AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0112710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112710 MtrunA17_Chr1g0170381 92.161 1314 66 5 1 1310 1 1281 0.0 2069
Msa0112710 MtrunA17_Chr1g0196931 49.232 1432 523 43 1 1310 1 1350 0.0 929
Msa0112710 MtrunA17_Chr7g0227611 26.531 539 287 24 11 505 13 486 4.43e-21 99.8
Msa0112710 MtrunA17_Chr2g0313971 25.631 515 283 21 11 489 9 459 7.93e-18 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112710 AT3G10650.1 36.864 708 323 21 2 676 5 621 8.43e-96 336
Msa0112710 AT3G10650.2 36.864 708 323 21 2 676 5 621 8.43e-96 336

Find 369 sgRNAs with CRISPR-Local

Find 731 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGATCATGGTGTGCTTTC+TGG 0.106305 1_3:-28152595 Msa0112710:CDS
AGAAATAAGACTATTGTTTA+TGG 0.132023 1_3:-28147880 Msa0112710:exon
CACAGAATCCTTTCCAGTTT+GGG 0.163246 1_3:-28148054 Msa0112710:CDS
CATGCCAGGGTTTATGAAAA+TGG 0.184804 1_3:-28152839 Msa0112710:CDS
GCTTTAACTGAACCCGTATT+TGG 0.199390 1_3:+28151021 None:intergenic
TGTAGAACTTGTGCCATTAT+TGG 0.203769 1_3:+28148480 None:intergenic
CAGACTCAGGGTTCTGTCTT+TGG 0.206552 1_3:-28148760 Msa0112710:CDS
GATGCTCCATCATTTAATTT+TGG 0.207588 1_3:-28150769 Msa0112710:CDS
CTCTCCCTCAAAGGATTATC+TGG 0.208930 1_3:-28151301 Msa0112710:intron
ACCAGTTCTCCGATGGTATT+TGG 0.212657 1_3:-28148334 Msa0112710:CDS
GCCAAGACTAATATAGTTTC+TGG 0.214017 1_3:-28149264 Msa0112710:CDS
AGTAGATTCATCAAAATTAT+TGG 0.215411 1_3:-28152029 Msa0112710:CDS
TCAAAATCCATCTCCATTTC+AGG 0.227178 1_3:-28148011 Msa0112710:CDS
CAACCTCAACAGTTAAATTA+TGG 0.228699 1_3:+28147777 None:intergenic
AAAGCTTGTGCTAGAATAAA+TGG 0.248195 1_3:+28147436 None:intergenic
CGTACCCCAGCAGTAGAAAA+TGG 0.248531 1_3:-28153310 Msa0112710:CDS
CCACAGAATCCTTTCCAGTT+TGG 0.249140 1_3:-28148055 Msa0112710:CDS
ACCATCTGCTATAAAACTTT+TGG 0.249234 1_3:+28151137 None:intergenic
TTCAACTCTGGTACAGCTTC+TGG 0.260413 1_3:-28148547 Msa0112710:CDS
CTTGGTACAACTGACATAAT+AGG 0.263747 1_3:+28152872 None:intergenic
CCATCTCCATTTCAGGCTTC+TGG 0.266861 1_3:-28148004 Msa0112710:CDS
TCAACACTTGTTTCCTTTGA+TGG 0.267812 1_3:+28150790 None:intergenic
TTAGGCATGGATTTGATATA+TGG 0.269918 1_3:-28147520 Msa0112710:three_prime_UTR
GCTGGGGTTGGTGTTGAAGA+TGG 0.270133 1_3:-28152643 Msa0112710:CDS
AAGACTATTGTTTATGGAAA+TGG 0.279187 1_3:-28147874 Msa0112710:three_prime_UTR
TCTTCATCATCCCCGTTGTT+TGG 0.286948 1_3:-28148640 Msa0112710:CDS
AATACAAAATTTGATTGAAC+TGG 0.288499 1_3:+28148100 None:intergenic
CTACATGATAATGAATTAAA+TGG 0.290327 1_3:-28152001 Msa0112710:CDS
GGCAATGATATAGGGTCTTT+TGG 0.292148 1_3:-28152445 Msa0112710:CDS
ACCAATGCGCAGCCTACTTT+TGG 0.292188 1_3:-28148256 Msa0112710:CDS
GCATCAGCATTATCCGATTC+AGG 0.292269 1_3:+28149285 None:intergenic
CTGAAGGTGGCGGTGGATTA+AGG 0.294619 1_3:+28157008 None:intergenic
GTGCCATTATTGGAGCTAAC+AGG 0.295986 1_3:+28148490 None:intergenic
TATCAAATCCATGCCTAATT+CGG 0.297699 1_3:+28147525 None:intergenic
GAGGATTCAACTTTACTAAA+AGG 0.299897 1_3:-28152917 Msa0112710:CDS
CAGATCAGAGATTGATCATT+TGG 0.305574 1_3:-28153446 Msa0112710:CDS
AGTTTACCTGTATCATCTTC+TGG 0.316237 1_3:-28148874 Msa0112710:CDS
TCTCTAACTTTACAGGGTGC+TGG 0.321606 1_3:-28152661 Msa0112710:intron
CACCTAAAACTCTTTGTTGC+TGG 0.322492 1_3:+28154400 None:intergenic
AACATTTCAAGTCAAAATAA+TGG 0.325607 1_3:-28149162 Msa0112710:CDS
CCACCCGTCACTCCAGTATT+TGG 0.327348 1_3:-28148136 Msa0112710:CDS
GGATTAATTCCTGCAGTAAC+TGG 0.330656 1_3:-28151887 Msa0112710:CDS
AAACGCAGAAGTACTGTATT+AGG 0.330674 1_3:-28152466 Msa0112710:CDS
ACCGATGAAGAGAAAGTAAA+TGG 0.338012 1_3:+28150712 None:intergenic
CTTCATCATCCCCGTTGTTT+GGG 0.338477 1_3:-28148639 Msa0112710:CDS
GCAACAATAGATGAAGTTAT+TGG 0.338734 1_3:+28151060 None:intergenic
GGCACAAGTTCTACATTGTT+TGG 0.339146 1_3:-28148472 Msa0112710:CDS
TAACTGTTGAGGTTGAATTC+TGG 0.341032 1_3:-28147769 Msa0112710:three_prime_UTR
CTCTAACTTTACAGGGTGCT+GGG 0.347804 1_3:-28152660 Msa0112710:intron
GTAAACTTATTGATGGTAAA+GGG 0.351961 1_3:+28148890 None:intergenic
ACTGATCTGCCACGAGATCT+TGG 0.352675 1_3:+28152806 None:intergenic
CTTTGCATGCTTAACATTGA+TGG 0.353934 1_3:+28152950 None:intergenic
TTATCCGATTCAGGAACTTT+TGG 0.354164 1_3:+28149294 None:intergenic
TTGGTACAACTGACATAATA+GGG 0.356104 1_3:+28152873 None:intergenic
ATAGATATGACTTGGTTTCT+TGG 0.356321 1_3:+28151848 None:intergenic
ATAACTTCATCTATTGTTGC+TGG 0.359008 1_3:-28151057 Msa0112710:CDS
GGTGATCAAATAACTTCAAC+TGG 0.359493 1_3:-28147490 Msa0112710:three_prime_UTR
TAATCCTCCCCTGTTTAACT+TGG 0.362960 1_3:-28150944 Msa0112710:CDS
CAAACCTTGGGTGTGGAGTC+TGG 0.366757 1_3:+28152743 None:intergenic
CTGCAGACGGTTCTGATGAT+TGG 0.366825 1_3:+28149232 None:intergenic
CCCAGCAAATCTTCTCCTTT+CGG 0.367819 1_3:-28148439 Msa0112710:CDS
TCTACCTCTGAGTTCTCCTT+TGG 0.368014 1_3:-28148379 Msa0112710:CDS
ATGCTAGTACTGAAAGTTGC+AGG 0.369020 1_3:+28149018 None:intergenic
CTTAATCCACCGCCACCTTC+AGG 0.369856 1_3:-28157007 Msa0112710:intron
TTTAACACTTCCTCAAGTTC+AGG 0.371667 1_3:+28154336 None:intergenic
TACGGGGATACTCTTCCTTT+TGG 0.371992 1_3:+28153329 None:intergenic
TTTGTAACCACAGGTAGAAA+TGG 0.373812 1_3:+28149108 None:intergenic
TACAGTTCATTTACTGCTGC+TGG 0.374829 1_3:-28149333 Msa0112710:intron
GGCGGACAGAATGCTGGAAT+TGG 0.376908 1_3:-28148829 Msa0112710:CDS
CAGAGTCAGCCTGTGGCATT+TGG 0.377512 1_3:-28148667 Msa0112710:CDS
ACTGTATTAGGCAATGATAT+AGG 0.378152 1_3:-28152454 Msa0112710:CDS
TCACTACTATTTATAGATAC+AGG 0.378206 1_3:+28152349 None:intergenic
CCTAGTCCCGTCTTTCCATT+TGG 0.378574 1_3:-28148229 Msa0112710:CDS
CGTCGTTTGAGTTCTCTTGA+AGG 0.379166 1_3:+28157165 None:intergenic
TCCCAGTCTGCCCAAACAAC+GGG 0.380002 1_3:+28148629 None:intergenic
AGAGGCAACATTGATTCTAA+TGG 0.380727 1_3:+28153355 None:intergenic
CTGATCTGCCACGAGATCTT+GGG 0.387151 1_3:+28152807 None:intergenic
TTGGTAGGTTGCATCATTGA+TGG 0.389947 1_3:-28154477 Msa0112710:CDS
TCCCCGTTGTTTGGGCAGAC+TGG 0.390590 1_3:-28148631 Msa0112710:CDS
GGGAGTTTCTCGTTGGGCAC+TGG 0.398034 1_3:-28147959 Msa0112710:CDS
TTACAAAGATAGCTGCTTCC+TGG 0.398070 1_3:+28155999 None:intergenic
AGCCAACCGTTGTTTCTGTT+AGG 0.400267 1_3:+28157109 None:intergenic
GAGTTGAAAACATTTGTTGC+AGG 0.400651 1_3:+28148562 None:intergenic
TAGATATGACTTGGTTTCTT+GGG 0.403226 1_3:+28151849 None:intergenic
TTGTAACCACAGGTAGAAAT+GGG 0.404086 1_3:+28149109 None:intergenic
GACAAGCATGGAGGACAGTA+TGG 0.404215 1_3:-28148182 Msa0112710:CDS
ATCAAATCCATGCCTAATTC+GGG 0.404995 1_3:+28147526 None:intergenic
GGATTAGCAGCTGATCCATT+TGG 0.405487 1_3:+28150961 None:intergenic
CTGTATTAGGCAATGATATA+GGG 0.412141 1_3:-28152453 Msa0112710:CDS
GATACAGCTGTTGGGGAAGA+AGG 0.414327 1_3:-28153397 Msa0112710:CDS
GTTCCTTCAACAGGGCTGTC+AGG 0.418198 1_3:-28150910 Msa0112710:CDS
AGCCTGTCGATTATTCTTGT+AGG 0.418234 1_3:-28147463 Msa0112710:three_prime_UTR
TAAAACAGGTCCAATTGGTT+TGG 0.419990 1_3:-28150824 Msa0112710:CDS
TCCACTAAAACAGGTCCAAT+TGG 0.421107 1_3:-28150829 Msa0112710:CDS
ATCCCTGTTAGCTCCAATAA+TGG 0.421248 1_3:-28148493 Msa0112710:CDS
CCCCGTTGTTTGGGCAGACT+GGG 0.421638 1_3:-28148630 Msa0112710:CDS
GCCATTTACTTTCTCTTCAT+CGG 0.423826 1_3:-28150713 Msa0112710:CDS
ACCGAAAGGAGAAGATTTGC+TGG 0.423853 1_3:+28148438 None:intergenic
GCGGTGGATTAAGGCGTTTA+CGG 0.424963 1_3:+28157017 None:intergenic
CTTGTATCATAGCCCGAATT+AGG 0.426314 1_3:-28147538 Msa0112710:three_prime_UTR
CTGGGGTTGGTGTTGAAGAT+GGG 0.427002 1_3:-28152642 Msa0112710:CDS
ACTTTACAGGGTGCTGGGGT+TGG 0.427212 1_3:-28152655 Msa0112710:intron
TTAAGCATGCAAAGTCCTAC+TGG 0.428095 1_3:-28152941 Msa0112710:CDS
TTGAAACCAAAATTAAATGA+TGG 0.429109 1_3:+28150763 None:intergenic
GCCAACCGTTGTTTCTGTTA+GGG 0.429248 1_3:+28157110 None:intergenic
GAGCTTTGAATTCGAAAGTT+GGG 0.431334 1_3:+28157282 None:intergenic
CAAGGGTTATTAACCATGCC+AGG 0.433302 1_3:-28152853 Msa0112710:CDS
GCAGCTTTGTCCAAACCAAT+TGG 0.433709 1_3:+28150814 None:intergenic
TTCTACAGCTAAGCCAAATA+CGG 0.434291 1_3:-28151034 Msa0112710:CDS
TTAACTTCACCCGTTAGAAT+AGG 0.434686 1_3:+28152286 None:intergenic
TCTGCAGCAAGTTGATAAGA+TGG 0.435333 1_3:-28152164 Msa0112710:CDS
ATGGCTTCCGAAGAGGAAGC+AGG 0.436558 1_3:+28148514 None:intergenic
TCTAGCACAAGCTTTCTGTT+TGG 0.436567 1_3:-28147428 Msa0112710:three_prime_UTR
TCGAAAGAGTCCACTAAAAC+AGG 0.437362 1_3:-28150838 Msa0112710:CDS
AAGGTAAGCAAGGTGGAAAA+TGG 0.437559 1_3:-28151935 Msa0112710:CDS
AGATACAGGGATGTCTGAAT+TGG 0.437960 1_3:+28152363 None:intergenic
TTTGTTGTACGAGGAGGAAC+AGG 0.438807 1_3:-28154442 Msa0112710:CDS
TCCAGCATTCTGTCCGCCCT+TGG 0.440805 1_3:+28148834 None:intergenic
TGTCCGCCCTTGGTTTCCAC+TGG 0.441619 1_3:+28148844 None:intergenic
TCCAAATACCATCGGAGAAC+TGG 0.442740 1_3:+28148333 None:intergenic
GATTTGATATATGGCTTAGT+TGG 0.447263 1_3:-28147511 Msa0112710:three_prime_UTR
CCTGGTGGCGTCTCCTGTAC+AGG 0.450388 1_3:+28151180 None:intergenic
TTTACTTTCTCTTCATCGGT+TGG 0.450567 1_3:-28150709 Msa0112710:CDS
TCCATTTGGTGTAGACTTGT+CGG 0.452022 1_3:+28150975 None:intergenic
AAGTCTGTTTCACCGAATGA+TGG 0.453728 1_3:-28151908 Msa0112710:CDS
ACAGGTTGTTGACCAAATAC+TGG 0.454099 1_3:+28148124 None:intergenic
GACTAGCCTTGTGACGGATT+CGG 0.454488 1_3:+28152413 None:intergenic
GGGTGGATCCAAATTTGAAA+AGG 0.455856 1_3:+28148911 None:intergenic
TGAGCTTTGAATTCGAAAGT+TGG 0.458857 1_3:+28157281 None:intergenic
TGCAGACGGTTCTGATGATT+GGG 0.459209 1_3:+28149233 None:intergenic
GGCTGCTGCTACTTGTTGCA+AGG 0.459282 1_3:+28149049 None:intergenic
GCACCTGACAGCCCTGTTGA+AGG 0.462086 1_3:+28150907 None:intergenic
TTCCTCCCCATTTCTACCTG+TGG 0.462268 1_3:-28149115 Msa0112710:CDS
ATTAAGGCGTTTACGGAAAA+CGG 0.463108 1_3:+28157024 None:intergenic
ATGACTTGGTTTCTTGGGAC+AGG 0.466232 1_3:+28151854 None:intergenic
GAAGAAAACGGTTACGAAAA+CGG 0.467280 1_3:-28157220 Msa0112710:CDS
AAATAGTCAGTCTCAGACTC+AGG 0.467349 1_3:-28148773 Msa0112710:CDS
AGACTGCCAGAAGCCTGAAA+TGG 0.467644 1_3:+28147998 None:intergenic
GTCGTTTGAGTTCTCTTGAA+GGG 0.468405 1_3:+28157166 None:intergenic
GGTAAACTTATTGATGGTAA+AGG 0.471604 1_3:+28148889 None:intergenic
TCCGACAAGTCTACACCAAA+TGG 0.472411 1_3:-28150976 Msa0112710:CDS
CGTGCCAAAAGTTCCTGAAT+CGG 0.472567 1_3:-28149298 Msa0112710:CDS
GCCTGTCGATTATTCTTGTA+GGG 0.474364 1_3:-28147462 Msa0112710:three_prime_UTR
CATTCGGTGAAACAGACTTC+AGG 0.475940 1_3:+28151912 None:intergenic
AAGCACCCCTGCTTCCTCTT+CGG 0.476882 1_3:-28148521 Msa0112710:CDS
TTGTGACGGATTCGGCGTAT+AGG 0.476960 1_3:+28152421 None:intergenic
AATCCTCCCCTGTTTAACTT+GGG 0.477283 1_3:-28150943 Msa0112710:CDS
TTTGCATGCTTAACATTGAT+GGG 0.477627 1_3:+28152951 None:intergenic
TGCCGGAGGGAGTTTCTCGT+TGG 0.480011 1_3:-28147966 Msa0112710:CDS
TGAAAGTTGCAGGGGCACTA+AGG 0.480857 1_3:+28149028 None:intergenic
GAAAACGGAGGTGGAGGATA+CGG 0.481993 1_3:-28157205 Msa0112710:CDS
TCTTCACGCGCCGTCGCCAT+CGG 0.482235 1_3:+28157238 None:intergenic
TCCAGAAACTATATTAGTCT+TGG 0.482456 1_3:+28149263 None:intergenic
ACAGAATCCTTTCCAGTTTG+GGG 0.484558 1_3:-28148053 Msa0112710:CDS
ATTCCATAATTTAACTGTTG+AGG 0.484640 1_3:-28147780 Msa0112710:three_prime_UTR
CATTGGGAGCAGGCCTTCCA+AGG 0.487184 1_3:-28152978 Msa0112710:CDS
AAATTTGATTGAACTGGGAC+AGG 0.487478 1_3:+28148106 None:intergenic
AGAAGCAAGGGGCAATCGCC+AGG 0.488283 1_3:-28156017 Msa0112710:CDS
ACTGGTAGAGGCAACGGGAG+TGG 0.488688 1_3:+28148351 None:intergenic
CTCAAAGGATTATCTGGAGT+TGG 0.489599 1_3:-28151295 Msa0112710:intron
ATGCAGAAGCCTATTCTAAC+GGG 0.489631 1_3:-28152295 Msa0112710:CDS
GCTAGTCTTCTATCCTCAAA+AGG 0.489763 1_3:-28152397 Msa0112710:CDS
TTATAGCAGATGGTAAACTT+AGG 0.493043 1_3:-28151128 Msa0112710:CDS
GATACAGGTAAACTTATTGA+TGG 0.493079 1_3:+28148883 None:intergenic
TCTGGATAAACTCTAGGATA+AGG 0.493638 1_3:+28152761 None:intergenic
GATCTGTAGATACAGCTGTT+GGG 0.493914 1_3:-28153405 Msa0112710:CDS
AATGTTGCCTCTTAACCAAA+AGG 0.493969 1_3:-28153344 Msa0112710:CDS
GTGGCATGTTCTGTTGAAAC+AGG 0.494091 1_3:+28153274 None:intergenic
GGAGAACTGGTAGAGGCAAC+GGG 0.494974 1_3:+28148346 None:intergenic
ACCAAGGGCGGACAGAATGC+TGG 0.496122 1_3:-28148835 Msa0112710:CDS
CTTGCTTCTTATACAATGCA+TGG 0.496760 1_3:-28147686 Msa0112710:three_prime_UTR
AAAGGAGGAAAGCTGCTACT+AGG 0.497306 1_3:+28152220 None:intergenic
GCAGGAATTAATCCATCATT+CGG 0.497792 1_3:+28151896 None:intergenic
AGATGACAATGATGAACTAA+AGG 0.498503 1_3:+28148411 None:intergenic
GATGACAATGATGAACTAAA+GGG 0.500533 1_3:+28148412 None:intergenic
GTCTTTGGCAGCACTATAAG+TGG 0.500905 1_3:-28148745 Msa0112710:CDS
AGATCTGTAGATACAGCTGT+TGG 0.501343 1_3:-28153406 Msa0112710:CDS
GGCAGAGGAACTGCTACTGC+TGG 0.502149 1_3:+28148966 None:intergenic
CCAAATGGAAAGACGGGACT+AGG 0.503306 1_3:+28148229 None:intergenic
TTTGTTGCAGGACTTGAAGA+AGG 0.503431 1_3:+28148574 None:intergenic
TAACATTGATGGGGAAACCT+TGG 0.503829 1_3:+28152961 None:intergenic
GACGGTTCTGATGATTGGGC+AGG 0.504109 1_3:+28149237 None:intergenic
CAGGCTGCAAATGAGTCATC+TGG 0.506309 1_3:-28154423 Msa0112710:CDS
GAGGAACCTGAAGGTGGCGG+TGG 0.507476 1_3:+28157001 None:intergenic
GCCGGAGGGAGTTTCTCGTT+GGG 0.509609 1_3:-28147965 Msa0112710:CDS
AACTAGCAAAAGCTTACATT+GGG 0.509912 1_3:-28152994 Msa0112710:CDS
TTAACAGAAGCTGAACCAAA+TGG 0.512648 1_3:+28148214 None:intergenic
ACTTTCTCTTCATCGGTTGG+TGG 0.513708 1_3:-28150706 Msa0112710:CDS
GGACAAAGCTGCACCATCAA+AGG 0.514900 1_3:-28150803 Msa0112710:CDS
ATTAACCTATCTGATGGAGT+TGG 0.515768 1_3:-28154363 Msa0112710:CDS
TCTCAGCATGCACTCGATCA+TGG 0.519783 1_3:-28152607 Msa0112710:CDS
AACGGTTACGAAAACGGAGG+TGG 0.521967 1_3:-28157214 Msa0112710:CDS
CCTGTACAGGAGACGCCACC+AGG 0.523861 1_3:-28151180 Msa0112710:CDS
CGGAGAACTGGTAGAGGCAA+CGG 0.524490 1_3:+28148345 None:intergenic
TTGTTGCAGGACTTGAAGAA+GGG 0.525972 1_3:+28148575 None:intergenic
TCGAAATCAACAGAGCTGTC+AGG 0.527048 1_3:-28150874 Msa0112710:CDS
AATTTGAAAAGGGAAGTTGT+TGG 0.527338 1_3:+28148922 None:intergenic
GTATTAGTATTAAACACAAC+AGG 0.528688 1_3:-28147910 Msa0112710:CDS
GTACCCCAGCAGTAGAAAAT+GGG 0.529846 1_3:-28153309 Msa0112710:CDS
GATCAAATTAACCTATCTGA+TGG 0.531927 1_3:-28154369 Msa0112710:CDS
GTGGAGTCTGGATAAACTCT+AGG 0.532063 1_3:+28152755 None:intergenic
GTTCTACATTGTTTGGCGCT+TGG 0.532940 1_3:-28148465 Msa0112710:CDS
GCTGTCGGCGGTCGATCGTA+CGG 0.535109 1_3:+28157142 None:intergenic
GGTTACGAAAACGGAGGTGG+AGG 0.535269 1_3:-28157211 Msa0112710:CDS
AAATTGTCATACACTGGAAG+TGG 0.536758 1_3:+28153255 None:intergenic
GCTGAACCAAATGGAAAGAC+GGG 0.537369 1_3:+28148223 None:intergenic
GCGACGGCGCGTGAAGAAAA+CGG 0.537452 1_3:-28157232 Msa0112710:CDS
ACTTTCCGATAGATATGACT+TGG 0.539148 1_3:+28151840 None:intergenic
CAACTAGCAAAAGCTTACAT+TGG 0.539351 1_3:-28152995 Msa0112710:CDS
CAGATCAGTTATTTATAACA+TGG 0.540968 1_3:-28152792 Msa0112710:CDS
GTAAACCAACTCCATCAGAT+AGG 0.542212 1_3:+28154358 None:intergenic
GTGCTTTCTGGAACTAAACA+AGG 0.542252 1_3:-28152583 Msa0112710:CDS
ACGACGAATGTATTTACCTC+TGG 0.542508 1_3:-28149186 Msa0112710:CDS
TTAGGGTTTCTCAGAGCTGT+CGG 0.542526 1_3:+28157127 None:intergenic
CTGGCATGGTTAATAACCCT+TGG 0.543490 1_3:+28152854 None:intergenic
GCTGCTGCTACTTGTTGCAA+GGG 0.544845 1_3:+28149050 None:intergenic
ATCCTCCCCTGTTTAACTTG+GGG 0.545744 1_3:-28150942 Msa0112710:CDS
TAAGCATGCAAAGTCCTACT+GGG 0.546204 1_3:-28152940 Msa0112710:CDS
ATCTGTAGATACAGCTGTTG+GGG 0.546576 1_3:-28153404 Msa0112710:CDS
TCAGCCGCATGAGTAGAGAC+AGG 0.547542 1_3:+28151228 None:intergenic
CCATCGGAGAGCAGAGAGAG+TGG 0.551057 1_3:+28157254 None:intergenic
ATAGATGAAGTTATTGGTGT+TGG 0.552004 1_3:+28151066 None:intergenic
TCTGAGCCAGAAGATGATAC+AGG 0.552344 1_3:+28148868 None:intergenic
CCACTCTCTCTGCTCTCCGA+TGG 0.553661 1_3:-28157254 Msa0112710:exon
CCAGAAGCCTGAAATGGAGA+TGG 0.553662 1_3:+28148004 None:intergenic
TGGCTTCCGAAGAGGAAGCA+GGG 0.554976 1_3:+28148515 None:intergenic
AGAAACCAAGTCATATCTAT+CGG 0.555465 1_3:-28151845 Msa0112710:CDS
TGCCATTATTGGAGCTAACA+GGG 0.555913 1_3:+28148491 None:intergenic
AGGACAAGCTCTTCGAAGCA+TGG 0.555980 1_3:-28152056 Msa0112710:CDS
CAAAAGCTTACATTGGGAGC+AGG 0.556456 1_3:-28152988 Msa0112710:CDS
ATGGAAGATGACAACTTCGA+TGG 0.556816 1_3:+28152085 None:intergenic
TCGACATTCTTCAAGTTGGT+AGG 0.557513 1_3:-28154492 Msa0112710:CDS
TCCAAAAGTAGGCTGCGCAT+TGG 0.558615 1_3:+28148255 None:intergenic
GGCAGTCTAGAATTTAATGC+CGG 0.558688 1_3:-28147983 Msa0112710:CDS
ACAGAGCTGTCAGGTGCTGA+TGG 0.558939 1_3:-28150865 Msa0112710:CDS
CATGCAGAAGCCTATTCTAA+CGG 0.560327 1_3:-28152296 Msa0112710:CDS
AAGAGCTTGTCCTCGTAACA+TGG 0.561039 1_3:+28152066 None:intergenic
CACTACTATTTATAGATACA+GGG 0.561327 1_3:+28152350 None:intergenic
CAAGTAAACGATAAAATACA+AGG 0.561947 1_3:+28147557 None:intergenic
TTAGTCGACATTCTTCAAGT+TGG 0.562070 1_3:-28154496 Msa0112710:intron
ACTCAAAGCTGAGCTCGACC+AGG 0.562832 1_3:-28150648 Msa0112710:intron
AACGGGAGTGGATGCTCCAA+AGG 0.563728 1_3:+28148363 None:intergenic
AGTTTCTCGTTGGGCACTGG+TGG 0.563877 1_3:-28147956 Msa0112710:CDS
ACTGGTGGTGTTGACAAGTC+TGG 0.565165 1_3:-28147941 Msa0112710:CDS
GCCCTACAAGAATAATCGAC+AGG 0.565218 1_3:+28147461 None:intergenic
AGCTGAACCAAATGGAAAGA+CGG 0.566297 1_3:+28148222 None:intergenic
TACTCAAAAGTTGACATCAA+AGG 0.569442 1_3:-28151954 Msa0112710:CDS
ATGGTATTTGGATCATCCAC+AGG 0.569571 1_3:-28148322 Msa0112710:CDS
GGTGGATCCAAATTTGAAAA+GGG 0.570061 1_3:+28148912 None:intergenic
AGGAAAGCTGCTACTAGGCA+TGG 0.571237 1_3:+28152225 None:intergenic
GTAAAATTATTTGTAACCAC+AGG 0.571410 1_3:+28149099 None:intergenic
TATTATGTCAGTTGTACCAA+GGG 0.571469 1_3:-28152870 Msa0112710:CDS
ATACAGCTGTTGGGGAAGAA+GGG 0.571482 1_3:-28153396 Msa0112710:CDS
TAAATGGCAAACCTTGGGTG+TGG 0.572064 1_3:+28152736 None:intergenic
ATCATAGCCCGAATTAGGCA+TGG 0.572458 1_3:-28147533 Msa0112710:three_prime_UTR
CAGAAACAGTACAAGAAGCA+AGG 0.572523 1_3:-28156030 Msa0112710:CDS
TGCTAGTACTGAAAGTTGCA+GGG 0.572931 1_3:+28149019 None:intergenic
TGCCTCTACCAGTTCTCCGA+TGG 0.573147 1_3:-28148341 Msa0112710:CDS
TTCCCCAAGTTAAACAGGGG+AGG 0.575055 1_3:+28150940 None:intergenic
GGACTAGGATTTCCAAAAGT+AGG 0.575128 1_3:+28148244 None:intergenic
ATCTTCTGGCTCAGAACCAG+TGG 0.575191 1_3:-28148860 Msa0112710:CDS
GTCTAGAATTTAATGCCGGA+GGG 0.577155 1_3:-28147979 Msa0112710:CDS
ATACAAAATTTGATTGAACT+GGG 0.581649 1_3:+28148101 None:intergenic
GAGAAAGTAAATGGCACTTG+TGG 0.581780 1_3:+28150721 None:intergenic
AGAAACAGTACAAGAAGCAA+GGG 0.582355 1_3:-28156029 Msa0112710:CDS
GAGTCTGAACCAGTTACTGC+AGG 0.582828 1_3:+28151878 None:intergenic
CATGTTCTGTTGAAACAGGA+TGG 0.583307 1_3:+28153278 None:intergenic
TTGTTATTGTTTGTTGTACG+AGG 0.583936 1_3:-28154451 Msa0112710:CDS
GTTGACATCAAAGGTAAGCA+AGG 0.584745 1_3:-28151945 Msa0112710:CDS
GCCCAACGAGAAACTCCCTC+CGG 0.584894 1_3:+28147964 None:intergenic
ACCATCAAAATCTAGTGAGA+TGG 0.587047 1_3:-28152197 Msa0112710:CDS
ACCCTAACAGAAACAACGGT+TGG 0.588799 1_3:-28157111 Msa0112710:CDS
TACCATCGGAGAACTGGTAG+AGG 0.589791 1_3:+28148339 None:intergenic
CTCAGAACCAGTGGAAACCA+AGG 0.590254 1_3:-28148851 Msa0112710:CDS
AGACGATGTCACTGAGGCAG+AGG 0.590476 1_3:+28148951 None:intergenic
GGCTTCCGAAGAGGAAGCAG+GGG 0.591832 1_3:+28148516 None:intergenic
CAGAATCCTTTCCAGTTTGG+GGG 0.592521 1_3:-28148052 Msa0112710:CDS
CAGCCGCATGAGTAGAGACA+GGG 0.595649 1_3:+28151229 None:intergenic
TCTACAGCTAAGCCAAATAC+GGG 0.595872 1_3:-28151033 Msa0112710:CDS
TTCCCAGTCTGCCCAAACAA+CGG 0.596762 1_3:+28148628 None:intergenic
ATTATTGGAGCTAACAGGGA+TGG 0.596828 1_3:+28148495 None:intergenic
ATTCTGTATGAGTGCACATG+AGG 0.599448 1_3:-28151780 Msa0112710:intron
TCTTTGGCAGCACTATAAGT+GGG 0.599546 1_3:-28148744 Msa0112710:CDS
TGTGGCAGCCTTAGTACCGA+TGG 0.600133 1_3:+28152124 None:intergenic
TGATCTGCCACGAGATCTTG+GGG 0.600389 1_3:+28152808 None:intergenic
AGTTGGTTTACCTGAACTTG+AGG 0.601271 1_3:-28154346 Msa0112710:CDS
AGAAAGTGTAATAATATGAG+AGG 0.603114 1_3:+28157350 None:intergenic
TAAGTGATGAACCTCTGTGC+GGG 0.603442 1_3:+28157070 None:intergenic
TTATCCAGACTCCACACCCA+AGG 0.605288 1_3:-28152747 Msa0112710:intron
ACTTATTGATGGTAAAGGGG+TGG 0.607333 1_3:+28148894 None:intergenic
TAAACTTATTGATGGTAAAG+GGG 0.608099 1_3:+28148891 None:intergenic
AGTCTAGAATTTAATGCCGG+AGG 0.608439 1_3:-28147980 Msa0112710:CDS
CATGGAGGACAGTATGGCTG+AGG 0.609536 1_3:-28148176 Msa0112710:CDS
GAACTAAAGGGAGTACCGAA+AGG 0.610802 1_3:+28148424 None:intergenic
TTGACTTGAAATGTTGCCAG+AGG 0.611651 1_3:+28149170 None:intergenic
AAGGGTTATTAACCATGCCA+GGG 0.614167 1_3:-28152852 Msa0112710:CDS
ACGGTTCTGATGATTGGGCA+GGG 0.614446 1_3:+28149238 None:intergenic
TCTAACTTTACAGGGTGCTG+GGG 0.614485 1_3:-28152659 Msa0112710:intron
TTGCATGCTTAACATTGATG+GGG 0.616470 1_3:+28152952 None:intergenic
GGTCGAGCTCAGCTTTGAGT+CGG 0.616799 1_3:+28150651 None:intergenic
GACGACACTGCAGATGAACC+TGG 0.617585 1_3:+28151162 None:intergenic
TAATAATGATCAGACAAGCA+TGG 0.619478 1_3:-28148194 Msa0112710:CDS
ACTATAAGTGGGTCCACCGT+TGG 0.620000 1_3:-28148733 Msa0112710:CDS
CCAAACTGGAAAGGATTCTG+TGG 0.620310 1_3:+28148055 None:intergenic
CTATTATGTCAGTTGTACCA+AGG 0.623477 1_3:-28152871 Msa0112710:CDS
CCGAAAGGAGAAGATTTGCT+GGG 0.623835 1_3:+28148439 None:intergenic
GAAGAGGAACCTGAAGGTGG+CGG 0.623846 1_3:+28156998 None:intergenic
GGTAAACTTAGGAATGCTGA+TGG 0.623941 1_3:-28151117 Msa0112710:CDS
TGTTGCAGGACTTGAAGAAG+GGG 0.626635 1_3:+28148576 None:intergenic
TTGAGGAGCTGATGCACCTG+TGG 0.627402 1_3:+28148306 None:intergenic
ATAGAAGACTAGCCTTGTGA+CGG 0.627658 1_3:+28152407 None:intergenic
AAAGTTGAATCCTCCCCAGT+AGG 0.627661 1_3:+28152926 None:intergenic
TCTCTGCTCTCCGATGGCGA+CGG 0.630042 1_3:-28157248 Msa0112710:exon
CGTTAGAATAGGCTTCTGCA+TGG 0.630075 1_3:+28152297 None:intergenic
AGGGATGTCTGAATTGGTCA+AGG 0.630188 1_3:+28152369 None:intergenic
AATAGTCAGTCTCAGACTCA+GGG 0.631201 1_3:-28148772 Msa0112710:CDS
TGGTTCTATAGTTGATGAGA+AGG 0.632352 1_3:-28151097 Msa0112710:CDS
GAAGATGAACCAAATGCCAC+AGG 0.633678 1_3:+28148658 None:intergenic
AACAGGGATGGCTTCCGAAG+AGG 0.635122 1_3:+28148507 None:intergenic
TGACCAAATACTGGAGTGAC+GGG 0.635218 1_3:+28148133 None:intergenic
TTATTGTTTGTTGTACGAGG+AGG 0.636005 1_3:-28154448 Msa0112710:CDS
GTGGATGATCCAAATACCAT+CGG 0.636629 1_3:+28148325 None:intergenic
GCAAAACCACTAGTAGCACT+AGG 0.636810 1_3:+28148700 None:intergenic
TGCTTTCTGGAACTAAACAA+GGG 0.637007 1_3:-28152582 Msa0112710:CDS
TTGACCAAATACTGGAGTGA+CGG 0.637556 1_3:+28148132 None:intergenic
TAGCCGTGCCAAATTGTCAG+TGG 0.639230 1_3:-28152260 Msa0112710:CDS
TCAGAACCAGTGGAAACCAA+GGG 0.640669 1_3:-28148850 Msa0112710:CDS
CATGCAAAGTCCTACTGGGG+AGG 0.645056 1_3:-28152936 Msa0112710:CDS
ATTGATGGGGAAACCTTGGA+AGG 0.652028 1_3:+28152965 None:intergenic
CTAGCACCTAGTGCTACTAG+TGG 0.652655 1_3:-28148706 Msa0112710:CDS
TGGTACAACTGACATAATAG+GGG 0.652943 1_3:+28152874 None:intergenic
TATACGCCGAATCCGTCACA+AGG 0.654244 1_3:-28152419 Msa0112710:CDS
AACCACAGGTAGAAATGGGG+AGG 0.655993 1_3:+28149113 None:intergenic
TAAAGCAGAAGACTTTCACC+AGG 0.658670 1_3:-28154317 Msa0112710:intron
ACTAGGTGCTAGAGTACCAA+CGG 0.659274 1_3:+28148717 None:intergenic
ATCAAATAACTTCAACTGGG+CGG 0.661986 1_3:-28147486 Msa0112710:three_prime_UTR
GAAACAGTACAAGAAGCAAG+GGG 0.662764 1_3:-28156028 Msa0112710:CDS
GCTGAAGTGAATGAGAATTG+AGG 0.663234 1_3:+28148289 None:intergenic
ATCCCCTGTCTCTACTCATG+CGG 0.666287 1_3:-28151232 Msa0112710:CDS
AAAGAAGAGGAACCTGAAGG+TGG 0.670473 1_3:+28156995 None:intergenic
GCTAGTACTGAAAGTTGCAG+GGG 0.670831 1_3:+28149020 None:intergenic
GGAGAATTATCATTCACATG+TGG 0.672015 1_3:+28152106 None:intergenic
TTTCCACTGACAATTTGGCA+CGG 0.678388 1_3:+28152257 None:intergenic
GGGTTTCTCAGAGCTGTCGG+CGG 0.683481 1_3:+28157130 None:intergenic
GACATCAAAGGTAAGCAAGG+TGG 0.685929 1_3:-28151942 Msa0112710:CDS
AGAAACCCTAACAGAAACAA+CGG 0.687559 1_3:-28157115 Msa0112710:CDS
GGCTTCTGCATGGAAGACGA+TGG 0.688359 1_3:+28152307 None:intergenic
GCATGCTGAGATGAAGATGA+CGG 0.691518 1_3:+28152619 None:intergenic
GTGATCAAATAACTTCAACT+GGG 0.694987 1_3:-28147489 Msa0112710:three_prime_UTR
CCCAGTCTGCCCAAACAACG+GGG 0.695809 1_3:+28148630 None:intergenic
TTGTCATCTTCCATGTTACG+AGG 0.696142 1_3:-28152076 Msa0112710:CDS
AATGATGTAGATACTGCAGA+CGG 0.697541 1_3:+28149219 None:intergenic
GCTTTCTGGAACTAAACAAG+GGG 0.703365 1_3:-28152581 Msa0112710:intron
TTCAACACAGAGTCAGCCTG+TGG 0.705833 1_3:-28148674 Msa0112710:CDS
TGTAACCACAGGTAGAAATG+GGG 0.706203 1_3:+28149110 None:intergenic
GCTTGTGCTAGAATAAATGG+AGG 0.707552 1_3:+28147439 None:intergenic
GAACCAGTGGAAACCAAGGG+CGG 0.708215 1_3:-28148847 Msa0112710:CDS
AAGGCGTTTACGGAAAACGG+AGG 0.711061 1_3:+28157027 None:intergenic
AAGCATGCAAAGTCCTACTG+GGG 0.714160 1_3:-28152939 Msa0112710:CDS
GTAAGTGATGAACCTCTGTG+CGG 0.724444 1_3:+28157069 None:intergenic
TGCTCCAAAGGAGAACTCAG+AGG 0.728919 1_3:+28148375 None:intergenic
CCAAATACTGGAGTGACGGG+TGG 0.729133 1_3:+28148136 None:intergenic
AGCCGCATGAGTAGAGACAG+GGG 0.729354 1_3:+28151230 None:intergenic
AACTCATTGATCCCGCACAG+AGG 0.737092 1_3:-28157081 Msa0112710:CDS
TAATGATCAGACAAGCATGG+AGG 0.745892 1_3:-28148191 Msa0112710:CDS
AGACGAAGACGATGTCACTG+AGG 0.758059 1_3:+28148945 None:intergenic
AGGTGCTAGAGTACCAACGG+TGG 0.786628 1_3:+28148720 None:intergenic
GAAAACGGTTACGAAAACGG+AGG 0.807806 1_3:-28157217 Msa0112710:CDS
GACACTGCAGATGAACCTGG+TGG 0.827669 1_3:+28151165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTAATTATATTTTGTT+TGG + chr1_3:28149827-28149846 None:intergenic 10.0%
!! CAAACAAAATATAATTAAAA+AGG - chr1_3:28149825-28149844 Msa0112710:intron 10.0%
!! TATATATATATATCAAAGAT+AGG + chr1_3:28151545-28151564 None:intergenic 10.0%
!! TTAAAATAATTATTATACAC+AGG + chr1_3:28155099-28155118 None:intergenic 10.0%
!! TAAAAATTATTATTATACAC+AGG + chr1_3:28155181-28155200 None:intergenic 10.0%
!! AATTATAATTATGATAATCA+CGG + chr1_3:28155303-28155322 None:intergenic 10.0%
!! ATAGTTTATTTAAATGGAAT+AGG + chr1_3:28149450-28149469 None:intergenic 15.0%
!! TAAGCAATAGTTTATTTAAA+TGG + chr1_3:28149456-28149475 None:intergenic 15.0%
!!! AAAAAGGGAATTTTTATTAT+TGG + chr1_3:28149789-28149808 None:intergenic 15.0%
!! CTTAATTATTTACACATTAT+TGG + chr1_3:28150677-28150696 None:intergenic 15.0%
!! AATAACCATATAAATAAAAG+AGG - chr1_3:28151007-28151026 Msa0112710:CDS 15.0%
!! TTTGATAAAAGTTTATAAAG+AGG + chr1_3:28154330-28154349 None:intergenic 15.0%
!!! TTTAAAATGACTATTATGTA+CGG + chr1_3:28155145-28155164 None:intergenic 15.0%
!!! TTTAAAATACCTATTATACA+CGG + chr1_3:28155228-28155247 None:intergenic 15.0%
!!! ATTTTTAGTTCACACATTTA+AGG - chr1_3:28148469-28148488 Msa0112710:CDS 20.0%
!!! TTTATCCTTTGTGATTTTTT+TGG - chr1_3:28148710-28148729 Msa0112710:CDS 20.0%
!!! TTATCCTTTGTGATTTTTTT+GGG - chr1_3:28148711-28148730 Msa0112710:CDS 20.0%
!!! TACTATTTGTTCATTTTTCT+AGG - chr1_3:28149014-28149033 Msa0112710:CDS 20.0%
!!! TCTATCATTTTTTGTACTTA+TGG - chr1_3:28149695-28149714 Msa0112710:intron 20.0%
!! AAATATCTGCCATATAAATA+TGG + chr1_3:28149866-28149885 None:intergenic 20.0%
!!! TGTTATTATTGATAATAGCA+TGG - chr1_3:28149968-28149987 Msa0112710:intron 20.0%
!! TTTAAAGAGATCAATAACTA+AGG - chr1_3:28150031-28150050 Msa0112710:intron 20.0%
!! TCCAATATACTTTAAGTAAA+TGG + chr1_3:28152049-28152068 None:intergenic 20.0%
!! TACAATTACTTTCGATTATT+AGG - chr1_3:28152208-28152227 Msa0112710:CDS 20.0%
!! AGTAGATTCATCAAAATTAT+TGG - chr1_3:28152737-28152756 Msa0112710:intron 20.0%
!!! CTACATGATAATGAATTAAA+TGG - chr1_3:28152765-28152784 Msa0112710:CDS 20.0%
!! TTTCAAGAAACATTAATGTT+TGG + chr1_3:28153154-28153173 None:intergenic 20.0%
!! TTGAAACCAAAATTAAATGA+TGG + chr1_3:28154006-28154025 None:intergenic 20.0%
!! AACTTATACATGTTGAAATT+TGG - chr1_3:28154257-28154276 Msa0112710:intron 20.0%
!! ACTTATACATGTTGAAATTT+GGG - chr1_3:28154258-28154277 Msa0112710:intron 20.0%
!! TTTGATAAGAGTTTATAAAG+AGG + chr1_3:28154671-28154690 None:intergenic 20.0%
!! ATTATTCCCTATTATTGTTT+AGG - chr1_3:28154787-28154806 Msa0112710:intron 20.0%
!! ATGATACCTAAACAATAATA+GGG + chr1_3:28154796-28154815 None:intergenic 20.0%
!! AATGATACCTAAACAATAAT+AGG + chr1_3:28154797-28154816 None:intergenic 20.0%
!! TCAAATTGTATAATGTATAC+AGG + chr1_3:28154955-28154974 None:intergenic 20.0%
!! TTTAATAGTTATGACAATCA+CGG + chr1_3:28154987-28155006 None:intergenic 20.0%
!! ATAACTATTAAAATTACGCA+CGG - chr1_3:28154995-28155014 Msa0112710:intron 20.0%
!! TTAAAATGACTATTATGTAC+GGG + chr1_3:28155144-28155163 None:intergenic 20.0%
!! TTAAAATACCTATTATACAC+GGG + chr1_3:28155227-28155246 None:intergenic 20.0%
!! TAAATGAACTGTAAATGAAA+GGG + chr1_3:28155426-28155445 None:intergenic 20.0%
!!! AACATTTCAAGTCAAAATAA+TGG - chr1_3:28155604-28155623 Msa0112710:intron 20.0%
!! ATACAAAATTTGATTGAACT+GGG + chr1_3:28156668-28156687 None:intergenic 20.0%
!! AATACAAAATTTGATTGAAC+TGG + chr1_3:28156669-28156688 None:intergenic 20.0%
!!! GTTCAATCAAATTTTGTATT+TGG - chr1_3:28156669-28156688 Msa0112710:intron 20.0%
!! AGAAATAAGACTATTGTTTA+TGG - chr1_3:28156886-28156905 Msa0112710:intron 20.0%
!! AGAAAGTGTAATAATATGAG+AGG + chr1_3:28147419-28147438 None:intergenic 25.0%
! TGCAAAAATTAGGGTTTAAT+CGG + chr1_3:28147460-28147479 None:intergenic 25.0%
! AGCTAAAAAAATGAAAGAAG+AGG + chr1_3:28147787-28147806 None:intergenic 25.0%
! AATCAAAACTTGACGAAATT+TGG - chr1_3:28148944-28148963 Msa0112710:CDS 25.0%
! GACTAATGAACATTACTTAT+AGG - chr1_3:28149117-28149136 Msa0112710:CDS 25.0%
! TGGAATTGGAATAACTAAAT+TGG - chr1_3:28149362-28149381 Msa0112710:intron 25.0%
!! TAACTAAATTGGTAATCTTC+TGG - chr1_3:28149373-28149392 Msa0112710:intron 25.0%
! ATAAACTATTGCTTAATGCT+TGG - chr1_3:28149461-28149480 Msa0112710:intron 25.0%
!! AATAGTTAATAGCAGTTTTG+AGG - chr1_3:28149633-28149652 Msa0112710:intron 25.0%
! TATGAAATATAAACTGTGCA+TGG - chr1_3:28149658-28149677 Msa0112710:intron 25.0%
! TTGAAAATAGGAATTCATGA+TGG - chr1_3:28149752-28149771 Msa0112710:intron 25.0%
! ATCAATGAGCCATATTTATA+TGG - chr1_3:28149854-28149873 Msa0112710:intron 25.0%
!!! ACTCTTGTTTTAGAGATAAT+GGG - chr1_3:28150111-28150130 Msa0112710:intron 25.0%
!!! GCATAACTGATTTTAGTATT+GGG - chr1_3:28150496-28150515 Msa0112710:intron 25.0%
! AGATAAGATTATTCAAATGC+AGG + chr1_3:28150545-28150564 None:intergenic 25.0%
! TCCTATACTATAGTATGTTA+TGG - chr1_3:28150720-28150739 Msa0112710:CDS 25.0%
! TCCATAACATACTATAGTAT+AGG + chr1_3:28150724-28150743 None:intergenic 25.0%
! TGTGTCATATAGTGTAATAT+AGG - chr1_3:28150893-28150912 Msa0112710:CDS 25.0%
!! CTGTGTCAGTAAAATAATTT+TGG - chr1_3:28150960-28150979 Msa0112710:CDS 25.0%
! AACCATATAAATAAAAGAGG+AGG - chr1_3:28151010-28151029 Msa0112710:CDS 25.0%
!!! AACCTCCTCTTTTATTTATA+TGG + chr1_3:28151015-28151034 None:intergenic 25.0%
! CATAAATCATACAATGACAT+CGG + chr1_3:28151127-28151146 None:intergenic 25.0%
! TGAAAAAAATTGTCATACAC+TGG + chr1_3:28151520-28151539 None:intergenic 25.0%
! ATGTCAATTAGATCATGATA+GGG + chr1_3:28151698-28151717 None:intergenic 25.0%
! CAGATCAGTTATTTATAACA+TGG - chr1_3:28151974-28151993 Msa0112710:CDS 25.0%
! GCCATTTACTTAAAGTATAT+TGG - chr1_3:28152045-28152064 Msa0112710:CDS 25.0%
! CACTACTATTTATAGATACA+GGG + chr1_3:28152419-28152438 None:intergenic 25.0%
! TCACTACTATTTATAGATAC+AGG + chr1_3:28152420-28152439 None:intergenic 25.0%
! CAATATATAAACACAGTTGA+GGG + chr1_3:28153297-28153316 None:intergenic 25.0%
! TCAATATATAAACACAGTTG+AGG + chr1_3:28153298-28153317 None:intergenic 25.0%
!!! TTGTTTTACACCTTTGATTT+TGG - chr1_3:28153378-28153397 Msa0112710:CDS 25.0%
!!! GAGTCTACTTTTTCTAAATT+TGG - chr1_3:28154084-28154103 Msa0112710:intron 25.0%
!!! TCTACTTTTTCTAAATTTGG+TGG - chr1_3:28154087-28154106 Msa0112710:intron 25.0%
! GATGAAAATGTCAATAAAAC+AGG + chr1_3:28154168-28154187 None:intergenic 25.0%
! CTTATACATGTTGAAATTTG+GGG - chr1_3:28154259-28154278 Msa0112710:intron 25.0%
! GATAAAAGTTTATAAAGAGG+AGG + chr1_3:28154327-28154346 None:intergenic 25.0%
!! AAAGTCTTATCTATTCAATG+TGG - chr1_3:28154689-28154708 Msa0112710:intron 25.0%
!! AAGTCTTATCTATTCAATGT+GGG - chr1_3:28154690-28154709 Msa0112710:intron 25.0%
! AACACAGGAAACATATTATT+GGG + chr1_3:28154728-28154747 None:intergenic 25.0%
! AAACACAGGAAACATATTAT+TGG + chr1_3:28154729-28154748 None:intergenic 25.0%
! TAACTATTAAAATTACGCAC+GGG - chr1_3:28154996-28155015 Msa0112710:intron 25.0%
! TAATTATTATACACAGGACA+AGG + chr1_3:28155093-28155112 None:intergenic 25.0%
! ATATCTCTTTCAATTCAACA+GGG + chr1_3:28155347-28155366 None:intergenic 25.0%
! TATATCTCTTTCAATTCAAC+AGG + chr1_3:28155348-28155367 None:intergenic 25.0%
! GTAAATGAACTGTAAATGAA+AGG + chr1_3:28155427-28155446 None:intergenic 25.0%
! GTAAAATTATTTGTAACCAC+AGG + chr1_3:28155670-28155689 None:intergenic 25.0%
!! TAAACTTATTGATGGTAAAG+GGG + chr1_3:28155878-28155897 None:intergenic 25.0%
!! GTAAACTTATTGATGGTAAA+GGG + chr1_3:28155879-28155898 None:intergenic 25.0%
!! CAATCAAATTTTGTATTTGG+AGG - chr1_3:28156672-28156691 Msa0112710:intron 25.0%
! GTATTAGTATTAAACACAAC+AGG - chr1_3:28156856-28156875 Msa0112710:intron 25.0%
! AAGACTATTGTTTATGGAAA+TGG - chr1_3:28156892-28156911 Msa0112710:intron 25.0%
! ATTCCATAATTTAACTGTTG+AGG - chr1_3:28156986-28157005 Msa0112710:intron 25.0%
! AAAAAAAAATCAACACATGC+AGG - chr1_3:28157043-28157062 Msa0112710:CDS 25.0%
! CAAGTAAACGATAAAATACA+AGG + chr1_3:28157212-28157231 None:intergenic 25.0%
TTATATACAAGTTACCCTTG+TGG - chr1_3:28148271-28148290 Msa0112710:CDS 30.0%
!!! TTTTGAGAAAAGTGCTTATG+CGG - chr1_3:28148327-28148346 Msa0112710:CDS 30.0%
TATAAGCTGTTTATCCAAAC+AGG + chr1_3:28148495-28148514 None:intergenic 30.0%
AGCTACTACTAATAACAATC+TGG - chr1_3:28148907-28148926 Msa0112710:CDS 30.0%
!! ATGTTCATTAGTCTTAAGCA+TGG + chr1_3:28149110-28149129 None:intergenic 30.0%
! TGTAACAAATCGAGTTTTCA+TGG - chr1_3:28149209-28149228 Msa0112710:CDS 30.0%
TTATTGTTAGTTATCTCAGC+AGG - chr1_3:28149309-28149328 Msa0112710:CDS 30.0%
!! AACTGAAAAGTGTTTGTGTT+TGG - chr1_3:28149342-28149361 Msa0112710:intron 30.0%
! AAAGTGTTTGTGTTTGGAAT+TGG - chr1_3:28149348-28149367 Msa0112710:intron 30.0%
ATTGCTTAATGCTTGGTTAA+TGG - chr1_3:28149468-28149487 Msa0112710:intron 30.0%
AAATAGGAATTCATGATGGT+TGG - chr1_3:28149756-28149775 Msa0112710:intron 30.0%
AATAGGAATTCATGATGGTT+GGG - chr1_3:28149757-28149776 Msa0112710:intron 30.0%
! TTATATGGCAGATATTTTGC+TGG - chr1_3:28149869-28149888 Msa0112710:intron 30.0%
!! TGGTATTGATATCATTGTGT+TGG - chr1_3:28149910-28149929 Msa0112710:intron 30.0%
!!! GACTCTTGTTTTAGAGATAA+TGG - chr1_3:28150110-28150129 Msa0112710:intron 30.0%
! TACATTGAAGGAAGCATATT+CGG + chr1_3:28150188-28150207 None:intergenic 30.0%
!! TTGTTATTGTTTGTTGTACG+AGG - chr1_3:28150315-28150334 Msa0112710:intron 30.0%
GATCAAATTAACCTATCTGA+TGG - chr1_3:28150397-28150416 Msa0112710:intron 30.0%
!! GGCATAACTGATTTTAGTAT+TGG - chr1_3:28150495-28150514 Msa0112710:intron 30.0%
TCTTATCTGCATTGAATTCT+CGG - chr1_3:28150557-28150576 Msa0112710:intron 30.0%
GATGTCATATAGTGTAGTAT+AGG - chr1_3:28150787-28150806 Msa0112710:CDS 30.0%
! GAGTGACATTAAATTTTACC+TGG - chr1_3:28150926-28150945 Msa0112710:CDS 30.0%
!! TGTTTTGAATCTTGATGACA+CGG - chr1_3:28151052-28151071 Msa0112710:CDS 30.0%
TAAGCTTCAATGAATTAGAC+AGG + chr1_3:28151201-28151220 None:intergenic 30.0%
! TCATTGAAGCTTATTTCTTG+TGG - chr1_3:28151208-28151227 Msa0112710:CDS 30.0%
GAAAATAAGAAGAAACAGGT+TGG + chr1_3:28151242-28151261 None:intergenic 30.0%
ACGTGAAAATAAGAAGAAAC+AGG + chr1_3:28151246-28151265 None:intergenic 30.0%
CATGTCAATTAGATCATGAT+AGG + chr1_3:28151699-28151718 None:intergenic 30.0%
TACAACCATATACTGTGTAT+AGG - chr1_3:28151719-28151738 Msa0112710:intron 30.0%
AGAAACCTATACACAGTATA+TGG + chr1_3:28151727-28151746 None:intergenic 30.0%
AACTAGCAAAAGCTTACATT+GGG - chr1_3:28151772-28151791 Msa0112710:intron 30.0%
TTTGCATGCTTAACATTGAT+GGG + chr1_3:28151818-28151837 None:intergenic 30.0%
GAGGATTCAACTTTACTAAA+AGG - chr1_3:28151849-28151868 Msa0112710:CDS 30.0%
TTGGTACAACTGACATAATA+GGG + chr1_3:28151896-28151915 None:intergenic 30.0%
TATTATGTCAGTTGTACCAA+GGG - chr1_3:28151896-28151915 Msa0112710:CDS 30.0%
! AAAACCATTTTCATAAACCC+TGG + chr1_3:28151934-28151953 None:intergenic 30.0%
TTAAGTAAATGGCAAACCTT+GGG + chr1_3:28152038-28152057 None:intergenic 30.0%
TTTAAGTAAATGGCAAACCT+TGG + chr1_3:28152039-28152058 None:intergenic 30.0%
! TCTTGTTTCTCTAACTTTAC+AGG - chr1_3:28152098-28152117 Msa0112710:CDS 30.0%
! CTTGTTTCTCTAACTTTACA+GGG - chr1_3:28152099-28152118 Msa0112710:CDS 30.0%
ACTGTATTAGGCAATGATAT+AGG - chr1_3:28152312-28152331 Msa0112710:CDS 30.0%
CTGTATTAGGCAATGATATA+GGG - chr1_3:28152313-28152332 Msa0112710:CDS 30.0%
! ATCATTTTCCACTGACAATT+TGG + chr1_3:28152517-28152536 None:intergenic 30.0%
!! TCACTAGATTTTGATGGTAA+AGG + chr1_3:28152567-28152586 None:intergenic 30.0%
TACTCAAAAGTTGACATCAA+AGG - chr1_3:28152812-28152831 Msa0112710:CDS 30.0%
!! TAGATATGACTTGGTTTCTT+GGG + chr1_3:28152920-28152939 None:intergenic 30.0%
!! ATAGATATGACTTGGTTTCT+TGG + chr1_3:28152921-28152940 None:intergenic 30.0%
AGAAACCAAGTCATATCTAT+CGG - chr1_3:28152921-28152940 Msa0112710:CDS 30.0%
! TGAGGTTTGAGACTTATATT+TGG - chr1_3:28153004-28153023 Msa0112710:CDS 30.0%
TGTAGTTATCTGTAAGTGTT+TGG - chr1_3:28153055-28153074 Msa0112710:intron 30.0%
CAAGAATGCAAACAAACTAA+CGG + chr1_3:28153111-28153130 None:intergenic 30.0%
ATCATCATGTGAGAACTAAA+TGG + chr1_3:28153335-28153354 None:intergenic 30.0%
!! TTTAGTTCTCACATGATGAT+TGG - chr1_3:28153335-28153354 Msa0112710:CDS 30.0%
AAGCTAAGAACCAAAATCAA+AGG + chr1_3:28153391-28153410 None:intergenic 30.0%
!! TCCAAAAGTTTTATAGCAGA+TGG - chr1_3:28153628-28153647 Msa0112710:intron 30.0%
! ACCATCTGCTATAAAACTTT+TGG + chr1_3:28153632-28153651 None:intergenic 30.0%
TTATAGCAGATGGTAAACTT+AGG - chr1_3:28153638-28153657 Msa0112710:intron 30.0%
ATAGATGAAGTTATTGGTGT+TGG + chr1_3:28153703-28153722 None:intergenic 30.0%
GCAACAATAGATGAAGTTAT+TGG + chr1_3:28153709-28153728 None:intergenic 30.0%
ATAACTTCATCTATTGTTGC+TGG - chr1_3:28153709-28153728 Msa0112710:intron 30.0%
!!! AAAAGTTTTGTTCCTTCAAC+AGG - chr1_3:28153847-28153866 Msa0112710:intron 30.0%
!!! AAAGTTTTGTTCCTTCAACA+GGG - chr1_3:28153848-28153867 Msa0112710:intron 30.0%
!! GATGCTCCATCATTTAATTT+TGG - chr1_3:28153997-28154016 Msa0112710:intron 30.0%
AGTAATCTCATTGGGAATTT+GGG - chr1_3:28154211-28154230 Msa0112710:intron 30.0%
AAAGTCTTACCTATTCAATG+TGG - chr1_3:28154348-28154367 Msa0112710:CDS 30.0%
AAGTCTTACCTATTCAATGT+GGG - chr1_3:28154349-28154368 Msa0112710:CDS 30.0%
CTAACTCATCATTACAAAAC+CGG - chr1_3:28154624-28154643 Msa0112710:intron 30.0%
GATAAGAGTTTATAAAGAGG+AGG + chr1_3:28154668-28154687 None:intergenic 30.0%
ATAACTTACCCGTGTATAAT+AGG - chr1_3:28155216-28155235 Msa0112710:intron 30.0%
! TCCAGAAACTATATTAGTCT+TGG + chr1_3:28155506-28155525 None:intergenic 30.0%
AATTTGAAAAGGGAAGTTGT+TGG + chr1_3:28155847-28155866 None:intergenic 30.0%
! ACAACTTCCCTTTTCAAATT+TGG - chr1_3:28155847-28155866 Msa0112710:intron 30.0%
! GGTAAACTTATTGATGGTAA+AGG + chr1_3:28155880-28155899 None:intergenic 30.0%
GATACAGGTAAACTTATTGA+TGG + chr1_3:28155886-28155905 None:intergenic 30.0%
! GGAATACATCTTTTTCTTCA+GGG - chr1_3:28156157-28156176 Msa0112710:intron 30.0%
GATGACAATGATGAACTAAA+GGG + chr1_3:28156357-28156376 None:intergenic 30.0%
AGATGACAATGATGAACTAA+AGG + chr1_3:28156358-28156377 None:intergenic 30.0%
TAATAATGATCAGACAAGCA+TGG - chr1_3:28156572-28156591 Msa0112710:intron 30.0%
CAACCTCAACAGTTAAATTA+TGG + chr1_3:28156992-28157011 None:intergenic 30.0%
TATCAAATCCATGCCTAATT+CGG + chr1_3:28157244-28157263 None:intergenic 30.0%
TTAGGCATGGATTTGATATA+TGG - chr1_3:28157246-28157265 Msa0112710:exon 30.0%
GATTTGATATATGGCTTAGT+TGG - chr1_3:28157255-28157274 Msa0112710:exon 30.0%
GTGATCAAATAACTTCAACT+GGG - chr1_3:28157277-28157296 Msa0112710:five_prime_UTR 30.0%
AAAGCTTGTGCTAGAATAAA+TGG + chr1_3:28157333-28157352 None:intergenic 30.0%
TTGGGATCGTGCAAAAATTA+GGG + chr1_3:28147469-28147488 None:intergenic 35.0%
!! GAGCTTTGAATTCGAAAGTT+GGG + chr1_3:28147487-28147506 None:intergenic 35.0%
!! TGAGCTTTGAATTCGAAAGT+TGG + chr1_3:28147488-28147507 None:intergenic 35.0%
GAAGAAAACGGTTACGAAAA+CGG - chr1_3:28147546-28147565 Msa0112710:three_prime_UTR 35.0%
AGAAACCCTAACAGAAACAA+CGG - chr1_3:28147651-28147670 Msa0112710:three_prime_UTR 35.0%
! ATTAAGGCGTTTACGGAAAA+CGG + chr1_3:28147745-28147764 None:intergenic 35.0%
! ACATCTTCAATCAGAAGTGT+CGG + chr1_3:28147894-28147913 None:intergenic 35.0%
GTGATTCGTACTTTATGTTG+TGG - chr1_3:28148025-28148044 Msa0112710:CDS 35.0%
! ATATTTTCTGCATGTTGCCT+TGG - chr1_3:28148076-28148095 Msa0112710:CDS 35.0%
! TATTTTCTGCATGTTGCCTT+GGG - chr1_3:28148077-28148096 Msa0112710:CDS 35.0%
TGTGCCCAAAAAAATCACAA+AGG + chr1_3:28148718-28148737 None:intergenic 35.0%
AGAAACAGTACAAGAAGCAA+GGG - chr1_3:28148737-28148756 Msa0112710:CDS 35.0%
GTAAATGCAAAGCACATCTA+AGG + chr1_3:28148845-28148864 None:intergenic 35.0%
! ATTTTTCTAGGCCCTCAATA+TGG - chr1_3:28149026-28149045 Msa0112710:CDS 35.0%
! TTTTTCTAGGCCCTCAATAT+GGG - chr1_3:28149027-28149046 Msa0112710:CDS 35.0%
TTTCTACTCAATGCAGAAGT+AGG + chr1_3:28149086-28149105 None:intergenic 35.0%
GAAATCTGTTGTAGCACAAT+TGG - chr1_3:28149272-28149291 Msa0112710:CDS 35.0%
!!! TGGGTATGTGTGTTTTGATA+TGG - chr1_3:28149402-28149421 Msa0112710:intron 35.0%
CACACAGTGTTGTCAAATAT+CGG - chr1_3:28149500-28149519 Msa0112710:intron 35.0%
! GTGTTGTCAAATATCGGTTA+TGG - chr1_3:28149506-28149525 Msa0112710:intron 35.0%
! TTTTTACAATAGCCACGTCA+TGG - chr1_3:28149535-28149554 Msa0112710:intron 35.0%
ACAATGTTACCGATGGTAAA+TGG + chr1_3:28149599-28149618 None:intergenic 35.0%
AATTCATGATGGTTGGGTAA+TGG - chr1_3:28149763-28149782 Msa0112710:intron 35.0%
TGAATAGCGACGGAAAAAAA+GGG + chr1_3:28149804-28149823 None:intergenic 35.0%
!! TTTTGTTTGGTGAATAGCGA+CGG + chr1_3:28149814-28149833 None:intergenic 35.0%
ATGATATCAATACCAGATGC+CGG + chr1_3:28149905-28149924 None:intergenic 35.0%
!! TGGAGAGCATTATTCATCAT+TGG - chr1_3:28149930-28149949 Msa0112710:intron 35.0%
! GCATTATTCATCATTGGTTG+TGG - chr1_3:28149936-28149955 Msa0112710:intron 35.0%
! GATGCTTTAAGCATGTGAAA+AGG - chr1_3:28149990-28150009 Msa0112710:intron 35.0%
GATCAATAACTAAGGAAGTG+TGG - chr1_3:28150039-28150058 Msa0112710:intron 35.0%
GTTGATCAAATCATGAGTGT+TGG + chr1_3:28150148-28150167 None:intergenic 35.0%
TGATTTGATCAACGAGAACT+TGG - chr1_3:28150155-28150174 Msa0112710:intron 35.0%
AATCATGCACAGTGACTAAT+TGG + chr1_3:28150227-28150246 None:intergenic 35.0%
TTAGTCGACATTCTTCAAGT+TGG - chr1_3:28150270-28150289 Msa0112710:intron 35.0%
!! TTATTGTTTGTTGTACGAGG+AGG - chr1_3:28150318-28150337 Msa0112710:intron 35.0%
ATTAACCTATCTGATGGAGT+TGG - chr1_3:28150403-28150422 Msa0112710:intron 35.0%
TTTAACACTTCCTCAAGTTC+AGG + chr1_3:28150433-28150452 None:intergenic 35.0%
ACAACAAACACAAACACGTT+AGG - chr1_3:28150612-28150631 Msa0112710:intron 35.0%
ACTACACTATATGACATCAC+AGG + chr1_3:28150785-28150804 None:intergenic 35.0%
ATAAAAGAGGAGGTTTCTGT+TGG - chr1_3:28151020-28151039 Msa0112710:CDS 35.0%
TAAAAGAGGAGGTTTCTGTT+GGG - chr1_3:28151021-28151040 Msa0112710:CDS 35.0%
AATGATCAATCTCTGATCTG+TGG + chr1_3:28151320-28151339 None:intergenic 35.0%
CAGATCAGAGATTGATCATT+TGG - chr1_3:28151320-28151339 Msa0112710:intron 35.0%
!! AGAGGCAACATTGATTCTAA+TGG + chr1_3:28151414-28151433 None:intergenic 35.0%
AATGTTGCCTCTTAACCAAA+AGG - chr1_3:28151422-28151441 Msa0112710:intron 35.0%
!! TACTCTTCCTTTTGGTTAAG+AGG + chr1_3:28151432-28151451 None:intergenic 35.0%
! TTATCCCATTTTCTACTGCT+GGG + chr1_3:28151464-28151483 None:intergenic 35.0%
! TTTATCCCATTTTCTACTGC+TGG + chr1_3:28151465-28151484 None:intergenic 35.0%
AAATTGTCATACACTGGAAG+TGG + chr1_3:28151514-28151533 None:intergenic 35.0%
CAACTAGCAAAAGCTTACAT+TGG - chr1_3:28151771-28151790 Msa0112710:intron 35.0%
TTGCATGCTTAACATTGATG+GGG + chr1_3:28151817-28151836 None:intergenic 35.0%
CTTTGCATGCTTAACATTGA+TGG + chr1_3:28151819-28151838 None:intergenic 35.0%
TGGTACAACTGACATAATAG+GGG + chr1_3:28151895-28151914 None:intergenic 35.0%
CTTGGTACAACTGACATAAT+AGG + chr1_3:28151897-28151916 None:intergenic 35.0%
CTATTATGTCAGTTGTACCA+AGG - chr1_3:28151895-28151914 Msa0112710:CDS 35.0%
!! TCTGGATAAACTCTAGGATA+AGG + chr1_3:28152008-28152027 None:intergenic 35.0%
!! TGCTTTCTGGAACTAAACAA+GGG - chr1_3:28152184-28152203 Msa0112710:CDS 35.0%
!! AAACGCAGAAGTACTGTATT+AGG - chr1_3:28152300-28152319 Msa0112710:CDS 35.0%
TTAACTTCACCCGTTAGAAT+AGG + chr1_3:28152483-28152502 None:intergenic 35.0%
!! CTAGATTTTGATGGTAAAGG+AGG + chr1_3:28152564-28152583 None:intergenic 35.0%
ACCATCAAAATCTAGTGAGA+TGG - chr1_3:28152569-28152588 Msa0112710:intron 35.0%
TTCTCCCAAAGAAAAACCAT+CGG - chr1_3:28152626-28152645 Msa0112710:CDS 35.0%
!!! AGTACCGATGGTTTTTCTTT+GGG + chr1_3:28152633-28152652 None:intergenic 35.0%
!!! TAGTACCGATGGTTTTTCTT+TGG + chr1_3:28152634-28152653 None:intergenic 35.0%
AAGAAAAACCATCGGTACTA+AGG - chr1_3:28152634-28152653 Msa0112710:CDS 35.0%
GGAGAATTATCATTCACATG+TGG + chr1_3:28152663-28152682 None:intergenic 35.0%
GCAGGAATTAATCCATCATT+CGG + chr1_3:28152873-28152892 None:intergenic 35.0%
ACTTTCCGATAGATATGACT+TGG + chr1_3:28152929-28152948 None:intergenic 35.0%
!!! GTTATTTTTCTCTCCCTCAA+AGG - chr1_3:28153456-28153475 Msa0112710:intron 35.0%
AACTCCAGATAATCCTTTGA+GGG + chr1_3:28153472-28153491 None:intergenic 35.0%
! GGATGCATTTTCATTAGGAT+AGG + chr1_3:28153518-28153537 None:intergenic 35.0%
!! TGGTTCTATAGTTGATGAGA+AGG - chr1_3:28153669-28153688 Msa0112710:intron 35.0%
TTCTACAGCTAAGCCAAATA+CGG - chr1_3:28153732-28153751 Msa0112710:intron 35.0%
! ACTTTTCCCCAAGTTAAACA+GGG + chr1_3:28153833-28153852 None:intergenic 35.0%
! AACTTTTCCCCAAGTTAAAC+AGG + chr1_3:28153834-28153853 None:intergenic 35.0%
TAAAACAGGTCCAATTGGTT+TGG - chr1_3:28153942-28153961 Msa0112710:intron 35.0%
TCAACACTTGTTTCCTTTGA+TGG + chr1_3:28153979-28153998 None:intergenic 35.0%
GCCATTTACTTTCTCTTCAT+CGG - chr1_3:28154053-28154072 Msa0112710:intron 35.0%
ACCGATGAAGAGAAAGTAAA+TGG + chr1_3:28154057-28154076 None:intergenic 35.0%
TTTACTTTCTCTTCATCGGT+TGG - chr1_3:28154057-28154076 Msa0112710:intron 35.0%
AAAATACAATTGCACCAACC+TGG + chr1_3:28154139-28154158 None:intergenic 35.0%
! ATCAGTTTAGAACTTGTCTC+TGG - chr1_3:28154185-28154204 Msa0112710:intron 35.0%
CAAATTCCCAATGAGATTAC+TGG + chr1_3:28154212-28154231 None:intergenic 35.0%
CAGTAATCTCATTGGGAATT+TGG - chr1_3:28154210-28154229 Msa0112710:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_3:28154283-28154302 Msa0112710:intron 35.0%
TCTGATGCCATGTTGAAATT+TGG - chr1_3:28154464-28154483 Msa0112710:CDS 35.0%
CTGATGCCATGTTGAAATTT+GGG - chr1_3:28154465-28154484 Msa0112710:CDS 35.0%
TGATGCCATGTTGAAATTTG+GGG - chr1_3:28154466-28154485 Msa0112710:CDS 35.0%
TTAGACCCCAAATTTCAACA+TGG + chr1_3:28154474-28154493 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_3:28154283-28154302 Msa0112710:intron 35.0%
TCTGATGCCATGTTGAAATT+TGG - chr1_3:28154464-28154483 Msa0112710:CDS 35.0%
CTGATGCCATGTTGAAATTT+GGG - chr1_3:28154465-28154484 Msa0112710:CDS 35.0%
TGATGCCATGTTGAAATTTG+GGG - chr1_3:28154466-28154485 Msa0112710:CDS 35.0%
TTAGACCCCAAATTTCAACA+TGG + chr1_3:28154474-28154493 None:intergenic 35.0%
! CATTACAAAACCGGTTCATA+AGG - chr1_3:28154633-28154652 Msa0112710:intron 35.0%
TATCTATTCAATGTGGGACT+TGG - chr1_3:28154696-28154715 Msa0112710:intron 35.0%
ATCTATTCAATGTGGGACTT+GGG - chr1_3:28154697-28154716 Msa0112710:intron 35.0%
!! GTGGATGATTTGTTTCAGTT+TGG - chr1_3:28155030-28155049 Msa0112710:intron 35.0%
AGTCAAACTGTATAATGTGC+GGG + chr1_3:28155273-28155292 None:intergenic 35.0%
GAGTCAAACTGTATAATGTG+CGG + chr1_3:28155274-28155293 None:intergenic 35.0%
! TTATCCGATTCAGGAACTTT+TGG + chr1_3:28155475-28155494 None:intergenic 35.0%
GCCAAGACTAATATAGTTTC+TGG - chr1_3:28155502-28155521 Msa0112710:intron 35.0%
AATGATGTAGATACTGCAGA+CGG + chr1_3:28155550-28155569 None:intergenic 35.0%
TTGTAACCACAGGTAGAAAT+GGG + chr1_3:28155660-28155679 None:intergenic 35.0%
TTTGTAACCACAGGTAGAAA+TGG + chr1_3:28155661-28155680 None:intergenic 35.0%
GGTGGATCCAAATTTGAAAA+GGG + chr1_3:28155857-28155876 None:intergenic 35.0%
AGTTTACCTGTATCATCTTC+TGG - chr1_3:28155892-28155911 Msa0112710:intron 35.0%
! AATGCTGGAATTGGCATTTT+TGG - chr1_3:28155946-28155965 Msa0112710:intron 35.0%
! ATGCTGGAATTGGCATTTTT+GGG - chr1_3:28155947-28155966 Msa0112710:intron 35.0%
!!! CATTTTTGGGTTTAGTTCGT+CGG - chr1_3:28155960-28155979 Msa0112710:intron 35.0%
! GGGAATACATCTTTTTCTTC+AGG - chr1_3:28156156-28156175 Msa0112710:intron 35.0%
! TTTTTCTTCAGGGAGTTCAT+CGG - chr1_3:28156167-28156186 Msa0112710:intron 35.0%
! GAGTTGAAAACATTTGTTGC+AGG + chr1_3:28156207-28156226 None:intergenic 35.0%
! GCAACAAATGTTTTCAACTC+TGG - chr1_3:28156207-28156226 Msa0112710:intron 35.0%
! TGTAGAACTTGTGCCATTAT+TGG + chr1_3:28156289-28156308 None:intergenic 35.0%
TTAACAGAAGCTGAACCAAA+TGG + chr1_3:28156555-28156574 None:intergenic 35.0%
AAATTTGATTGAACTGGGAC+AGG + chr1_3:28156663-28156682 None:intergenic 35.0%
!! TGAAATGGAGATGGATTTTG+AGG + chr1_3:28156756-28156775 None:intergenic 35.0%
TCAAAATCCATCTCCATTTC+AGG - chr1_3:28156755-28156774 Msa0112710:intron 35.0%
TAACTGTTGAGGTTGAATTC+TGG - chr1_3:28156997-28157016 Msa0112710:intron 35.0%
AAAAATCAACACATGCAGGT+CGG - chr1_3:28157047-28157066 Msa0112710:CDS 35.0%
CTTGCTTCTTATACAATGCA+TGG - chr1_3:28157080-28157099 Msa0112710:CDS 35.0%
ATCAAATCCATGCCTAATTC+GGG + chr1_3:28157243-28157262 None:intergenic 35.0%
GGTGATCAAATAACTTCAAC+TGG - chr1_3:28157276-28157295 Msa0112710:five_prime_UTR 35.0%
ATCAAATAACTTCAACTGGG+CGG - chr1_3:28157280-28157299 Msa0112710:five_prime_UTR 35.0%
GTTGGGATCGTGCAAAAATT+AGG + chr1_3:28147470-28147489 None:intergenic 40.0%
!! TTCTCTTGAAGGGTCGTTTT+CGG + chr1_3:28147593-28147612 None:intergenic 40.0%
! GTCGTTTGAGTTCTCTTGAA+GGG + chr1_3:28147603-28147622 None:intergenic 40.0%
ATGAAAGAAGAGGAACCTGA+AGG + chr1_3:28147777-28147796 None:intergenic 40.0%
TTTCACTGTCGTGTATGTGT+CGG - chr1_3:28148003-28148022 Msa0112710:CDS 40.0%
GCCTTGGGATTTAGTAGTTA+AGG - chr1_3:28148092-28148111 Msa0112710:CDS 40.0%
GCCTTAACTACTAAATCCCA+AGG + chr1_3:28148096-28148115 None:intergenic 40.0%
TAGAGAACAGTGAGAAAGAG+AGG - chr1_3:28148149-28148168 Msa0112710:CDS 40.0%
AGAGAACAGTGAGAAAGAGA+GGG - chr1_3:28148150-28148169 Msa0112710:CDS 40.0%
TTATTGCTGAGTGACCACAA+GGG + chr1_3:28148288-28148307 None:intergenic 40.0%
GGTCACTCAGCAATAAGTTA+TGG - chr1_3:28148292-28148311 Msa0112710:CDS 40.0%
! TCACACATTTAAGGCCTGTT+TGG - chr1_3:28148478-28148497 Msa0112710:CDS 40.0%
CAGAAACAGTACAAGAAGCA+AGG - chr1_3:28148736-28148755 Msa0112710:CDS 40.0%
GAAACAGTACAAGAAGCAAG+GGG - chr1_3:28148738-28148757 Msa0112710:CDS 40.0%
TTACAAAGATAGCTGCTTCC+TGG + chr1_3:28148770-28148789 None:intergenic 40.0%
GCCACAATAACCCATATTGA+GGG + chr1_3:28149040-28149059 None:intergenic 40.0%
TGCCACAATAACCCATATTG+AGG + chr1_3:28149041-28149060 None:intergenic 40.0%
ATTGTGGCATGTTCAACTGA+CGG - chr1_3:28149052-28149071 Msa0112710:CDS 40.0%
TCTGTTGTAGCACAATTGGT+TGG - chr1_3:28149276-28149295 Msa0112710:CDS 40.0%
CTGTTGTAGCACAATTGGTT+GGG - chr1_3:28149277-28149296 Msa0112710:CDS 40.0%
TGGTAATCTTCTGGATGAAG+TGG - chr1_3:28149382-28149401 Msa0112710:intron 40.0%
GGTAATCTTCTGGATGAAGT+GGG - chr1_3:28149383-28149402 Msa0112710:intron 40.0%
TTTGACAACACTGTGTGCTT+AGG + chr1_3:28149497-28149516 None:intergenic 40.0%
!!! GGCGTTTTCTGGTTGATTTT+TGG - chr1_3:28149556-28149575 Msa0112710:intron 40.0%
!!! TGATTTTTGGCTTTCTGCCA+TGG - chr1_3:28149569-28149588 Msa0112710:intron 40.0%
ATGTTACCGATGGTAAATGG+CGG + chr1_3:28149596-28149615 None:intergenic 40.0%
CATGCTTACAATGTTACCGA+TGG + chr1_3:28149606-28149625 None:intergenic 40.0%
CTGTGCATGGTGAAATGATA+TGG - chr1_3:28149671-28149690 Msa0112710:intron 40.0%
GTGAATAGCGACGGAAAAAA+AGG + chr1_3:28149805-28149824 None:intergenic 40.0%
! ATTCATCATTGGTTGTGGAG+TGG - chr1_3:28149941-28149960 Msa0112710:intron 40.0%
! GCTTTAAGCATGTGAAAAGG+AGG - chr1_3:28149993-28150012 Msa0112710:intron 40.0%
! CAATAACTAAGGAAGTGTGG+AGG - chr1_3:28150042-28150061 Msa0112710:intron 40.0%
AAGTAATTGCCTAGAGAGGA+AGG + chr1_3:28150089-28150108 None:intergenic 40.0%
TTCCTCTCTAGGCAATTACT+TGG - chr1_3:28150088-28150107 Msa0112710:intron 40.0%
!! TCGACATTCTTCAAGTTGGT+AGG - chr1_3:28150274-28150293 Msa0112710:intron 40.0%
TTGGTAGGTTGCATCATTGA+TGG - chr1_3:28150289-28150308 Msa0112710:intron 40.0%
CACCTAAAACTCTTTGTTGC+TGG + chr1_3:28150369-28150388 None:intergenic 40.0%
GTAAACCAACTCCATCAGAT+AGG + chr1_3:28150411-28150430 None:intergenic 40.0%
! AGTTGGTTTACCTGAACTTG+AGG - chr1_3:28150420-28150439 Msa0112710:intron 40.0%
TAAAGCAGAAGACTTTCACC+AGG - chr1_3:28150449-28150468 Msa0112710:intron 40.0%
! GTATAGGCTTGCTTTATCAG+TGG - chr1_3:28150803-28150822 Msa0112710:CDS 40.0%
! TGAATCTTGATGACACGGAT+TGG - chr1_3:28151057-28151076 Msa0112710:CDS 40.0%
TTTATGTAGCTGTGTCCACT+TGG - chr1_3:28151141-28151160 Msa0112710:CDS 40.0%
ATCAAGTATAACCCACCAAG+TGG + chr1_3:28151159-28151178 None:intergenic 40.0%
!! ACTTGGTGGGTTATACTTGA+TGG - chr1_3:28151158-28151177 Msa0112710:CDS 40.0%
AGATCTGTAGATACAGCTGT+TGG - chr1_3:28151360-28151379 Msa0112710:intron 40.0%
GATCTGTAGATACAGCTGTT+GGG - chr1_3:28151361-28151380 Msa0112710:intron 40.0%
ATCTGTAGATACAGCTGTTG+GGG - chr1_3:28151362-28151381 Msa0112710:intron 40.0%
! TATCCCATTTTCTACTGCTG+GGG + chr1_3:28151463-28151482 None:intergenic 40.0%
CATGTTCTGTTGAAACAGGA+TGG + chr1_3:28151491-28151510 None:intergenic 40.0%
! TAAGCTTTTGCTAGTTGCAC+AGG + chr1_3:28151768-28151787 None:intergenic 40.0%
TAACATTGATGGGGAAACCT+TGG + chr1_3:28151808-28151827 None:intergenic 40.0%
TTAAGCATGCAAAGTCCTAC+TGG - chr1_3:28151825-28151844 Msa0112710:CDS 40.0%
TAAGCATGCAAAGTCCTACT+GGG - chr1_3:28151826-28151845 Msa0112710:CDS 40.0%
!! GGGATTTTTGAGCAAAGTGA+TGG + chr1_3:28151875-28151894 None:intergenic 40.0%
AAGGGTTATTAACCATGCCA+GGG - chr1_3:28151914-28151933 Msa0112710:CDS 40.0%
! CATTTTCATAAACCCTGGCA+TGG + chr1_3:28151929-28151948 None:intergenic 40.0%
CATGCCAGGGTTTATGAAAA+TGG - chr1_3:28151927-28151946 Msa0112710:CDS 40.0%
!! GTGCTTTCTGGAACTAAACA+AGG - chr1_3:28152183-28152202 Msa0112710:CDS 40.0%
!! GCTTTCTGGAACTAAACAAG+GGG - chr1_3:28152185-28152204 Msa0112710:CDS 40.0%
! GGCAATGATATAGGGTCTTT+TGG - chr1_3:28152321-28152340 Msa0112710:CDS 40.0%
!! ATAGAAGACTAGCCTTGTGA+CGG + chr1_3:28152362-28152381 None:intergenic 40.0%
!! GCTAGTCTTCTATCCTCAAA+AGG - chr1_3:28152369-28152388 Msa0112710:CDS 40.0%
AGATACAGGGATGTCTGAAT+TGG + chr1_3:28152406-28152425 None:intergenic 40.0%
CATGCAGAAGCCTATTCTAA+CGG - chr1_3:28152470-28152489 Msa0112710:CDS 40.0%
ATGCAGAAGCCTATTCTAAC+GGG - chr1_3:28152471-28152490 Msa0112710:CDS 40.0%
TTTCCACTGACAATTTGGCA+CGG + chr1_3:28152512-28152531 None:intergenic 40.0%
! GCCATCTCACTAGATTTTGA+TGG + chr1_3:28152573-28152592 None:intergenic 40.0%
!! TCTGCAGCAAGTTGATAAGA+TGG - chr1_3:28152602-28152621 Msa0112710:CDS 40.0%
ATGGAAGATGACAACTTCGA+TGG + chr1_3:28152684-28152703 None:intergenic 40.0%
TTGTCATCTTCCATGTTACG+AGG - chr1_3:28152690-28152709 Msa0112710:intron 40.0%
GTTGACATCAAAGGTAAGCA+AGG - chr1_3:28152821-28152840 Msa0112710:CDS 40.0%
AAGGTAAGCAAGGTGGAAAA+TGG - chr1_3:28152831-28152850 Msa0112710:CDS 40.0%
AAGTCTGTTTCACCGAATGA+TGG - chr1_3:28152858-28152877 Msa0112710:CDS 40.0%
GGATTAATTCCTGCAGTAAC+TGG - chr1_3:28152879-28152898 Msa0112710:CDS 40.0%
!!! CAGAATGCCCTCTTTTTTGA+GGG + chr1_3:28152972-28152991 None:intergenic 40.0%
!!! ACAGAATGCCCTCTTTTTTG+AGG + chr1_3:28152973-28152992 None:intergenic 40.0%
ATTCTGTATGAGTGCACATG+AGG - chr1_3:28152986-28153005 Msa0112710:CDS 40.0%
AGATCTGTCATTGCTCTTCA+CGG - chr1_3:28153190-28153209 Msa0112710:intron 40.0%
CAACTCCAGATAATCCTTTG+AGG + chr1_3:28153473-28153492 None:intergenic 40.0%
! CTCAAAGGATTATCTGGAGT+TGG - chr1_3:28153471-28153490 Msa0112710:intron 40.0%
! ACAGGGGATGCATTTTCATT+AGG + chr1_3:28153523-28153542 None:intergenic 40.0%
!! TACAGGTTTTTCGATGGCAA+AGG + chr1_3:28153572-28153591 None:intergenic 40.0%
GGTAAACTTAGGAATGCTGA+TGG - chr1_3:28153649-28153668 Msa0112710:intron 40.0%
TCTACAGCTAAGCCAAATAC+GGG - chr1_3:28153733-28153752 Msa0112710:intron 40.0%
GCTTTAACTGAACCCGTATT+TGG + chr1_3:28153748-28153767 None:intergenic 40.0%
!! TCCATTTGGTGTAGACTTGT+CGG + chr1_3:28153794-28153813 None:intergenic 40.0%
TAATCCTCCCCTGTTTAACT+TGG - chr1_3:28153822-28153841 Msa0112710:intron 40.0%
! AATCCTCCCCTGTTTAACTT+GGG - chr1_3:28153823-28153842 Msa0112710:intron 40.0%
! CTTTTCCCCAAGTTAAACAG+GGG + chr1_3:28153832-28153851 None:intergenic 40.0%
TCGAAAGAGTCCACTAAAAC+AGG - chr1_3:28153928-28153947 Msa0112710:intron 40.0%
TCCACTAAAACAGGTCCAAT+TGG - chr1_3:28153937-28153956 Msa0112710:intron 40.0%
!! ACCAATTGGACCTGTTTTAG+TGG + chr1_3:28153941-28153960 None:intergenic 40.0%
GAGAAAGTAAATGGCACTTG+TGG + chr1_3:28154048-28154067 None:intergenic 40.0%
TCTGGACCAGTAATCTCATT+GGG - chr1_3:28154203-28154222 Msa0112710:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr1_3:28154285-28154304 None:intergenic 40.0%
TACCTATTCAATGTGGGACT+TGG - chr1_3:28154355-28154374 Msa0112710:CDS 40.0%
ACCTATTCAATGTGGGACTT+GGG - chr1_3:28154356-28154375 Msa0112710:CDS 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr1_3:28154449-28154468 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr1_3:28154450-28154469 None:intergenic 40.0%
!! TGGGAAAAACCGGTTTTGTA+AGG + chr1_3:28154502-28154521 None:intergenic 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr1_3:28154449-28154468 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr1_3:28154450-28154469 None:intergenic 40.0%
! CAAAACCGGTTCATAAGGTA+AGG - chr1_3:28154638-28154657 Msa0112710:intron 40.0%
! AAGTTTGCTCTAGCAAACAC+AGG + chr1_3:28154743-28154762 None:intergenic 40.0%
CACATTCTGAGTCTACTCAT+TGG - chr1_3:28154843-28154862 Msa0112710:intron 40.0%
TACAGTTCATTTACTGCTGC+TGG - chr1_3:28155433-28155452 Msa0112710:intron 40.0%
ACGACGAATGTATTTACCTC+TGG - chr1_3:28155580-28155599 Msa0112710:intron 40.0%
! TTGACTTGAAATGTTGCCAG+AGG + chr1_3:28155599-28155618 None:intergenic 40.0%
TGTAACCACAGGTAGAAATG+GGG + chr1_3:28155659-28155678 None:intergenic 40.0%
! TGCTAGTACTGAAAGTTGCA+GGG + chr1_3:28155750-28155769 None:intergenic 40.0%
! ATGCTAGTACTGAAAGTTGC+AGG + chr1_3:28155751-28155770 None:intergenic 40.0%
GGGTGGATCCAAATTTGAAA+AGG + chr1_3:28155858-28155877 None:intergenic 40.0%
! ACTTATTGATGGTAAAGGGG+TGG + chr1_3:28155875-28155894 None:intergenic 40.0%
AAATAGTCAGTCTCAGACTC+AGG - chr1_3:28155993-28156012 Msa0112710:CDS 40.0%
AATAGTCAGTCTCAGACTCA+GGG - chr1_3:28155994-28156013 Msa0112710:CDS 40.0%
TCTTTGGCAGCACTATAAGT+GGG - chr1_3:28156022-28156041 Msa0112710:CDS 40.0%
TTGTTGCAGGACTTGAAGAA+GGG + chr1_3:28156194-28156213 None:intergenic 40.0%
TTTGTTGCAGGACTTGAAGA+AGG + chr1_3:28156195-28156214 None:intergenic 40.0%
ATTATTGGAGCTAACAGGGA+TGG + chr1_3:28156274-28156293 None:intergenic 40.0%
ATCCCTGTTAGCTCCAATAA+TGG - chr1_3:28156273-28156292 Msa0112710:intron 40.0%
TGCCATTATTGGAGCTAACA+GGG + chr1_3:28156278-28156297 None:intergenic 40.0%
GGCACAAGTTCTACATTGTT+TGG - chr1_3:28156294-28156313 Msa0112710:intron 40.0%
GTGGATGATCCAAATACCAT+CGG + chr1_3:28156444-28156463 None:intergenic 40.0%
ATGGTATTTGGATCATCCAC+AGG - chr1_3:28156444-28156463 Msa0112710:intron 40.0%
GCTGAAGTGAATGAGAATTG+AGG + chr1_3:28156480-28156499 None:intergenic 40.0%
GGACTAGGATTTCCAAAAGT+AGG + chr1_3:28156525-28156544 None:intergenic 40.0%
AGCTGAACCAAATGGAAAGA+CGG + chr1_3:28156547-28156566 None:intergenic 40.0%
TAATGATCAGACAAGCATGG+AGG - chr1_3:28156575-28156594 Msa0112710:intron 40.0%
TTGACCAAATACTGGAGTGA+CGG + chr1_3:28156637-28156656 None:intergenic 40.0%
ACAGGTTGTTGACCAAATAC+TGG + chr1_3:28156645-28156664 None:intergenic 40.0%
CACAGAATCCTTTCCAGTTT+GGG - chr1_3:28156712-28156731 Msa0112710:intron 40.0%
ACAGAATCCTTTCCAGTTTG+GGG - chr1_3:28156713-28156732 Msa0112710:intron 40.0%
! GGCAGTCTAGAATTTAATGC+CGG - chr1_3:28156783-28156802 Msa0112710:intron 40.0%
! AGTCTAGAATTTAATGCCGG+AGG - chr1_3:28156786-28156805 Msa0112710:intron 40.0%
! GTCTAGAATTTAATGCCGGA+GGG - chr1_3:28156787-28156806 Msa0112710:intron 40.0%
CTTGTATCATAGCCCGAATT+AGG - chr1_3:28157228-28157247 Msa0112710:CDS 40.0%
! AGCCTGTCGATTATTCTTGT+AGG - chr1_3:28157303-28157322 Msa0112710:five_prime_UTR 40.0%
! GCCTGTCGATTATTCTTGTA+GGG - chr1_3:28157304-28157323 Msa0112710:five_prime_UTR 40.0%
GCTTGTGCTAGAATAAATGG+AGG + chr1_3:28157330-28157349 None:intergenic 40.0%
TCTAGCACAAGCTTTCTGTT+TGG - chr1_3:28157338-28157357 Msa0112710:five_prime_UTR 40.0%
GAAAACGGTTACGAAAACGG+AGG - chr1_3:28147549-28147568 Msa0112710:three_prime_UTR 45.0%
! CGTCGTTTGAGTTCTCTTGA+AGG + chr1_3:28147604-28147623 None:intergenic 45.0%
TTAGGGTTTCTCAGAGCTGT+CGG + chr1_3:28147642-28147661 None:intergenic 45.0%
ACCCTAACAGAAACAACGGT+TGG - chr1_3:28147655-28147674 Msa0112710:three_prime_UTR 45.0%
!! GCCAACCGTTGTTTCTGTTA+GGG + chr1_3:28147659-28147678 None:intergenic 45.0%
!! AGCCAACCGTTGTTTCTGTT+AGG + chr1_3:28147660-28147679 None:intergenic 45.0%
TAAGTGATGAACCTCTGTGC+GGG + chr1_3:28147699-28147718 None:intergenic 45.0%
GTAAGTGATGAACCTCTGTG+CGG + chr1_3:28147700-28147719 None:intergenic 45.0%
AAAGAAGAGGAACCTGAAGG+TGG + chr1_3:28147774-28147793 None:intergenic 45.0%
CTTATTGCTGAGTGACCACA+AGG + chr1_3:28148289-28148308 None:intergenic 45.0%
ATGCGGTTATTGAGCTGAAC+TGG - chr1_3:28148344-28148363 Msa0112710:CDS 45.0%
! GCCCTCAATATGGGTTATTG+TGG - chr1_3:28149036-28149055 Msa0112710:CDS 45.0%
GTCCAAGTAATTGCCTAGAG+AGG + chr1_3:28150093-28150112 None:intergenic 45.0%
TGATCAACGAGAACTTGGAC+TGG - chr1_3:28150160-28150179 Msa0112710:intron 45.0%
! TGGATGGCTCTGTACATTGA+AGG + chr1_3:28150200-28150219 None:intergenic 45.0%
GTGACTAATTGGAGCATGGA+TGG + chr1_3:28150216-28150235 None:intergenic 45.0%
CACAGTGACTAATTGGAGCA+TGG + chr1_3:28150220-28150239 None:intergenic 45.0%
! TTTGTTGTACGAGGAGGAAC+AGG - chr1_3:28150324-28150343 Msa0112710:intron 45.0%
! GGCCAGCAACAAAGAGTTTT+AGG - chr1_3:28150364-28150383 Msa0112710:intron 45.0%
AGACTTTCACCAGGTATGCT+TGG - chr1_3:28150458-28150477 Msa0112710:intron 45.0%
CACTTCATACCAAGCATACC+TGG + chr1_3:28150470-28150489 None:intergenic 45.0%
ACAAACACGTTAGGCGTATC+AGG - chr1_3:28150621-28150640 Msa0112710:intron 45.0%
CTCCCATGAAAGACCAAGTT+CGG - chr1_3:28150754-28150773 Msa0112710:CDS 45.0%
! CACCGAACTTGGTCTTTCAT+GGG + chr1_3:28150759-28150778 None:intergenic 45.0%
GACACAGCACAATACAAACC+AGG + chr1_3:28150947-28150966 None:intergenic 45.0%
ATACAGCTGTTGGGGAAGAA+GGG - chr1_3:28151370-28151389 Msa0112710:intron 45.0%
! TACGGGGATACTCTTCCTTT+TGG + chr1_3:28151440-28151459 None:intergenic 45.0%
! ATTTTCTACTGCTGGGGTAC+GGG + chr1_3:28151457-28151476 None:intergenic 45.0%
! CATTTTCTACTGCTGGGGTA+CGG + chr1_3:28151458-28151477 None:intergenic 45.0%
GTACCCCAGCAGTAGAAAAT+GGG - chr1_3:28151457-28151476 Msa0112710:intron 45.0%
GTGGCATGTTCTGTTGAAAC+AGG + chr1_3:28151495-28151514 None:intergenic 45.0%
CAAAAGCTTACATTGGGAGC+AGG - chr1_3:28151778-28151797 Msa0112710:intron 45.0%
ATTGATGGGGAAACCTTGGA+AGG + chr1_3:28151804-28151823 None:intergenic 45.0%
AAGCATGCAAAGTCCTACTG+GGG - chr1_3:28151827-28151846 Msa0112710:CDS 45.0%
AAAGTTGAATCCTCCCCAGT+AGG + chr1_3:28151843-28151862 None:intergenic 45.0%
CTGGCATGGTTAATAACCCT+TGG + chr1_3:28151915-28151934 None:intergenic 45.0%
CAAGGGTTATTAACCATGCC+AGG - chr1_3:28151913-28151932 Msa0112710:CDS 45.0%
! TTTTTGACCCCAAGATCTCG+TGG - chr1_3:28151951-28151970 Msa0112710:CDS 45.0%
GTGGAGTCTGGATAAACTCT+AGG + chr1_3:28152014-28152033 None:intergenic 45.0%
TAAATGGCAAACCTTGGGTG+TGG + chr1_3:28152033-28152052 None:intergenic 45.0%
TCTCTAACTTTACAGGGTGC+TGG - chr1_3:28152105-28152124 Msa0112710:CDS 45.0%
! CTCTAACTTTACAGGGTGCT+GGG - chr1_3:28152106-28152125 Msa0112710:CDS 45.0%
!! TCTAACTTTACAGGGTGCTG+GGG - chr1_3:28152107-28152126 Msa0112710:CDS 45.0%
GCATGCTGAGATGAAGATGA+CGG + chr1_3:28152150-28152169 None:intergenic 45.0%
!! CGTTTTAATCCCTGCAAGGT+GGG + chr1_3:28152285-28152304 None:intergenic 45.0%
!! TCTGCGTTTTAATCCCTGCA+AGG + chr1_3:28152289-28152308 None:intergenic 45.0%
! GGTCAAGGTCAATCCTTTTG+AGG + chr1_3:28152385-28152404 None:intergenic 45.0%
AGGGATGTCTGAATTGGTCA+AGG + chr1_3:28152400-28152419 None:intergenic 45.0%
CGTTAGAATAGGCTTCTGCA+TGG + chr1_3:28152472-28152491 None:intergenic 45.0%
AAAGGAGGAAAGCTGCTACT+AGG + chr1_3:28152549-28152568 None:intergenic 45.0%
AAGAGCTTGTCCTCGTAACA+TGG + chr1_3:28152703-28152722 None:intergenic 45.0%
GACATCAAAGGTAAGCAAGG+TGG - chr1_3:28152824-28152843 Msa0112710:CDS 45.0%
! CATTCGGTGAAACAGACTTC+AGG + chr1_3:28152857-28152876 None:intergenic 45.0%
!! ATGACTTGGTTTCTTGGGAC+AGG + chr1_3:28152915-28152934 None:intergenic 45.0%
CAACCCTCCCTCAAAAAAGA+GGG - chr1_3:28152962-28152981 Msa0112710:CDS 45.0%
!!! ATGCCCTCTTTTTTGAGGGA+GGG + chr1_3:28152968-28152987 None:intergenic 45.0%
!!! AATGCCCTCTTTTTTGAGGG+AGG + chr1_3:28152969-28152988 None:intergenic 45.0%
CTCTCCCTCAAAGGATTATC+TGG - chr1_3:28153465-28153484 Msa0112710:intron 45.0%
TGCCATCGAAAAACCTGTAC+AGG - chr1_3:28153573-28153592 Msa0112710:intron 45.0%
!! CTCCTGTACAGGTTTTTCGA+TGG + chr1_3:28153578-28153597 None:intergenic 45.0%
TCCGACAAGTCTACACCAAA+TGG - chr1_3:28153790-28153809 Msa0112710:intron 45.0%
! GGATTAGCAGCTGATCCATT+TGG + chr1_3:28153808-28153827 None:intergenic 45.0%
!! ATCCTCCCCTGTTTAACTTG+GGG - chr1_3:28153824-28153843 Msa0112710:intron 45.0%
TCGAAATCAACAGAGCTGTC+AGG - chr1_3:28153892-28153911 Msa0112710:intron 45.0%
! GCAGCTTTGTCCAAACCAAT+TGG + chr1_3:28153955-28153974 None:intergenic 45.0%
! ACTTTCTCTTCATCGGTTGG+TGG - chr1_3:28154060-28154079 Msa0112710:intron 45.0%
CTCTGGACCAGTAATCTCAT+TGG - chr1_3:28154202-28154221 Msa0112710:intron 45.0%
!! CCTTACGAACCGGTTTTGTA+AGG + chr1_3:28154295-28154314 None:intergenic 45.0%
!! CCTTACAAAACCGGTTCGTA+AGG - chr1_3:28154292-28154311 Msa0112710:intron 45.0%
!! AAAACCGGTTCGTAAGGTGA+GGG - chr1_3:28154298-28154317 Msa0112710:intron 45.0%
ACCCAAGTCCCACATTGAAT+AGG + chr1_3:28154360-28154379 None:intergenic 45.0%
AAAAGAGAGCTGGGTGTGAT+GGG + chr1_3:28154398-28154417 None:intergenic 45.0%
AAAAAGAGAGCTGGGTGTGA+TGG + chr1_3:28154399-28154418 None:intergenic 45.0%
! ATCACACCCAGCTCTCTTTT+TGG - chr1_3:28154398-28154417 Msa0112710:CDS 45.0%
! TCACACCCAGCTCTCTTTTT+GGG - chr1_3:28154399-28154418 Msa0112710:CDS 45.0%
!! TTTGGGCTTGGTGTGTGAAT+AGG - chr1_3:28154416-28154435 Msa0112710:CDS 45.0%
TTGGTGTGTGAATAGGTAGG+TGG - chr1_3:28154423-28154442 Msa0112710:CDS 45.0%
AAAAGAGAGCTGGGTGTGAT+GGG + chr1_3:28154398-28154417 None:intergenic 45.0%
AAAAAGAGAGCTGGGTGTGA+TGG + chr1_3:28154399-28154418 None:intergenic 45.0%
! ATCACACCCAGCTCTCTTTT+TGG - chr1_3:28154398-28154417 Msa0112710:CDS 45.0%
! TCACACCCAGCTCTCTTTTT+GGG - chr1_3:28154399-28154418 Msa0112710:CDS 45.0%
!! TTTGGGCTTGGTGTGTGAAT+AGG - chr1_3:28154416-28154435 Msa0112710:CDS 45.0%
TTGGTGTGTGAATAGGTAGG+TGG - chr1_3:28154423-28154442 Msa0112710:CDS 45.0%
GCACTCCTTACCTTATGAAC+CGG + chr1_3:28154646-28154665 None:intergenic 45.0%
! CGATTCAGGAACTTTTGGCA+CGG + chr1_3:28155470-28155489 None:intergenic 45.0%
CGTGCCAAAAGTTCCTGAAT+CGG - chr1_3:28155468-28155487 Msa0112710:intron 45.0%
GCATCAGCATTATCCGATTC+AGG + chr1_3:28155484-28155503 None:intergenic 45.0%
! TGCAGACGGTTCTGATGATT+GGG + chr1_3:28155536-28155555 None:intergenic 45.0%
! GCTAGTACTGAAAGTTGCAG+GGG + chr1_3:28155749-28155768 None:intergenic 45.0%
TCTGAGCCAGAAGATGATAC+AGG + chr1_3:28155901-28155920 None:intergenic 45.0%
TCAGAACCAGTGGAAACCAA+GGG - chr1_3:28155916-28155935 Msa0112710:intron 45.0%
GTCTTTGGCAGCACTATAAG+TGG - chr1_3:28156021-28156040 Msa0112710:CDS 45.0%
! ACTAGGTGCTAGAGTACCAA+CGG + chr1_3:28156052-28156071 None:intergenic 45.0%
GCAAAACCACTAGTAGCACT+AGG + chr1_3:28156069-28156088 None:intergenic 45.0%
GAAGATGAACCAAATGCCAC+AGG + chr1_3:28156111-28156130 None:intergenic 45.0%
TCTTCATCATCCCCGTTGTT+TGG - chr1_3:28156126-28156145 Msa0112710:intron 45.0%
CTTCATCATCCCCGTTGTTT+GGG - chr1_3:28156127-28156146 Msa0112710:intron 45.0%
TGTTGCAGGACTTGAAGAAG+GGG + chr1_3:28156193-28156212 None:intergenic 45.0%
TTCAACTCTGGTACAGCTTC+TGG - chr1_3:28156219-28156238 Msa0112710:intron 45.0%
! GTGCCATTATTGGAGCTAAC+AGG + chr1_3:28156279-28156298 None:intergenic 45.0%
GTTCTACATTGTTTGGCGCT+TGG - chr1_3:28156301-28156320 Msa0112710:intron 45.0%
! CCGAAAGGAGAAGATTTGCT+GGG + chr1_3:28156330-28156349 None:intergenic 45.0%
CCCAGCAAATCTTCTCCTTT+CGG - chr1_3:28156327-28156346 Msa0112710:intron 45.0%
ACCGAAAGGAGAAGATTTGC+TGG + chr1_3:28156331-28156350 None:intergenic 45.0%
!! GAACTAAAGGGAGTACCGAA+AGG + chr1_3:28156345-28156364 None:intergenic 45.0%
TCTACCTCTGAGTTCTCCTT+TGG - chr1_3:28156387-28156406 Msa0112710:intron 45.0%
ACCAGTTCTCCGATGGTATT+TGG - chr1_3:28156432-28156451 Msa0112710:intron 45.0%
TCCAAATACCATCGGAGAAC+TGG + chr1_3:28156436-28156455 None:intergenic 45.0%
GCTGAACCAAATGGAAAGAC+GGG + chr1_3:28156546-28156565 None:intergenic 45.0%
TGACCAAATACTGGAGTGAC+GGG + chr1_3:28156636-28156655 None:intergenic 45.0%
CCAAACTGGAAAGGATTCTG+TGG + chr1_3:28156714-28156733 None:intergenic 45.0%
CCACAGAATCCTTTCCAGTT+TGG - chr1_3:28156711-28156730 Msa0112710:intron 45.0%
CAGAATCCTTTCCAGTTTGG+GGG - chr1_3:28156714-28156733 Msa0112710:intron 45.0%
TATTCTGTTGACCCCCAAAC+TGG + chr1_3:28156728-28156747 None:intergenic 45.0%
ATCATAGCCCGAATTAGGCA+TGG - chr1_3:28157233-28157252 Msa0112710:CDS 45.0%
GCCCTACAAGAATAATCGAC+AGG + chr1_3:28157308-28157327 None:intergenic 45.0%
!!! TTTTCAAAAAAATAAATATA+GGG + chr1_3:28149739-28149758 None:intergenic 5.0%
!!! ATTTTCAAAAAAATAAATAT+AGG + chr1_3:28149740-28149759 None:intergenic 5.0%
!!! ATATTTATTTTTTTGAAAAT+AGG - chr1_3:28149740-28149759 Msa0112710:intron 5.0%
AACGGTTACGAAAACGGAGG+TGG - chr1_3:28147552-28147571 Msa0112710:three_prime_UTR 50.0%
GAAAACGGAGGTGGAGGATA+CGG - chr1_3:28147561-28147580 Msa0112710:three_prime_UTR 50.0%
AACTCATTGATCCCGCACAG+AGG - chr1_3:28147685-28147704 Msa0112710:three_prime_UTR 50.0%
! AAGGCGTTTACGGAAAACGG+AGG + chr1_3:28147742-28147761 None:intergenic 50.0%
!! GCGGTGGATTAAGGCGTTTA+CGG + chr1_3:28147752-28147771 None:intergenic 50.0%
AACCAGAAAACGCCATGACG+TGG + chr1_3:28149550-28149569 None:intergenic 50.0%
CATGGTCCGCCATTTACCAT+CGG - chr1_3:28149587-28149606 Msa0112710:intron 50.0%
! TTTTGCTGGCCGTCAAGATC+CGG - chr1_3:28149883-28149902 Msa0112710:intron 50.0%
TACCAGATGCCGGATCTTGA+CGG + chr1_3:28149895-28149914 None:intergenic 50.0%
CACCTGTATCCTTCCTCTCT+AGG - chr1_3:28150077-28150096 Msa0112710:intron 50.0%
TGCCTAGAGAGGAAGGATAC+AGG + chr1_3:28150082-28150101 None:intergenic 50.0%
CAGGCTGCAAATGAGTCATC+TGG - chr1_3:28150343-28150362 Msa0112710:intron 50.0%
TGCTTGGTATGAAGTGCGTG+TGG - chr1_3:28150474-28150493 Msa0112710:intron 50.0%
CGTTAGGCGTATCAGGTTAG+AGG - chr1_3:28150628-28150647 Msa0112710:intron 50.0%
! ACTTGGTCTTTCATGGGAGG+TGG + chr1_3:28150753-28150772 None:intergenic 50.0%
! CGAACTTGGTCTTTCATGGG+AGG + chr1_3:28150756-28150775 None:intergenic 50.0%
! GCACCGAACTTGGTCTTTCA+TGG + chr1_3:28150760-28150779 None:intergenic 50.0%
AGAGGAGGTTTCTGTTGGGT+TGG - chr1_3:28151025-28151044 Msa0112710:CDS 50.0%
ATGTAGCTGTGTCCACTTGG+TGG - chr1_3:28151144-28151163 Msa0112710:CDS 50.0%
TGTAGCTGTGTCCACTTGGT+GGG - chr1_3:28151145-28151164 Msa0112710:CDS 50.0%
GATACAGCTGTTGGGGAAGA+AGG - chr1_3:28151369-28151388 Msa0112710:intron 50.0%
! TTTTCTACTGCTGGGGTACG+GGG + chr1_3:28151456-28151475 None:intergenic 50.0%
CGTACCCCAGCAGTAGAAAA+TGG - chr1_3:28151456-28151475 Msa0112710:intron 50.0%
TGATCTGCCACGAGATCTTG+GGG + chr1_3:28151961-28151980 None:intergenic 50.0%
CTGATCTGCCACGAGATCTT+GGG + chr1_3:28151962-28151981 None:intergenic 50.0%
ACTGATCTGCCACGAGATCT+TGG + chr1_3:28151963-28151982 None:intergenic 50.0%
TTATCCAGACTCCACACCCA+AGG - chr1_3:28152019-28152038 Msa0112710:CDS 50.0%
!! CTGGGGTTGGTGTTGAAGAT+GGG - chr1_3:28152124-28152143 Msa0112710:CDS 50.0%
TCTCAGCATGCACTCGATCA+TGG - chr1_3:28152159-28152178 Msa0112710:CDS 50.0%
CTCGATCATGGTGTGCTTTC+TGG - chr1_3:28152171-28152190 Msa0112710:CDS 50.0%
TACTGATACACCCACCTTGC+AGG - chr1_3:28152272-28152291 Msa0112710:CDS 50.0%
ACTGATACACCCACCTTGCA+GGG - chr1_3:28152273-28152292 Msa0112710:CDS 50.0%
!! GCGTTTTAATCCCTGCAAGG+TGG + chr1_3:28152286-28152305 None:intergenic 50.0%
!! TTGTGACGGATTCGGCGTAT+AGG + chr1_3:28152348-28152367 None:intergenic 50.0%
TATACGCCGAATCCGTCACA+AGG - chr1_3:28152347-28152366 Msa0112710:CDS 50.0%
!! GACTAGCCTTGTGACGGATT+CGG + chr1_3:28152356-28152375 None:intergenic 50.0%
TAGCCGTGCCAAATTGTCAG+TGG - chr1_3:28152506-28152525 Msa0112710:intron 50.0%
AGGAAAGCTGCTACTAGGCA+TGG + chr1_3:28152544-28152563 None:intergenic 50.0%
AGGACAAGCTCTTCGAAGCA+TGG - chr1_3:28152710-28152729 Msa0112710:intron 50.0%
GAGTCTGAACCAGTTACTGC+AGG + chr1_3:28152891-28152910 None:intergenic 50.0%
!!! CCTCTTTTTTGAGGGAGGGT+TGG + chr1_3:28152964-28152983 None:intergenic 50.0%
CCAACCCTCCCTCAAAAAAG+AGG - chr1_3:28152961-28152980 Msa0112710:CDS 50.0%
ATCCCCTGTCTCTACTCATG+CGG - chr1_3:28153534-28153553 Msa0112710:intron 50.0%
TTCCCCAAGTTAAACAGGGG+AGG + chr1_3:28153829-28153848 None:intergenic 50.0%
GGACAAAGCTGCACCATCAA+AGG - chr1_3:28153963-28153982 Msa0112710:intron 50.0%
!! CAAAACCGGTTCGTAAGGTG+AGG - chr1_3:28154297-28154316 Msa0112710:intron 50.0%
!! AAACCGGTTCGTAAGGTGAG+GGG - chr1_3:28154299-28154318 Msa0112710:intron 50.0%
AAAGAGAGCTGGGTGTGATG+GGG + chr1_3:28154397-28154416 None:intergenic 50.0%
CCAAGCCCAAAAAGAGAGCT+GGG + chr1_3:28154407-28154426 None:intergenic 50.0%
ACCAAGCCCAAAAAGAGAGC+TGG + chr1_3:28154408-28154427 None:intergenic 50.0%
!! GGCTTGGTGTGTGAATAGGT+AGG - chr1_3:28154420-28154439 Msa0112710:CDS 50.0%
! GGGGGTGTATTGGGAAAAAC+CGG + chr1_3:28154378-28154397 None:intergenic 50.0%
AAAGAGAGCTGGGTGTGATG+GGG + chr1_3:28154397-28154416 None:intergenic 50.0%
CCAAGCCCAAAAAGAGAGCT+GGG + chr1_3:28154407-28154426 None:intergenic 50.0%
ACCAAGCCCAAAAAGAGAGC+TGG + chr1_3:28154408-28154427 None:intergenic 50.0%
!! GGCTTGGTGTGTGAATAGGT+AGG - chr1_3:28154420-28154439 Msa0112710:CDS 50.0%
! ACGGTTCTGATGATTGGGCA+GGG + chr1_3:28155531-28155550 None:intergenic 50.0%
! CTGCAGACGGTTCTGATGAT+TGG + chr1_3:28155537-28155556 None:intergenic 50.0%
TTCCTCCCCATTTCTACCTG+TGG - chr1_3:28155651-28155670 Msa0112710:intron 50.0%
AACCACAGGTAGAAATGGGG+AGG + chr1_3:28155656-28155675 None:intergenic 50.0%
! GCTGCTGCTACTTGTTGCAA+GGG + chr1_3:28155719-28155738 None:intergenic 50.0%
!! TGAAAGTTGCAGGGGCACTA+AGG + chr1_3:28155741-28155760 None:intergenic 50.0%
AGACGAAGACGATGTCACTG+AGG + chr1_3:28155824-28155843 None:intergenic 50.0%
!! ATCTTCTGGCTCAGAACCAG+TGG - chr1_3:28155906-28155925 Msa0112710:intron 50.0%
CTCAGAACCAGTGGAAACCA+AGG - chr1_3:28155915-28155934 Msa0112710:intron 50.0%
CAGACTCAGGGTTCTGTCTT+TGG - chr1_3:28156006-28156025 Msa0112710:CDS 50.0%
ACTATAAGTGGGTCCACCGT+TGG - chr1_3:28156033-28156052 Msa0112710:intron 50.0%
! CTAGCACCTAGTGCTACTAG+TGG - chr1_3:28156060-28156079 Msa0112710:intron 50.0%
TTCAACACAGAGTCAGCCTG+TGG - chr1_3:28156092-28156111 Msa0112710:intron 50.0%
TTCCCAGTCTGCCCAAACAA+CGG + chr1_3:28156141-28156160 None:intergenic 50.0%
TGCTCCAAAGGAGAACTCAG+AGG + chr1_3:28156394-28156413 None:intergenic 50.0%
TACCATCGGAGAACTGGTAG+AGG + chr1_3:28156430-28156449 None:intergenic 50.0%
! ACCAATGCGCAGCCTACTTT+TGG - chr1_3:28156510-28156529 Msa0112710:intron 50.0%
TCCAAAAGTAGGCTGCGCAT+TGG + chr1_3:28156514-28156533 None:intergenic 50.0%
CCAAATGGAAAGACGGGACT+AGG + chr1_3:28156540-28156559 None:intergenic 50.0%
CCTAGTCCCGTCTTTCCATT+TGG - chr1_3:28156537-28156556 Msa0112710:intron 50.0%
GACAAGCATGGAGGACAGTA+TGG - chr1_3:28156584-28156603 Msa0112710:intron 50.0%
TGTTGACCCCCAAACTGGAA+AGG + chr1_3:28156723-28156742 None:intergenic 50.0%
CCAGAAGCCTGAAATGGAGA+TGG + chr1_3:28156765-28156784 None:intergenic 50.0%
CCATCTCCATTTCAGGCTTC+TGG - chr1_3:28156762-28156781 Msa0112710:intron 50.0%
AGACTGCCAGAAGCCTGAAA+TGG + chr1_3:28156771-28156790 None:intergenic 50.0%
!! ACTGGTGGTGTTGACAAGTC+TGG - chr1_3:28156825-28156844 Msa0112710:intron 50.0%
GGTTACGAAAACGGAGGTGG+AGG - chr1_3:28147555-28147574 Msa0112710:three_prime_UTR 55.0%
!! CTGAAGGTGGCGGTGGATTA+AGG + chr1_3:28147761-28147780 None:intergenic 55.0%
CTTAATCCACCGCCACCTTC+AGG - chr1_3:28147759-28147778 Msa0112710:three_prime_UTR 55.0%
GAAGAGGAACCTGAAGGTGG+CGG + chr1_3:28147771-28147790 None:intergenic 55.0%
! AGCCACGTCATGGCGTTTTC+TGG - chr1_3:28149545-28149564 Msa0112710:intron 55.0%
!! CGATGGTAAATGGCGGACCA+TGG + chr1_3:28149589-28149608 None:intergenic 55.0%
! ATCACAGGCAGCACCGAACT+TGG + chr1_3:28150770-28150789 None:intergenic 55.0%
CATGCAAAGTCCTACTGGGG+AGG - chr1_3:28151830-28151849 Msa0112710:CDS 55.0%
CAAACCTTGGGTGTGGAGTC+TGG + chr1_3:28152026-28152045 None:intergenic 55.0%
!! ACTTTACAGGGTGCTGGGGT+TGG - chr1_3:28152111-28152130 Msa0112710:CDS 55.0%
!! GCTGGGGTTGGTGTTGAAGA+TGG - chr1_3:28152123-28152142 Msa0112710:CDS 55.0%
GGCTTCTGCATGGAAGACGA+TGG + chr1_3:28152462-28152481 None:intergenic 55.0%
! TGTGGCAGCCTTAGTACCGA+TGG + chr1_3:28152645-28152664 None:intergenic 55.0%
AGCCGCATGAGTAGAGACAG+GGG + chr1_3:28153539-28153558 None:intergenic 55.0%
CAGCCGCATGAGTAGAGACA+GGG + chr1_3:28153540-28153559 None:intergenic 55.0%
TCAGCCGCATGAGTAGAGAC+AGG + chr1_3:28153541-28153560 None:intergenic 55.0%
GACACTGCAGATGAACCTGG+TGG + chr1_3:28153604-28153623 None:intergenic 55.0%
GACGACACTGCAGATGAACC+TGG + chr1_3:28153607-28153626 None:intergenic 55.0%
GTTCCTTCAACAGGGCTGTC+AGG - chr1_3:28153856-28153875 Msa0112710:intron 55.0%
!! ACAGAGCTGTCAGGTGCTGA+TGG - chr1_3:28153901-28153920 Msa0112710:intron 55.0%
!! GGTCGAGCTCAGCTTTGAGT+CGG + chr1_3:28154118-28154137 None:intergenic 55.0%
ACTCAAAGCTGAGCTCGACC+AGG - chr1_3:28154118-28154137 Msa0112710:intron 55.0%
AAAGCTGAGCTCGACCAGGT+TGG - chr1_3:28154122-28154141 Msa0112710:intron 55.0%
! GGGTGTGATGGGGGTGTATT+GGG + chr1_3:28154387-28154406 None:intergenic 55.0%
! TGGGTGTGATGGGGGTGTAT+TGG + chr1_3:28154388-28154407 None:intergenic 55.0%
AAGAGAGCTGGGTGTGATGG+GGG + chr1_3:28154396-28154415 None:intergenic 55.0%
!! CCCAGCTCTCTTTTTGGGCT+TGG - chr1_3:28154404-28154423 Msa0112710:CDS 55.0%
! GGGTGTGATGGGGGTGTATT+GGG + chr1_3:28154387-28154406 None:intergenic 55.0%
! TGGGTGTGATGGGGGTGTAT+TGG + chr1_3:28154388-28154407 None:intergenic 55.0%
AAGAGAGCTGGGTGTGATGG+GGG + chr1_3:28154396-28154415 None:intergenic 55.0%
!! CCCAGCTCTCTTTTTGGGCT+TGG - chr1_3:28154404-28154423 Msa0112710:CDS 55.0%
! GACGGTTCTGATGATTGGGC+AGG + chr1_3:28155532-28155551 None:intergenic 55.0%
! GGCTGCTGCTACTTGTTGCA+AGG + chr1_3:28155720-28155739 None:intergenic 55.0%
AGACGATGTCACTGAGGCAG+AGG + chr1_3:28155818-28155837 None:intergenic 55.0%
GAACCAGTGGAAACCAAGGG+CGG - chr1_3:28155919-28155938 Msa0112710:intron 55.0%
GGCGGACAGAATGCTGGAAT+TGG - chr1_3:28155937-28155956 Msa0112710:intron 55.0%
! AGGTGCTAGAGTACCAACGG+TGG + chr1_3:28156049-28156068 None:intergenic 55.0%
CAGAGTCAGCCTGTGGCATT+TGG - chr1_3:28156099-28156118 Msa0112710:intron 55.0%
TCCCAGTCTGCCCAAACAAC+GGG + chr1_3:28156140-28156159 None:intergenic 55.0%
AAGCACCCCTGCTTCCTCTT+CGG - chr1_3:28156245-28156264 Msa0112710:intron 55.0%
TGGCTTCCGAAGAGGAAGCA+GGG + chr1_3:28156254-28156273 None:intergenic 55.0%
ATGGCTTCCGAAGAGGAAGC+AGG + chr1_3:28156255-28156274 None:intergenic 55.0%
AACAGGGATGGCTTCCGAAG+AGG + chr1_3:28156262-28156281 None:intergenic 55.0%
AACGGGAGTGGATGCTCCAA+AGG + chr1_3:28156406-28156425 None:intergenic 55.0%
GGAGAACTGGTAGAGGCAAC+GGG + chr1_3:28156423-28156442 None:intergenic 55.0%
CGGAGAACTGGTAGAGGCAA+CGG + chr1_3:28156424-28156443 None:intergenic 55.0%
TGCCTCTACCAGTTCTCCGA+TGG - chr1_3:28156425-28156444 Msa0112710:intron 55.0%
TTGAGGAGCTGATGCACCTG+TGG + chr1_3:28156463-28156482 None:intergenic 55.0%
CATGGAGGACAGTATGGCTG+AGG - chr1_3:28156590-28156609 Msa0112710:intron 55.0%
! CCAAATACTGGAGTGACGGG+TGG + chr1_3:28156633-28156652 None:intergenic 55.0%
CCACCCGTCACTCCAGTATT+TGG - chr1_3:28156630-28156649 Msa0112710:intron 55.0%
!! AGTTTCTCGTTGGGCACTGG+TGG - chr1_3:28156810-28156829 Msa0112710:intron 55.0%
CCATCGGAGAGCAGAGAGAG+TGG + chr1_3:28147515-28147534 None:intergenic 60.0%
CCACTCTCTCTGCTCTCCGA+TGG - chr1_3:28147512-28147531 Msa0112710:three_prime_UTR 60.0%
TCTCTGCTCTCCGATGGCGA+CGG - chr1_3:28147518-28147537 Msa0112710:three_prime_UTR 60.0%
GCGACGGCGCGTGAAGAAAA+CGG - chr1_3:28147534-28147553 Msa0112710:three_prime_UTR 60.0%
GGGTTTCTCAGAGCTGTCGG+CGG + chr1_3:28147639-28147658 None:intergenic 60.0%
AGAAGCAAGGGGCAATCGCC+AGG - chr1_3:28148749-28148768 Msa0112710:CDS 60.0%
CATTGGGAGCAGGCCTTCCA+AGG - chr1_3:28151788-28151807 Msa0112710:CDS 60.0%
GCACCTGACAGCCCTGTTGA+AGG + chr1_3:28153862-28153881 None:intergenic 60.0%
GCACCCCTCACCTTACGAAC+CGG + chr1_3:28154305-28154324 None:intergenic 60.0%
GGCAGAGGAACTGCTACTGC+TGG + chr1_3:28155803-28155822 None:intergenic 60.0%
TGTCCGCCCTTGGTTTCCAC+TGG + chr1_3:28155925-28155944 None:intergenic 60.0%
ACCAAGGGCGGACAGAATGC+TGG - chr1_3:28155931-28155950 Msa0112710:intron 60.0%
TCCAGCATTCTGTCCGCCCT+TGG + chr1_3:28155935-28155954 None:intergenic 60.0%
TCCCCGTTGTTTGGGCAGAC+TGG - chr1_3:28156135-28156154 Msa0112710:intron 60.0%
CCCAGTCTGCCCAAACAACG+GGG + chr1_3:28156139-28156158 None:intergenic 60.0%
CCCCGTTGTTTGGGCAGACT+GGG - chr1_3:28156136-28156155 Msa0112710:intron 60.0%
GGCTTCCGAAGAGGAAGCAG+GGG + chr1_3:28156253-28156272 None:intergenic 60.0%
ACTGGTAGAGGCAACGGGAG+TGG + chr1_3:28156418-28156437 None:intergenic 60.0%
TGCCGGAGGGAGTTTCTCGT+TGG - chr1_3:28156800-28156819 Msa0112710:intron 60.0%
GCCGGAGGGAGTTTCTCGTT+GGG - chr1_3:28156801-28156820 Msa0112710:intron 60.0%
GCCCAACGAGAAACTCCCTC+CGG + chr1_3:28156805-28156824 None:intergenic 60.0%
GGGAGTTTCTCGTTGGGCAC+TGG - chr1_3:28156807-28156826 Msa0112710:intron 60.0%
TCTTCACGCGCCGTCGCCAT+CGG + chr1_3:28147531-28147550 None:intergenic 65.0%
GCTGTCGGCGGTCGATCGTA+CGG + chr1_3:28147627-28147646 None:intergenic 65.0%
! GAGGAACCTGAAGGTGGCGG+TGG + chr1_3:28147768-28147787 None:intergenic 65.0%
GGCCGTCAAGATCCGGCATC+TGG - chr1_3:28149890-28149909 Msa0112710:intron 65.0%
! CCTGGTGGCGTCTCCTGTAC+AGG + chr1_3:28153589-28153608 None:intergenic 65.0%
CCTGTACAGGAGACGCCACC+AGG - chr1_3:28153586-28153605 Msa0112710:intron 65.0%
CGCACGGGCGCTCGATGATG+TGG - chr1_3:28155011-28155030 Msa0112710:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 28147402 28157386 28147402 ID=Msa0112710;Name=Msa0112710
chr1_3 mRNA 28147402 28157386 28147402 ID=Msa0112710-mRNA-1;Parent=Msa0112710;Name=Msa0112710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=129|0.87|0.77|1|0.87|1|9|493|1310
chr1_3 exon 28147402 28149350 28147402 ID=Msa0112710-mRNA-1:exon:9279;Parent=Msa0112710-mRNA-1
chr1_3 exon 28150649 28151310 28150649 ID=Msa0112710-mRNA-1:exon:9278;Parent=Msa0112710-mRNA-1
chr1_3 exon 28151781 28152494 28151781 ID=Msa0112710-mRNA-1:exon:9277;Parent=Msa0112710-mRNA-1
chr1_3 exon 28152582 28152668 28152582 ID=Msa0112710-mRNA-1:exon:9276;Parent=Msa0112710-mRNA-1
chr1_3 exon 28152748 28153047 28152748 ID=Msa0112710-mRNA-1:exon:9275;Parent=Msa0112710-mRNA-1
chr1_3 exon 28153267 28153465 28153267 ID=Msa0112710-mRNA-1:exon:9274;Parent=Msa0112710-mRNA-1
chr1_3 exon 28154318 28154514 28154318 ID=Msa0112710-mRNA-1:exon:9273;Parent=Msa0112710-mRNA-1
chr1_3 exon 28155982 28156049 28155982 ID=Msa0112710-mRNA-1:exon:9272;Parent=Msa0112710-mRNA-1
chr1_3 exon 28157008 28157386 28157008 ID=Msa0112710-mRNA-1:exon:9271;Parent=Msa0112710-mRNA-1
chr1_3 five_prime_UTR 28157258 28157386 28157258 ID=Msa0112710-mRNA-1:five_prime_utr;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28157008 28157257 28157008 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28155982 28156049 28155982 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28154318 28154514 28154318 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28153267 28153465 28153267 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28152748 28153047 28152748 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28152582 28152668 28152582 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28151781 28152494 28151781 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28150649 28151310 28150649 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 CDS 28147895 28149350 28147895 ID=Msa0112710-mRNA-1:cds;Parent=Msa0112710-mRNA-1
chr1_3 three_prime_UTR 28147402 28147894 28147402 ID=Msa0112710-mRNA-1:three_prime_utr;Parent=Msa0112710-mRNA-1
Gene Sequence

>Msa0112710

ATGGCGACGGCGCGTGAAGAAAACGGTTACGAAAACGGAGGTGGAGGATACGGAAAGTTCCGAAAACGACCCTTCAAGAGAACTCAAACGACGCCGTACGATCGACCGCCGACAGCTCTGAGAAACCCTAACAGAAACAACGGTTGGCTCTCGAAACTCATTGATCCCGCACAGAGGTTCATCACTTACAGCGCTCATAAGCTCTTCTCCTCCGTTTTCCGTAAACGCCTTAATCCACCGCCACCTTCAGAAACAGTACAAGAAGCAAGGGGCAATCGCCAGGAAGCAGCTATCTTTGTAAGTATGCTTGCTTCTGATTCGACATTCTTCAAGTTGGTAGGTTGCATCATTGATGGTTTTTGTTATTGTTTGTTGTACGAGGAGGAACAGGCTGCAAATGAGTCATCTGGCCAGCAACAAAGAGTTTTAGGTGAAAGTAGTGATCAAATTAACCTATCTGATGGAGTTGGTTTACCTGAACTTGAGGAAGTGTTAAAGCAGAAGACTTTCACCAGATCAGAGATTGATCATTTGGTAGAGCTTATGCATTCAAGATCTGTAGATACAGCTGTTGGGGAAGAAGGGAAGAAGACAGAAGTAGATCCATTAGAATCAATGTTGCCTCTTAACCAAAAGGAAGAGTATCCCCGTACCCCAGCAGTAGAAAATGGGATAAAAATCCATCCTGTTTCAACAGAACATGCCACTTCCAGTGTTTCTGTTGAAGATGTTGCTTCACCTGTGCAACTAGCAAAAGCTTACATTGGGAGCAGGCCTTCCAAGGTTTCCCCATCAATGTTAAGCATGCAAAGTCCTACTGGGGAGGATTCAACTTTACTAAAAGGCCATCACTTTGCTCAAAAATCCCCTATTATGTCAGTTGTACCAAGGGTTATTAACCATGCCAGGGTTTATGAAAATGGTTTTTTGACCCCAAGATCTCGTGGCAGATCAGTTATTTATAACATGGCTCGAACACCTTATCCTAGAGTTTATCCAGACTCCACACCCAAGGGTGCTGGGGTTGGTGTTGAAGATGGGCCGTCATCTTCATCTCAGCATGCACTCGATCATGGTGTGCTTTCTGGAACTAAACAAGGGGGATTAAAACGCAGAAGTACTGTATTAGGCAATGATATAGGGTCTTTTGGTCCTATACGCCGAATCCGTCACAAGGCTAGTCTTCTATCCTCAAAAGGATTGACCTTGACCAATTCAGACATCCCTGTATCTATAAATAGTAGTGAGATTGATGTTGCGCAGCAACCATCGTCTTCCATGCAGAAGCCTATTCTAACGGGTGAAGTTAAGCATAGCCGTGCCAAATTGTCAGTGGAAAATGATCACACCATGCCTAGTAGCAGCTTTCCTCCTTTACCATCAAAATCTAGTGAGATGGCATCAAAAATTCTGCAGCAAGTTGATAAGATGGTTTCTCCCAAAGAAAAACCATCGGTACTAAGGCTGCCACATGTGAATGATAATTCTCCATCGAAGTTGTCATCTTCCATGTTACGAGGACAAGCTCTTCGAAGCATGGAGACAGTAGATTCATCAAAATTATTGGATAATCTACATGATAATGAATTAAATGGCACTCTTAGAAGTTTGTCTGCTAGTACTCAAAAGTTGACATCAAAGGTAAGCAAGGTGGAAAATGGCCTGAAGTCTGTTTCACCGAATGATGGATTAATTCCTGCAGTAACTGGTTCAGACTCACCTGTCCCAAGAAACCAAGTCATATCTATCGGAAAGTCTAGAGATTCTTCCAACCCTCCCTCAAAAAAGAGGGCATTCTGTATGAGTGCACATGAGGATTATCTGGAGTTGGATGATGATGATGATGATGATGCCTATCCTAATGAAAATGCATCCCCTGTCTCTACTCATGCGGCTGAGAAAACAACCTTTGCCATCGAAAAACCTGTACAGGAGACGCCACCAGGTTCATCTGCAGTGTCGTCATCCAAAAGTTTTATAGCAGATGGTAAACTTAGGAATGCTGATGGTTCTATAGTTGATGAGAAGGTTGACACACCAACACCAATAACTTCATCTATTGTTGCTGGTTCTACAGCTAAGCCAAATACGGGTTCAGTTAAAGCATCGACACACACTATTTTAGATTCCGACAAGTCTACACCAAATGGATCAGCTGCTAATCCTCCCCTGTTTAACTTGGGGAAAAGTTTTGTTCCTTCAACAGGGCTGTCAGGTGCTGATGCTCAATCGAAATCAACAGAGCTGTCAGGTGCTGATGGTCAATCGAAAGAGTCCACTAAAACAGGTCCAATTGGTTTGGACAAAGCTGCACCATCAAAGGAAACAAGTGTTGATGCTCCATCATTTAATTTTGGTTTCAACAAAAATATTGACAGTGTTCCACAAGTGCCATTTACTTTCTCTTCATCGGTTGGTGGAGAGTCTACTTTTTCTAAATTTGGTGGAGCTTCCGACTCAAAGCTGAGCTCGACCAGTTCATTTACTGCTGCTGGTGATGTTGTTTCCGTGCCAAAAGTTCCTGAATCGGATAATGCTGATGCCAAGACTAATATAGTTTCTGGATTCCCTGCCCAATCATCAGAACCGTCTGCAGTATCTACATCATTGTCAACATCAACGACGAATGTATTTACCTCTGGCAACATTTCAAGTCAAAATAATGGATTTGCTGCTTCAAGCTCTACATTTTCCTCCCCATTTCTACCTGTGGTTACAAATAATTTTACAAGTCAGAATATGTTCAGCAGTTCAACCCTTGCAACAAGTAGCAGCAGCCTTAGTGCCCCTGCAACTTTCAGTACTAGCATGACAACTAGCAACATTGCTGTAAATGCATCCAGCAGTAGCAGTTCCTCTGCCTCAGTGACATCGTCTTCGTCTCCAACAACTTCCCTTTTCAAATTTGGATCCACCCCTTTACCATCAATAAGTTTACCTGTATCATCTTCTGGCTCAGAACCAGTGGAAACCAAGGGCGGACAGAATGCTGGAATTGGCATTTTTGGGTTTAGTTCGTCGGCATCATCTGCAAATAGTCAGTCTCAGACTCAGGGTTCTGTCTTTGGCAGCACTATAAGTGGGTCCACCGTTGGTACTCTAGCACCTAGTGCTACTAGTGGTTTTGCAACTTCAACACAGAGTCAGCCTGTGGCATTTGGTTCATCTTCATCATCCCCGTTGTTTGGGCAGACTGGGAATACATCTTTTTCTTCAGGGAGTTCATCGGCCCCTTCTTCAAGTCCTGCAACAAATGTTTTCAACTCTGGTACAGCTTCTGGACAAAGCACCCCTGCTTCCTCTTCGGAAGCCATCCCTGTTAGCTCCAATAATGGCACAAGTTCTACATTGTTTGGCGCTTGGCAGCCCAGCAAATCTTCTCCTTTCGGTACTCCCTTTAGTTCATCATTGTCATCTTCATCTGCATCTACCTCTGAGTTCTCCTTTGGAGCATCCACTCCCGTTGCCTCTACCAGTTCTCCGATGGTATTTGGATCATCCACAGGTGCATCAGCTCCTCAATTCTCATTCACTTCAGCTGCAGCTAATACCAATGCGCAGCCTACTTTTGGAAATCCTAGTCCCGTCTTTCCATTTGGTTCAGCTTCTGTTAATAATGATCAGACAAGCATGGAGGACAGTATGGCTGAGGACACATTTCAAGCAACACCACCCGTCACTCCAGTATTTGGTCAACAACCTGTCCCAGTTCAATCAAATTTTGTATTTGGAGGTCAACAGAATATTGCTCCACAGAATCCTTTCCAGTTTGGGGGTCAACAGAATATTGCTCCTCAAAATCCATCTCCATTTCAGGCTTCTGGCAGTCTAGAATTTAATGCCGGAGGGAGTTTCTCGTTGGGCACTGGTGGTGTTGACAAGTCTGGTCGAAAACGTATTAGTATTAAACACAACAGGCAACGTAAGAAATAA
Protein sequence

>Msa0112710

MATAREENGYENGGGGYGKFRKRPFKRTQTTPYDRPPTALRNPNRNNGWLSKLIDPAQRFITYSAHKLFSSVFRKRLNPPPPSETVQEARGNRQEAAIFVSMLASDSTFFKLVGCIIDGFCYCLLYEEEQAANESSGQQQRVLGESSDQINLSDGVGLPELEEVLKQKTFTRSEIDHLVELMHSRSVDTAVGEEGKKTEVDPLESMLPLNQKEEYPRTPAVENGIKIHPVSTEHATSSVSVEDVASPVQLAKAYIGSRPSKVSPSMLSMQSPTGEDSTLLKGHHFAQKSPIMSVVPRVINHARVYENGFLTPRSRGRSVIYNMARTPYPRVYPDSTPKGAGVGVEDGPSSSSQHALDHGVLSGTKQGGLKRRSTVLGNDIGSFGPIRRIRHKASLLSSKGLTLTNSDIPVSINSSEIDVAQQPSSSMQKPILTGEVKHSRAKLSVENDHTMPSSSFPPLPSKSSEMASKILQQVDKMVSPKEKPSVLRLPHVNDNSPSKLSSSMLRGQALRSMETVDSSKLLDNLHDNELNGTLRSLSASTQKLTSKVSKVENGLKSVSPNDGLIPAVTGSDSPVPRNQVISIGKSRDSSNPPSKKRAFCMSAHEDYLELDDDDDDDAYPNENASPVSTHAAEKTTFAIEKPVQETPPGSSAVSSSKSFIADGKLRNADGSIVDEKVDTPTPITSSIVAGSTAKPNTGSVKASTHTILDSDKSTPNGSAANPPLFNLGKSFVPSTGLSGADAQSKSTELSGADGQSKESTKTGPIGLDKAAPSKETSVDAPSFNFGFNKNIDSVPQVPFTFSSSVGGESTFSKFGGASDSKLSSTSSFTAAGDVVSVPKVPESDNADAKTNIVSGFPAQSSEPSAVSTSLSTSTTNVFTSGNISSQNNGFAASSSTFSSPFLPVVTNNFTSQNMFSSSTLATSSSSLSAPATFSTSMTTSNIAVNASSSSSSSASVTSSSSPTTSLFKFGSTPLPSISLPVSSSGSEPVETKGGQNAGIGIFGFSSSASSANSQSQTQGSVFGSTISGSTVGTLAPSATSGFATSTQSQPVAFGSSSSSPLFGQTGNTSFSSGSSSAPSSSPATNVFNSGTASGQSTPASSSEAIPVSSNNGTSSTLFGAWQPSKSSPFGTPFSSSLSSSSASTSEFSFGASTPVASTSSPMVFGSSTGASAPQFSFTSAAANTNAQPTFGNPSPVFPFGSASVNNDQTSMEDSMAEDTFQATPPVTPVFGQQPVPVQSNFVFGGQQNIAPQNPFQFGGQQNIAPQNPSPFQASGSLEFNAGGSFSLGTGGVDKSGRKRISIKHNRQRKK*