74611392 | Msa0424410:three_prime_UTR | 30.0% | |
| TTTCTCGAGAAAAAAAGAGA+GGG | - | chr3_2:74611446-74611465 | None:intergenic | 30.0% | |
| ! | TTTTCTCGAGAAAAAAAGAG+AGG | - | chr3_2:74611447-74611466 | None:intergenic | 30.0% |
| TTGTCTTCACCGAATAAATT+TGG | + | chr3_2:74611796-74611815 | Msa0424410:three_prime_UTR | 30.0% | |
| TGTCTTCACCGAATAAATTT+GGG | + | chr3_2:74611797-74611816 | Msa0424410:three_prime_UTR | 30.0% | |
| ! | CGCATTTTACAAGACATATC+TGG | + | chr3_2:74604687-74604706 | Msa0424410:CDS | 35.0% |
| ! | GATAGGATTTGATAGCATTG+TGG | - | chr3_2:74604754-74604773 | None:intergenic | 35.0% |
| CACGAGTAAATTGTAATTGG+GGG | + | chr3_2:74604833-74604852 | Msa0424410:intron | 35.0% | |
| AGTAAATTGTAATTGGGGGT+GGG | + | chr3_2:74604837-74604856 | Msa0424410:intron | 35.0% | |
| AAACATCAAATTCAAGCTGG+TGG | + | chr3_2:74604940-74604959 | Msa0424410:intron | 35.0% | |
| CATATCACATAAAACACCCA+AGG | - | chr3_2:74604982-74605001 | None:intergenic | 35.0% | |
| TTTAGGTACTTTGTGCATGT+TGG | + | chr3_2:74605162-74605181 | Msa0424410:intron | 35.0% | |
| TTAGGTACTTTGTGCATGTT+GGG | + | chr3_2:74605163-74605182 | Msa0424410:intron | 35.0% | |
| AGTCAAATCACTAGAGACAA+AGG | + | chr3_2:74605211-74605230 | Msa0424410:intron | 35.0% | |
| CTACTTAGTGGGATAAGATT+TGG | + | chr3_2:74605332-74605351 | Msa0424410:intron | 35.0% | |
| CTGCCTTCGTTAATTTCTTA+CGG | + | chr3_2:74605430-74605449 | Msa0424410:intron | 35.0% | |
| GTTCCGTAAGAAATTAACGA+AGG | - | chr3_2:74605436-74605455 | None:intergenic | 35.0% | |
| ! | TGTTTTCTTTCGACAATGGA+TGG | + | chr3_2:74605478-74605497 | Msa0424410:intron | 35.0% |
| CTTGTAAAGCTATTACCTGT+GGG | + | chr3_2:74605711-74605730 | Msa0424410:intron | 35.0% | |
| ! | CTATTACCTGTGGGTTATAT+TGG | + | chr3_2:74605720-74605739 | Msa0424410:intron | 35.0% |
| AAGATACCATTGTAACTTGG+TGG | + | chr3_2:74605744-74605763 | Msa0424410:intron | 35.0% | |
| TACTGGATATTCTCTGATGT+AGG | - | chr3_2:74605971-74605990 | None:intergenic | 35.0% | |
| ATGATGGTCCTTCAATATGT+TGG | - | chr3_2:74606201-74606220 | None:intergenic | 35.0% | |
| ! | TATTCACTTACTTGCCGATT+CGG | + | chr3_2:74606220-74606239 | Msa0424410:CDS | 35.0% |
| AATACGGACAATGTAGTCAA+AGG | - | chr3_2:74606504-74606523 | None:intergenic | 35.0% | |
| TACATTGTCCGTATTGTAGT+AGG | + | chr3_2:74606509-74606528 | Msa0424410:intron | 35.0% | |
| ACCAAACTCCTACTACAATA+CGG | - | chr3_2:74606520-74606539 | None:intergenic | 35.0% | |
| ! | GACCTTTTCTATTTACTGTC+CGG | + | chr3_2:74606734-74606753 | Msa0424410:intron | 35.0% |
| AACCGGACAGTAAATAGAAA+AGG | - | chr3_2:74606739-74606758 | None:intergenic | 35.0% | |
| ! | CATTTGAGATTGCAACACAA+AGG | - | chr3_2:74606817-74606836 | None:intergenic | 35.0% |
| TGTGTTGCAATCTCAAATGA+TGG | + | chr3_2:74606818-74606837 | Msa0424410:intron | 35.0% | |
| GTGTTGCAATCTCAAATGAT+GGG | + | chr3_2:74606819-74606838 | Msa0424410:intron | 35.0% | |
| ! | AAATGTAGTTTGAAGGCATG+TGG | - | chr3_2:74606943-74606962 | None:intergenic | 35.0% |
| !!! | GATGTTGCATTTTAGCTACT+TGG | + | chr3_2:74607175-74607194 | Msa0424410:intron | 35.0% |
| TGATATAAGATGGCATGTTG+TGG | - | chr3_2:74607338-74607357 | None:intergenic | 35.0% | |
| TAACCCCATTGCTAAATCAA+TGG | + | chr3_2:74607510-74607529 | Msa0424410:CDS | 35.0% | |
| !! | AGGTCCATTGATTTAGCAAT+GGG | - | chr3_2:74607517-74607536 | None:intergenic | 35.0% |
| !! | TAGGTCCATTGATTTAGCAA+TGG | - | chr3_2:74607518-74607537 | None:intergenic | 35.0% |
| GCTATGGTTCATGAATTGAT+AGG | + | chr3_2:74607657-74607676 | Msa0424410:CDS | 35.0% | |
| TGGTAAATTTCCAAAGGATC+AGG | + | chr3_2:74607713-74607732 | Msa0424410:CDS | 35.0% | |
| TAAATTTCCAAAGGATCAGG+AGG | + | chr3_2:74607716-74607735 | Msa0424410:CDS | 35.0% | |
| TTGGATACATTTCTTGCACT+GGG | + | chr3_2:74607739-74607758 | Msa0424410:intron | 35.0% | |
| TTACTAATTCTTATCGCAGG+AGG | + | chr3_2:74607819-74607838 | Msa0424410:intron | 35.0% | |
| TGGTATGAATATCAAACGAC+TGG | + | chr3_2:74607906-74607925 | Msa0424410:CDS | 35.0% | |
| !! | GGTTGATGAATTTCAACAAG+TGG | + | chr3_2:74607927-74607946 | Msa0424410:CDS | 35.0% |
| AATCAGAACATCCAAACAGT+AGG | + | chr3_2:74607958-74607977 | Msa0424410:CDS | 35.0% | |
| TCATAACTGTAACAGCTGAA+AGG | - | chr3_2:74608024-74608043 | None:intergenic | 35.0% | |
| CGATTTCATGATCTAACTCT+TGG | + | chr3_2:74608091-74608110 | Msa0424410:intron | 35.0% | |
| AGGGTAGTTGTCAACAAATT+TGG | - | chr3_2:74608129-74608148 | None:intergenic | 35.0% | |
| ! | CATGCATTTTTCTGTACTCA+GGG | - | chr3_2:74608148-74608167 | None:intergenic | 35.0% |
| CTGAGTACAGAAAAATGCAT+GGG | + | chr3_2:74608147-74608166 | Msa0424410:CDS | 35.0% | |
| TGTGACAAAACATGTGACTT+TGG | + | chr3_2:74608172-74608191 | Msa0424410:CDS | 35.0% | |
| TTCACAAACAGAACAAGAGT+TGG | + | chr3_2:74608241-74608260 | Msa0424410:CDS | 35.0% | |
| !! | TAACTTTTGAGAACAGCCAA+AGG | - | chr3_2:74608330-74608349 | None:intergenic | 35.0% |
| CATAGTGACATTACTGACAT+TGG | - | chr3_2:74608407-74608426 | None:intergenic | 35.0% | |
| !! | TCAAATGCTTTTTACTGGTG+GGG | - | chr3_2:74608484-74608503 | None:intergenic | 35.0% |
| !! | CTTCAAATGCTTTTTACTGG+TGG | - | chr3_2:74608486-74608505 | None:intergenic | 35.0% |
| !! | CACCAGTAAAAAGCATTTGA+AGG | + | chr3_2:74608484-74608503 | Msa0424410:intron | 35.0% |
| TTGCTGTAGCAGCATTTATT+GGG | + | chr3_2:74608587-74608606 | Msa0424410:intron | 35.0% | |
| !! | AGTGCTGATATTTGTTCGAA+AGG | + | chr3_2:74608658-74608677 | Msa0424410:intron | 35.0% |
| ! | AGTTCTTTCTTTTTGATGCG+GGG | + | chr3_2:74608795-74608814 | Msa0424410:intron | 35.0% |
| ! | AGAGTTGCATTTTTCCATGT+CGG | - | chr3_2:74608991-74609010 | None:intergenic | 35.0% |
| ATTTACCCCAGGTTTGTATT+TGG | - | chr3_2:74609268-74609287 | None:intergenic | 35.0% | |
| CAACAGTTTAAATTTACCCC+AGG | - | chr3_2:74609279-74609298 | None:intergenic | 35.0% | |
| TTAAGGATTAAGAGACGTTC+AGG | - | chr3_2:74609340-74609359 | None:intergenic | 35.0% | |
| GAACGTCTCTTAATCCTTAA+TGG | + | chr3_2:74609340-74609359 | Msa0424410:intron | 35.0% | |
| CCTTAGATAAATAGTAGTGG+GGG | + | chr3_2:74609381-74609400 | Msa0424410:intron | 35.0% | |
| ! | TAGTGGGGGTGAAATTATTT+TGG | + | chr3_2:74609395-74609414 | Msa0424410:intron | 35.0% |
| ! | AGTGGGGGTGAAATTATTTT+GGG | + | chr3_2:74609396-74609415 | Msa0424410:intron | 35.0% |
| AAGAGAACTGGTGATCTTTA+TGG | + | chr3_2:74609619-74609638 | Msa0424410:CDS | 35.0% | |
| !! | TTGATTTGAGTTTTGCTGCA+GGG | + | chr3_2:74610016-74610035 | Msa0424410:intron | 35.0% |
| TGACAATGCTTTCCATGATT+TGG | - | chr3_2:74610081-74610100 | None:intergenic | 35.0% | |
| !! | ATCATGGAAAGCATTGTCAA+AGG | + | chr3_2:74610082-74610101 | Msa0424410:CDS | 35.0% |
| ATGTAGACTACCCATTTGTT+GGG | + | chr3_2:74610116-74610135 | Msa0424410:CDS | 35.0% | |
| GAAAGTGATTCCCAACAAAT+GGG | - | chr3_2:74610129-74610148 | None:intergenic | 35.0% | |
| TGAAAGTGATTCCCAACAAA+TGG | - | chr3_2:74610130-74610149 | None:intergenic | 35.0% | |
| ATGTAGTGGCATCACAAATT+TGG | - | chr3_2:74610251-74610270 | None:intergenic | 35.0% | |
| ATGAAGATAATTACGTCCTG+GGG | - | chr3_2:74610362-74610381 | None:intergenic | 35.0% | |
| CAATGAAGATAATTACGTCC+TGG | - | chr3_2:74610364-74610383 | None:intergenic | 35.0% | |
| CTACAAAATGCCAGTAATAC+AGG | + | chr3_2:74610422-74610441 | Msa0424410:CDS | 35.0% | |
| CAAGAAATGGTAAAATGGCA+TGG | + | chr3_2:74610745-74610764 | Msa0424410:intron | 35.0% | |
| GTTAGTCATTGTCATTGTCA+TGG | + | chr3_2:74610920-74610939 | Msa0424410:intron | 35.0% | |
| TCATTGTCATTGTCATGGTT+TGG | + | chr3_2:74610925-74610944 | Msa0424410:intron | 35.0% | |
| CATTGTCATTGTCATGGTTT+GGG | + | chr3_2:74610926-74610945 | Msa0424410:intron | 35.0% | |
| GTTTGGGCGATAAAGTTTAT+TGG | + | chr3_2:74610942-74610961 | Msa0424410:intron | 35.0% | |
| !!! | GGTTTACTTTTTGAACTTGC+AGG | + | chr3_2:74611104-74611123 | Msa0424410:intron | 35.0% |
| ! | TTTGAACTTGCAGGTTTTTC+AGG | + | chr3_2:74611113-74611132 | Msa0424410:intron | 35.0% |
| ! | TTGAACTTGCAGGTTTTTCA+GGG | + | chr3_2:74611114-74611133 | Msa0424410:intron | 35.0% |
| GGATATACTTCAAACAACAG+AGG | - | chr3_2:74611176-74611195 | None:intergenic | 35.0% | |
| ! | CTGTTGTTTGAAGTATATCC+TGG | + | chr3_2:74611176-74611195 | Msa0424410:exon | 35.0% |
| ! | ATAGTTTTTACGACAGCTTC+AGG | + | chr3_2:74611229-74611248 | Msa0424410:three_prime_UTR | 35.0% |
| !!! | AGGCTGGGAATTTTAGTTTT+GGG | + | chr3_2:74611249-74611268 | Msa0424410:three_prime_UTR | 35.0% |
| CACCAACCATTGATCAATTT+AGG | + | chr3_2:74611363-74611382 | Msa0424410:three_prime_UTR | 35.0% | |
| CACCTAAATTGATCAATGGT+TGG | - | chr3_2:74611368-74611387 | None:intergenic | 35.0% | |
| ATAGTGCACACAAAGCATAT+AGG | + | chr3_2:74611466-74611485 | Msa0424410:three_prime_UTR | 35.0% | |
| GGTACAATGAAAGAAACCTT+TGG | + | chr3_2:74611487-74611506 | Msa0424410:three_prime_UTR | 35.0% | |
| ! | CTAGATTAGCCAAAAGATGA+TGG | - | chr3_2:74611527-74611546 | None:intergenic | 35.0% |
| !! | CTTTTGGCTAATCTAGTATC+AGG | + | chr3_2:74611531-74611550 | Msa0424410:three_prime_UTR | 35.0% |
| !!! | GTATCAGGTTTTATTGACAC+TGG | + | chr3_2:74611546-74611565 | Msa0424410:three_prime_UTR | 35.0% |
| TGAAGCAGTGAATCTACAAA+TGG | - | chr3_2:74611630-74611649 | None:intergenic | 35.0% | |
| AAGTGTAAAACGGTGCGTTA+AGG | + | chr3_2:74604495-74604514 | Msa0424410:five_prime_UTR | 40.0% | |
| AGAAGAAGGTTTCAGAGTTG+AGG | - | chr3_2:74604575-74604594 | None:intergenic | 40.0% | |
| CGAGAAGAAGAAGAAGAAGA+AGG | - | chr3_2:74604589-74604608 | None:intergenic | 40.0% | |
| !! | TTCCTCATCGATTCACAAGA+TGG | + | chr3_2:74604632-74604651 | Msa0424410:exon | 40.0% |
| ACAAGACATATCTGGCATGA+AGG | + | chr3_2:74604695-74604714 | Msa0424410:CDS | 40.0% | |
| TCTCATCCTCGATTCTCAAA+CGG | + | chr3_2:74604719-74604738 | Msa0424410:CDS | 40.0% | |
| GAGTAAATTGTAATTGGGGG+TGG | + | chr3_2:74604836-74604855 | Msa0424410:intron | 40.0% | |
| ATTCAAGCTGGTGGTTGAAA+TGG | + | chr3_2:74604949-74604968 | Msa0424410:intron | 40.0% | |
| TTCAAGCTGGTGGTTGAAAT+GGG | + | chr3_2:74604950-74604969 | Msa0424410:intron | 40.0% | |
| TGTTGTATGAGACAGAGTGT+TGG | + | chr3_2:74605032-74605051 | Msa0424410:intron | 40.0% | |
| ! | GTTGTATGAGACAGAGTGTT+GGG | + | chr3_2:74605033-74605052 | Msa0424410:intron | 40.0% |
| ! | AATTAAGTGTAGCGGAGATG+AGG | + | chr3_2:74605092-74605111 | Msa0424410:intron | 40.0% |
| ! | GGATGTTGCATTGATGTGAT+AGG | + | chr3_2:74605113-74605132 | Msa0424410:intron | 40.0% |
| ACTAAGTAGAGTATGCTGCA+AGG | - | chr3_2:74605321-74605340 | None:intergenic | 40.0% | |
| TTGCAGCATACTCTACTTAG+TGG | + | chr3_2:74605320-74605339 | Msa0424410:intron | 40.0% | |
| TGCAGCATACTCTACTTAGT+GGG | + | chr3_2:74605321-74605340 | Msa0424410:intron | 40.0% | |
| GAAGAGGCCAAAATATTACG+AGG | + | chr3_2:74605627-74605646 | Msa0424410:intron | 40.0% | |
| GCTTGTAAAGCTATTACCTG+TGG | + | chr3_2:74605710-74605729 | Msa0424410:intron | 40.0% | |
| ATCTTGCCAATATAACCCAC+AGG | - | chr3_2:74605729-74605748 | None:intergenic | 40.0% | |
| GGCAAGATACCATTGTAACT+TGG | + | chr3_2:74605741-74605760 | Msa0424410:intron | 40.0% | |
| ! | TTTTTCCCTCGAATTTTCGC+AGG | + | chr3_2:74605814-74605833 | Msa0424410:intron | 40.0% |
| ACTTACCTGCGAAAATTCGA+GGG | - | chr3_2:74605822-74605841 | None:intergenic | 40.0% | |
| TACTTACCTGCGAAAATTCG+AGG | - | chr3_2:74605823-74605842 | None:intergenic | 40.0% | |
| ATTGCCTTGAGATGTGACAT+TGG | - | chr3_2:74605935-74605954 | None:intergenic | 40.0% | |
| TATTCTCTGATGTAGGTCGA+AGG | - | chr3_2:74605964-74605983 | None:intergenic | 40.0% | |
| AGGTGATATTCTCCGAATCT+AGG | - | chr3_2:74606016-74606035 | None:intergenic | 40.0% | |
| TCGGAGAATATCACCTATGT+AGG | + | chr3_2:74606020-74606039 | Msa0424410:intron | 40.0% | |
| CGGCAAGTAAGTGAATATGA+TGG | - | chr3_2:74606217-74606236 | None:intergenic | 40.0% | |
| AACTTCCTGTTCATCCGAAT+CGG | - | chr3_2:74606237-74606256 | None:intergenic | 40.0% | |
| AAGTTCAGGTAACTGCTCAT+GGG | + | chr3_2:74606264-74606283 | Msa0424410:intron | 40.0% | |
| GAGACGGAATATATAAGGGT+TGG | - | chr3_2:74606399-74606418 | None:intergenic | 40.0% | |
| TCCGTATTGTAGTAGGAGTT+TGG | + | chr3_2:74606516-74606535 | Msa0424410:intron | 40.0% | |
| GTATTGTAGTAGGAGTTTGG+TGG | + | chr3_2:74606519-74606538 | Msa0424410:intron | 40.0% | |
| TGAAACATGTTCCGGATAGA+AGG | + | chr3_2:74606688-74606707 | Msa0424410:intron | 40.0% | |
| GAAACATGTTCCGGATAGAA+GGG | + | chr3_2:74606689-74606708 | Msa0424410:intron | 40.0% | |
| ATAGTACTCCTGGATGATCA+GGG | - | chr3_2:74606882-74606901 | None:intergenic | 40.0% | |
| !!! | CATTTTAGCTACTTGGTCGA+TGG | + | chr3_2:74607182-74607201 | Msa0424410:intron | 40.0% |
| ACAGAAACTGATGTACCAAG+AGG | + | chr3_2:74607412-74607431 | Msa0424410:intron | 40.0% | |
| ! | GGAAGTTTCTCCTTTGTTGT+TGG | + | chr3_2:74607463-74607482 | Msa0424410:CDS | 40.0% |
| CTGTCAATCACCAACAACAA+AGG | - | chr3_2:74607476-74607495 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGGTGATTGAC+AGG | + | chr3_2:74607474-74607493 | Msa0424410:CDS | 40.0% |
| TGATTTAGCAATGGGGTTAC+AGG | - | chr3_2:74607509-74607528 | None:intergenic | 40.0% | |
| !! | GGTCCATTGATTTAGCAATG+GGG | - | chr3_2:74607516-74607535 | None:intergenic | 40.0% |
| GCTAAATCAATGGACCTATC+AGG | + | chr3_2:74607520-74607539 | Msa0424410:CDS | 40.0% | |
| AGGAATCCAAGACAACAAAG+TGG | + | chr3_2:74607677-74607696 | Msa0424410:CDS | 40.0% | |
| AAAGTGGACGTCAAATCCAT+TGG | + | chr3_2:74607693-74607712 | Msa0424410:CDS | 40.0% | |
| GTTGGATACATTTCTTGCAC+TGG | + | chr3_2:74607738-74607757 | Msa0424410:intron | 40.0% | |
| CATGATCTAACTCTTGGAAG+AGG | + | chr3_2:74608097-74608116 | Msa0424410:intron | 40.0% | |
| ! | CCATGCATTTTTCTGTACTC+AGG | - | chr3_2:74608149-74608168 | None:intergenic | 40.0% |
| CCTGAGTACAGAAAAATGCA+TGG | + | chr3_2:74608146-74608165 | Msa0424410:CDS | 40.0% | |
| ! | CTTGCTGTAGCAGCATTTAT+TGG | + | chr3_2:74608586-74608605 | Msa0424410:intron | 40.0% |
| TGCTGTAGCAGCATTTATTG+GGG | + | chr3_2:74608588-74608607 | Msa0424410:intron | 40.0% | |
| GAAACTCTACATTGTTCCCT+AGG | + | chr3_2:74608722-74608741 | Msa0424410:intron | 40.0% | |
| ! | TTGCATTTTTCCATGTCGGT+TGG | - | chr3_2:74608987-74609006 | None:intergenic | 40.0% |
| GTCTCTATGCACTCATTTAC+AGG | + | chr3_2:74609104-74609123 | Msa0424410:intron | 40.0% | |
| TCTATGCACTCATTTACAGG+CGG | + | chr3_2:74609107-74609126 | Msa0424410:intron | 40.0% | |
| AGATATGGACAGACTACGTT+TGG | + | chr3_2:74609161-74609180 | Msa0424410:CDS | 40.0% | |
| AGGTTTGTATTTGGCAGATC+TGG | - | chr3_2:74609259-74609278 | None:intergenic | 40.0% | |
| AGATCTGCCAAATACAAACC+TGG | + | chr3_2:74609258-74609277 | Msa0424410:CDS | 40.0% | |
| GATCTGCCAAATACAAACCT+GGG | + | chr3_2:74609259-74609278 | Msa0424410:CDS | 40.0% | |
| ATCTGCCAAATACAAACCTG+GGG | + | chr3_2:74609260-74609279 | Msa0424410:CDS | 40.0% | |
| CCCCCACTACTATTTATCTA+AGG | - | chr3_2:74609384-74609403 | None:intergenic | 40.0% | |
| !!! | TGTCCAGTTTCTTTTGAAGC+AGG | + | chr3_2:74609585-74609604 | Msa0424410:CDS | 40.0% |
| AATGAACATTGCGCGTAACA+TGG | + | chr3_2:74609654-74609673 | Msa0424410:CDS | 40.0% | |
| ! | GCACTTTTAGTCCCATGTAA+GGG | - | chr3_2:74609828-74609847 | None:intergenic | 40.0% |
| ! | TGCACTTTTAGTCCCATGTA+AGG | - | chr3_2:74609829-74609848 | None:intergenic | 40.0% |
| TCAAGCATATGATGCTACAG+TGG | - | chr3_2:74609969-74609988 | None:intergenic | 40.0% | |
| !! | CTTGATTTGAGTTTTGCTGC+AGG | + | chr3_2:74610015-74610034 | Msa0424410:intron | 40.0% |
| ! | TCCATGATTTGGAACAGAAG+CGG | - | chr3_2:74610070-74610089 | None:intergenic | 40.0% |
| !! | TGGAAAGCATTGTCAAAGGA+CGG | + | chr3_2:74610086-74610105 | Msa0424410:CDS | 40.0% |
| GATGTAGACTACCCATTTGT+TGG | + | chr3_2:74610115-74610134 | Msa0424410:CDS | 40.0% | |
| GTTGGGAATCACTTTCAACA+AGG | + | chr3_2:74610133-74610152 | Msa0424410:CDS | 40.0% | |
| GGAATCACTTTCAACAAGGA+AGG | + | chr3_2:74610137-74610156 | Msa0424410:CDS | 40.0% | |
| AGAAACAGGCAACAATGTAG+TGG | - | chr3_2:74610265-74610284 | None:intergenic | 40.0% | |
| CTGGTGACTGTATAAAAACC+AGG | + | chr3_2:74610336-74610355 | Msa0424410:intron | 40.0% | |
| GGACAACATATGAAGAGTCA+CGG | + | chr3_2:74610390-74610409 | Msa0424410:CDS | 40.0% | |
| GGCGATAAAGTTTATTGGGT+AGG | + | chr3_2:74610947-74610966 | Msa0424410:intron | 40.0% | |
| ATCCAACATTTGCTTTGCAC+AGG | + | chr3_2:74611056-74611075 | Msa0424410:intron | 40.0% | |
| TACCTGTGCAAAGCAAATGT+TGG | - | chr3_2:74611061-74611080 | None:intergenic | 40.0% | |
| CACATGATGCAAAATATGCC+AGG | - | chr3_2:74611197-74611216 | None:intergenic | 40.0% | |
| ! | CTGGCATATTTTGCATCATG+TGG | + | chr3_2:74611195-74611214 | Msa0424410:three_prime_UTR | 40.0% |
| !!! | CAGGCTGGGAATTTTAGTTT+TGG | + | chr3_2:74611248-74611267 | Msa0424410:three_prime_UTR | 40.0% |
| TTGAATCGCACTCAATTGCA+AGG | - | chr3_2:74611401-74611420 | None:intergenic | 40.0% | |
| !! | CCAAAAGATGATGGAAGACT+TGG | - | chr3_2:74611518-74611537 | None:intergenic | 40.0% |
| ! | CCAAGTCTTCCATCATCTTT+TGG | + | chr3_2:74611515-74611534 | Msa0424410:three_prime_UTR | 40.0% |
| CATCTTTACAAGACAATCCC+AGG | - | chr3_2:74611747-74611766 | None:intergenic | 40.0% | |
| ATCGTACCGTTTGAGAATCG+AGG | - | chr3_2:74604728-74604747 | None:intergenic | 45.0% | |
| TCAAGCTGGTGGTTGAAATG+GGG | + | chr3_2:74604951-74604970 | Msa0424410:intron | 45.0% | |
| TTGAAATGGGGGATGACCTT+GGG | + | chr3_2:74604963-74604982 | Msa0424410:intron | 45.0% | |
| TAACGCTCAAGCTGAAAGAC+CGG | + | chr3_2:74605006-74605025 | Msa0424410:intron | 45.0% | |
| TCTGTCTCATACAACATCGC+CGG | - | chr3_2:74605028-74605047 | None:intergenic | 45.0% | |
| TTTCGACAATGGATGGCAAG+AGG | + | chr3_2:74605485-74605504 | Msa0424410:intron | 45.0% | |
| CAGGTACCACCAAGTTACAA+TGG | - | chr3_2:74605753-74605772 | None:intergenic | 45.0% | |
| ! | CATTGTAACTTGGTGGTACC+TGG | + | chr3_2:74605751-74605770 | Msa0424410:intron | 45.0% |
| !! | TGACATTGGTTCGCTTGACT+TGG | - | chr3_2:74605921-74605940 | None:intergenic | 45.0% |
| CGAACCAATGTCACATCTCA+AGG | + | chr3_2:74605928-74605947 | Msa0424410:CDS | 45.0% | |
| CAAGTTCAGGTAACTGCTCA+TGG | + | chr3_2:74606263-74606282 | Msa0424410:intron | 45.0% | |
| AGTTCAGGTAACTGCTCATG+GGG | + | chr3_2:74606265-74606284 | Msa0424410:intron | 45.0% | |
| CACTGTTGAGCTTGAAGCTT+TGG | + | chr3_2:74606783-74606802 | Msa0424410:intron | 45.0% | |
| GATTGCAACACAAAGGGTAG+AGG | - | chr3_2:74606810-74606829 | None:intergenic | 45.0% | |
| ! | ATTTGTTGCCCTGATCATCC+AGG | + | chr3_2:74606871-74606890 | Msa0424410:intron | 45.0% |
| CATAGTACTCCTGGATGATC+AGG | - | chr3_2:74606883-74606902 | None:intergenic | 45.0% | |
| CAAAGTCTGCATAGTACTCC+TGG | - | chr3_2:74606892-74606911 | None:intergenic | 45.0% | |
| CATTGCAGCGTTTCAGTGAT+CGG | + | chr3_2:74606993-74607012 | Msa0424410:CDS | 45.0% | |
| ATTGCAGCGTTTCAGTGATC+GGG | + | chr3_2:74606994-74607013 | Msa0424410:CDS | 45.0% | |
| ! | TTCAGTGATCGGGTTGTTGA+AGG | + | chr3_2:74607004-74607023 | Msa0424410:CDS | 45.0% |
| CTGATGTACCAAGAGGAAAG+TGG | + | chr3_2:74607419-74607438 | Msa0424410:CDS | 45.0% | |
| CGAAAAGACCACTTTCCTCT+TGG | - | chr3_2:74607430-74607449 | None:intergenic | 45.0% | |
| !! | TGTTGTTGGTGATTGACAGG+AGG | + | chr3_2:74607477-74607496 | Msa0424410:CDS | 45.0% |
| !! | GTTGTTGGTGATTGACAGGA+GGG | + | chr3_2:74607478-74607497 | Msa0424410:CDS | 45.0% |
| ! | TGACGTCCACTTTGTTGTCT+TGG | - | chr3_2:74607686-74607705 | None:intergenic | 45.0% |
| TTTCCAAAGGATCAGGAGGT+TGG | + | chr3_2:74607720-74607739 | Msa0424410:intron | 45.0% | |
| TATCCAACCTCCTGATCCTT+TGG | - | chr3_2:74607726-74607745 | None:intergenic | 45.0% | |
| CTAACTCTTGGAAGAGGACA+TGG | + | chr3_2:74608103-74608122 | Msa0424410:intron | 45.0% | |
| !! | GAACAAGAGTTGGCTTGCAA+TGG | + | chr3_2:74608251-74608270 | Msa0424410:CDS | 45.0% |
| !! | AAGAGTTGGCTTGCAATGGA+GGG | + | chr3_2:74608255-74608274 | Msa0424410:CDS | 45.0% |
| TGTAGCAGCATTTATTGGGG+TGG | + | chr3_2:74608591-74608610 | Msa0424410:intron | 45.0% | |
| GCATTTATTGGGGTGGTTCT+AGG | + | chr3_2:74608598-74608617 | Msa0424410:intron | 45.0% | |
| CAGCCTGCTTCAAAAGAAAC+TGG | - | chr3_2:74609591-74609610 | None:intergenic | 45.0% | |
| !!! | CAGTTTCTTTTGAAGCAGGC+TGG | + | chr3_2:74609589-74609608 | Msa0424410:CDS | 45.0% |
| !!! | GTATGTTTTTGGTCCCTCAC+TGG | + | chr3_2:74609801-74609820 | Msa0424410:intron | 45.0% |
| ATGCCAGTAATACAGGCGTT+CGG | + | chr3_2:74610429-74610448 | Msa0424410:CDS | 45.0% | |
| AAACCGAACGCCTGTATTAC+TGG | - | chr3_2:74610435-74610454 | None:intergenic | 45.0% | |
| ACAGGCGTTCGGTTTATACT+TGG | + | chr3_2:74610440-74610459 | Msa0424410:CDS | 45.0% | |
| TCATGGTATGGGCTTACTAG+AGG | + | chr3_2:74610637-74610656 | Msa0424410:intron | 45.0% | |
| GCTGCTAAACTAATCAACCC+AGG | - | chr3_2:74611030-74611049 | None:intergenic | 45.0% | |
| ! | GCTTTGCACAGGTAGCATTT+TGG | + | chr3_2:74611067-74611086 | Msa0424410:intron | 45.0% |
| !!! | TTGCAGGTTTTTCAGGGACT+TGG | + | chr3_2:74611120-74611139 | Msa0424410:intron | 45.0% |
| ! | TTTTTACGACAGCTTCAGGC+TGG | + | chr3_2:74611233-74611252 | Msa0424410:three_prime_UTR | 45.0% |
| ! | TTTTACGACAGCTTCAGGCT+GGG | + | chr3_2:74611234-74611253 | Msa0424410:three_prime_UTR | 45.0% |
| CTGCTAAAGGAGTTCGATGT+TGG | + | chr3_2:74611297-74611316 | Msa0424410:three_prime_UTR | 45.0% | |
| GGAAGACTTGGCAAATCCAA+AGG | - | chr3_2:74611506-74611525 | None:intergenic | 45.0% | |
| AAGCACAGTTGCAACGTTGA+TGG | + | chr3_2:74611704-74611723 | Msa0424410:three_prime_UTR | 45.0% | |
| !! | TATTATTATTATTAATATAG+TGG | + | chr3_2:74606549-74606568 | Msa0424410:intron | 5.0% |
| !!! | ATTTTTCAAAAAATTTAAAA+AGG | - | chr3_2:74610835-74610854 | None:intergenic | 5.0% |
| CGCCATCTTGTGAATCGATG+AGG | - | chr3_2:74604637-74604656 | None:intergenic | 50.0% | |
| CAAGCTGGTGGTTGAAATGG+GGG | + | chr3_2:74604952-74604971 | Msa0424410:intron | 50.0% | |
| GTTGAAATGGGGGATGACCT+TGG | + | chr3_2:74604962-74604981 | Msa0424410:intron | 50.0% | |
| AATGGATGGCAAGAGGTTGC+AGG | + | chr3_2:74605492-74605511 | Msa0424410:intron | 50.0% | |
| ! | CAGCTGGCTAGTCCTAGATT+CGG | + | chr3_2:74606001-74606020 | Msa0424410:CDS | 50.0% |
| !! | ACTTGCCGATTCGGATGAAC+AGG | + | chr3_2:74606229-74606248 | Msa0424410:CDS | 50.0% |
| GGAAGTTGTCCAGCAAGTTC+AGG | + | chr3_2:74606250-74606269 | Msa0424410:CDS | 50.0% | |
| GAGCAGTTACCTGAACTTGC+TGG | - | chr3_2:74606262-74606281 | None:intergenic | 50.0% | |
| CTGAAGGATCTACGACAGCT+GGG | - | chr3_2:74606973-74606992 | None:intergenic | 50.0% | |
| CTGAAACGCTGCAATGCTGA+AGG | - | chr3_2:74606989-74607008 | None:intergenic | 50.0% | |
| GCAGGAGGTTGTTCTGTCAT+CGG | + | chr3_2:74607834-74607853 | Msa0424410:intron | 50.0% | |
| !! | CAAGAGTTGGCTTGCAATGG+AGG | + | chr3_2:74608254-74608273 | Msa0424410:CDS | 50.0% |
| ! | TTTTTCGCCTGCTCTGCACA+TGG | + | chr3_2:74608561-74608580 | Msa0424410:intron | 50.0% |
| !! | GCTGGTGTTGACAAGAGAAC+TGG | + | chr3_2:74609607-74609626 | Msa0424410:CDS | 50.0% |
| ! | TAACATGGCTCGTGGACTGA+AGG | + | chr3_2:74609669-74609688 | Msa0424410:CDS | 50.0% |
| ! | TGATTTGGAACAGAAGCGGC+TGG | - | chr3_2:74610066-74610085 | None:intergenic | 50.0% |
| GCCGCTTCTGTTCCAAATCA+TGG | + | chr3_2:74610066-74610085 | Msa0424410:CDS | 50.0% | |
| ! | GTGAACTTCTAGAGGTCTCG+TGG | + | chr3_2:74610202-74610221 | Msa0424410:intron | 50.0% |
| CTGTATAAAAACCAGGCCCC+AGG | + | chr3_2:74610343-74610362 | Msa0424410:intron | 50.0% | |
| GGCGTTCGGTTTATACTTGG+TGG | + | chr3_2:74610443-74610462 | Msa0424410:CDS | 50.0% | |
| GGACTTGGAAGAAGCTCAGA+GGG | + | chr3_2:74611135-74611154 | Msa0424410:CDS | 50.0% | |
| ATTCAAGAGCAAGCCACCCA+TGG | + | chr3_2:74611415-74611434 | Msa0424410:three_prime_UTR | 50.0% | |
| AAAAGAGAGGGACGAGCCAT+GGG | - | chr3_2:74611434-74611453 | None:intergenic | 50.0% | |
| AAAAAGAGAGGGACGAGCCA+TGG | - | chr3_2:74611435-74611454 | None:intergenic | 50.0% | |
| !! | CAGTTGCAACGTTGATGGCA+TGG | + | chr3_2:74611709-74611728 | Msa0424410:three_prime_UTR | 50.0% |
| CATGGCATTATGTGCTGCCT+GGG | + | chr3_2:74611727-74611746 | Msa0424410:three_prime_UTR | 50.0% | |
| AAGGTCTCGTTCGTCGTCCT+CGG | + | chr3_2:74604514-74604533 | Msa0424410:five_prime_UTR | 55.0% | |
| CCAGCTGACGACGCATATAC+TGG | - | chr3_2:74605988-74606007 | None:intergenic | 55.0% | |
| CCAGTATATGCGTCGTCAGC+TGG | + | chr3_2:74605985-74606004 | Msa0424410:CDS | 55.0% | |
| GCTGAAGGATCTACGACAGC+TGG | - | chr3_2:74606974-74606993 | None:intergenic | 55.0% | |
| !! | TTGGCTTGCAATGGAGGGCA+AGG | + | chr3_2:74608260-74608279 | Msa0424410:CDS | 55.0% |
| !!! | AGGGCAAGGAGCTGCTTTTG+AGG | + | chr3_2:74608274-74608293 | Msa0424410:CDS | 55.0% |
| GCAAGTACCATGTGCAGAGC+AGG | - | chr3_2:74608571-74608590 | None:intergenic | 55.0% | |
| ATTGCGCGTAACATGGCTCG+TGG | + | chr3_2:74609661-74609680 | Msa0424410:CDS | 55.0% | |
| TCCCTCACTGGACCCTTACA+TGG | + | chr3_2:74609813-74609832 | Msa0424410:intron | 55.0% | |
| CCCATGTAAGGGTCCAGTGA+GGG | - | chr3_2:74609817-74609836 | None:intergenic | 55.0% | |
| CCCTCACTGGACCCTTACAT+GGG | + | chr3_2:74609814-74609833 | Msa0424410:intron | 55.0% | |
| TCCCATGTAAGGGTCCAGTG+AGG | - | chr3_2:74609818-74609837 | None:intergenic | 55.0% | |
| GATAATTACGTCCTGGGGCC+TGG | - | chr3_2:74610357-74610376 | None:intergenic | 55.0% | |
| GGGACTTGGAAGAAGCTCAG+AGG | + | chr3_2:74611134-74611153 | Msa0424410:CDS | 55.0% | |
| GCATGGCATTATGTGCTGCC+TGG | + | chr3_2:74611726-74611745 | Msa0424410:three_prime_UTR | 55.0% | |
| GAACAGAAGCGGCTGGTGCT+GGG | - | chr3_2:74610059-74610078 | None:intergenic | 60.0% | |
| AGATCCACCACCAGCGACCG+AGG | - | chr3_2:74604534-74604553 | None:intergenic | 65.0% | |
| GGAACAGAAGCGGCTGGTGC+TGG | - | chr3_2:74610060-74610079 | None:intergenic | 65.0% | |
| AGAGAGGGACGAGCCATGGG+TGG | - | chr3_2:74611431-74611450 | None:intergenic | 65.0% | |
| CGTTCGTCGTCCTCGGTCGC+TGG | + | chr3_2:74604521-74604540 | Msa0424410:five_prime_UTR | 70.0% | |
| TCGTCGTCCTCGGTCGCTGG+TGG | + | chr3_2:74604524-74604543 | Msa0424410:five_prime_UTR | 70.0% | |
| TCGTCCTCGGTCGCTGGTGG+TGG | + | chr3_2:74604527-74604546 | Msa0424410:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74604429 | 74611846 | 74604429 | ID=Msa0424410;Name=Msa0424410 |
| chr3_2 | mRNA | 74604429 | 74611846 | 74604429 | ID=Msa0424410-mRNA-1;Parent=Msa0424410;Name=Msa0424410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=222|1|1|1|1|1|13|660|568 |
| chr3_2 | exon | 74604429 | 74604740 | 74604429 | ID=Msa0424410-mRNA-1:exon:18856;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74605836 | 74606037 | 74605836 | ID=Msa0424410-mRNA-1:exon:18857;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74606192 | 74606271 | 74606192 | ID=Msa0424410-mRNA-1:exon:18858;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74606893 | 74607120 | 74606893 | ID=Msa0424410-mRNA-1:exon:18859;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74607416 | 74607541 | 74607416 | ID=Msa0424410-mRNA-1:exon:18860;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74607657 | 74607737 | 74607657 | ID=Msa0424410-mRNA-1:exon:18861;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74607838 | 74607979 | 74607838 | ID=Msa0424410-mRNA-1:exon:18862;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74608117 | 74608295 | 74608117 | ID=Msa0424410-mRNA-1:exon:18863;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74609126 | 74609281 | 74609126 | ID=Msa0424410-mRNA-1:exon:18864;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74609583 | 74609690 | 74609583 | ID=Msa0424410-mRNA-1:exon:18865;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74610037 | 74610158 | 74610037 | ID=Msa0424410-mRNA-1:exon:18866;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74610358 | 74610489 | 74610358 | ID=Msa0424410-mRNA-1:exon:18867;Parent=Msa0424410-mRNA-1 |
| chr3_2 | exon | 74611126 | 74611846 | 74611126 | ID=Msa0424410-mRNA-1:exon:18868;Parent=Msa0424410-mRNA-1 |
| chr3_2 | five_prime_UTR | 74604429 | 74604650 | 74604429 | ID=Msa0424410-mRNA-1:five_prime_utr;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74604651 | 74604740 | 74604651 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74605836 | 74606037 | 74605836 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74606192 | 74606271 | 74606192 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74606893 | 74607120 | 74606893 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74607416 | 74607541 | 74607416 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74607657 | 74607737 | 74607657 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74607838 | 74607979 | 74607838 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74608117 | 74608295 | 74608117 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74609126 | 74609281 | 74609126 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74609583 | 74609690 | 74609583 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74610037 | 74610158 | 74610037 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74610358 | 74610489 | 74610358 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | CDS | 74611126 | 74611186 | 74611126 | ID=Msa0424410-mRNA-1:cds;Parent=Msa0424410-mRNA-1 |
| chr3_2 | three_prime_UTR | 74611187 | 74611846 | 74611187 | ID=Msa0424410-mRNA-1:three_prime_utr;Parent=Msa0424410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
