Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471460 | XP_003602158.1 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 2.09e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471460 | G7J665 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 9.98e-177 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0471460 | 0.850080 | 2.140214e-60 | -8.615850e-47 |
| Msa0029960 | Msa0471460 | 0.805294 | 1.430918e-49 | -8.615850e-47 |
| Msa0029970 | Msa0471460 | 0.804802 | 1.813582e-49 | -8.615850e-47 |
| Msa0043290 | Msa0471460 | 0.811124 | 8.188243e-51 | -8.615850e-47 |
| Msa0064120 | Msa0471460 | 0.841106 | 5.808474e-58 | -8.615850e-47 |
| Msa0071850 | Msa0471460 | 0.822234 | 2.641253e-53 | -8.615850e-47 |
| Msa0071860 | Msa0471460 | 0.821851 | 3.241284e-53 | -8.615850e-47 |
| Msa0108880 | Msa0471460 | 0.854447 | 1.223193e-61 | -8.615850e-47 |
| Msa0125210 | Msa0471460 | 0.819381 | 1.196450e-52 | -8.615850e-47 |
| Msa0137210 | Msa0471460 | 0.818084 | 2.357823e-52 | -8.615850e-47 |
| Msa0155180 | Msa0471460 | 0.823831 | 1.120577e-53 | -8.615850e-47 |
| Msa0182400 | Msa0471460 | 0.803899 | 2.796876e-49 | -8.615850e-47 |
| Msa0418970 | Msa0471460 | 0.827533 | 1.484668e-54 | -8.615850e-47 |
| Msa0424490 | Msa0471460 | 0.896313 | 4.159299e-76 | -8.615850e-47 |
| Msa0460550 | Msa0471460 | 0.818975 | 1.480276e-52 | -8.615850e-47 |
| Msa0460630 | Msa0471460 | 0.825072 | 5.721473e-54 | -8.615850e-47 |
| Msa0471460 | Msa0471540 | 0.906591 | 1.259907e-80 | -8.615850e-47 |
| Msa0471460 | Msa0562620 | 0.826363 | 2.826787e-54 | -8.615850e-47 |
| Msa0471460 | Msa0579330 | 0.802816 | 4.688350e-49 | -8.615850e-47 |
| Msa0471460 | Msa0616510 | 0.809647 | 1.706254e-50 | -8.615850e-47 |
| Msa0471460 | Msa0649840 | 0.811315 | 7.444288e-51 | -8.615850e-47 |
| Msa0471460 | Msa0650660 | 0.828553 | 8.433245e-55 | -8.615850e-47 |
| Msa0471460 | Msa0650750 | 0.834032 | 3.789124e-56 | -8.615850e-47 |
| Msa0471460 | Msa0699840 | 0.815692 | 8.116297e-52 | -8.615850e-47 |
| Msa0471460 | Msa0782750 | 0.808118 | 3.623853e-50 | -8.615850e-47 |
| Msa0471460 | Msa1014320 | 0.808913 | 2.451313e-50 | -8.615850e-47 |
| Msa0471460 | Msa1183980 | 0.815494 | 8.982929e-52 | -8.615850e-47 |
| Msa0471460 | Msa1228420 | 0.818510 | 1.888097e-52 | -8.615850e-47 |
| Msa0471460 | Msa1284120 | 0.811815 | 5.796152e-51 | -8.615850e-47 |
| Msa0471460 | Msa1341890 | 0.811711 | 6.105730e-51 | -8.615850e-47 |
| Msa0471460 | Msa1405340 | 0.818483 | 1.915029e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471460 | MtrunA17_Chr3g0126191 | 92.549 | 255 | 19 | 0 | 1 | 255 | 1 | 255 | 1.92e-180 | 495 |
| Msa0471460 | MtrunA17_Chr5g0397281 | 33.333 | 150 | 100 | 0 | 83 | 232 | 80 | 229 | 1.19e-25 | 102 |
| Msa0471460 | MtrunA17_Chr7g0221181 | 31.250 | 144 | 99 | 0 | 85 | 228 | 77 | 220 | 8.94e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471460 | AT1G71480.1 | 30.220 | 182 | 123 | 3 | 45 | 225 | 32 | 210 | 6.08e-26 | 101 |
| Msa0471460 | AT5G41470.1 | 30.337 | 178 | 123 | 1 | 57 | 233 | 45 | 222 | 8.63e-25 | 100 |
| Msa0471460 | AT1G71480.3 | 29.452 | 146 | 101 | 1 | 45 | 190 | 32 | 175 | 3.14e-20 | 85.5 |
Find 63 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGGAAATTTCTTATT+AGG | 0.206117 | 3_3:-73783348 | Msa0471460:intron |
| TGCACTGGTGAAGGACTTTC+TGG | 0.239208 | 3_3:+73785996 | None:intergenic |
| AAAAGGAATTGGCCAAATAT+TGG | 0.243336 | 3_3:-73782912 | Msa0471460:CDS |
| CTTCTAATCGAAAAGAGATT+TGG | 0.255141 | 3_3:+73786216 | None:intergenic |
| GTGGATAGCTATCCAATATT+TGG | 0.264848 | 3_3:+73782900 | None:intergenic |
| TTCAGAGCATCATAAAGTTT+TGG | 0.287415 | 3_3:-73785482 | Msa0471460:intron |
| GGACTTTCTGGTAGAAATTC+AGG | 0.288932 | 3_3:+73786008 | None:intergenic |
| AAATTATACATACAATAAAT+AGG | 0.318159 | 3_3:+73782523 | None:intergenic |
| TGAAAGCCTCGTAGAATTCA+TGG | 0.323872 | 3_3:+73785967 | None:intergenic |
| TCTCTGTAGAAACTTCTAAA+AGG | 0.339328 | 3_3:-73782929 | Msa0471460:intron |
| ACTATTGGTGGTGTTCTTGT+TGG | 0.356125 | 3_3:+73786181 | None:intergenic |
| TCGAAAAGAGATTTGGGATT+GGG | 0.361982 | 3_3:+73786223 | None:intergenic |
| TTCTAATCGAAAAGAGATTT+GGG | 0.363969 | 3_3:+73786217 | None:intergenic |
| TAGAAACTTCTAAAAGGAAT+TGG | 0.371439 | 3_3:-73782923 | Msa0471460:CDS |
| TGGTTTGGCAACAAGATTGA+TGG | 0.375216 | 3_3:+73786115 | None:intergenic |
| CATAACATGGTTGCTTTCCT+TGG | 0.382247 | 3_3:+73785407 | None:intergenic |
| AATGATGCCATGGTTGCATT+TGG | 0.421744 | 3_3:+73786248 | None:intergenic |
| GTTTGGTAGCAACGTTGGTT+TGG | 0.432723 | 3_3:+73786100 | None:intergenic |
| CAAGGAAAGCAACCATGTTA+TGG | 0.442440 | 3_3:-73785406 | Msa0471460:CDS |
| TTTAACGGCCTCTTTAGGTT+TGG | 0.454324 | 3_3:+73786083 | None:intergenic |
| AGGTCCTGGTAGACACAGTT+AGG | 0.457198 | 3_3:+73785906 | None:intergenic |
| AATGCATGGTCGTGTACTAT+TGG | 0.462474 | 3_3:+73786166 | None:intergenic |
| ATTATATGTTTCTTATATGT+CGG | 0.465585 | 3_3:+73782566 | None:intergenic |
| TTTACGTTTGAAGAAGTTGA+AGG | 0.468132 | 3_3:-73783364 | Msa0471460:CDS |
| TTCTCCTAACTGTGTCTACC+AGG | 0.476998 | 3_3:-73785910 | Msa0471460:CDS |
| CGTAGCAGCGACGATGGATC+AGG | 0.480416 | 3_3:-73786041 | Msa0471460:CDS |
| CTCTTCTACACTGCGTATGA+AGG | 0.481508 | 3_3:-73785882 | Msa0471460:CDS |
| AAGAAGCTACCCTTCACAAA+TGG | 0.483077 | 3_3:-73783397 | Msa0471460:CDS |
| CGTTGCTACCAAACCTAAAG+AGG | 0.484520 | 3_3:-73786091 | Msa0471460:CDS |
| TAGGAATATAAAATGCTGAA+TGG | 0.489665 | 3_3:+73782491 | None:intergenic |
| GGATTGGGGCAATGATGCCA+TGG | 0.491551 | 3_3:+73786238 | None:intergenic |
| CAGTGTAGAAGAGGAGGTCC+TGG | 0.501644 | 3_3:+73785892 | None:intergenic |
| CATTTACCTGCTGCTGCTAG+TGG | 0.516280 | 3_3:+73782881 | None:intergenic |
| TACCATTGCTTGAAGCTGTA+GGG | 0.518929 | 3_3:+73782650 | None:intergenic |
| ATCGAAAAGAGATTTGGGAT+TGG | 0.521332 | 3_3:+73786222 | None:intergenic |
| AAAACCTGGTGAACTAGTCC+TGG | 0.530675 | 3_3:-73783176 | Msa0471460:intron |
| CTACCATTGCTTGAAGCTGT+AGG | 0.530919 | 3_3:+73782649 | None:intergenic |
| TCAATTTCCAAATGCAACCA+TGG | 0.542141 | 3_3:-73786255 | Msa0471460:exon |
| CGAAAAGAGATTTGGGATTG+GGG | 0.542620 | 3_3:+73786224 | None:intergenic |
| AATTCATGGACAAGGTGCAC+TGG | 0.547716 | 3_3:+73785981 | None:intergenic |
| AGCTATCCACTAGCAGCAGC+AGG | 0.549179 | 3_3:-73782887 | Msa0471460:intron |
| AAATCTGCATCCATTTGTGA+AGG | 0.550229 | 3_3:+73783387 | None:intergenic |
| TTACGTTTGAAGAAGTTGAA+GGG | 0.552151 | 3_3:-73783363 | Msa0471460:CDS |
| TTCCCTACAGCTTCAAGCAA+TGG | 0.555183 | 3_3:-73782652 | Msa0471460:three_prime_UTR |
| TGGACAAGGTGCACTGGTGA+AGG | 0.559644 | 3_3:+73785987 | None:intergenic |
| TTGCAGCAAAATAACATGCA+TGG | 0.562652 | 3_3:-73783212 | Msa0471460:intron |
| TTTAGGTTTGGTAGCAACGT+TGG | 0.563232 | 3_3:+73786095 | None:intergenic |
| GTCACTGCGTTTATGCACTT+AGG | 0.577680 | 3_3:-73785384 | Msa0471460:intron |
| CTTCATACGCAGTGTAGAAG+AGG | 0.583497 | 3_3:+73785883 | None:intergenic |
| GCATGGTCGTGTACTATTGG+TGG | 0.597459 | 3_3:+73786169 | None:intergenic |
| GCAAAGCGTGATGGATGCAA+TGG | 0.606855 | 3_3:-73785460 | Msa0471460:CDS |
| CCTCGTAGAATTCATGGACA+AGG | 0.617032 | 3_3:+73785973 | None:intergenic |
| AAAGTGCGTAGCAGCGACGA+TGG | 0.623482 | 3_3:-73786047 | Msa0471460:CDS |
| TTGCATAAACGAGCAATGCA+TGG | 0.623541 | 3_3:+73786152 | None:intergenic |
| AATACCAGGACTAGTTCACC+AGG | 0.629754 | 3_3:+73783172 | None:intergenic |
| CAAAGCGTGATGGATGCAAT+GGG | 0.632352 | 3_3:-73785459 | Msa0471460:CDS |
| AATCTGCATCCATTTGTGAA+GGG | 0.632536 | 3_3:+73783388 | None:intergenic |
| TAAACGCAGTGACCATAACA+TGG | 0.634481 | 3_3:+73785394 | None:intergenic |
| GAGGAATTTCCACTAAAACC+TGG | 0.644441 | 3_3:-73783190 | Msa0471460:CDS |
| CATACGCAGTGTAGAAGAGG+AGG | 0.671913 | 3_3:+73785886 | None:intergenic |
| CACTGCGTATGAAGGCCAAG+AGG | 0.688393 | 3_3:-73785874 | Msa0471460:intron |
| CAGCAAAATAACATGCATGG+AGG | 0.695797 | 3_3:-73783209 | Msa0471460:CDS |
| CCTTGTCCATGAATTCTACG+AGG | 0.699250 | 3_3:-73785973 | Msa0471460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTTTTTATTTTGTT+TGG | - | chr3_3:73782932-73782951 | Msa0471460:intron | 10.0% |
| !! | CAAATATATATAATGAATTT+CGG | - | chr3_3:73783183-73783202 | Msa0471460:CDS | 10.0% |
| !! | AAATATATATAATGAATTTC+GGG | - | chr3_3:73783184-73783203 | Msa0471460:CDS | 10.0% |
| !! | TGAAAATATAAATTACAAAT+TGG | + | chr3_3:73784752-73784771 | None:intergenic | 10.0% |
| !!! | AATAAAATTGTGTATTTTTA+TGG | - | chr3_3:73786187-73786206 | Msa0471460:CDS | 10.0% |
| !! | AAATTATACATACAATAAAT+AGG | + | chr3_3:73786257-73786276 | None:intergenic | 10.0% |
| !!! | AAATTCAGTATAGTTAATTT+TGG | - | chr3_3:73783230-73783249 | Msa0471460:intron | 15.0% |
| !! | ACAAAAAGGAAAATAAAAAA+GGG | + | chr3_3:73783441-73783460 | None:intergenic | 15.0% |
| !! | AACAAAAAGGAAAATAAAAA+AGG | + | chr3_3:73783442-73783461 | None:intergenic | 15.0% |
| !! | AATTTCAATAATCAAAATTG+TGG | + | chr3_3:73783497-73783516 | None:intergenic | 15.0% |
| !!! | ACAATTTTGATTATTGAAAT+TGG | - | chr3_3:73783496-73783515 | Msa0471460:intron | 15.0% |
| !!! | TTTATTCATTTCATACATTT+TGG | - | chr3_3:73783962-73783981 | Msa0471460:intron | 15.0% |
| !! | AATTTGTAAATGTTTAATTG+AGG | + | chr3_3:73784135-73784154 | None:intergenic | 15.0% |
| !!! | AAACTTTTTACCAATTATAT+AGG | - | chr3_3:73784186-73784205 | Msa0471460:intron | 15.0% |
| !!! | TTTTTTGCAATATTTTTTGT+GGG | - | chr3_3:73784230-73784249 | Msa0471460:intron | 15.0% |
| !! | AAAATTATTATTCTTTAGCT+AGG | + | chr3_3:73784365-73784384 | None:intergenic | 15.0% |
| !!! | TTTTTATACAAAGGTAAAAT+TGG | + | chr3_3:73784577-73784596 | None:intergenic | 15.0% |
| !!! | AGATTTTTGTTTTTATACAA+AGG | + | chr3_3:73784586-73784605 | None:intergenic | 15.0% |
| !!! | TTTTATTAAGTTTTCAAGAA+AGG | - | chr3_3:73784818-73784837 | Msa0471460:intron | 15.0% |
| !!! | ATTAACATGTTTAGAATATT+AGG | + | chr3_3:73785513-73785532 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAATATTGAAGT+AGG | + | chr3_3:73785637-73785656 | None:intergenic | 15.0% |
| !! | ATTTATTGTTTGGAAAATTA+AGG | - | chr3_3:73785683-73785702 | Msa0471460:intron | 15.0% |
| !!! | ATTAAATTTGTCTAAAGTAT+TGG | + | chr3_3:73785734-73785753 | None:intergenic | 15.0% |
| !!! | TGAAATGCTATTTTTTAAAA+AGG | + | chr3_3:73785778-73785797 | None:intergenic | 15.0% |
| !! | ATTATATGTTTCTTATATGT+CGG | + | chr3_3:73786214-73786233 | None:intergenic | 15.0% |
| !!! | TTCCATTTTTCAACTTTTAA+CGG | + | chr3_3:73782712-73782731 | None:intergenic | 20.0% |
| !! | AAACTCATACATATTATATG+CGG | - | chr3_3:73782974-73782993 | Msa0471460:intron | 20.0% |
| !!! | ATAGTTAATTTTGGAATGAT+TGG | - | chr3_3:73783239-73783258 | Msa0471460:intron | 20.0% |
| !! | AAAATAAAAAAGGGTGAATT+GGG | + | chr3_3:73783432-73783451 | None:intergenic | 20.0% |
| !! | TTGTAAAACTATGAACAAAA+AGG | + | chr3_3:73783455-73783474 | None:intergenic | 20.0% |
| !!! | GTTTTACAAGATGATTTTTT+TGG | - | chr3_3:73783466-73783485 | Msa0471460:intron | 20.0% |
| !!! | TGTCATAAACTTTTTTTTTG+TGG | - | chr3_3:73783795-73783814 | Msa0471460:intron | 20.0% |
| !! | TGTATAAGGGAAATAAATTA+TGG | + | chr3_3:73783930-73783949 | None:intergenic | 20.0% |
| !! | AAAAAACTGAGTATGTATAA+GGG | + | chr3_3:73783943-73783962 | None:intergenic | 20.0% |
| !! | AAAAAAACTGAGTATGTATA+AGG | + | chr3_3:73783944-73783963 | None:intergenic | 20.0% |
| !!! | TTGGTTTCTTTAATTTGTTA+TGG | - | chr3_3:73783981-73784000 | Msa0471460:intron | 20.0% |
| !!! | TTTCTTTAATTTGTTATGGT+TGG | - | chr3_3:73783985-73784004 | Msa0471460:intron | 20.0% |
| !!! | TTCTTTAATTTGTTATGGTT+GGG | - | chr3_3:73783986-73784005 | Msa0471460:intron | 20.0% |
| !!! | CTTTTTTGCAATATTTTTTG+TGG | - | chr3_3:73784229-73784248 | Msa0471460:intron | 20.0% |
| !!! | TGACTACAAATTTTATTTTC+CGG | + | chr3_3:73784728-73784747 | None:intergenic | 20.0% |
| !! | AGACTAGTATAAAATAATGA+AGG | - | chr3_3:73785160-73785179 | Msa0471460:intron | 20.0% |
| !! | ATAGGTTCATATTTATTGTT+TGG | - | chr3_3:73785673-73785692 | Msa0471460:intron | 20.0% |
| !!! | ATTTTTCTTCCTATAAACAT+TGG | - | chr3_3:73785752-73785771 | Msa0471460:intron | 20.0% |
| ! | TTCTAATCGAAAAGAGATTT+GGG | + | chr3_3:73782563-73782582 | None:intergenic | 25.0% |
| ! | AAAAAAAAGATGAAACCTCT+TGG | + | chr3_3:73782921-73782940 | None:intergenic | 25.0% |
| ! | GAAAATAAAAAAGGGTGAAT+TGG | + | chr3_3:73783433-73783452 | None:intergenic | 25.0% |
| !! | TCAGCAATTAAATCGTATTT+TGG | + | chr3_3:73783535-73783554 | None:intergenic | 25.0% |
| !! | TTTGAGATTTAAGTGACTAA+CGG | + | chr3_3:73783567-73783586 | None:intergenic | 25.0% |
| !!! | CATAAACTTTTTTTTTGTGG+TGG | - | chr3_3:73783798-73783817 | Msa0471460:intron | 25.0% |
| ! | GATTGAGCTGAAAAAAAAAA+TGG | + | chr3_3:73784166-73784185 | None:intergenic | 25.0% |
| !! | ATTGATGCTGATAATTTTCA+AGG | + | chr3_3:73784480-73784499 | None:intergenic | 25.0% |
| ! | TGGAAGCTTAAGAAAAATAT+GGG | + | chr3_3:73784557-73784576 | None:intergenic | 25.0% |
| ! | TTGGAAGCTTAAGAAAAATA+TGG | + | chr3_3:73784558-73784577 | None:intergenic | 25.0% |
| !! | AATACTTGATAAACGTTTTC+CGG | - | chr3_3:73784849-73784868 | Msa0471460:intron | 25.0% |
| !!! | TTTTATACTAGTCTCTGTAT+TGG | + | chr3_3:73785154-73785173 | None:intergenic | 25.0% |
| ! | AAGCAAAAATATGTCATGAA+AGG | + | chr3_3:73785263-73785282 | None:intergenic | 25.0% |
| ! | AACAAGCTATACATTCATTT+CGG | + | chr3_3:73785308-73785327 | None:intergenic | 25.0% |
| !!! | AAATGAATGTATAGCTTGTT+CGG | - | chr3_3:73785308-73785327 | Msa0471460:intron | 25.0% |
| ! | TTGAAGGGAAATTTCTTATT+AGG | - | chr3_3:73785429-73785448 | Msa0471460:CDS | 25.0% |
| ! | TTAAAAAGGCCAATGTTTAT+AGG | + | chr3_3:73785764-73785783 | None:intergenic | 25.0% |
| !! | TAGAAACTTCTAAAAGGAAT+TGG | - | chr3_3:73785854-73785873 | Msa0471460:intron | 25.0% |
| ! | AAATATTTACTGGAAAAGCA+AGG | + | chr3_3:73785953-73785972 | None:intergenic | 25.0% |
| ! | TTTCCAGTAAATATTTACAC+AGG | - | chr3_3:73785957-73785976 | Msa0471460:CDS | 25.0% |
| ! | ATTCCTGTGTAAATATTTAC+TGG | + | chr3_3:73785963-73785982 | None:intergenic | 25.0% |
| !!! | CATTTGGATTTTGATATCTT+TGG | - | chr3_3:73786076-73786095 | Msa0471460:CDS | 25.0% |
| CTTCTAATCGAAAAGAGATT+TGG | + | chr3_3:73782564-73782583 | None:intergenic | 30.0% | |
| !! | TTATGATGCTCTGAAATTGA+AGG | + | chr3_3:73783290-73783309 | None:intergenic | 30.0% |
| !! | TTCAGAGCATCATAAAGTTT+TGG | - | chr3_3:73783295-73783314 | Msa0471460:intron | 30.0% |
| ! | TCCAAATATTCACGTTTTTG+TGG | - | chr3_3:73783341-73783360 | Msa0471460:intron | 30.0% |
| TCCACAAAAACGTGAATATT+TGG | + | chr3_3:73783345-73783364 | None:intergenic | 30.0% | |
| !!! | ATCGTATTTTGGTTTGAGTT+AGG | + | chr3_3:73783524-73783543 | None:intergenic | 30.0% |
| TTAGTGACTAAAGTGATTGA+TGG | + | chr3_3:73783699-73783718 | None:intergenic | 30.0% | |
| CTAAAGTGATTGAACATCTT+TGG | + | chr3_3:73783728-73783747 | None:intergenic | 30.0% | |
| !! | CTATACTGACTTAACATCTT+TGG | + | chr3_3:73783764-73783783 | None:intergenic | 30.0% |
| GACAATGCATTATATATGCA+AGG | + | chr3_3:73783843-73783862 | None:intergenic | 30.0% | |
| ATGAACTAATTCAACTGAGA+AGG | - | chr3_3:73783902-73783921 | Msa0471460:intron | 30.0% | |
| TCATGTCTTCTCTATCAAAT+TGG | - | chr3_3:73784019-73784038 | Msa0471460:intron | 30.0% | |
| ! | GTCCTATTAGTATTTTGCAA+CGG | + | chr3_3:73784412-73784431 | None:intergenic | 30.0% |
| GATAGATCCATAGAAAGAAA+GGG | + | chr3_3:73784443-73784462 | None:intergenic | 30.0% | |
| TAAGAAAAATATGGGGGTAA+AGG | + | chr3_3:73784549-73784568 | None:intergenic | 30.0% | |
| GAAGCTTAAGAAAAATATGG+GGG | + | chr3_3:73784555-73784574 | None:intergenic | 30.0% | |
| GGAAGCTTAAGAAAAATATG+GGG | + | chr3_3:73784556-73784575 | None:intergenic | 30.0% | |
| GCAAGTTTGAGAATATAAAC+CGG | - | chr3_3:73784666-73784685 | Msa0471460:intron | 30.0% | |
| TATAAACCGGAAAACTTTCA+TGG | - | chr3_3:73784679-73784698 | Msa0471460:intron | 30.0% | |
| ! | AAAACTCCATGAAAGTTTTC+CGG | + | chr3_3:73784688-73784707 | None:intergenic | 30.0% |
| ! | AAAACTTTCATGGAGTTTTC+TGG | - | chr3_3:73784689-73784708 | Msa0471460:intron | 30.0% |
| !! | TTCTGGTTTACATATGATTC+CGG | - | chr3_3:73784706-73784725 | Msa0471460:intron | 30.0% |
| !! | AGTTTTCAAGAAAGGTTTTC+TGG | - | chr3_3:73784826-73784845 | Msa0471460:intron | 30.0% |
| TTACTCTTCATCATTATGTG+TGG | - | chr3_3:73784975-73784994 | Msa0471460:intron | 30.0% | |
| !!! | AGAAAGCGTATCTCTTTTTT+CGG | + | chr3_3:73785026-73785045 | None:intergenic | 30.0% |
| TCACATAATTATTTGCAGTG+TGG | - | chr3_3:73785351-73785370 | Msa0471460:intron | 30.0% | |
| TTTACGTTTGAAGAAGTTGA+AGG | - | chr3_3:73785413-73785432 | Msa0471460:CDS | 30.0% | |
| TTACGTTTGAAGAAGTTGAA+GGG | - | chr3_3:73785414-73785433 | Msa0471460:CDS | 30.0% | |
| ATTAAGGTAGAGCAAGAAAA+CGG | - | chr3_3:73785699-73785718 | Msa0471460:intron | 30.0% | |
| !! | GTCTAAAGTATTGGTTCAAT+TGG | + | chr3_3:73785725-73785744 | None:intergenic | 30.0% |
| AAGCCTCAAATTAATCACTT+CGG | + | chr3_3:73785825-73785844 | None:intergenic | 30.0% | |
| TCTCTGTAGAAACTTCTAAA+AGG | - | chr3_3:73785848-73785867 | Msa0471460:intron | 30.0% | |
| AAAAGGAATTGGCCAAATAT+TGG | - | chr3_3:73785865-73785884 | Msa0471460:intron | 30.0% | |
| ATTCCCATGCTTCAAAAAAT+GGG | - | chr3_3:73786041-73786060 | Msa0471460:CDS | 30.0% | |
| !! | TGGATTTTGATATCTTTGGA+CGG | - | chr3_3:73786080-73786099 | Msa0471460:CDS | 30.0% |
| TCAATTTCCAAATGCAACCA+TGG | - | chr3_3:73782522-73782541 | Msa0471460:three_prime_UTR | 35.0% | |
| ! | TCGAAAAGAGATTTGGGATT+GGG | + | chr3_3:73782557-73782576 | None:intergenic | 35.0% |
| ! | ATCGAAAAGAGATTTGGGAT+TGG | + | chr3_3:73782558-73782577 | None:intergenic | 35.0% |
| GGCCGTTAAAAGTTGAAAAA+TGG | - | chr3_3:73782707-73782726 | Msa0471460:CDS | 35.0% | |
| ATGCGGAGAAAAATATTGCA+AGG | - | chr3_3:73782991-73783010 | Msa0471460:intron | 35.0% | |
| ACTTCGATGGTAAAAAGTTG+CGG | + | chr3_3:73783039-73783058 | None:intergenic | 35.0% | |
| ! | ACTTTTTACCATCGAAGTTG+AGG | - | chr3_3:73783041-73783060 | Msa0471460:intron | 35.0% |
| ! | GTGACAACTAGTCATACTTT+TGG | + | chr3_3:73783626-73783645 | None:intergenic | 35.0% |
| TGCATTATATATGCAAGGTC+CGG | + | chr3_3:73783838-73783857 | None:intergenic | 35.0% | |
| AGAGAAGACATGATTTCTTC+TGG | + | chr3_3:73784012-73784031 | None:intergenic | 35.0% | |
| TGAACATAGAGCACATATGA+GGG | + | chr3_3:73784079-73784098 | None:intergenic | 35.0% | |
| TTGAACATAGAGCACATATG+AGG | + | chr3_3:73784080-73784099 | None:intergenic | 35.0% | |
| TTGATGTGCGCCTATATAAT+TGG | + | chr3_3:73784199-73784218 | None:intergenic | 35.0% | |
| TTTGTGCCCTTAAGCAATTT+AGG | - | chr3_3:73784382-73784401 | Msa0471460:intron | 35.0% | |
| ! | CTATTAGTATTTTGCAACGG+TGG | + | chr3_3:73784409-73784428 | None:intergenic | 35.0% |
| CACCGTTGCAAAATACTAAT+AGG | - | chr3_3:73784407-73784426 | Msa0471460:intron | 35.0% | |
| GGATAGATCCATAGAAAGAA+AGG | + | chr3_3:73784444-73784463 | None:intergenic | 35.0% | |
| ! | AGGTACAAATATAGGAGTGT+GGG | + | chr3_3:73784529-73784548 | None:intergenic | 35.0% |
| AAGGTACAAATATAGGAGTG+TGG | + | chr3_3:73784530-73784549 | None:intergenic | 35.0% | |
| GGTAAACTTCAAAAAAGCGA+GGG | + | chr3_3:73784632-73784651 | None:intergenic | 35.0% | |
| ! | GTTTTCCGGTGTATGTTATA+TGG | - | chr3_3:73784863-73784882 | Msa0471460:intron | 35.0% |
| TTCGTCCATATAACATACAC+CGG | + | chr3_3:73784871-73784890 | None:intergenic | 35.0% | |
| TCTTCATCATTATGTGTGGT+TGG | - | chr3_3:73784979-73784998 | Msa0471460:intron | 35.0% | |
| ! | CGGCAATTGTATTTTCCTTT+TGG | + | chr3_3:73785006-73785025 | None:intergenic | 35.0% |
| GTAACAGACTAATTTGAGAG+TGG | - | chr3_3:73785184-73785203 | Msa0471460:intron | 35.0% | |
| AATCTGCATCCATTTGTGAA+GGG | + | chr3_3:73785392-73785411 | None:intergenic | 35.0% | |
| AAATCTGCATCCATTTGTGA+AGG | + | chr3_3:73785393-73785412 | None:intergenic | 35.0% | |
| TTAAAAAATCGTGCGCTCAA+TGG | - | chr3_3:73785481-73785500 | Msa0471460:intron | 35.0% | |
| TTGCAGCAAAATAACATGCA+TGG | - | chr3_3:73785565-73785584 | Msa0471460:intron | 35.0% | |
| GAAGTAGGAAAGAAAATACC+AGG | + | chr3_3:73785622-73785641 | None:intergenic | 35.0% | |
| CAAATTAATCACTTCGGAGT+TGG | + | chr3_3:73785819-73785838 | None:intergenic | 35.0% | |
| ! | ACTCCGAAGTGATTAATTTG+AGG | - | chr3_3:73785819-73785838 | Msa0471460:intron | 35.0% |
| GTGGATAGCTATCCAATATT+TGG | + | chr3_3:73785880-73785899 | None:intergenic | 35.0% | |
| GATTCCCATGCTTCAAAAAA+TGG | - | chr3_3:73786040-73786059 | Msa0471460:CDS | 35.0% | |
| TTCCCATGCTTCAAAAAATG+GGG | - | chr3_3:73786042-73786061 | Msa0471460:CDS | 35.0% | |
| AATGATGCCATGGTTGCATT+TGG | + | chr3_3:73782532-73782551 | None:intergenic | 40.0% | |
| ! | CGAAAAGAGATTTGGGATTG+GGG | + | chr3_3:73782556-73782575 | None:intergenic | 40.0% |
| !! | ACTATTGGTGGTGTTCTTGT+TGG | + | chr3_3:73782599-73782618 | None:intergenic | 40.0% |
| AATGCATGGTCGTGTACTAT+TGG | + | chr3_3:73782614-73782633 | None:intergenic | 40.0% | |
| TTGCATAAACGAGCAATGCA+TGG | + | chr3_3:73782628-73782647 | None:intergenic | 40.0% | |
| ! | TGGTTTGGCAACAAGATTGA+TGG | + | chr3_3:73782665-73782684 | None:intergenic | 40.0% |
| ! | TTTAGGTTTGGTAGCAACGT+TGG | + | chr3_3:73782685-73782704 | None:intergenic | 40.0% |
| ! | TTTAACGGCCTCTTTAGGTT+TGG | + | chr3_3:73782697-73782716 | None:intergenic | 40.0% |
| ! | CAACTTTTAACGGCCTCTTT+AGG | + | chr3_3:73782702-73782721 | None:intergenic | 40.0% |
| ! | GGACTTTCTGGTAGAAATTC+AGG | + | chr3_3:73782772-73782791 | None:intergenic | 40.0% |
| TGAAAGCCTCGTAGAATTCA+TGG | + | chr3_3:73782813-73782832 | None:intergenic | 40.0% | |
| AAAGTTGCGGGAACATAGAT+AGG | + | chr3_3:73783026-73783045 | None:intergenic | 40.0% | |
| CTTCGATGGTAAAAAGTTGC+GGG | + | chr3_3:73783038-73783057 | None:intergenic | 40.0% | |
| TTTACCATCGAAGTTGAGGA+TGG | - | chr3_3:73783045-73783064 | Msa0471460:intron | 40.0% | |
| !! | AAAGTTTTGGCAAAGCGTGA+TGG | - | chr3_3:73783308-73783327 | Msa0471460:intron | 40.0% |
| ! | CGTTTTTGTGGAAGATACCA+AGG | - | chr3_3:73783353-73783372 | Msa0471460:CDS | 40.0% |
| ! | CATAACATGGTTGCTTTCCT+TGG | + | chr3_3:73783373-73783392 | None:intergenic | 40.0% |
| CAAGGAAAGCAACCATGTTA+TGG | - | chr3_3:73783371-73783390 | Msa0471460:CDS | 40.0% | |
| TAAACGCAGTGACCATAACA+TGG | + | chr3_3:73783386-73783405 | None:intergenic | 40.0% | |
| ! | ATCGTGCTTTCGTTTGAGTT+AGG | + | chr3_3:73783655-73783674 | None:intergenic | 40.0% |
| CATTATATATGCAAGGTCCG+GGG | + | chr3_3:73783836-73783855 | None:intergenic | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr3_3:73783837-73783856 | None:intergenic | 40.0% | |
| TGAGCTTAGCTCAACTGATA+AGG | + | chr3_3:73783865-73783884 | None:intergenic | 40.0% | |
| GGTGGTCCTAAATTGCTTAA+GGG | + | chr3_3:73784391-73784410 | None:intergenic | 40.0% | |
| GGATCTATCCAATCTCACAA+CGG | - | chr3_3:73784454-73784473 | Msa0471460:intron | 40.0% | |
| ! | GGTACAAATATAGGAGTGTG+GGG | + | chr3_3:73784528-73784547 | None:intergenic | 40.0% |
| ! | GGGGGTAAAGGTACAAATAT+AGG | + | chr3_3:73784537-73784556 | None:intergenic | 40.0% |
| CGGTAAACTTCAAAAAAGCG+AGG | + | chr3_3:73784633-73784652 | None:intergenic | 40.0% | |
| ! | AACTTGCTTTCTTAGCGTCT+CGG | + | chr3_3:73784653-73784672 | None:intergenic | 40.0% |
| !! | TCCTAGAATACTGACTTGCA+CGG | + | chr3_3:73784795-73784814 | None:intergenic | 40.0% |
| TTATGTGTGGTTGGACCAAA+AGG | - | chr3_3:73784988-73785007 | Msa0471460:intron | 40.0% | |
| TTCACTAGAACACTATCGCT+TGG | - | chr3_3:73785064-73785083 | Msa0471460:intron | 40.0% | |
| AAGAAGCTACCCTTCACAAA+TGG | - | chr3_3:73785380-73785399 | Msa0471460:intron | 40.0% | |
| CAGCAAAATAACATGCATGG+AGG | - | chr3_3:73785568-73785587 | Msa0471460:intron | 40.0% | |
| GAGGAATTTCCACTAAAACC+TGG | - | chr3_3:73785587-73785606 | Msa0471460:intron | 40.0% | |
| !! | ACTAGTTCACCAGGTTTTAG+TGG | + | chr3_3:73785599-73785618 | None:intergenic | 40.0% |
| TCCCATGCTTCAAAAAATGG+GGG | - | chr3_3:73786043-73786062 | Msa0471460:CDS | 40.0% | |
| !!! | TCCCCCATTTTTTGAAGCAT+GGG | + | chr3_3:73786047-73786066 | None:intergenic | 40.0% |
| !!! | TTCCCCCATTTTTTGAAGCA+TGG | + | chr3_3:73786048-73786067 | None:intergenic | 40.0% |
| TACCATTGCTTGAAGCTGTA+GGG | + | chr3_3:73786130-73786149 | None:intergenic | 40.0% | |
| ! | GTTTGGTAGCAACGTTGGTT+TGG | + | chr3_3:73782680-73782699 | None:intergenic | 45.0% |
| CGTTGCTACCAAACCTAAAG+AGG | - | chr3_3:73782686-73782705 | Msa0471460:exon | 45.0% | |
| AATTCATGGACAAGGTGCAC+TGG | + | chr3_3:73782799-73782818 | None:intergenic | 45.0% | |
| CCTCGTAGAATTCATGGACA+AGG | + | chr3_3:73782807-73782826 | None:intergenic | 45.0% | |
| CCTTGTCCATGAATTCTACG+AGG | - | chr3_3:73782804-73782823 | Msa0471460:intron | 45.0% | |
| TTCTCCTAACTGTGTCTACC+AGG | - | chr3_3:73782867-73782886 | Msa0471460:intron | 45.0% | |
| CTTCATACGCAGTGTAGAAG+AGG | + | chr3_3:73782897-73782916 | None:intergenic | 45.0% | |
| CTCTTCTACACTGCGTATGA+AGG | - | chr3_3:73782895-73782914 | Msa0471460:CDS | 45.0% | |
| TTGCGGGAACATAGATAGGT+TGG | + | chr3_3:73783022-73783041 | None:intergenic | 45.0% | |
| GAAACCATCCTCAACTTCGA+TGG | + | chr3_3:73783052-73783071 | None:intergenic | 45.0% | |
| !! | CAAAGCGTGATGGATGCAAT+GGG | - | chr3_3:73783318-73783337 | Msa0471460:intron | 45.0% |
| GTCACTGCGTTTATGCACTT+AGG | - | chr3_3:73783393-73783412 | Msa0471460:CDS | 45.0% | |
| AAGGTCCGGGGTTTAAATCT+CGG | + | chr3_3:73783824-73783843 | None:intergenic | 45.0% | |
| ACATAGAGCACATATGAGGG+AGG | + | chr3_3:73784076-73784095 | None:intergenic | 45.0% | |
| CGGTGGTCCTAAATTGCTTA+AGG | + | chr3_3:73784392-73784411 | None:intergenic | 45.0% | |
| CGACTCTCCCTTTCTTTCTA+TGG | - | chr3_3:73784433-73784452 | Msa0471460:intron | 45.0% | |
| TTTCAAGGCCGTTGTGAGAT+TGG | + | chr3_3:73784465-73784484 | None:intergenic | 45.0% | |
| TCCGTGCAAGTCAGTATTCT+AGG | - | chr3_3:73784791-73784810 | Msa0471460:intron | 45.0% | |
| AAAACCTGGTGAACTAGTCC+TGG | - | chr3_3:73785601-73785620 | Msa0471460:intron | 45.0% | |
| !! | AATACCAGGACTAGTTCACC+AGG | + | chr3_3:73785608-73785627 | None:intergenic | 45.0% |
| TGGGGGAAATGACATGCATT+TGG | - | chr3_3:73786060-73786079 | Msa0471460:CDS | 45.0% | |
| TTCCCTACAGCTTCAAGCAA+TGG | - | chr3_3:73786125-73786144 | Msa0471460:CDS | 45.0% | |
| CTACCATTGCTTGAAGCTGT+AGG | + | chr3_3:73786131-73786150 | None:intergenic | 45.0% | |
| !!! | AAAATTAATTTGTTTATAAT+TGG | + | chr3_3:73783120-73783139 | None:intergenic | 5.0% |
| !!! | TTTAAAATTAATTTTTTTAG+AGG | + | chr3_3:73783148-73783167 | None:intergenic | 5.0% |
| !! | TTTATTTACTATTATAAAAT+AGG | - | chr3_3:73785655-73785674 | Msa0471460:intron | 5.0% |
| GCATGGTCGTGTACTATTGG+TGG | + | chr3_3:73782611-73782630 | None:intergenic | 50.0% | |
| ! | TGCACTGGTGAAGGACTTTC+TGG | + | chr3_3:73782784-73782803 | None:intergenic | 50.0% |
| AGGTCCTGGTAGACACAGTT+AGG | + | chr3_3:73782874-73782893 | None:intergenic | 50.0% | |
| CATACGCAGTGTAGAAGAGG+AGG | + | chr3_3:73782894-73782913 | None:intergenic | 50.0% | |
| !! | GCAAAGCGTGATGGATGCAA+TGG | - | chr3_3:73783317-73783336 | Msa0471460:intron | 50.0% |
| TCAGTTGAGCTAAGCTCACG+AGG | - | chr3_3:73783867-73783886 | Msa0471460:intron | 50.0% | |
| CATTTACCTGCTGCTGCTAG+TGG | + | chr3_3:73785899-73785918 | None:intergenic | 50.0% | |
| GGATTGGGGCAATGATGCCA+TGG | + | chr3_3:73782542-73782561 | None:intergenic | 55.0% | |
| AAAGTGCGTAGCAGCGACGA+TGG | - | chr3_3:73782730-73782749 | Msa0471460:CDS | 55.0% | |
| ! | TGGACAAGGTGCACTGGTGA+AGG | + | chr3_3:73782793-73782812 | None:intergenic | 55.0% |
| CAGTGTAGAAGAGGAGGTCC+TGG | + | chr3_3:73782888-73782907 | None:intergenic | 55.0% | |
| CACTGCGTATGAAGGCCAAG+AGG | - | chr3_3:73782903-73782922 | Msa0471460:CDS | 55.0% | |
| GGTGGCCGAGATTTAAACCC+CGG | - | chr3_3:73783816-73783835 | Msa0471460:intron | 55.0% | |
| AGCTATCCACTAGCAGCAGC+AGG | - | chr3_3:73785890-73785909 | Msa0471460:CDS | 55.0% | |
| CGTAGCAGCGACGATGGATC+AGG | - | chr3_3:73782736-73782755 | Msa0471460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 73782505 | 73786294 | 73782505 | ID=Msa0471460;Name=Msa0471460 |
| chr3_3 | mRNA | 73782505 | 73786294 | 73782505 | ID=Msa0471460-mRNA-1;Parent=Msa0471460;Name=Msa0471460-mRNA-1;_AED=0.20;_eAED=0.20;_QI=36|1|1|1|1|1|6|183|255 |
| chr3_3 | exon | 73782505 | 73782767 | 73782505 | ID=Msa0471460-mRNA-1:exon:18744;Parent=Msa0471460-mRNA-1 |
| chr3_3 | exon | 73782888 | 73782942 | 73782888 | ID=Msa0471460-mRNA-1:exon:18743;Parent=Msa0471460-mRNA-1 |
| chr3_3 | exon | 73783177 | 73783228 | 73783177 | ID=Msa0471460-mRNA-1:exon:18742;Parent=Msa0471460-mRNA-1 |
| chr3_3 | exon | 73783349 | 73783430 | 73783349 | ID=Msa0471460-mRNA-1:exon:18741;Parent=Msa0471460-mRNA-1 |
| chr3_3 | exon | 73785385 | 73785499 | 73785385 | ID=Msa0471460-mRNA-1:exon:18740;Parent=Msa0471460-mRNA-1 |
| chr3_3 | exon | 73785875 | 73786294 | 73785875 | ID=Msa0471460-mRNA-1:exon:18739;Parent=Msa0471460-mRNA-1 |
| chr3_3 | five_prime_UTR | 73786259 | 73786294 | 73786259 | ID=Msa0471460-mRNA-1:five_prime_utr;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73785875 | 73786258 | 73785875 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73785385 | 73785499 | 73785385 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73783349 | 73783430 | 73783349 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73783177 | 73783228 | 73783177 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73782888 | 73782942 | 73782888 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | CDS | 73782688 | 73782767 | 73782688 | ID=Msa0471460-mRNA-1:cds;Parent=Msa0471460-mRNA-1 |
| chr3_3 | three_prime_UTR | 73782505 | 73782687 | 73782505 | ID=Msa0471460-mRNA-1:three_prime_utr;Parent=Msa0471460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
