Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471540 | XP_003602158.1 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 2.09e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471540 | G7J665 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 9.98e-177 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0471540 | 0.838513 | 2.749982e-57 | -8.615850e-47 |
| Msa0029960 | Msa0471540 | 0.804896 | 1.733561e-49 | -8.615850e-47 |
| Msa0043290 | Msa0471540 | 0.802843 | 4.627864e-49 | -8.615850e-47 |
| Msa0064120 | Msa0471540 | 0.819736 | 9.930172e-53 | -8.615850e-47 |
| Msa0071850 | Msa0471540 | 0.805573 | 1.250805e-49 | -8.615850e-47 |
| Msa0071860 | Msa0471540 | 0.807955 | 3.925640e-50 | -8.615850e-47 |
| Msa0108880 | Msa0471540 | 0.834457 | 2.963763e-56 | -8.615850e-47 |
| Msa0125210 | Msa0471540 | 0.802647 | 5.079199e-49 | -8.615850e-47 |
| Msa0137210 | Msa0471540 | 0.801875 | 7.324040e-49 | -8.615850e-47 |
| Msa0155180 | Msa0471540 | 0.819331 | 1.228257e-52 | -8.615850e-47 |
| Msa0418970 | Msa0471540 | 0.839675 | 1.374696e-57 | -8.615850e-47 |
| Msa0424490 | Msa0471540 | 0.995987 | 4.200787e-222 | -8.615850e-47 |
| Msa0460550 | Msa0471540 | 0.815373 | 9.556510e-52 | -8.615850e-47 |
| Msa0471460 | Msa0471540 | 0.906591 | 1.259907e-80 | -8.615850e-47 |
| Msa0471540 | Msa0562620 | 0.817335 | 3.477630e-52 | -8.615850e-47 |
| Msa0471540 | Msa0649840 | 0.808998 | 2.351189e-50 | -8.615850e-47 |
| Msa0471540 | Msa1014320 | 0.801665 | 8.088171e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471540 | MtrunA17_Chr3g0126191 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 1.92e-180 | 495 |
| Msa0471540 | MtrunA17_Chr5g0397281 | 33.333 | 150 | 100 | 0 | 83 | 232 | 80 | 229 | 1.19e-25 | 102 |
| Msa0471540 | MtrunA17_Chr7g0221181 | 31.250 | 144 | 99 | 0 | 85 | 228 | 77 | 220 | 8.94e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471540 | AT1G71480.1 | 30.220 | 182 | 123 | 3 | 45 | 225 | 32 | 210 | 6.08e-26 | 101 |
| Msa0471540 | AT5G41470.1 | 30.337 | 178 | 123 | 1 | 57 | 233 | 45 | 222 | 8.63e-25 | 100 |
| Msa0471540 | AT1G71480.3 | 29.452 | 146 | 101 | 1 | 45 | 190 | 32 | 175 | 3.14e-20 | 85.5 |
Find 63 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGGAAATTTCTTATT+AGG | 0.206117 | 3_3:+73865059 | Msa0471540:CDS |
| TGCACTGGTGAAGGACTTTC+TGG | 0.239208 | 3_3:-73862411 | None:intergenic |
| AAAAGGAATTGGCCAAATAT+TGG | 0.243336 | 3_3:+73865494 | Msa0471540:CDS |
| CTTCTAATCGAAAAGAGATT+TGG | 0.255141 | 3_3:-73862191 | None:intergenic |
| GTGGATAGCTATCCAATATT+TGG | 0.264848 | 3_3:-73865506 | None:intergenic |
| TTCAGAGCATCATAAAGTTT+TGG | 0.287415 | 3_3:+73862925 | Msa0471540:intron |
| GGACTTTCTGGTAGAAATTC+AGG | 0.288932 | 3_3:-73862399 | None:intergenic |
| AAATTATACATACAATAAAT+AGG | 0.318159 | 3_3:-73865883 | None:intergenic |
| TGAAAGCCTCGTAGAATTCA+TGG | 0.323872 | 3_3:-73862440 | None:intergenic |
| TCTCTGTAGAAACTTCTAAA+AGG | 0.339328 | 3_3:+73865477 | Msa0471540:intron |
| ACTATTGGTGGTGTTCTTGT+TGG | 0.356125 | 3_3:-73862226 | None:intergenic |
| TCGAAAAGAGATTTGGGATT+GGG | 0.361982 | 3_3:-73862184 | None:intergenic |
| TTCTAATCGAAAAGAGATTT+GGG | 0.363969 | 3_3:-73862190 | None:intergenic |
| TAGAAACTTCTAAAAGGAAT+TGG | 0.371439 | 3_3:+73865483 | Msa0471540:intron |
| TGGTTTGGCAACAAGATTGA+TGG | 0.375216 | 3_3:-73862292 | None:intergenic |
| CATAACATGGTTGCTTTCCT+TGG | 0.382247 | 3_3:-73863000 | None:intergenic |
| AATGATGCCATGGTTGCATT+TGG | 0.421744 | 3_3:-73862159 | None:intergenic |
| GTTTGGTAGCAACGTTGGTT+TGG | 0.432723 | 3_3:-73862307 | None:intergenic |
| CAAGGAAAGCAACCATGTTA+TGG | 0.442440 | 3_3:+73863001 | Msa0471540:CDS |
| TTTAACGGCCTCTTTAGGTT+TGG | 0.454324 | 3_3:-73862324 | None:intergenic |
| AGGTCCTGGTAGACACAGTT+AGG | 0.457198 | 3_3:-73862501 | None:intergenic |
| AATGCATGGTCGTGTACTAT+TGG | 0.462474 | 3_3:-73862241 | None:intergenic |
| ATTATATGTTTCTTATATGT+CGG | 0.465585 | 3_3:-73865840 | None:intergenic |
| TTTACGTTTGAAGAAGTTGA+AGG | 0.468132 | 3_3:+73865043 | Msa0471540:CDS |
| TTCTCCTAACTGTGTCTACC+AGG | 0.476998 | 3_3:+73862497 | Msa0471540:CDS |
| CGTAGCAGCGACGATGGATC+AGG | 0.480416 | 3_3:+73862366 | Msa0471540:CDS |
| CTCTTCTACACTGCGTATGA+AGG | 0.481508 | 3_3:+73862525 | Msa0471540:CDS |
| AAGAAGCTACCCTTCACAAA+TGG | 0.483077 | 3_3:+73865010 | Msa0471540:CDS |
| CGTTGCTACCAAACCTAAAG+AGG | 0.484520 | 3_3:+73862316 | Msa0471540:CDS |
| TAGGAATATAAAATGCTGAA+TGG | 0.489665 | 3_3:-73865915 | None:intergenic |
| GGATTGGGGCAATGATGCCA+TGG | 0.491551 | 3_3:-73862169 | None:intergenic |
| CAGTGTAGAAGAGGAGGTCC+TGG | 0.501644 | 3_3:-73862515 | None:intergenic |
| CATTTACCTGCTGCTGCTAG+TGG | 0.516280 | 3_3:-73865525 | None:intergenic |
| TACCATTGCTTGAAGCTGTA+GGG | 0.518929 | 3_3:-73865756 | None:intergenic |
| ATCGAAAAGAGATTTGGGAT+TGG | 0.521332 | 3_3:-73862185 | None:intergenic |
| AAAACCTGGTGAACTAGTCC+TGG | 0.530675 | 3_3:+73865231 | Msa0471540:CDS |
| CTACCATTGCTTGAAGCTGT+AGG | 0.530919 | 3_3:-73865757 | None:intergenic |
| TCAATTTCCAAATGCAACCA+TGG | 0.542141 | 3_3:+73862152 | Msa0471540:exon |
| CGAAAAGAGATTTGGGATTG+GGG | 0.542620 | 3_3:-73862183 | None:intergenic |
| AATTCATGGACAAGGTGCAC+TGG | 0.547716 | 3_3:-73862426 | None:intergenic |
| AGCTATCCACTAGCAGCAGC+AGG | 0.549179 | 3_3:+73865519 | Msa0471540:CDS |
| AAATCTGCATCCATTTGTGA+AGG | 0.550229 | 3_3:-73865020 | None:intergenic |
| TTACGTTTGAAGAAGTTGAA+GGG | 0.552151 | 3_3:+73865044 | Msa0471540:CDS |
| TTCCCTACAGCTTCAAGCAA+TGG | 0.555183 | 3_3:+73865754 | Msa0471540:three_prime_UTR |
| TGGACAAGGTGCACTGGTGA+AGG | 0.559644 | 3_3:-73862420 | None:intergenic |
| TTGCAGCAAAATAACATGCA+TGG | 0.562652 | 3_3:+73865195 | Msa0471540:intron |
| TTTAGGTTTGGTAGCAACGT+TGG | 0.563232 | 3_3:-73862312 | None:intergenic |
| GTCACTGCGTTTATGCACTT+AGG | 0.577680 | 3_3:+73863023 | Msa0471540:CDS |
| CTTCATACGCAGTGTAGAAG+AGG | 0.583497 | 3_3:-73862524 | None:intergenic |
| GCATGGTCGTGTACTATTGG+TGG | 0.597459 | 3_3:-73862238 | None:intergenic |
| GCAAAGCGTGATGGATGCAA+TGG | 0.606855 | 3_3:+73862947 | Msa0471540:CDS |
| CCTCGTAGAATTCATGGACA+AGG | 0.617032 | 3_3:-73862434 | None:intergenic |
| AAAGTGCGTAGCAGCGACGA+TGG | 0.623482 | 3_3:+73862360 | Msa0471540:CDS |
| TTGCATAAACGAGCAATGCA+TGG | 0.623541 | 3_3:-73862255 | None:intergenic |
| AATACCAGGACTAGTTCACC+AGG | 0.629754 | 3_3:-73865235 | None:intergenic |
| CAAAGCGTGATGGATGCAAT+GGG | 0.632352 | 3_3:+73862948 | Msa0471540:CDS |
| AATCTGCATCCATTTGTGAA+GGG | 0.632536 | 3_3:-73865019 | None:intergenic |
| TAAACGCAGTGACCATAACA+TGG | 0.634481 | 3_3:-73863013 | None:intergenic |
| GAGGAATTTCCACTAAAACC+TGG | 0.644441 | 3_3:+73865217 | Msa0471540:CDS |
| CATACGCAGTGTAGAAGAGG+AGG | 0.671913 | 3_3:-73862521 | None:intergenic |
| CACTGCGTATGAAGGCCAAG+AGG | 0.688393 | 3_3:+73862533 | Msa0471540:CDS |
| CAGCAAAATAACATGCATGG+AGG | 0.695797 | 3_3:+73865198 | Msa0471540:intron |
| CCTTGTCCATGAATTCTACG+AGG | 0.699250 | 3_3:+73862434 | Msa0471540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTATTTTTTATTTTGTT+TGG | + | chr3_3:73862562-73862581 | Msa0471540:intron | 10.0% |
| !! | CAAATATATATAATGAATTT+CGG | + | chr3_3:73862813-73862832 | Msa0471540:intron | 10.0% |
| !! | AAATATATATAATGAATTTC+GGG | + | chr3_3:73862814-73862833 | Msa0471540:intron | 10.0% |
| !! | TGAAAATATAAATTACAAAT+TGG | - | chr3_3:73864382-73864401 | None:intergenic | 10.0% |
| !!! | AATAAAATTGTGTATTTTTA+TGG | + | chr3_3:73865816-73865835 | Msa0471540:three_prime_UTR | 10.0% |
| !! | AAATTATACATACAATAAAT+AGG | - | chr3_3:73865886-73865905 | None:intergenic | 10.0% |
| !!! | AAATTCAGTATAGTTAATTT+TGG | + | chr3_3:73862860-73862879 | Msa0471540:intron | 15.0% |
| !! | ACAAAAAGGAAAATAAAAAA+GGG | - | chr3_3:73863071-73863090 | None:intergenic | 15.0% |
| !! | AACAAAAAGGAAAATAAAAA+AGG | - | chr3_3:73863072-73863091 | None:intergenic | 15.0% |
| !! | AATTTCAATAATCAAAATTG+TGG | - | chr3_3:73863127-73863146 | None:intergenic | 15.0% |
| !!! | ACAATTTTGATTATTGAAAT+TGG | + | chr3_3:73863126-73863145 | Msa0471540:intron | 15.0% |
| !!! | TTTATTCATTTCATACATTT+TGG | + | chr3_3:73863592-73863611 | Msa0471540:intron | 15.0% |
| !! | AATTTGTAAATGTTTAATTG+AGG | - | chr3_3:73863765-73863784 | None:intergenic | 15.0% |
| !!! | AAACTTTTTACCAATTATAT+AGG | + | chr3_3:73863816-73863835 | Msa0471540:intron | 15.0% |
| !!! | TTTTTTGCAATATTTTTTGT+GGG | + | chr3_3:73863860-73863879 | Msa0471540:intron | 15.0% |
| !! | AAAATTATTATTCTTTAGCT+AGG | - | chr3_3:73863995-73864014 | None:intergenic | 15.0% |
| !!! | TTTTTATACAAAGGTAAAAT+TGG | - | chr3_3:73864207-73864226 | None:intergenic | 15.0% |
| !!! | AGATTTTTGTTTTTATACAA+AGG | - | chr3_3:73864216-73864235 | None:intergenic | 15.0% |
| !!! | TTTTATTAAGTTTTCAAGAA+AGG | + | chr3_3:73864448-73864467 | Msa0471540:intron | 15.0% |
| !!! | ATTAACATGTTTAGAATATT+AGG | - | chr3_3:73865143-73865162 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAATATTGAAGT+AGG | - | chr3_3:73865267-73865286 | None:intergenic | 15.0% |
| !! | ATTTATTGTTTGGAAAATTA+AGG | + | chr3_3:73865313-73865332 | Msa0471540:intron | 15.0% |
| !!! | ATTAAATTTGTCTAAAGTAT+TGG | - | chr3_3:73865364-73865383 | None:intergenic | 15.0% |
| !!! | TTGAAATGCTATTTTTTAAA+AGG | - | chr3_3:73865408-73865427 | None:intergenic | 15.0% |
| !! | ATTATATGTTTCTTATATGT+CGG | - | chr3_3:73865843-73865862 | None:intergenic | 15.0% |
| !!! | TTCCATTTTTCAACTTTTAA+CGG | - | chr3_3:73862342-73862361 | None:intergenic | 20.0% |
| !! | AAACTCATACATATTATATG+CGG | + | chr3_3:73862604-73862623 | Msa0471540:intron | 20.0% |
| !!! | ATAGTTAATTTTGGAATGAT+TGG | + | chr3_3:73862869-73862888 | Msa0471540:intron | 20.0% |
| !! | AAAATAAAAAAGGGTGAATT+GGG | - | chr3_3:73863062-73863081 | None:intergenic | 20.0% |
| !! | TTGTAAAACTATGAACAAAA+AGG | - | chr3_3:73863085-73863104 | None:intergenic | 20.0% |
| !!! | GTTTTACAAGATGATTTTTT+TGG | + | chr3_3:73863096-73863115 | Msa0471540:intron | 20.0% |
| !!! | TGTCATAAACTTTTTTTTTG+TGG | + | chr3_3:73863425-73863444 | Msa0471540:intron | 20.0% |
| !! | TGTATAAGGGAAATAAATTA+TGG | - | chr3_3:73863560-73863579 | None:intergenic | 20.0% |
| !! | AAAAAACTGAGTATGTATAA+GGG | - | chr3_3:73863573-73863592 | None:intergenic | 20.0% |
| !! | AAAAAAACTGAGTATGTATA+AGG | - | chr3_3:73863574-73863593 | None:intergenic | 20.0% |
| !!! | TTGGTTTCTTTAATTTGTTA+TGG | + | chr3_3:73863611-73863630 | Msa0471540:intron | 20.0% |
| !!! | TTTCTTTAATTTGTTATGGT+TGG | + | chr3_3:73863615-73863634 | Msa0471540:intron | 20.0% |
| !!! | TTCTTTAATTTGTTATGGTT+GGG | + | chr3_3:73863616-73863635 | Msa0471540:intron | 20.0% |
| !!! | CTTTTTTGCAATATTTTTTG+TGG | + | chr3_3:73863859-73863878 | Msa0471540:intron | 20.0% |
| !!! | TGACTACAAATTTTATTTTC+CGG | - | chr3_3:73864358-73864377 | None:intergenic | 20.0% |
| !! | AGACTAGTATAAAATAATGA+AGG | + | chr3_3:73864790-73864809 | Msa0471540:intron | 20.0% |
| !! | ATAGGTTCATATTTATTGTT+TGG | + | chr3_3:73865303-73865322 | Msa0471540:intron | 20.0% |
| !!! | ATTTTTCTTCCTATAAACAT+TGG | + | chr3_3:73865382-73865401 | Msa0471540:intron | 20.0% |
| ! | TTCTAATCGAAAAGAGATTT+GGG | - | chr3_3:73862193-73862212 | None:intergenic | 25.0% |
| ! | AAATAAAAGATGAAACCTCT+TGG | - | chr3_3:73862551-73862570 | None:intergenic | 25.0% |
| ! | GAAAATAAAAAAGGGTGAAT+TGG | - | chr3_3:73863063-73863082 | None:intergenic | 25.0% |
| !! | TCAGCAATTAAATCGTATTT+TGG | - | chr3_3:73863165-73863184 | None:intergenic | 25.0% |
| !! | TTTGAGATTTAAGTGACTAA+CGG | - | chr3_3:73863197-73863216 | None:intergenic | 25.0% |
| !!! | CATAAACTTTTTTTTTGTGG+TGG | + | chr3_3:73863428-73863447 | Msa0471540:intron | 25.0% |
| ! | GATTGAGCTGAAAAAAAAAA+TGG | - | chr3_3:73863796-73863815 | None:intergenic | 25.0% |
| !! | ATTGATGCTGATAATTTTCA+AGG | - | chr3_3:73864110-73864129 | None:intergenic | 25.0% |
| ! | TGGAAGCTTAAGAAAAATAT+GGG | - | chr3_3:73864187-73864206 | None:intergenic | 25.0% |
| ! | TTGGAAGCTTAAGAAAAATA+TGG | - | chr3_3:73864188-73864207 | None:intergenic | 25.0% |
| !! | AATACTTGATAAACGTTTTC+CGG | + | chr3_3:73864479-73864498 | Msa0471540:intron | 25.0% |
| !!! | TTTTATACTAGTCTCTGTAT+TGG | - | chr3_3:73864784-73864803 | None:intergenic | 25.0% |
| ! | AAGCAAAAATATGTCATGAA+AGG | - | chr3_3:73864893-73864912 | None:intergenic | 25.0% |
| ! | AACAAGCTATACATTCATTT+CGG | - | chr3_3:73864938-73864957 | None:intergenic | 25.0% |
| !!! | AAATGAATGTATAGCTTGTT+CGG | + | chr3_3:73864938-73864957 | Msa0471540:intron | 25.0% |
| ! | TTGAAGGGAAATTTCTTATT+AGG | + | chr3_3:73865059-73865078 | Msa0471540:CDS | 25.0% |
| ! | TTTAAAAGGCCAATGTTTAT+AGG | - | chr3_3:73865394-73865413 | None:intergenic | 25.0% |
| !! | TAGAAACTTCTAAAAGGAAT+TGG | + | chr3_3:73865483-73865502 | Msa0471540:intron | 25.0% |
| ! | AAATATTTACTGGAAAAGCA+AGG | - | chr3_3:73865582-73865601 | None:intergenic | 25.0% |
| ! | TTTCCAGTAAATATTTACAC+AGG | + | chr3_3:73865586-73865605 | Msa0471540:intron | 25.0% |
| ! | ATTCCTGTGTAAATATTTAC+TGG | - | chr3_3:73865592-73865611 | None:intergenic | 25.0% |
| !!! | CATTTGGATTTTGATATCTT+TGG | + | chr3_3:73865705-73865724 | Msa0471540:CDS | 25.0% |
| CTTCTAATCGAAAAGAGATT+TGG | - | chr3_3:73862194-73862213 | None:intergenic | 30.0% | |
| !! | TTATGATGCTCTGAAATTGA+AGG | - | chr3_3:73862920-73862939 | None:intergenic | 30.0% |
| !! | TTCAGAGCATCATAAAGTTT+TGG | + | chr3_3:73862925-73862944 | Msa0471540:intron | 30.0% |
| ! | TCCAAATATTCACGTTTTTG+TGG | + | chr3_3:73862971-73862990 | Msa0471540:CDS | 30.0% |
| TCCACAAAAACGTGAATATT+TGG | - | chr3_3:73862975-73862994 | None:intergenic | 30.0% | |
| !!! | ATCGTATTTTGGTTTGAGTT+AGG | - | chr3_3:73863154-73863173 | None:intergenic | 30.0% |
| TTAGTGACTAAAGTGATTGA+TGG | - | chr3_3:73863329-73863348 | None:intergenic | 30.0% | |
| CTAAAGTGATTGAACATCTT+TGG | - | chr3_3:73863358-73863377 | None:intergenic | 30.0% | |
| !! | CTATACTGACTTAACATCTT+TGG | - | chr3_3:73863394-73863413 | None:intergenic | 30.0% |
| GACAATGCATTATATATGCA+AGG | - | chr3_3:73863473-73863492 | None:intergenic | 30.0% | |
| ATGAACTAATTCAACTGAGA+AGG | + | chr3_3:73863532-73863551 | Msa0471540:intron | 30.0% | |
| TCATGTCTTCTCTATCAAAT+TGG | + | chr3_3:73863649-73863668 | Msa0471540:intron | 30.0% | |
| ! | GTCCTATTAGTATTTTGCAA+CGG | - | chr3_3:73864042-73864061 | None:intergenic | 30.0% |
| GATAGATCCATAGAAAGAAA+GGG | - | chr3_3:73864073-73864092 | None:intergenic | 30.0% | |
| TAAGAAAAATATGGGGGTAA+AGG | - | chr3_3:73864179-73864198 | None:intergenic | 30.0% | |
| GAAGCTTAAGAAAAATATGG+GGG | - | chr3_3:73864185-73864204 | None:intergenic | 30.0% | |
| GGAAGCTTAAGAAAAATATG+GGG | - | chr3_3:73864186-73864205 | None:intergenic | 30.0% | |
| GCAAGTTTGAGAATATAAAC+CGG | + | chr3_3:73864296-73864315 | Msa0471540:intron | 30.0% | |
| TATAAACCGGAAAACTTTCA+TGG | + | chr3_3:73864309-73864328 | Msa0471540:intron | 30.0% | |
| ! | AAAACTCCATGAAAGTTTTC+CGG | - | chr3_3:73864318-73864337 | None:intergenic | 30.0% |
| ! | AAAACTTTCATGGAGTTTTC+TGG | + | chr3_3:73864319-73864338 | Msa0471540:intron | 30.0% |
| !! | TTCTGGTTTACATATGATTC+CGG | + | chr3_3:73864336-73864355 | Msa0471540:intron | 30.0% |
| !! | AGTTTTCAAGAAAGGTTTTC+TGG | + | chr3_3:73864456-73864475 | Msa0471540:intron | 30.0% |
| TTACTCTTCATCATTATGTG+TGG | + | chr3_3:73864605-73864624 | Msa0471540:intron | 30.0% | |
| !!! | AGAAAGCGTATCTCTTTTTT+CGG | - | chr3_3:73864656-73864675 | None:intergenic | 30.0% |
| TCACATAATTATTTGCAGTG+TGG | + | chr3_3:73864981-73865000 | Msa0471540:intron | 30.0% | |
| TTTACGTTTGAAGAAGTTGA+AGG | + | chr3_3:73865043-73865062 | Msa0471540:CDS | 30.0% | |
| TTACGTTTGAAGAAGTTGAA+GGG | + | chr3_3:73865044-73865063 | Msa0471540:CDS | 30.0% | |
| ATTAAGGTAGAGCAAGAAAA+CGG | + | chr3_3:73865329-73865348 | Msa0471540:intron | 30.0% | |
| !! | GTCTAAAGTATTGGTTCAAT+TGG | - | chr3_3:73865355-73865374 | None:intergenic | 30.0% |
| AAGCCTCAAATTAATCACTT+CGG | - | chr3_3:73865454-73865473 | None:intergenic | 30.0% | |
| TCTCTGTAGAAACTTCTAAA+AGG | + | chr3_3:73865477-73865496 | Msa0471540:intron | 30.0% | |
| AAAAGGAATTGGCCAAATAT+TGG | + | chr3_3:73865494-73865513 | Msa0471540:CDS | 30.0% | |
| ATTCCCATGCTTCAAAAAAT+GGG | + | chr3_3:73865670-73865689 | Msa0471540:CDS | 30.0% | |
| !! | TGGATTTTGATATCTTTGGA+CGG | + | chr3_3:73865709-73865728 | Msa0471540:CDS | 30.0% |
| TCAATTTCCAAATGCAACCA+TGG | + | chr3_3:73862152-73862171 | Msa0471540:exon | 35.0% | |
| ! | TCGAAAAGAGATTTGGGATT+GGG | - | chr3_3:73862187-73862206 | None:intergenic | 35.0% |
| ! | ATCGAAAAGAGATTTGGGAT+TGG | - | chr3_3:73862188-73862207 | None:intergenic | 35.0% |
| GGCCGTTAAAAGTTGAAAAA+TGG | + | chr3_3:73862337-73862356 | Msa0471540:CDS | 35.0% | |
| ATGCGGAGAAAAATATTGCA+AGG | + | chr3_3:73862621-73862640 | Msa0471540:intron | 35.0% | |
| ACTTCGATGGTAAAAAGTTG+CGG | - | chr3_3:73862669-73862688 | None:intergenic | 35.0% | |
| ! | ACTTTTTACCATCGAAGTTG+AGG | + | chr3_3:73862671-73862690 | Msa0471540:intron | 35.0% |
| ! | GTGACAACTAGTCATACTTT+TGG | - | chr3_3:73863256-73863275 | None:intergenic | 35.0% |
| TGCATTATATATGCAAGGTC+CGG | - | chr3_3:73863468-73863487 | None:intergenic | 35.0% | |
| AGAGAAGACATGATTTCTTC+TGG | - | chr3_3:73863642-73863661 | None:intergenic | 35.0% | |
| TGAACATAGAGCACATATGA+GGG | - | chr3_3:73863709-73863728 | None:intergenic | 35.0% | |
| TTGAACATAGAGCACATATG+AGG | - | chr3_3:73863710-73863729 | None:intergenic | 35.0% | |
| TTGATGTGCGCCTATATAAT+TGG | - | chr3_3:73863829-73863848 | None:intergenic | 35.0% | |
| TTTGTGCCCTTAAGCAATTT+AGG | + | chr3_3:73864012-73864031 | Msa0471540:intron | 35.0% | |
| ! | CTATTAGTATTTTGCAACGG+TGG | - | chr3_3:73864039-73864058 | None:intergenic | 35.0% |
| CACCGTTGCAAAATACTAAT+AGG | + | chr3_3:73864037-73864056 | Msa0471540:intron | 35.0% | |
| GGATAGATCCATAGAAAGAA+AGG | - | chr3_3:73864074-73864093 | None:intergenic | 35.0% | |
| ! | AGGTACAAATATAGGAGTGT+GGG | - | chr3_3:73864159-73864178 | None:intergenic | 35.0% |
| AAGGTACAAATATAGGAGTG+TGG | - | chr3_3:73864160-73864179 | None:intergenic | 35.0% | |
| GGTAAACTTCAAAAAAGCGA+GGG | - | chr3_3:73864262-73864281 | None:intergenic | 35.0% | |
| ! | GTTTTCCGGTGTATGTTATA+TGG | + | chr3_3:73864493-73864512 | Msa0471540:intron | 35.0% |
| TTCGTCCATATAACATACAC+CGG | - | chr3_3:73864501-73864520 | None:intergenic | 35.0% | |
| TCTTCATCATTATGTGTGGT+TGG | + | chr3_3:73864609-73864628 | Msa0471540:intron | 35.0% | |
| ! | CGGCAATTGTATTTTCCTTT+TGG | - | chr3_3:73864636-73864655 | None:intergenic | 35.0% |
| GTAACAGACTAATTTGAGAG+TGG | + | chr3_3:73864814-73864833 | Msa0471540:intron | 35.0% | |
| AATCTGCATCCATTTGTGAA+GGG | - | chr3_3:73865022-73865041 | None:intergenic | 35.0% | |
| AAATCTGCATCCATTTGTGA+AGG | - | chr3_3:73865023-73865042 | None:intergenic | 35.0% | |
| TTAAAAAATCGTGCGCTCAA+TGG | + | chr3_3:73865111-73865130 | Msa0471540:intron | 35.0% | |
| TTGCAGCAAAATAACATGCA+TGG | + | chr3_3:73865195-73865214 | Msa0471540:intron | 35.0% | |
| GAAGTAGGAAAGAAAATACC+AGG | - | chr3_3:73865252-73865271 | None:intergenic | 35.0% | |
| CAAATTAATCACTTCGGAGT+TGG | - | chr3_3:73865448-73865467 | None:intergenic | 35.0% | |
| ! | ACTCCGAAGTGATTAATTTG+AGG | + | chr3_3:73865448-73865467 | Msa0471540:intron | 35.0% |
| GTGGATAGCTATCCAATATT+TGG | - | chr3_3:73865509-73865528 | None:intergenic | 35.0% | |
| GATTCCCATGCTTCAAAAAA+TGG | + | chr3_3:73865669-73865688 | Msa0471540:CDS | 35.0% | |
| TTCCCATGCTTCAAAAAATG+GGG | + | chr3_3:73865671-73865690 | Msa0471540:CDS | 35.0% | |
| AATGATGCCATGGTTGCATT+TGG | - | chr3_3:73862162-73862181 | None:intergenic | 40.0% | |
| ! | CGAAAAGAGATTTGGGATTG+GGG | - | chr3_3:73862186-73862205 | None:intergenic | 40.0% |
| !! | ACTATTGGTGGTGTTCTTGT+TGG | - | chr3_3:73862229-73862248 | None:intergenic | 40.0% |
| AATGCATGGTCGTGTACTAT+TGG | - | chr3_3:73862244-73862263 | None:intergenic | 40.0% | |
| TTGCATAAACGAGCAATGCA+TGG | - | chr3_3:73862258-73862277 | None:intergenic | 40.0% | |
| ! | TGGTTTGGCAACAAGATTGA+TGG | - | chr3_3:73862295-73862314 | None:intergenic | 40.0% |
| ! | TTTAGGTTTGGTAGCAACGT+TGG | - | chr3_3:73862315-73862334 | None:intergenic | 40.0% |
| ! | TTTAACGGCCTCTTTAGGTT+TGG | - | chr3_3:73862327-73862346 | None:intergenic | 40.0% |
| ! | CAACTTTTAACGGCCTCTTT+AGG | - | chr3_3:73862332-73862351 | None:intergenic | 40.0% |
| ! | GGACTTTCTGGTAGAAATTC+AGG | - | chr3_3:73862402-73862421 | None:intergenic | 40.0% |
| TGAAAGCCTCGTAGAATTCA+TGG | - | chr3_3:73862443-73862462 | None:intergenic | 40.0% | |
| AAAGTTGCGGGAACATAGAT+AGG | - | chr3_3:73862656-73862675 | None:intergenic | 40.0% | |
| CTTCGATGGTAAAAAGTTGC+GGG | - | chr3_3:73862668-73862687 | None:intergenic | 40.0% | |
| TTTACCATCGAAGTTGAGGA+TGG | + | chr3_3:73862675-73862694 | Msa0471540:intron | 40.0% | |
| !! | AAAGTTTTGGCAAAGCGTGA+TGG | + | chr3_3:73862938-73862957 | Msa0471540:CDS | 40.0% |
| ! | CGTTTTTGTGGAAGATACCA+AGG | + | chr3_3:73862983-73863002 | Msa0471540:CDS | 40.0% |
| ! | CATAACATGGTTGCTTTCCT+TGG | - | chr3_3:73863003-73863022 | None:intergenic | 40.0% |
| CAAGGAAAGCAACCATGTTA+TGG | + | chr3_3:73863001-73863020 | Msa0471540:CDS | 40.0% | |
| TAAACGCAGTGACCATAACA+TGG | - | chr3_3:73863016-73863035 | None:intergenic | 40.0% | |
| ! | ATCGTGCTTTCGTTTGAGTT+AGG | - | chr3_3:73863285-73863304 | None:intergenic | 40.0% |
| CATTATATATGCAAGGTCCG+GGG | - | chr3_3:73863466-73863485 | None:intergenic | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | - | chr3_3:73863467-73863486 | None:intergenic | 40.0% | |
| TGAGCTTAGCTCAACTGATA+AGG | - | chr3_3:73863495-73863514 | None:intergenic | 40.0% | |
| GGTGGTCCTAAATTGCTTAA+GGG | - | chr3_3:73864021-73864040 | None:intergenic | 40.0% | |
| GGATCTATCCAATCTCACAA+CGG | + | chr3_3:73864084-73864103 | Msa0471540:intron | 40.0% | |
| ! | GGTACAAATATAGGAGTGTG+GGG | - | chr3_3:73864158-73864177 | None:intergenic | 40.0% |
| ! | GGGGGTAAAGGTACAAATAT+AGG | - | chr3_3:73864167-73864186 | None:intergenic | 40.0% |
| CGGTAAACTTCAAAAAAGCG+AGG | - | chr3_3:73864263-73864282 | None:intergenic | 40.0% | |
| ! | AACTTGCTTTCTTAGCGTCT+CGG | - | chr3_3:73864283-73864302 | None:intergenic | 40.0% |
| !! | TCCTAGAATACTGACTTGCA+CGG | - | chr3_3:73864425-73864444 | None:intergenic | 40.0% |
| TTATGTGTGGTTGGACCAAA+AGG | + | chr3_3:73864618-73864637 | Msa0471540:intron | 40.0% | |
| TTCACTAGAACACTATCGCT+TGG | + | chr3_3:73864694-73864713 | Msa0471540:intron | 40.0% | |
| AAGAAGCTACCCTTCACAAA+TGG | + | chr3_3:73865010-73865029 | Msa0471540:CDS | 40.0% | |
| CAGCAAAATAACATGCATGG+AGG | + | chr3_3:73865198-73865217 | Msa0471540:intron | 40.0% | |
| GAGGAATTTCCACTAAAACC+TGG | + | chr3_3:73865217-73865236 | Msa0471540:CDS | 40.0% | |
| !! | ACTAGTTCACCAGGTTTTAG+TGG | - | chr3_3:73865229-73865248 | None:intergenic | 40.0% |
| TCCCATGCTTCAAAAAATGG+GGG | + | chr3_3:73865672-73865691 | Msa0471540:CDS | 40.0% | |
| !!! | TCCCCCATTTTTTGAAGCAT+GGG | - | chr3_3:73865676-73865695 | None:intergenic | 40.0% |
| !!! | TTCCCCCATTTTTTGAAGCA+TGG | - | chr3_3:73865677-73865696 | None:intergenic | 40.0% |
| TACCATTGCTTGAAGCTGTA+GGG | - | chr3_3:73865759-73865778 | None:intergenic | 40.0% | |
| ! | GTTTGGTAGCAACGTTGGTT+TGG | - | chr3_3:73862310-73862329 | None:intergenic | 45.0% |
| CGTTGCTACCAAACCTAAAG+AGG | + | chr3_3:73862316-73862335 | Msa0471540:CDS | 45.0% | |
| AATTCATGGACAAGGTGCAC+TGG | - | chr3_3:73862429-73862448 | None:intergenic | 45.0% | |
| CCTCGTAGAATTCATGGACA+AGG | - | chr3_3:73862437-73862456 | None:intergenic | 45.0% | |
| CCTTGTCCATGAATTCTACG+AGG | + | chr3_3:73862434-73862453 | Msa0471540:CDS | 45.0% | |
| TTCTCCTAACTGTGTCTACC+AGG | + | chr3_3:73862497-73862516 | Msa0471540:CDS | 45.0% | |
| CTTCATACGCAGTGTAGAAG+AGG | - | chr3_3:73862527-73862546 | None:intergenic | 45.0% | |
| CTCTTCTACACTGCGTATGA+AGG | + | chr3_3:73862525-73862544 | Msa0471540:CDS | 45.0% | |
| TTGCGGGAACATAGATAGGT+TGG | - | chr3_3:73862652-73862671 | None:intergenic | 45.0% | |
| GAAACCATCCTCAACTTCGA+TGG | - | chr3_3:73862682-73862701 | None:intergenic | 45.0% | |
| !! | CAAAGCGTGATGGATGCAAT+GGG | + | chr3_3:73862948-73862967 | Msa0471540:CDS | 45.0% |
| GTCACTGCGTTTATGCACTT+AGG | + | chr3_3:73863023-73863042 | Msa0471540:CDS | 45.0% | |
| AAGGTCCGGGGTTTAAATCT+CGG | - | chr3_3:73863454-73863473 | None:intergenic | 45.0% | |
| ACATAGAGCACATATGAGGG+AGG | - | chr3_3:73863706-73863725 | None:intergenic | 45.0% | |
| CGGTGGTCCTAAATTGCTTA+AGG | - | chr3_3:73864022-73864041 | None:intergenic | 45.0% | |
| CGACTCTCCCTTTCTTTCTA+TGG | + | chr3_3:73864063-73864082 | Msa0471540:intron | 45.0% | |
| TTTCAAGGCCGTTGTGAGAT+TGG | - | chr3_3:73864095-73864114 | None:intergenic | 45.0% | |
| TCCGTGCAAGTCAGTATTCT+AGG | + | chr3_3:73864421-73864440 | Msa0471540:intron | 45.0% | |
| AAAACCTGGTGAACTAGTCC+TGG | + | chr3_3:73865231-73865250 | Msa0471540:CDS | 45.0% | |
| !! | AATACCAGGACTAGTTCACC+AGG | - | chr3_3:73865238-73865257 | None:intergenic | 45.0% |
| TGGGGGAAATGACATGCATT+TGG | + | chr3_3:73865689-73865708 | Msa0471540:CDS | 45.0% | |
| TTCCCTACAGCTTCAAGCAA+TGG | + | chr3_3:73865754-73865773 | Msa0471540:three_prime_UTR | 45.0% | |
| CTACCATTGCTTGAAGCTGT+AGG | - | chr3_3:73865760-73865779 | None:intergenic | 45.0% | |
| !!! | AAAATTAATTTGTTTATAAT+TGG | - | chr3_3:73862750-73862769 | None:intergenic | 5.0% |
| !!! | TTTAAAATTAATTTTTTTAG+AGG | - | chr3_3:73862778-73862797 | None:intergenic | 5.0% |
| !! | TTTATTTACTATTATAAAAT+AGG | + | chr3_3:73865285-73865304 | Msa0471540:intron | 5.0% |
| GCATGGTCGTGTACTATTGG+TGG | - | chr3_3:73862241-73862260 | None:intergenic | 50.0% | |
| ! | TGCACTGGTGAAGGACTTTC+TGG | - | chr3_3:73862414-73862433 | None:intergenic | 50.0% |
| AGGTCCTGGTAGACACAGTT+AGG | - | chr3_3:73862504-73862523 | None:intergenic | 50.0% | |
| CATACGCAGTGTAGAAGAGG+AGG | - | chr3_3:73862524-73862543 | None:intergenic | 50.0% | |
| !! | GCAAAGCGTGATGGATGCAA+TGG | + | chr3_3:73862947-73862966 | Msa0471540:CDS | 50.0% |
| TCAGTTGAGCTAAGCTCACG+AGG | + | chr3_3:73863497-73863516 | Msa0471540:intron | 50.0% | |
| CATTTACCTGCTGCTGCTAG+TGG | - | chr3_3:73865528-73865547 | None:intergenic | 50.0% | |
| GGATTGGGGCAATGATGCCA+TGG | - | chr3_3:73862172-73862191 | None:intergenic | 55.0% | |
| AAAGTGCGTAGCAGCGACGA+TGG | + | chr3_3:73862360-73862379 | Msa0471540:CDS | 55.0% | |
| ! | TGGACAAGGTGCACTGGTGA+AGG | - | chr3_3:73862423-73862442 | None:intergenic | 55.0% |
| CAGTGTAGAAGAGGAGGTCC+TGG | - | chr3_3:73862518-73862537 | None:intergenic | 55.0% | |
| CACTGCGTATGAAGGCCAAG+AGG | + | chr3_3:73862533-73862552 | Msa0471540:CDS | 55.0% | |
| GGTGGCCGAGATTTAAACCC+CGG | + | chr3_3:73863446-73863465 | Msa0471540:intron | 55.0% | |
| AGCTATCCACTAGCAGCAGC+AGG | + | chr3_3:73865519-73865538 | Msa0471540:CDS | 55.0% | |
| CGTAGCAGCGACGATGGATC+AGG | + | chr3_3:73862366-73862385 | Msa0471540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 73862135 | 73865923 | 73862135 | ID=Msa0471540;Name=Msa0471540 |
| chr3_3 | mRNA | 73862135 | 73865923 | 73862135 | ID=Msa0471540-mRNA-1;Parent=Msa0471540;Name=Msa0471540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=36|1|1|1|1|1|6|183|255 |
| chr3_3 | exon | 73862135 | 73862554 | 73862135 | ID=Msa0471540-mRNA-1:exon:18765;Parent=Msa0471540-mRNA-1 |
| chr3_3 | exon | 73862930 | 73863044 | 73862930 | ID=Msa0471540-mRNA-1:exon:18766;Parent=Msa0471540-mRNA-1 |
| chr3_3 | exon | 73864999 | 73865080 | 73864999 | ID=Msa0471540-mRNA-1:exon:18767;Parent=Msa0471540-mRNA-1 |
| chr3_3 | exon | 73865201 | 73865252 | 73865201 | ID=Msa0471540-mRNA-1:exon:18768;Parent=Msa0471540-mRNA-1 |
| chr3_3 | exon | 73865486 | 73865540 | 73865486 | ID=Msa0471540-mRNA-1:exon:18769;Parent=Msa0471540-mRNA-1 |
| chr3_3 | exon | 73865661 | 73865923 | 73865661 | ID=Msa0471540-mRNA-1:exon:18770;Parent=Msa0471540-mRNA-1 |
| chr3_3 | five_prime_UTR | 73862135 | 73862170 | 73862135 | ID=Msa0471540-mRNA-1:five_prime_utr;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73862171 | 73862554 | 73862171 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73862930 | 73863044 | 73862930 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73864999 | 73865080 | 73864999 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73865201 | 73865252 | 73865201 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73865486 | 73865540 | 73865486 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | CDS | 73865661 | 73865740 | 73865661 | ID=Msa0471540-mRNA-1:cds;Parent=Msa0471540-mRNA-1 |
| chr3_3 | three_prime_UTR | 73865741 | 73865923 | 73865741 | ID=Msa0471540-mRNA-1:three_prime_utr;Parent=Msa0471540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
