Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424490 | XP_003602158.1 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 2.09e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424490 | G7J665 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 9.98e-177 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0424490 | 0.834157 | 3.525303e-56 | -8.615850e-47 |
| Msa0029960 | Msa0424490 | 0.800069 | 1.713282e-48 | -8.615850e-47 |
| Msa0043290 | Msa0424490 | 0.800622 | 1.322156e-48 | -8.615850e-47 |
| Msa0064120 | Msa0424490 | 0.817234 | 3.664966e-52 | -8.615850e-47 |
| Msa0108880 | Msa0424490 | 0.828792 | 7.381968e-55 | -8.615850e-47 |
| Msa0155180 | Msa0424490 | 0.816501 | 5.352501e-52 | -8.615850e-47 |
| Msa0418970 | Msa0424490 | 0.831088 | 2.035137e-55 | -8.615850e-47 |
| Msa0424490 | Msa0460550 | 0.807738 | 4.364771e-50 | -8.615850e-47 |
| Msa0424490 | Msa0471460 | 0.896313 | 4.159299e-76 | -8.615850e-47 |
| Msa0424490 | Msa0471540 | 0.995987 | 4.200787e-222 | -8.615850e-47 |
| Msa0424490 | Msa0562620 | 0.812972 | 3.239761e-51 | -8.615850e-47 |
| Msa0424490 | Msa0649840 | 0.809990 | 1.439705e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424490 | MtrunA17_Chr3g0126191 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 1.92e-180 | 495 |
| Msa0424490 | MtrunA17_Chr5g0397281 | 33.333 | 150 | 100 | 0 | 83 | 232 | 80 | 229 | 1.19e-25 | 102 |
| Msa0424490 | MtrunA17_Chr7g0221181 | 31.250 | 144 | 99 | 0 | 85 | 228 | 77 | 220 | 8.94e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424490 | AT1G71480.1 | 30.220 | 182 | 123 | 3 | 45 | 225 | 32 | 210 | 6.08e-26 | 101 |
| Msa0424490 | AT5G41470.1 | 30.337 | 178 | 123 | 1 | 57 | 233 | 45 | 222 | 8.63e-25 | 100 |
| Msa0424490 | AT1G71480.3 | 29.452 | 146 | 101 | 1 | 45 | 190 | 32 | 175 | 3.14e-20 | 85.5 |
Find 63 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGGAAATTTCTTATT+AGG | 0.206117 | 3_2:+74688363 | Msa0424490:CDS |
| TGCACTGGTGAAGGACTTTC+TGG | 0.239208 | 3_2:-74685715 | None:intergenic |
| AAAAGGAATTGGCCAAATAT+TGG | 0.243336 | 3_2:+74688798 | Msa0424490:CDS |
| CTTCTAATCGAAAAGAGATT+TGG | 0.255141 | 3_2:-74685495 | None:intergenic |
| GTGGATAGCTATCCAATATT+TGG | 0.264848 | 3_2:-74688810 | None:intergenic |
| TTCAGAGCATCATAAAGTTT+TGG | 0.287415 | 3_2:+74686229 | Msa0424490:intron |
| GGACTTTCTGGTAGAAATTC+AGG | 0.288932 | 3_2:-74685703 | None:intergenic |
| AAATTATACATACAATAAAT+AGG | 0.318159 | 3_2:-74689187 | None:intergenic |
| TGAAAGCCTCGTAGAATTCA+TGG | 0.323872 | 3_2:-74685744 | None:intergenic |
| TCTCTGTAGAAACTTCTAAA+AGG | 0.339328 | 3_2:+74688781 | Msa0424490:intron |
| ACTATTGGTGGTGTTCTTGT+TGG | 0.356125 | 3_2:-74685530 | None:intergenic |
| TCGAAAAGAGATTTGGGATT+GGG | 0.361982 | 3_2:-74685488 | None:intergenic |
| TTCTAATCGAAAAGAGATTT+GGG | 0.363969 | 3_2:-74685494 | None:intergenic |
| TAGAAACTTCTAAAAGGAAT+TGG | 0.371439 | 3_2:+74688787 | Msa0424490:intron |
| TGGTTTGGCAACAAGATTGA+TGG | 0.375216 | 3_2:-74685596 | None:intergenic |
| CATAACATGGTTGCTTTCCT+TGG | 0.382247 | 3_2:-74686304 | None:intergenic |
| AATGATGCCATGGTTGCATT+TGG | 0.421744 | 3_2:-74685463 | None:intergenic |
| GTTTGGTAGCAACGTTGGTT+TGG | 0.432723 | 3_2:-74685611 | None:intergenic |
| CAAGGAAAGCAACCATGTTA+TGG | 0.442440 | 3_2:+74686305 | Msa0424490:CDS |
| TTTAACGGCCTCTTTAGGTT+TGG | 0.454324 | 3_2:-74685628 | None:intergenic |
| AGGTCCTGGTAGACACAGTT+AGG | 0.457198 | 3_2:-74685805 | None:intergenic |
| AATGCATGGTCGTGTACTAT+TGG | 0.462474 | 3_2:-74685545 | None:intergenic |
| ATTATATGTTTCTTATATGT+CGG | 0.465585 | 3_2:-74689144 | None:intergenic |
| TTTACGTTTGAAGAAGTTGA+AGG | 0.468132 | 3_2:+74688347 | Msa0424490:CDS |
| TTCTCCTAACTGTGTCTACC+AGG | 0.476998 | 3_2:+74685801 | Msa0424490:CDS |
| CGTAGCAGCGACGATGGATC+AGG | 0.480416 | 3_2:+74685670 | Msa0424490:CDS |
| CTCTTCTACACTGCGTATGA+AGG | 0.481508 | 3_2:+74685829 | Msa0424490:CDS |
| AAGAAGCTACCCTTCACAAA+TGG | 0.483077 | 3_2:+74688314 | Msa0424490:CDS |
| CGTTGCTACCAAACCTAAAG+AGG | 0.484520 | 3_2:+74685620 | Msa0424490:CDS |
| TAGGAATATAAAATGCTGAA+TGG | 0.489665 | 3_2:-74689219 | None:intergenic |
| GGATTGGGGCAATGATGCCA+TGG | 0.491551 | 3_2:-74685473 | None:intergenic |
| CAGTGTAGAAGAGGAGGTCC+TGG | 0.501644 | 3_2:-74685819 | None:intergenic |
| CATTTACCTGCTGCTGCTAG+TGG | 0.516280 | 3_2:-74688829 | None:intergenic |
| TACCATTGCTTGAAGCTGTA+GGG | 0.518929 | 3_2:-74689060 | None:intergenic |
| ATCGAAAAGAGATTTGGGAT+TGG | 0.521332 | 3_2:-74685489 | None:intergenic |
| AAAACCTGGTGAACTAGTCC+TGG | 0.530675 | 3_2:+74688535 | Msa0424490:CDS |
| CTACCATTGCTTGAAGCTGT+AGG | 0.530919 | 3_2:-74689061 | None:intergenic |
| TCAATTTCCAAATGCAACCA+TGG | 0.542141 | 3_2:+74685456 | Msa0424490:exon |
| CGAAAAGAGATTTGGGATTG+GGG | 0.542620 | 3_2:-74685487 | None:intergenic |
| AATTCATGGACAAGGTGCAC+TGG | 0.547716 | 3_2:-74685730 | None:intergenic |
| AGCTATCCACTAGCAGCAGC+AGG | 0.549179 | 3_2:+74688823 | Msa0424490:CDS |
| AAATCTGCATCCATTTGTGA+AGG | 0.550229 | 3_2:-74688324 | None:intergenic |
| TTACGTTTGAAGAAGTTGAA+GGG | 0.552151 | 3_2:+74688348 | Msa0424490:CDS |
| TTCCCTACAGCTTCAAGCAA+TGG | 0.555183 | 3_2:+74689058 | Msa0424490:three_prime_UTR |
| TGGACAAGGTGCACTGGTGA+AGG | 0.559644 | 3_2:-74685724 | None:intergenic |
| TTGCAGCAAAATAACATGCA+TGG | 0.562652 | 3_2:+74688499 | Msa0424490:intron |
| TTTAGGTTTGGTAGCAACGT+TGG | 0.563232 | 3_2:-74685616 | None:intergenic |
| GTCACTGCGTTTATGCACTT+AGG | 0.577680 | 3_2:+74686327 | Msa0424490:CDS |
| CTTCATACGCAGTGTAGAAG+AGG | 0.583497 | 3_2:-74685828 | None:intergenic |
| GCATGGTCGTGTACTATTGG+TGG | 0.597459 | 3_2:-74685542 | None:intergenic |
| GCAAAGCGTGATGGATGCAA+TGG | 0.606855 | 3_2:+74686251 | Msa0424490:CDS |
| CCTCGTAGAATTCATGGACA+AGG | 0.617032 | 3_2:-74685738 | None:intergenic |
| AAAGTGCGTAGCAGCGACGA+TGG | 0.623482 | 3_2:+74685664 | Msa0424490:CDS |
| TTGCATAAACGAGCAATGCA+TGG | 0.623541 | 3_2:-74685559 | None:intergenic |
| AATACCAGGACTAGTTCACC+AGG | 0.629754 | 3_2:-74688539 | None:intergenic |
| CAAAGCGTGATGGATGCAAT+GGG | 0.632352 | 3_2:+74686252 | Msa0424490:CDS |
| AATCTGCATCCATTTGTGAA+GGG | 0.632536 | 3_2:-74688323 | None:intergenic |
| TAAACGCAGTGACCATAACA+TGG | 0.634481 | 3_2:-74686317 | None:intergenic |
| GAGGAATTTCCACTAAAACC+TGG | 0.644441 | 3_2:+74688521 | Msa0424490:CDS |
| CATACGCAGTGTAGAAGAGG+AGG | 0.671913 | 3_2:-74685825 | None:intergenic |
| CACTGCGTATGAAGGCCAAG+AGG | 0.688393 | 3_2:+74685837 | Msa0424490:CDS |
| CAGCAAAATAACATGCATGG+AGG | 0.695797 | 3_2:+74688502 | Msa0424490:intron |
| CCTTGTCCATGAATTCTACG+AGG | 0.699250 | 3_2:+74685738 | Msa0424490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTATTTTTTATTTTGTT+TGG | + | chr3_2:74685866-74685885 | Msa0424490:intron | 10.0% |
| !! | CAAATATATATAATGAATTT+CGG | + | chr3_2:74686117-74686136 | Msa0424490:intron | 10.0% |
| !! | AAATATATATAATGAATTTC+GGG | + | chr3_2:74686118-74686137 | Msa0424490:intron | 10.0% |
| !! | TGAAAATATAAATTACAAAT+TGG | - | chr3_2:74687686-74687705 | None:intergenic | 10.0% |
| !!! | AATAAAATTGTGTATTTTTA+TGG | + | chr3_2:74689120-74689139 | Msa0424490:three_prime_UTR | 10.0% |
| !! | AAATTATACATACAATAAAT+AGG | - | chr3_2:74689190-74689209 | None:intergenic | 10.0% |
| !!! | AAATTCAGTATAGTTAATTT+TGG | + | chr3_2:74686164-74686183 | Msa0424490:intron | 15.0% |
| !! | ACAAAAAGGAAAATAAAAAA+GGG | - | chr3_2:74686375-74686394 | None:intergenic | 15.0% |
| !! | AACAAAAAGGAAAATAAAAA+AGG | - | chr3_2:74686376-74686395 | None:intergenic | 15.0% |
| !! | AATTTCAATAATCAAAATTG+TGG | - | chr3_2:74686431-74686450 | None:intergenic | 15.0% |
| !!! | ACAATTTTGATTATTGAAAT+TGG | + | chr3_2:74686430-74686449 | Msa0424490:intron | 15.0% |
| !!! | TTTATTCATTTCATACATTT+TGG | + | chr3_2:74686896-74686915 | Msa0424490:intron | 15.0% |
| !! | AATTTGTAAATGTTTAATTG+AGG | - | chr3_2:74687069-74687088 | None:intergenic | 15.0% |
| !!! | AAACTTTTTACCAATTATAT+AGG | + | chr3_2:74687120-74687139 | Msa0424490:intron | 15.0% |
| !!! | TTTTTTGCAATATTTTTTGT+GGG | + | chr3_2:74687164-74687183 | Msa0424490:intron | 15.0% |
| !! | AAAATTATTATTCTTTAGCT+AGG | - | chr3_2:74687299-74687318 | None:intergenic | 15.0% |
| !!! | TTTTTATACAAAGGTAAAAT+TGG | - | chr3_2:74687511-74687530 | None:intergenic | 15.0% |
| !!! | AGATTTTTGTTTTTATACAA+AGG | - | chr3_2:74687520-74687539 | None:intergenic | 15.0% |
| !!! | TTTTATTAAGTTTTCAAGAA+AGG | + | chr3_2:74687752-74687771 | Msa0424490:intron | 15.0% |
| !!! | ATTAACATGTTTAGAATATT+AGG | - | chr3_2:74688447-74688466 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAATATTGAAGT+AGG | - | chr3_2:74688571-74688590 | None:intergenic | 15.0% |
| !! | ATTTATTGTTTGGAAAATTA+AGG | + | chr3_2:74688617-74688636 | Msa0424490:intron | 15.0% |
| !!! | ATTAAATTTGTCTAAAGTAT+TGG | - | chr3_2:74688668-74688687 | None:intergenic | 15.0% |
| !!! | TTGAAATGCTATTTTTAAAA+AGG | - | chr3_2:74688712-74688731 | None:intergenic | 15.0% |
| !! | ATTATATGTTTCTTATATGT+CGG | - | chr3_2:74689147-74689166 | None:intergenic | 15.0% |
| !!! | TTCCATTTTTCAACTTTTAA+CGG | - | chr3_2:74685646-74685665 | None:intergenic | 20.0% |
| !! | AAACTCATACATATTATATG+CGG | + | chr3_2:74685908-74685927 | Msa0424490:intron | 20.0% |
| !!! | ATAGTTAATTTTGGAATGAT+TGG | + | chr3_2:74686173-74686192 | Msa0424490:intron | 20.0% |
| !! | AAAATAAAAAAGGGTGAATT+GGG | - | chr3_2:74686366-74686385 | None:intergenic | 20.0% |
| !! | TTGTAAAACTATGAACAAAA+AGG | - | chr3_2:74686389-74686408 | None:intergenic | 20.0% |
| !!! | GTTTTACAAGATGATTTTTT+TGG | + | chr3_2:74686400-74686419 | Msa0424490:intron | 20.0% |
| !!! | TGTCATAAACTTTTTTTTTG+TGG | + | chr3_2:74686729-74686748 | Msa0424490:intron | 20.0% |
| !! | TGTATAAGGGAAATAAATTA+TGG | - | chr3_2:74686864-74686883 | None:intergenic | 20.0% |
| !! | AAAAAACTGAGTATGTATAA+GGG | - | chr3_2:74686877-74686896 | None:intergenic | 20.0% |
| !! | AAAAAAACTGAGTATGTATA+AGG | - | chr3_2:74686878-74686897 | None:intergenic | 20.0% |
| !!! | TTGGTTTCTTTAATTTGTTA+TGG | + | chr3_2:74686915-74686934 | Msa0424490:intron | 20.0% |
| !!! | TTTCTTTAATTTGTTATGGT+TGG | + | chr3_2:74686919-74686938 | Msa0424490:intron | 20.0% |
| !!! | TTCTTTAATTTGTTATGGTT+GGG | + | chr3_2:74686920-74686939 | Msa0424490:intron | 20.0% |
| !!! | CTTTTTTGCAATATTTTTTG+TGG | + | chr3_2:74687163-74687182 | Msa0424490:intron | 20.0% |
| !!! | TGACTACAAATTTTATTTTC+CGG | - | chr3_2:74687662-74687681 | None:intergenic | 20.0% |
| !! | AGACTAGTATAAAATAATGA+AGG | + | chr3_2:74688094-74688113 | Msa0424490:intron | 20.0% |
| !! | ATAGGTTCATATTTATTGTT+TGG | + | chr3_2:74688607-74688626 | Msa0424490:intron | 20.0% |
| !!! | ATTTTTCTTCCTATAAACAT+TGG | + | chr3_2:74688686-74688705 | Msa0424490:intron | 20.0% |
| ! | TTCTAATCGAAAAGAGATTT+GGG | - | chr3_2:74685497-74685516 | None:intergenic | 25.0% |
| ! | AAATAAAAGATGAAACCTCT+TGG | - | chr3_2:74685855-74685874 | None:intergenic | 25.0% |
| ! | GAAAATAAAAAAGGGTGAAT+TGG | - | chr3_2:74686367-74686386 | None:intergenic | 25.0% |
| !! | TCAGCAATTAAATCGTATTT+TGG | - | chr3_2:74686469-74686488 | None:intergenic | 25.0% |
| !! | TTTGAGATTTAAGTGACTAA+CGG | - | chr3_2:74686501-74686520 | None:intergenic | 25.0% |
| !!! | CATAAACTTTTTTTTTGTGG+TGG | + | chr3_2:74686732-74686751 | Msa0424490:intron | 25.0% |
| ! | GATTGAGCTGAAAAAAAAAA+TGG | - | chr3_2:74687100-74687119 | None:intergenic | 25.0% |
| !! | ATTGATGCTGATAATTTTCA+AGG | - | chr3_2:74687414-74687433 | None:intergenic | 25.0% |
| ! | TGGAAGCTTAAGAAAAATAT+GGG | - | chr3_2:74687491-74687510 | None:intergenic | 25.0% |
| ! | TTGGAAGCTTAAGAAAAATA+TGG | - | chr3_2:74687492-74687511 | None:intergenic | 25.0% |
| !! | AATACTTGATAAACGTTTTC+CGG | + | chr3_2:74687783-74687802 | Msa0424490:intron | 25.0% |
| !!! | TTTTATACTAGTCTCTGTAT+TGG | - | chr3_2:74688088-74688107 | None:intergenic | 25.0% |
| ! | AAGCAAAAATATGTCATGAA+AGG | - | chr3_2:74688197-74688216 | None:intergenic | 25.0% |
| ! | AACAAGCTATACATTCATTT+CGG | - | chr3_2:74688242-74688261 | None:intergenic | 25.0% |
| !!! | AAATGAATGTATAGCTTGTT+CGG | + | chr3_2:74688242-74688261 | Msa0424490:intron | 25.0% |
| ! | TTGAAGGGAAATTTCTTATT+AGG | + | chr3_2:74688363-74688382 | Msa0424490:CDS | 25.0% |
| ! | TTAAAAAGGCCAATGTTTAT+AGG | - | chr3_2:74688698-74688717 | None:intergenic | 25.0% |
| !! | TAGAAACTTCTAAAAGGAAT+TGG | + | chr3_2:74688787-74688806 | Msa0424490:intron | 25.0% |
| ! | AAATATTTACTGGAAAAGCA+AGG | - | chr3_2:74688886-74688905 | None:intergenic | 25.0% |
| ! | TTTCCAGTAAATATTTACAC+AGG | + | chr3_2:74688890-74688909 | Msa0424490:intron | 25.0% |
| ! | ATTCCTGTGTAAATATTTAC+TGG | - | chr3_2:74688896-74688915 | None:intergenic | 25.0% |
| !!! | CATTTGGATTTTGATATCTT+TGG | + | chr3_2:74689009-74689028 | Msa0424490:CDS | 25.0% |
| CTTCTAATCGAAAAGAGATT+TGG | - | chr3_2:74685498-74685517 | None:intergenic | 30.0% | |
| !! | TTATGATGCTCTGAAATTGA+AGG | - | chr3_2:74686224-74686243 | None:intergenic | 30.0% |
| !! | TTCAGAGCATCATAAAGTTT+TGG | + | chr3_2:74686229-74686248 | Msa0424490:intron | 30.0% |
| ! | TCCAAATATTCACGTTTTTG+TGG | + | chr3_2:74686275-74686294 | Msa0424490:CDS | 30.0% |
| TCCACAAAAACGTGAATATT+TGG | - | chr3_2:74686279-74686298 | None:intergenic | 30.0% | |
| !!! | ATCGTATTTTGGTTTGAGTT+AGG | - | chr3_2:74686458-74686477 | None:intergenic | 30.0% |
| TTAGTGACTAAAGTGATTGA+TGG | - | chr3_2:74686633-74686652 | None:intergenic | 30.0% | |
| CTAAAGTGATTGAACATCTT+TGG | - | chr3_2:74686662-74686681 | None:intergenic | 30.0% | |
| !! | CTATACTGACTTAACATCTT+TGG | - | chr3_2:74686698-74686717 | None:intergenic | 30.0% |
| GACAATGCATTATATATGCA+AGG | - | chr3_2:74686777-74686796 | None:intergenic | 30.0% | |
| ATGAACTAATTCAACTGAGA+AGG | + | chr3_2:74686836-74686855 | Msa0424490:intron | 30.0% | |
| TCATGTCTTCTCTATCAAAT+TGG | + | chr3_2:74686953-74686972 | Msa0424490:intron | 30.0% | |
| ! | GTCCTATTAGTATTTTGCAA+CGG | - | chr3_2:74687346-74687365 | None:intergenic | 30.0% |
| GATAGATCCATAGAAAGAAA+GGG | - | chr3_2:74687377-74687396 | None:intergenic | 30.0% | |
| TAAGAAAAATATGGGGGTAA+AGG | - | chr3_2:74687483-74687502 | None:intergenic | 30.0% | |
| GAAGCTTAAGAAAAATATGG+GGG | - | chr3_2:74687489-74687508 | None:intergenic | 30.0% | |
| GGAAGCTTAAGAAAAATATG+GGG | - | chr3_2:74687490-74687509 | None:intergenic | 30.0% | |
| GCAAGTTTGAGAATATAAAC+CGG | + | chr3_2:74687600-74687619 | Msa0424490:intron | 30.0% | |
| TATAAACCGGAAAACTTTCA+TGG | + | chr3_2:74687613-74687632 | Msa0424490:intron | 30.0% | |
| ! | AAAACTCCATGAAAGTTTTC+CGG | - | chr3_2:74687622-74687641 | None:intergenic | 30.0% |
| ! | AAAACTTTCATGGAGTTTTC+TGG | + | chr3_2:74687623-74687642 | Msa0424490:intron | 30.0% |
| !! | TTCTGGTTTACATATGATTC+CGG | + | chr3_2:74687640-74687659 | Msa0424490:intron | 30.0% |
| !! | AGTTTTCAAGAAAGGTTTTC+TGG | + | chr3_2:74687760-74687779 | Msa0424490:intron | 30.0% |
| TTACTCTTCATCATTATGTG+TGG | + | chr3_2:74687909-74687928 | Msa0424490:intron | 30.0% | |
| !!! | AGAAAGCGTATCTCTTTTTT+CGG | - | chr3_2:74687960-74687979 | None:intergenic | 30.0% |
| TCACATAATTATTTGCAGTG+TGG | + | chr3_2:74688285-74688304 | Msa0424490:intron | 30.0% | |
| TTTACGTTTGAAGAAGTTGA+AGG | + | chr3_2:74688347-74688366 | Msa0424490:CDS | 30.0% | |
| TTACGTTTGAAGAAGTTGAA+GGG | + | chr3_2:74688348-74688367 | Msa0424490:CDS | 30.0% | |
| ATTAAGGTAGAGCAAGAAAA+CGG | + | chr3_2:74688633-74688652 | Msa0424490:intron | 30.0% | |
| !! | GTCTAAAGTATTGGTTCAAT+TGG | - | chr3_2:74688659-74688678 | None:intergenic | 30.0% |
| AAGCCTCAAATTAATCACTT+CGG | - | chr3_2:74688758-74688777 | None:intergenic | 30.0% | |
| TCTCTGTAGAAACTTCTAAA+AGG | + | chr3_2:74688781-74688800 | Msa0424490:intron | 30.0% | |
| AAAAGGAATTGGCCAAATAT+TGG | + | chr3_2:74688798-74688817 | Msa0424490:CDS | 30.0% | |
| ATTCCCATGCTTCAAAAAAT+GGG | + | chr3_2:74688974-74688993 | Msa0424490:CDS | 30.0% | |
| !! | TGGATTTTGATATCTTTGGA+CGG | + | chr3_2:74689013-74689032 | Msa0424490:CDS | 30.0% |
| TCAATTTCCAAATGCAACCA+TGG | + | chr3_2:74685456-74685475 | Msa0424490:exon | 35.0% | |
| ! | TCGAAAAGAGATTTGGGATT+GGG | - | chr3_2:74685491-74685510 | None:intergenic | 35.0% |
| ! | ATCGAAAAGAGATTTGGGAT+TGG | - | chr3_2:74685492-74685511 | None:intergenic | 35.0% |
| GGCCGTTAAAAGTTGAAAAA+TGG | + | chr3_2:74685641-74685660 | Msa0424490:CDS | 35.0% | |
| ATGCGGAGAAAAATATTGCA+AGG | + | chr3_2:74685925-74685944 | Msa0424490:intron | 35.0% | |
| ACTTCGATGGTAAAAAGTTG+CGG | - | chr3_2:74685973-74685992 | None:intergenic | 35.0% | |
| ! | ACTTTTTACCATCGAAGTTG+AGG | + | chr3_2:74685975-74685994 | Msa0424490:intron | 35.0% |
| ! | GTGACAACTAGTCATACTTT+TGG | - | chr3_2:74686560-74686579 | None:intergenic | 35.0% |
| TGCATTATATATGCAAGGTC+CGG | - | chr3_2:74686772-74686791 | None:intergenic | 35.0% | |
| AGAGAAGACATGATTTCTTC+TGG | - | chr3_2:74686946-74686965 | None:intergenic | 35.0% | |
| TGAACATAGAGCACATATGA+GGG | - | chr3_2:74687013-74687032 | None:intergenic | 35.0% | |
| TTGAACATAGAGCACATATG+AGG | - | chr3_2:74687014-74687033 | None:intergenic | 35.0% | |
| TTGATGTGCGCCTATATAAT+TGG | - | chr3_2:74687133-74687152 | None:intergenic | 35.0% | |
| TTTGTGCCCTTAAGCAATTT+AGG | + | chr3_2:74687316-74687335 | Msa0424490:intron | 35.0% | |
| ! | CTATTAGTATTTTGCAACGG+TGG | - | chr3_2:74687343-74687362 | None:intergenic | 35.0% |
| CACCGTTGCAAAATACTAAT+AGG | + | chr3_2:74687341-74687360 | Msa0424490:intron | 35.0% | |
| GGATAGATCCATAGAAAGAA+AGG | - | chr3_2:74687378-74687397 | None:intergenic | 35.0% | |
| ! | AGGTACAAATATAGGAGTGT+GGG | - | chr3_2:74687463-74687482 | None:intergenic | 35.0% |
| AAGGTACAAATATAGGAGTG+TGG | - | chr3_2:74687464-74687483 | None:intergenic | 35.0% | |
| GGTAAACTTCAAAAAAGCGA+GGG | - | chr3_2:74687566-74687585 | None:intergenic | 35.0% | |
| ! | GTTTTCCGGTGTATGTTATA+TGG | + | chr3_2:74687797-74687816 | Msa0424490:intron | 35.0% |
| TTCGTCCATATAACATACAC+CGG | - | chr3_2:74687805-74687824 | None:intergenic | 35.0% | |
| TCTTCATCATTATGTGTGGT+TGG | + | chr3_2:74687913-74687932 | Msa0424490:intron | 35.0% | |
| ! | CGGCAATTGTATTTTCCTTT+TGG | - | chr3_2:74687940-74687959 | None:intergenic | 35.0% |
| GTAACAGACTAATTTGAGAG+TGG | + | chr3_2:74688118-74688137 | Msa0424490:intron | 35.0% | |
| AATCTGCATCCATTTGTGAA+GGG | - | chr3_2:74688326-74688345 | None:intergenic | 35.0% | |
| AAATCTGCATCCATTTGTGA+AGG | - | chr3_2:74688327-74688346 | None:intergenic | 35.0% | |
| TTAAAAAATCGTGCGCTCAA+TGG | + | chr3_2:74688415-74688434 | Msa0424490:intron | 35.0% | |
| TTGCAGCAAAATAACATGCA+TGG | + | chr3_2:74688499-74688518 | Msa0424490:intron | 35.0% | |
| GAAGTAGGAAAGAAAATACC+AGG | - | chr3_2:74688556-74688575 | None:intergenic | 35.0% | |
| CAAATTAATCACTTCGGAGT+TGG | - | chr3_2:74688752-74688771 | None:intergenic | 35.0% | |
| ! | ACTCCGAAGTGATTAATTTG+AGG | + | chr3_2:74688752-74688771 | Msa0424490:intron | 35.0% |
| GTGGATAGCTATCCAATATT+TGG | - | chr3_2:74688813-74688832 | None:intergenic | 35.0% | |
| GATTCCCATGCTTCAAAAAA+TGG | + | chr3_2:74688973-74688992 | Msa0424490:CDS | 35.0% | |
| TTCCCATGCTTCAAAAAATG+GGG | + | chr3_2:74688975-74688994 | Msa0424490:CDS | 35.0% | |
| AATGATGCCATGGTTGCATT+TGG | - | chr3_2:74685466-74685485 | None:intergenic | 40.0% | |
| ! | CGAAAAGAGATTTGGGATTG+GGG | - | chr3_2:74685490-74685509 | None:intergenic | 40.0% |
| !! | ACTATTGGTGGTGTTCTTGT+TGG | - | chr3_2:74685533-74685552 | None:intergenic | 40.0% |
| AATGCATGGTCGTGTACTAT+TGG | - | chr3_2:74685548-74685567 | None:intergenic | 40.0% | |
| TTGCATAAACGAGCAATGCA+TGG | - | chr3_2:74685562-74685581 | None:intergenic | 40.0% | |
| ! | TGGTTTGGCAACAAGATTGA+TGG | - | chr3_2:74685599-74685618 | None:intergenic | 40.0% |
| ! | TTTAGGTTTGGTAGCAACGT+TGG | - | chr3_2:74685619-74685638 | None:intergenic | 40.0% |
| ! | TTTAACGGCCTCTTTAGGTT+TGG | - | chr3_2:74685631-74685650 | None:intergenic | 40.0% |
| ! | CAACTTTTAACGGCCTCTTT+AGG | - | chr3_2:74685636-74685655 | None:intergenic | 40.0% |
| ! | GGACTTTCTGGTAGAAATTC+AGG | - | chr3_2:74685706-74685725 | None:intergenic | 40.0% |
| TGAAAGCCTCGTAGAATTCA+TGG | - | chr3_2:74685747-74685766 | None:intergenic | 40.0% | |
| AAAGTTGCGGGAACATAGAT+AGG | - | chr3_2:74685960-74685979 | None:intergenic | 40.0% | |
| CTTCGATGGTAAAAAGTTGC+GGG | - | chr3_2:74685972-74685991 | None:intergenic | 40.0% | |
| TTTACCATCGAAGTTGAGGA+TGG | + | chr3_2:74685979-74685998 | Msa0424490:intron | 40.0% | |
| !! | AAAGTTTTGGCAAAGCGTGA+TGG | + | chr3_2:74686242-74686261 | Msa0424490:CDS | 40.0% |
| ! | CGTTTTTGTGGAAGATACCA+AGG | + | chr3_2:74686287-74686306 | Msa0424490:CDS | 40.0% |
| ! | CATAACATGGTTGCTTTCCT+TGG | - | chr3_2:74686307-74686326 | None:intergenic | 40.0% |
| CAAGGAAAGCAACCATGTTA+TGG | + | chr3_2:74686305-74686324 | Msa0424490:CDS | 40.0% | |
| TAAACGCAGTGACCATAACA+TGG | - | chr3_2:74686320-74686339 | None:intergenic | 40.0% | |
| ! | ATCGTGCTTTCGTTTGAGTT+AGG | - | chr3_2:74686589-74686608 | None:intergenic | 40.0% |
| CATTATATATGCAAGGTCCG+GGG | - | chr3_2:74686770-74686789 | None:intergenic | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | - | chr3_2:74686771-74686790 | None:intergenic | 40.0% | |
| TGAGCTTAGCTCAACTGATA+AGG | - | chr3_2:74686799-74686818 | None:intergenic | 40.0% | |
| GGTGGTCCTAAATTGCTTAA+GGG | - | chr3_2:74687325-74687344 | None:intergenic | 40.0% | |
| GGATCTATCCAATCTCACAA+CGG | + | chr3_2:74687388-74687407 | Msa0424490:intron | 40.0% | |
| ! | GGTACAAATATAGGAGTGTG+GGG | - | chr3_2:74687462-74687481 | None:intergenic | 40.0% |
| ! | GGGGGTAAAGGTACAAATAT+AGG | - | chr3_2:74687471-74687490 | None:intergenic | 40.0% |
| CGGTAAACTTCAAAAAAGCG+AGG | - | chr3_2:74687567-74687586 | None:intergenic | 40.0% | |
| ! | AACTTGCTTTCTTAGCGTCT+CGG | - | chr3_2:74687587-74687606 | None:intergenic | 40.0% |
| !! | TCCTAGAATACTGACTTGCA+CGG | - | chr3_2:74687729-74687748 | None:intergenic | 40.0% |
| TTATGTGTGGTTGGACCAAA+AGG | + | chr3_2:74687922-74687941 | Msa0424490:intron | 40.0% | |
| TTCACTAGAACACTATCGCT+TGG | + | chr3_2:74687998-74688017 | Msa0424490:intron | 40.0% | |
| AAGAAGCTACCCTTCACAAA+TGG | + | chr3_2:74688314-74688333 | Msa0424490:CDS | 40.0% | |
| CAGCAAAATAACATGCATGG+AGG | + | chr3_2:74688502-74688521 | Msa0424490:intron | 40.0% | |
| GAGGAATTTCCACTAAAACC+TGG | + | chr3_2:74688521-74688540 | Msa0424490:CDS | 40.0% | |
| !! | ACTAGTTCACCAGGTTTTAG+TGG | - | chr3_2:74688533-74688552 | None:intergenic | 40.0% |
| TCCCATGCTTCAAAAAATGG+GGG | + | chr3_2:74688976-74688995 | Msa0424490:CDS | 40.0% | |
| !!! | TCCCCCATTTTTTGAAGCAT+GGG | - | chr3_2:74688980-74688999 | None:intergenic | 40.0% |
| !!! | TTCCCCCATTTTTTGAAGCA+TGG | - | chr3_2:74688981-74689000 | None:intergenic | 40.0% |
| TACCATTGCTTGAAGCTGTA+GGG | - | chr3_2:74689063-74689082 | None:intergenic | 40.0% | |
| ! | GTTTGGTAGCAACGTTGGTT+TGG | - | chr3_2:74685614-74685633 | None:intergenic | 45.0% |
| CGTTGCTACCAAACCTAAAG+AGG | + | chr3_2:74685620-74685639 | Msa0424490:CDS | 45.0% | |
| AATTCATGGACAAGGTGCAC+TGG | - | chr3_2:74685733-74685752 | None:intergenic | 45.0% | |
| CCTCGTAGAATTCATGGACA+AGG | - | chr3_2:74685741-74685760 | None:intergenic | 45.0% | |
| CCTTGTCCATGAATTCTACG+AGG | + | chr3_2:74685738-74685757 | Msa0424490:CDS | 45.0% | |
| TTCTCCTAACTGTGTCTACC+AGG | + | chr3_2:74685801-74685820 | Msa0424490:CDS | 45.0% | |
| CTTCATACGCAGTGTAGAAG+AGG | - | chr3_2:74685831-74685850 | None:intergenic | 45.0% | |
| CTCTTCTACACTGCGTATGA+AGG | + | chr3_2:74685829-74685848 | Msa0424490:CDS | 45.0% | |
| TTGCGGGAACATAGATAGGT+TGG | - | chr3_2:74685956-74685975 | None:intergenic | 45.0% | |
| GAAACCATCCTCAACTTCGA+TGG | - | chr3_2:74685986-74686005 | None:intergenic | 45.0% | |
| !! | CAAAGCGTGATGGATGCAAT+GGG | + | chr3_2:74686252-74686271 | Msa0424490:CDS | 45.0% |
| GTCACTGCGTTTATGCACTT+AGG | + | chr3_2:74686327-74686346 | Msa0424490:CDS | 45.0% | |
| AAGGTCCGGGGTTTAAATCT+CGG | - | chr3_2:74686758-74686777 | None:intergenic | 45.0% | |
| ACATAGAGCACATATGAGGG+AGG | - | chr3_2:74687010-74687029 | None:intergenic | 45.0% | |
| CGGTGGTCCTAAATTGCTTA+AGG | - | chr3_2:74687326-74687345 | None:intergenic | 45.0% | |
| CGACTCTCCCTTTCTTTCTA+TGG | + | chr3_2:74687367-74687386 | Msa0424490:intron | 45.0% | |
| TTTCAAGGCCGTTGTGAGAT+TGG | - | chr3_2:74687399-74687418 | None:intergenic | 45.0% | |
| TCCGTGCAAGTCAGTATTCT+AGG | + | chr3_2:74687725-74687744 | Msa0424490:intron | 45.0% | |
| AAAACCTGGTGAACTAGTCC+TGG | + | chr3_2:74688535-74688554 | Msa0424490:CDS | 45.0% | |
| !! | AATACCAGGACTAGTTCACC+AGG | - | chr3_2:74688542-74688561 | None:intergenic | 45.0% |
| TGGGGGAAATGACATGCATT+TGG | + | chr3_2:74688993-74689012 | Msa0424490:CDS | 45.0% | |
| TTCCCTACAGCTTCAAGCAA+TGG | + | chr3_2:74689058-74689077 | Msa0424490:three_prime_UTR | 45.0% | |
| CTACCATTGCTTGAAGCTGT+AGG | - | chr3_2:74689064-74689083 | None:intergenic | 45.0% | |
| !!! | AAAATTAATTTGTTTATAAT+TGG | - | chr3_2:74686054-74686073 | None:intergenic | 5.0% |
| !!! | TTTAAAATTAATTTTTTTAG+AGG | - | chr3_2:74686082-74686101 | None:intergenic | 5.0% |
| !! | TTTATTTACTATTATAAAAT+AGG | + | chr3_2:74688589-74688608 | Msa0424490:intron | 5.0% |
| GCATGGTCGTGTACTATTGG+TGG | - | chr3_2:74685545-74685564 | None:intergenic | 50.0% | |
| ! | TGCACTGGTGAAGGACTTTC+TGG | - | chr3_2:74685718-74685737 | None:intergenic | 50.0% |
| AGGTCCTGGTAGACACAGTT+AGG | - | chr3_2:74685808-74685827 | None:intergenic | 50.0% | |
| CATACGCAGTGTAGAAGAGG+AGG | - | chr3_2:74685828-74685847 | None:intergenic | 50.0% | |
| !! | GCAAAGCGTGATGGATGCAA+TGG | + | chr3_2:74686251-74686270 | Msa0424490:CDS | 50.0% |
| TCAGTTGAGCTAAGCTCACG+AGG | + | chr3_2:74686801-74686820 | Msa0424490:intron | 50.0% | |
| CATTTACCTGCTGCTGCTAG+TGG | - | chr3_2:74688832-74688851 | None:intergenic | 50.0% | |
| GGATTGGGGCAATGATGCCA+TGG | - | chr3_2:74685476-74685495 | None:intergenic | 55.0% | |
| AAAGTGCGTAGCAGCGACGA+TGG | + | chr3_2:74685664-74685683 | Msa0424490:CDS | 55.0% | |
| ! | TGGACAAGGTGCACTGGTGA+AGG | - | chr3_2:74685727-74685746 | None:intergenic | 55.0% |
| CAGTGTAGAAGAGGAGGTCC+TGG | - | chr3_2:74685822-74685841 | None:intergenic | 55.0% | |
| CACTGCGTATGAAGGCCAAG+AGG | + | chr3_2:74685837-74685856 | Msa0424490:CDS | 55.0% | |
| GGTGGCCGAGATTTAAACCC+CGG | + | chr3_2:74686750-74686769 | Msa0424490:intron | 55.0% | |
| AGCTATCCACTAGCAGCAGC+AGG | + | chr3_2:74688823-74688842 | Msa0424490:CDS | 55.0% | |
| CGTAGCAGCGACGATGGATC+AGG | + | chr3_2:74685670-74685689 | Msa0424490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74685439 | 74689227 | 74685439 | ID=Msa0424490;Name=Msa0424490 |
| chr3_2 | mRNA | 74685439 | 74689227 | 74685439 | ID=Msa0424490-mRNA-1;Parent=Msa0424490;Name=Msa0424490-mRNA-1;_AED=0.20;_eAED=0.20;_QI=36|1|1|1|1|1|6|183|255 |
| chr3_2 | exon | 74685439 | 74685858 | 74685439 | ID=Msa0424490-mRNA-1:exon:18889;Parent=Msa0424490-mRNA-1 |
| chr3_2 | exon | 74686234 | 74686348 | 74686234 | ID=Msa0424490-mRNA-1:exon:18890;Parent=Msa0424490-mRNA-1 |
| chr3_2 | exon | 74688303 | 74688384 | 74688303 | ID=Msa0424490-mRNA-1:exon:18891;Parent=Msa0424490-mRNA-1 |
| chr3_2 | exon | 74688505 | 74688556 | 74688505 | ID=Msa0424490-mRNA-1:exon:18892;Parent=Msa0424490-mRNA-1 |
| chr3_2 | exon | 74688790 | 74688844 | 74688790 | ID=Msa0424490-mRNA-1:exon:18893;Parent=Msa0424490-mRNA-1 |
| chr3_2 | exon | 74688965 | 74689227 | 74688965 | ID=Msa0424490-mRNA-1:exon:18894;Parent=Msa0424490-mRNA-1 |
| chr3_2 | five_prime_UTR | 74685439 | 74685474 | 74685439 | ID=Msa0424490-mRNA-1:five_prime_utr;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74685475 | 74685858 | 74685475 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74686234 | 74686348 | 74686234 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74688303 | 74688384 | 74688303 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74688505 | 74688556 | 74688505 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74688790 | 74688844 | 74688790 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | CDS | 74688965 | 74689044 | 74688965 | ID=Msa0424490-mRNA-1:cds;Parent=Msa0424490-mRNA-1 |
| chr3_2 | three_prime_UTR | 74689045 | 74689227 | 74689045 | ID=Msa0424490-mRNA-1:three_prime_utr;Parent=Msa0424490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
