AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043290 MtrunA17_Chr1g0209261 98.544 206 3 0 1 206 1 206 5.99e-152 419
Msa0043290 MtrunA17_Chr8g0376101 46.429 196 101 1 13 204 26 221 9.39e-64 196
Msa0043290 MtrunA17_Chr8g0387631 39.303 201 116 2 10 204 58 258 1.28e-49 162
Msa0043290 MtrunA17_Chr1g0202401 40.415 193 109 2 10 196 51 243 2.57e-44 148
Msa0043290 MtrunA17_Chr8g0348131 37.745 204 117 3 10 203 62 265 3.95e-44 148
Msa0043290 MtrunA17_Chr3g0095441 36.022 186 113 2 10 189 43 228 1.62e-36 127
Msa0043290 MtrunA17_Chr5g0442361 35.678 199 116 4 10 198 42 238 8.23e-36 125
Msa0043290 MtrunA17_Chr3g0108661 34.132 167 106 1 14 176 53 219 5.03e-27 103
Msa0043290 MtrunA17_Chr4g0005701 30.102 196 133 1 13 204 12 207 9.46e-22 88.6
Msa0043290 MtrunA17_Chr1g0208091 29.231 195 134 1 14 204 8 202 1.85e-19 82.4
Msa0043290 MtrunA17_Chr6g0453331 29.189 185 127 1 24 204 13 197 1.72e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043290 AT3G18260.1 45.178 197 104 1 13 205 28 224 7.51e-60 187
Msa0043290 AT1G68230.2 45.312 192 103 1 15 204 22 213 2.42e-57 180
Msa0043290 AT4G11220.1 39.801 201 115 2 10 204 69 269 2.69e-52 169
Msa0043290 AT4G23630.1 39.303 201 116 2 10 204 73 273 9.05e-52 168
Msa0043290 AT4G23630.2 39.303 201 116 2 10 204 73 273 9.05e-52 168
Msa0043290 AT2G46170.1 38.000 200 118 2 10 203 52 251 2.93e-47 156
Msa0043290 AT5G41600.1 38.537 205 116 3 10 204 52 256 6.44e-46 152
Msa0043290 AT3G61560.1 36.000 200 122 2 10 203 52 251 6.57e-42 142
Msa0043290 AT3G61560.2 36.000 200 122 2 10 203 52 251 6.57e-42 142
Msa0043290 AT1G64090.1 35.176 199 119 3 10 198 48 246 9.98e-42 142
Msa0043290 AT1G64090.2 32.407 216 120 4 10 199 48 263 7.59e-38 132
Msa0043290 AT3G10260.1 32.143 196 129 1 13 204 50 245 1.75e-35 125
Msa0043290 AT3G10260.2 32.143 196 129 1 13 204 50 245 1.75e-35 125
Msa0043290 AT1G68230.1 45.985 137 72 1 15 149 22 158 1.91e-35 123
Msa0043290 AT3G10260.3 32.143 196 129 1 13 204 70 265 2.78e-35 125
Msa0043290 AT4G01230.2 35.784 204 120 4 2 197 44 244 4.41e-35 124
Msa0043290 AT4G01230.1 34.804 204 120 5 2 197 44 242 5.85e-32 116
Msa0043290 AT3G61560.3 36.986 146 86 2 10 149 52 197 7.77e-28 104
Msa0043290 AT2G46170.2 37.008 127 74 2 10 130 52 178 7.43e-24 94.0
Msa0043290 AT3G10915.2 26.341 205 145 2 5 203 20 224 1.53e-23 94.0
Msa0043290 AT3G10915.7 26.500 200 141 2 10 203 50 249 1.59e-23 94.7
Msa0043290 AT3G19460.1 28.643 199 122 5 16 206 14 200 2.75e-23 92.8
Msa0043290 AT3G19460.5 28.643 199 122 5 16 206 14 200 2.75e-23 92.8
Msa0043290 AT3G19460.4 28.643 199 122 5 16 206 14 200 2.75e-23 92.8
Msa0043290 AT3G10915.4 26.214 206 145 3 5 203 20 225 5.52e-22 90.1
Msa0043290 AT2G15280.1 24.742 194 142 1 15 204 5 198 1.87e-20 85.5
Msa0043290 AT3G10915.3 24.590 183 134 1 25 203 9 191 2.04e-18 79.7
Msa0043290 AT3G10915.6 24.590 183 134 1 25 203 10 192 2.26e-18 79.7
Msa0043290 AT3G19460.3 25.862 232 120 6 16 206 14 234 1.24e-17 78.6
Msa0043290 AT3G19460.7 25.862 232 120 6 16 206 14 234 1.24e-17 78.6
Msa0043290 AT3G10915.5 23.684 228 145 4 5 203 20 247 4.76e-17 77.4
Msa0043290 AT3G54120.1 30.114 176 114 3 3 172 1 173 9.51e-17 75.5
Msa0043290 AT2G01240.1 28.889 135 94 2 69 202 1 134 3.20e-14 67.0
Msa0043290 AT3G19460.2 25.000 224 116 6 24 206 6 218 6.88e-14 68.2
Msa0043290 AT3G19460.6 25.000 224 116 6 24 206 6 218 6.88e-14 68.2

Find 64 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGCTCATTCTCTTTATT+TGG 0.147832 1_1:-74426241 Msa0043290:CDS
TCCAATCAACCTGGTTTATT+TGG 0.194638 1_1:-74427257 Msa0043290:CDS
GGTACATCACATATATTTAT+TGG 0.212629 1_1:-74427394 Msa0043290:five_prime_UTR
TGTTGATTTGATTAATTTCT+TGG 0.229748 1_1:-74427433 Msa0043290:five_prime_UTR
GAAGAGATTGTTCAACAAAT+TGG 0.245195 1_1:-74425379 Msa0043290:CDS
TCATACCGCTCATACATAAT+TGG 0.314636 1_1:+74425444 None:intergenic
CTATGGATCATGTCTACTAT+TGG 0.332384 1_1:-74425611 Msa0043290:CDS
GGAACGGATTGGCATGACTA+TGG 0.339408 1_1:+74427277 None:intergenic
ACCAAATAAACCAGGTTGAT+TGG 0.341184 1_1:+74427256 None:intergenic
ATGAATCTAACGGTAGAATC+TGG 0.349110 1_1:+74426053 None:intergenic
TTCAGACAATAGCTGGTCTA+TGG 0.360102 1_1:-74425628 Msa0043290:intron
ATTATTCATTTACATGCTTA+AGG 0.367372 1_1:+74425197 None:intergenic
TGGATTCTACAGTTCTCAAT+AGG 0.367654 1_1:-74425359 Msa0043290:CDS
ATCTGCTTGAAGCCAAATAA+TGG 0.371076 1_1:+74425230 None:intergenic
TAGGAATCATTAACTTGGTT+TGG 0.393341 1_1:-74427343 Msa0043290:five_prime_UTR
ATTTCAAAATCATAGATATC+AGG 0.404128 1_1:+74426077 None:intergenic
TTTATTTGGTATAATGCAGC+TGG 0.406398 1_1:-74426227 Msa0043290:CDS
GCATGAAACATAACAGTGTT+AGG 0.414970 1_1:-74427362 Msa0043290:five_prime_UTR
TGAACAATCTCTTCACGTCT+TGG 0.421418 1_1:+74425388 None:intergenic
AAATAAAGAGAATGAGCATA+AGG 0.427457 1_1:+74426243 None:intergenic
ATTGAATTTCAGACAATAGC+TGG 0.451267 1_1:-74425635 Msa0043290:intron
CTTGGTTTCAAAGTCTCCAT+TGG 0.486090 1_1:-74427415 Msa0043290:five_prime_UTR
AATAAAGAGAATGAGCATAA+GGG 0.486688 1_1:+74426244 None:intergenic
AGACCACTTCACGCAGTCCT+TGG 0.495322 1_1:-74427233 Msa0043290:CDS
CCAGGTTGATTGGAACGGAT+TGG 0.508121 1_1:+74427266 None:intergenic
CCACTTCACGCAGTCCTTGG+TGG 0.509588 1_1:-74427230 Msa0043290:CDS
GAAAACAACGGCAGCAATTG+TGG 0.515778 1_1:-74426345 Msa0043290:CDS
ATGCAGCTGGATTAATCACT+TGG 0.517496 1_1:-74426214 Msa0043290:intron
AAAAGTTCAACTTGTTCTTG+AGG 0.520276 1_1:-74426025 Msa0043290:CDS
CAGTTCTCAATAGGATTCCA+AGG 0.520634 1_1:-74425350 Msa0043290:CDS
TGAATCTAACGGTAGAATCT+GGG 0.523175 1_1:+74426054 None:intergenic
AGATCTTAGATTCTTCTTTG+TGG 0.523221 1_1:-74425976 Msa0043290:intron
ACAACGGCAGCAATTGTGGC+TGG 0.528525 1_1:-74426341 Msa0043290:CDS
TTGTATCGAGAGGTAAGGTA+TGG 0.539319 1_1:+74427460 None:intergenic
CCAATCCGTTCCAATCAACC+TGG 0.539807 1_1:-74427266 Msa0043290:CDS
TTCATTTACATGCTTAAGGT+AGG 0.543763 1_1:+74425201 None:intergenic
ACATAATTGGAAGTGTCACC+AGG 0.546032 1_1:+74425457 None:intergenic
GTGGACTATCTAGCAAGTAA+AGG 0.551485 1_1:-74425414 Msa0043290:CDS
CAATGTATCTTAATCATGTG+TGG 0.554111 1_1:-74427522 Msa0043290:five_prime_UTR
CTTAATCATGTGTGGGCACG+AGG 0.559547 1_1:-74427514 Msa0043290:five_prime_UTR
AGTGTTAGGAATCATTAACT+TGG 0.560560 1_1:-74427348 Msa0043290:five_prime_UTR
AAATATATGTGATGTACCAA+TGG 0.562809 1_1:+74427399 None:intergenic
CACACATGATTAAGATACAT+TGG 0.564018 1_1:+74427523 None:intergenic
CCACCAAGGACTGCGTGAAG+TGG 0.572676 1_1:+74427230 None:intergenic
ATAAACCAGGTTGATTGGAA+CGG 0.576581 1_1:+74427261 None:intergenic
CAGTTGCTGATATCTTGCTA+TGG 0.577932 1_1:-74426376 Msa0043290:CDS
GTTATGTTTCATGCGCATTG+AGG 0.578219 1_1:+74427371 None:intergenic
AATGTATCTTAATCATGTGT+GGG 0.578843 1_1:-74427521 Msa0043290:five_prime_UTR
CGGAGAAGATATAAAATCAT+CGG 0.580814 1_1:+74425304 None:intergenic
GGTTTGGTTTCTCTTTGAAG+TGG 0.581573 1_1:-74426309 Msa0043290:CDS
GAATGAGCATAAGGGCTATG+AGG 0.588672 1_1:+74426252 None:intergenic
AACATTTGTATCGAGAGGTA+AGG 0.594348 1_1:+74427455 None:intergenic
AGTTCTCAATAGGATTCCAA+GGG 0.601630 1_1:-74425349 Msa0043290:CDS
GCATAAGGGCTATGAGGACG+TGG 0.609815 1_1:+74426258 None:intergenic
GGTAAGGTATGGCTTTAGCA+TGG 0.612064 1_1:+74427471 None:intergenic
CACTTCCAATTATGTATGAG+CGG 0.613668 1_1:-74425449 Msa0043290:CDS
CTTCACGCAGTCCTTGGTGG+AGG 0.617691 1_1:-74427227 Msa0043290:CDS
TCAACAACATTTGTATCGAG+AGG 0.636340 1_1:+74427450 None:intergenic
GTATGAGCGGTATGAACATG+AGG 0.680175 1_1:-74425436 Msa0043290:CDS
TCTTACTCTTTCCTCCACCA+AGG 0.691240 1_1:+74427216 None:intergenic
AGTGGTCTACCAAATAAACC+AGG 0.692119 1_1:+74427248 None:intergenic
ATGGAAAGACATGAAAACAA+CGG 0.698215 1_1:-74426357 Msa0043290:CDS
TGAGCGGTATGAACATGAGG+TGG 0.701805 1_1:-74425433 Msa0043290:CDS
GTTCTCAATAGGATTCCAAG+GGG 0.759037 1_1:-74425348 Msa0043290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATAGTAAATATTTAAT+AGG - chr1_1:74425559-74425578 Msa0043290:intron 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_1:74425841-74425860 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_1:74425842-74425861 None:intergenic 10.0%
!! TACTAAAAATGAAAATTAAT+AGG + chr1_1:74425891-74425910 None:intergenic 10.0%
!!! ACATATTGATAATTTTTATA+AGG + chr1_1:74426514-74426533 None:intergenic 10.0%
!! AATAGTCAAAAAAATTTATA+GGG + chr1_1:74426857-74426876 None:intergenic 10.0%
!! AAATAGTCAAAAAAATTTAT+AGG + chr1_1:74426858-74426877 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_1:74426942-74426961 Msa0043290:intron 10.0%
!!! TTTGATAGTAAATATTTAAT+AGG - chr1_1:74425559-74425578 Msa0043290:intron 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_1:74425841-74425860 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_1:74425842-74425861 None:intergenic 10.0%
!! TACTAAAAATGAAAATTAAT+AGG + chr1_1:74425891-74425910 None:intergenic 10.0%
!!! ACATATTGATAATTTTTATA+AGG + chr1_1:74426514-74426533 None:intergenic 10.0%
!! AATAGTCAAAAAAATTTATA+GGG + chr1_1:74426857-74426876 None:intergenic 10.0%
!! AAATAGTCAAAAAAATTTAT+AGG + chr1_1:74426858-74426877 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_1:74426942-74426961 Msa0043290:intron 10.0%
!! ATAGTAAATATTTAATAGGT+TGG - chr1_1:74425563-74425582 Msa0043290:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+CGG - chr1_1:74425636-74425655 Msa0043290:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_1:74425747-74425766 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_1:74425748-74425767 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_1:74425840-74425859 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_1:74425981-74426000 Msa0043290:CDS 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_1:74426152-74426171 Msa0043290:intron 15.0%
!!! TTTTTTTTTTTTAGTACATG+CGG + chr1_1:74426259-74426278 None:intergenic 15.0%
!!! GTATCTTTTATAAAAATAGA+GGG - chr1_1:74426885-74426904 Msa0043290:intron 15.0%
!! AACAAATTAATTCAAATCAA+AGG + chr1_1:74427016-74427035 None:intergenic 15.0%
!! ATAGTAAATATTTAATAGGT+TGG - chr1_1:74425563-74425582 Msa0043290:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+CGG - chr1_1:74425636-74425655 Msa0043290:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_1:74425747-74425766 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_1:74425748-74425767 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_1:74425840-74425859 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_1:74425981-74426000 Msa0043290:CDS 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_1:74426152-74426171 Msa0043290:intron 15.0%
!!! TTTTTTTTTTTTAGTACATG+CGG + chr1_1:74426259-74426278 None:intergenic 15.0%
!!! GTATCTTTTATAAAAATAGA+GGG - chr1_1:74426885-74426904 Msa0043290:intron 15.0%
!! AACAAATTAATTCAAATCAA+AGG + chr1_1:74427016-74427035 None:intergenic 15.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_1:74425254-74425273 Msa0043290:three_prime_UTR 20.0%
!! AAATATATTTAGATTAAGGG+AGG + chr1_1:74425618-74425637 None:intergenic 20.0%
!! TTTATCAAAAAAATGTAAGC+GGG - chr1_1:74425637-74425656 Msa0043290:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_1:74425669-74425688 Msa0043290:intron 20.0%
!! CTAAAACAAGATTAAATGTA+TGG + chr1_1:74425817-74425836 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_1:74426157-74426176 Msa0043290:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_1:74426613-74426632 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_1:74426647-74426666 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_1:74426685-74426704 Msa0043290:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_1:74426686-74426705 Msa0043290:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_1:74426784-74426803 None:intergenic 20.0%
!!! CGTATCTTTTATAAAAATAG+AGG - chr1_1:74426884-74426903 Msa0043290:intron 20.0%
!! AAATAAGATAGCATGAATTA+TGG - chr1_1:74426970-74426989 Msa0043290:intron 20.0%
!! AATAAGATAGCATGAATTAT+GGG - chr1_1:74426971-74426990 Msa0043290:intron 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_1:74427493-74427512 None:intergenic 20.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_1:74425254-74425273 Msa0043290:three_prime_UTR 20.0%
!! AAATATATTTAGATTAAGGG+AGG + chr1_1:74425618-74425637 None:intergenic 20.0%
!! TTTATCAAAAAAATGTAAGC+GGG - chr1_1:74425637-74425656 Msa0043290:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_1:74425669-74425688 Msa0043290:intron 20.0%
!! CTAAAACAAGATTAAATGTA+TGG + chr1_1:74425817-74425836 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_1:74426157-74426176 Msa0043290:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_1:74426613-74426632 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_1:74426647-74426666 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_1:74426685-74426704 Msa0043290:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_1:74426686-74426705 Msa0043290:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_1:74426784-74426803 None:intergenic 20.0%
!!! CGTATCTTTTATAAAAATAG+AGG - chr1_1:74426884-74426903 Msa0043290:intron 20.0%
!! AAATAAGATAGCATGAATTA+TGG - chr1_1:74426970-74426989 Msa0043290:intron 20.0%
!! AATAAGATAGCATGAATTAT+GGG - chr1_1:74426971-74426990 Msa0043290:intron 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_1:74427493-74427512 None:intergenic 20.0%
! AAATATATGTGATGTACCAA+TGG + chr1_1:74425291-74425310 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_1:74425293-74425312 Msa0043290:three_prime_UTR 25.0%
!! GTAAATATTTAATAGGTTGG+TGG - chr1_1:74425566-74425585 Msa0043290:intron 25.0%
!!! ATTTTCATTTTTAGTAGTCG+TGG - chr1_1:74425895-74425914 Msa0043290:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_1:74425997-74426016 Msa0043290:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_1:74426446-74426465 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_1:74426447-74426466 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_1:74426446-74426465 Msa0043290:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_1:74426542-74426561 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_1:74426550-74426569 Msa0043290:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_1:74426555-74426574 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_1:74426854-74426873 None:intergenic 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_1:74426911-74426930 Msa0043290:intron 25.0%
! ATAAGATAGCATGAATTATG+GGG - chr1_1:74426972-74426991 Msa0043290:intron 25.0%
! AAATATATGTGATGTACCAA+TGG + chr1_1:74425291-74425310 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_1:74425293-74425312 Msa0043290:three_prime_UTR 25.0%
!! GTAAATATTTAATAGGTTGG+TGG - chr1_1:74425566-74425585 Msa0043290:intron 25.0%
!!! ATTTTCATTTTTAGTAGTCG+TGG - chr1_1:74425895-74425914 Msa0043290:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_1:74425997-74426016 Msa0043290:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_1:74426446-74426465 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_1:74426447-74426466 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_1:74426446-74426465 Msa0043290:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_1:74426542-74426561 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_1:74426550-74426569 Msa0043290:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_1:74426555-74426574 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_1:74426854-74426873 None:intergenic 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_1:74426911-74426930 Msa0043290:intron 25.0%
! ATAAGATAGCATGAATTATG+GGG - chr1_1:74426972-74426991 Msa0043290:intron 25.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_1:74425339-74425358 Msa0043290:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_1:74425344-74425363 Msa0043290:CDS 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_1:74425673-74425692 Msa0043290:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_1:74426023-74426042 Msa0043290:CDS 30.0%
ATTAAGAAGAGTTCACTCAA+AGG + chr1_1:74426090-74426109 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_1:74426138-74426157 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_1:74426286-74426305 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_1:74426330-74426349 Msa0043290:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_1:74426460-74426479 Msa0043290:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_1:74426543-74426562 None:intergenic 30.0%
!!! TTATTTTTGTGTTGCATTGC+AGG - chr1_1:74426581-74426600 Msa0043290:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_1:74426662-74426681 Msa0043290:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_1:74426711-74426730 Msa0043290:intron 30.0%
GAGGTGAGAATAATTGAAAA+TGG + chr1_1:74426751-74426770 None:intergenic 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_1:74427052-74427071 Msa0043290:intron 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_1:74427308-74427327 Msa0043290:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_1:74427386-74427405 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_1:74427406-74427425 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_1:74427489-74427508 None:intergenic 30.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_1:74425339-74425358 Msa0043290:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_1:74425344-74425363 Msa0043290:CDS 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_1:74425673-74425692 Msa0043290:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_1:74426023-74426042 Msa0043290:CDS 30.0%
ATTAAGAAGAGTTCACTCAA+AGG + chr1_1:74426090-74426109 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_1:74426138-74426157 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_1:74426286-74426305 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_1:74426330-74426349 Msa0043290:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_1:74426460-74426479 Msa0043290:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_1:74426543-74426562 None:intergenic 30.0%
!!! TTATTTTTGTGTTGCATTGC+AGG - chr1_1:74426581-74426600 Msa0043290:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_1:74426662-74426681 Msa0043290:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_1:74426711-74426730 Msa0043290:intron 30.0%
GAGGTGAGAATAATTGAAAA+TGG + chr1_1:74426751-74426770 None:intergenic 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_1:74427052-74427071 Msa0043290:intron 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_1:74427308-74427327 Msa0043290:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_1:74427386-74427405 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_1:74427406-74427425 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_1:74427489-74427508 None:intergenic 30.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_1:74425235-74425254 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_1:74425240-74425259 None:intergenic 35.0%
GCATGAAACATAACAGTGTT+AGG - chr1_1:74425325-74425344 Msa0043290:CDS 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_1:74425429-74425448 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_1:74425430-74425449 Msa0043290:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_1:74425434-74425453 None:intergenic 35.0%
! AGGGAGGTACATATTGTATA+AGG + chr1_1:74425602-74425621 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_1:74425871-74425890 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_1:74425872-74425891 None:intergenic 35.0%
GTCTCATGTTTGAATTCTCT+TGG - chr1_1:74426110-74426129 Msa0043290:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_1:74426125-74426144 Msa0043290:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_1:74426126-74426145 Msa0043290:intron 35.0%
!!! GCGGCTTTTTTTCTAAAACT+TGG + chr1_1:74426240-74426259 None:intergenic 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_1:74426357-74426376 Msa0043290:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_1:74426636-74426655 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_1:74426637-74426656 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_1:74426775-74426794 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_1:74426915-74426934 Msa0043290:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_1:74426921-74426940 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_1:74427076-74427095 Msa0043290:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_1:74427195-74427214 None:intergenic 35.0%
CACTTCCAATTATGTATGAG+CGG - chr1_1:74427238-74427257 Msa0043290:CDS 35.0%
TCATACCGCTCATACATAAT+TGG + chr1_1:74427246-74427265 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_1:74427328-74427347 Msa0043290:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_1:74427338-74427357 Msa0043290:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATTATT+TGG - chr1_1:74427445-74427464 Msa0043290:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATAA+TGG + chr1_1:74427460-74427479 None:intergenic 35.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_1:74425235-74425254 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_1:74425240-74425259 None:intergenic 35.0%
GCATGAAACATAACAGTGTT+AGG - chr1_1:74425325-74425344 Msa0043290:CDS 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_1:74425429-74425448 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_1:74425430-74425449 Msa0043290:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_1:74425434-74425453 None:intergenic 35.0%
! AGGGAGGTACATATTGTATA+AGG + chr1_1:74425602-74425621 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_1:74425871-74425890 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_1:74425872-74425891 None:intergenic 35.0%
GTCTCATGTTTGAATTCTCT+TGG - chr1_1:74426110-74426129 Msa0043290:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_1:74426125-74426144 Msa0043290:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_1:74426126-74426145 Msa0043290:intron 35.0%
!!! GCGGCTTTTTTTCTAAAACT+TGG + chr1_1:74426240-74426259 None:intergenic 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_1:74426357-74426376 Msa0043290:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_1:74426636-74426655 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_1:74426637-74426656 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_1:74426775-74426794 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_1:74426915-74426934 Msa0043290:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_1:74426921-74426940 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_1:74427076-74427095 Msa0043290:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_1:74427195-74427214 None:intergenic 35.0%
CACTTCCAATTATGTATGAG+CGG - chr1_1:74427238-74427257 Msa0043290:CDS 35.0%
TCATACCGCTCATACATAAT+TGG + chr1_1:74427246-74427265 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_1:74427328-74427347 Msa0043290:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_1:74427338-74427357 Msa0043290:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATTATT+TGG - chr1_1:74427445-74427464 Msa0043290:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATAA+TGG + chr1_1:74427460-74427479 None:intergenic 35.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_1:74425230-74425249 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_1:74425272-74425291 Msa0043290:three_prime_UTR 40.0%
GTTATGTTTCATGCGCATTG+AGG + chr1_1:74425319-74425338 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_1:74425442-74425461 None:intergenic 40.0%
GCATGAAAACGTGATACGAA+AGG + chr1_1:74425514-74425533 None:intergenic 40.0%
!! ATTTAAAGCGAGGGTTTTGG+TGG + chr1_1:74425724-74425743 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_1:74425867-74425886 None:intergenic 40.0%
CATCATTGTATCAACCCATG+TGG + chr1_1:74426053-74426072 None:intergenic 40.0%
CAATCCATTGTCAGCTTGTA+GGG + chr1_1:74426184-74426203 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_1:74426205-74426224 Msa0043290:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_1:74426211-74426230 Msa0043290:intron 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_1:74426311-74426330 Msa0043290:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_1:74426362-74426381 Msa0043290:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_1:74426378-74426397 Msa0043290:intron 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_1:74426473-74426492 Msa0043290:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_1:74427059-74427078 Msa0043290:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_1:74427212-74427231 Msa0043290:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_1:74427233-74427252 None:intergenic 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_1:74427273-74427292 Msa0043290:exon 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_1:74427302-74427321 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_1:74427337-74427356 Msa0043290:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_1:74427339-74427358 Msa0043290:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_1:74427366-74427385 None:intergenic 40.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_1:74425230-74425249 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_1:74425272-74425291 Msa0043290:three_prime_UTR 40.0%
GTTATGTTTCATGCGCATTG+AGG + chr1_1:74425319-74425338 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_1:74425442-74425461 None:intergenic 40.0%
GCATGAAAACGTGATACGAA+AGG + chr1_1:74425514-74425533 None:intergenic 40.0%
!! ATTTAAAGCGAGGGTTTTGG+TGG + chr1_1:74425724-74425743 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_1:74425867-74425886 None:intergenic 40.0%
CATCATTGTATCAACCCATG+TGG + chr1_1:74426053-74426072 None:intergenic 40.0%
CAATCCATTGTCAGCTTGTA+GGG + chr1_1:74426184-74426203 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_1:74426205-74426224 Msa0043290:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_1:74426211-74426230 Msa0043290:intron 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_1:74426311-74426330 Msa0043290:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_1:74426362-74426381 Msa0043290:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_1:74426378-74426397 Msa0043290:intron 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_1:74426473-74426492 Msa0043290:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_1:74427059-74427078 Msa0043290:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_1:74427212-74427231 Msa0043290:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_1:74427233-74427252 None:intergenic 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_1:74427273-74427292 Msa0043290:exon 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_1:74427302-74427321 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_1:74427337-74427356 Msa0043290:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_1:74427339-74427358 Msa0043290:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_1:74427366-74427385 None:intergenic 40.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_1:74425219-74425238 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_1:74425474-74425493 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_1:74425681-74425700 Msa0043290:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_1:74425727-74425746 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_1:74425733-74425752 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_1:74425734-74425753 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_1:74425854-74425873 Msa0043290:intron 45.0%
CCAATCCATTGTCAGCTTGT+AGG + chr1_1:74426185-74426204 None:intergenic 45.0%
CCTACAAGCTGACAATGGAT+TGG - chr1_1:74426182-74426201 Msa0043290:intron 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_1:74426190-74426209 Msa0043290:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_1:74426210-74426229 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_1:74426342-74426361 Msa0043290:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_1:74426438-74426457 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_1:74426770-74426789 None:intergenic 45.0%
GTATGAGCGGTATGAACATG+AGG - chr1_1:74427251-74427270 Msa0043290:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_1:74427357-74427376 None:intergenic 45.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_1:74425219-74425238 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_1:74425474-74425493 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_1:74425681-74425700 Msa0043290:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_1:74425727-74425746 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_1:74425733-74425752 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_1:74425734-74425753 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_1:74425854-74425873 Msa0043290:intron 45.0%
CCAATCCATTGTCAGCTTGT+AGG + chr1_1:74426185-74426204 None:intergenic 45.0%
CCTACAAGCTGACAATGGAT+TGG - chr1_1:74426182-74426201 Msa0043290:intron 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_1:74426190-74426209 Msa0043290:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_1:74426210-74426229 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_1:74426342-74426361 Msa0043290:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_1:74426438-74426457 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_1:74426770-74426789 None:intergenic 45.0%
GTATGAGCGGTATGAACATG+AGG - chr1_1:74427251-74427270 Msa0043290:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_1:74427357-74427376 None:intergenic 45.0%
!! TAAAAATATATTTAGATTAA+GGG + chr1_1:74425621-74425640 None:intergenic 5.0%
!! ATAAAAATATATTTAGATTA+AGG + chr1_1:74425622-74425641 None:intergenic 5.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_1:74425665-74425684 Msa0043290:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_1:74425666-74425685 Msa0043290:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_1:74427145-74427164 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_1:74427146-74427165 Msa0043290:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_1:74427172-74427191 None:intergenic 5.0%
!! TAAAAATATATTTAGATTAA+GGG + chr1_1:74425621-74425640 None:intergenic 5.0%
!! ATAAAAATATATTTAGATTA+AGG + chr1_1:74425622-74425641 None:intergenic 5.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_1:74425665-74425684 Msa0043290:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_1:74425666-74425685 Msa0043290:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_1:74427145-74427164 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_1:74427146-74427165 Msa0043290:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_1:74427172-74427191 None:intergenic 5.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_1:74425173-74425192 Msa0043290:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_1:74425413-74425432 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_1:74425424-74425443 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_1:74425421-74425440 Msa0043290:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_1:74425692-74425711 Msa0043290:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_1:74425693-74425712 Msa0043290:intron 50.0%
AGACGAGACGGAAATCCACA+TGG - chr1_1:74426035-74426054 Msa0043290:CDS 50.0%
GACGAGACGGAAATCCACAT+GGG - chr1_1:74426036-74426055 Msa0043290:CDS 50.0%
TGGACCCTACAAGCTGACAA+TGG - chr1_1:74426177-74426196 Msa0043290:intron 50.0%
TGAGCGGTATGAACATGAGG+TGG - chr1_1:74427254-74427273 Msa0043290:CDS 50.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_1:74425173-74425192 Msa0043290:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_1:74425413-74425432 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_1:74425424-74425443 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_1:74425421-74425440 Msa0043290:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_1:74425692-74425711 Msa0043290:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_1:74425693-74425712 Msa0043290:intron 50.0%
AGACGAGACGGAAATCCACA+TGG - chr1_1:74426035-74426054 Msa0043290:CDS 50.0%
GACGAGACGGAAATCCACAT+GGG - chr1_1:74426036-74426055 Msa0043290:CDS 50.0%
TGGACCCTACAAGCTGACAA+TGG - chr1_1:74426177-74426196 Msa0043290:intron 50.0%
TGAGCGGTATGAACATGAGG+TGG - chr1_1:74427254-74427273 Msa0043290:CDS 50.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_1:74425454-74425473 Msa0043290:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_1:74425685-74425704 Msa0043290:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_1:74425698-74425717 Msa0043290:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_1:74426346-74426365 Msa0043290:CDS 55.0%
GCATAAGGGCTATGAGGACG+TGG + chr1_1:74426432-74426451 None:intergenic 55.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_1:74425454-74425473 Msa0043290:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_1:74425685-74425704 Msa0043290:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_1:74425698-74425717 Msa0043290:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_1:74426346-74426365 Msa0043290:CDS 55.0%
GCATAAGGGCTATGAGGACG+TGG + chr1_1:74426432-74426451 None:intergenic 55.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_1:74425460-74425479 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_1:74425457-74425476 Msa0043290:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_1:74425460-74425479 Msa0043290:CDS 60.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_1:74425460-74425479 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_1:74425457-74425476 Msa0043290:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_1:74425460-74425479 Msa0043290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 74425167 74427542 74425167 ID=Msa0043290;Name=Msa0043290
chr1_1 mRNA 74425167 74427542 74425167 ID=Msa0043290-mRNA-1;Parent=Msa0043290;Name=Msa0043290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=251|1|1|1|1|1|5|153|206
chr1_1 exon 74425167 74425489 74425167 ID=Msa0043290-mRNA-1:exon:25070;Parent=Msa0043290-mRNA-1
chr1_1 exon 74425576 74425645 74425576 ID=Msa0043290-mRNA-1:exon:25069;Parent=Msa0043290-mRNA-1
chr1_1 exon 74425977 74426106 74425977 ID=Msa0043290-mRNA-1:exon:25068;Parent=Msa0043290-mRNA-1
chr1_1 exon 74426215 74426395 74426215 ID=Msa0043290-mRNA-1:exon:25067;Parent=Msa0043290-mRNA-1
chr1_1 exon 74427222 74427542 74427222 ID=Msa0043290-mRNA-1:exon:25066;Parent=Msa0043290-mRNA-1
chr1_1 five_prime_UTR 74427292 74427542 74427292 ID=Msa0043290-mRNA-1:five_prime_utr;Parent=Msa0043290-mRNA-1
chr1_1 CDS 74427222 74427291 74427222 ID=Msa0043290-mRNA-1:cds;Parent=Msa0043290-mRNA-1
chr1_1 CDS 74426215 74426395 74426215 ID=Msa0043290-mRNA-1:cds;Parent=Msa0043290-mRNA-1
chr1_1 CDS 74425977 74426106 74425977 ID=Msa0043290-mRNA-1:cds;Parent=Msa0043290-mRNA-1
chr1_1 CDS 74425576 74425645 74425576 ID=Msa0043290-mRNA-1:cds;Parent=Msa0043290-mRNA-1
chr1_1 CDS 74425320 74425489 74425320 ID=Msa0043290-mRNA-1:cds;Parent=Msa0043290-mRNA-1
chr1_1 three_prime_UTR 74425167 74425319 74425167 ID=Msa0043290-mRNA-1:three_prime_utr;Parent=Msa0043290-mRNA-1
Gene Sequence

>Msa0043290

ATGCCAATCCGTTCCAATCAACCTGGTTTATTTGGTAGACCACTTCACGCAGTCCTTGGTGGAGGAAAGATTGCTGATATCTTGCTATGGAAAGACATGAAAACAACGGCAGCAATTGTGGCTGGATTTTCAATGGTTTGGTTTCTCTTTGAAGTGGTTGAATATAATCTTGTTACTCTGCTATGCCACGTCCTCATAGCCCTTATGCTCATTCTCTTTATTTGGTATAATGCAGCTGGATTAATCACTTGGAAACTTCCTGATATCTATGATTTTGAAATCCCAGATTCTACCGTTAGATTCATTCATAAAAAGTTCAACTTGTTCTTGAGGAAATTTTATGACATTTCAACTGGGAAAGATCTTAGATTCTTCTTTGTGACAATAGCTGGTCTATGGATCATGTCTACTATTGGAAATTTCTTCAGCACTGTCAATTTACTATATACAACATTTTTGTGCCTGGTGACACTTCCAATTATGTATGAGCGGTATGAACATGAGGTGGACTATCTAGCAAGTAAAGGAAACCAAGACGTGAAGAGATTGTTCAACAAATTGGATTCTACAGTTCTCAATAGGATTCCAAGGGGACCTGTGAAAGAAAAGAAGTACCGATGA
Protein sequence

>Msa0043290

MPIRSNQPGLFGRPLHAVLGGGKIADILLWKDMKTTAAIVAGFSMVWFLFEVVEYNLVTLLCHVLIALMLILFIWYNAAGLITWKLPDIYDFEIPDSTVRFIHKKFNLFLRKFYDISTGKDLRFFFVTIAGLWIMSTIGNFFSTVNLLYTTFLCLVTLPIMYERYEHEVDYLASKGNQDVKRLFNKLDSTVLNRIPRGPVKEKKYR*