AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025100 MtrunA17_Chr7g0243051 94.643 224 12 0 1 224 1 224 4.83e-157 434
Msa1025100 MtrunA17_Chr4g0007601 59.459 222 70 3 1 220 1 204 5.78e-79 237
Msa1025100 MtrunA17_Chr6g0473621 45.909 220 116 2 3 220 18 236 6.80e-57 184
Msa1025100 MtrunA17_Chr1g0203771 43.439 221 124 1 1 220 4 224 1.13e-55 180
Msa1025100 MtrunA17_Chr4g0057261 44.118 204 111 2 13 216 28 228 1.61e-46 155
Msa1025100 MtrunA17_Chr2g0285591 38.235 204 124 2 19 222 30 231 1.91e-44 149
Msa1025100 MtrunA17_Chr6g0458281 44.068 118 58 2 10 123 23 136 8.64e-25 95.5
Msa1025100 MtrunA17_Chr6g0458271 45.370 108 56 1 16 123 35 139 1.19e-24 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025100 AT3G51780.1 48.131 214 99 2 19 220 10 223 3.49e-59 187
Msa1025100 AT5G52060.1 44.554 202 110 1 21 220 41 242 1.07e-49 165
Msa1025100 AT5G07220.1 41.629 221 124 3 1 220 4 220 3.66e-47 158
Msa1025100 AT5G62100.2 37.981 208 127 1 16 223 12 217 4.09e-42 144
Msa1025100 AT5G62100.1 36.530 219 126 3 16 223 12 228 6.66e-39 136
Msa1025100 AT5G62100.5 36.410 195 118 3 10 202 6 196 8.70e-37 128
Msa1025100 AT5G62100.4 35.897 195 119 3 10 202 6 196 2.51e-36 127
Msa1025100 AT5G62100.3 36.054 147 88 3 10 154 6 148 3.50e-25 96.7
Msa1025100 AT5G62100.6 36.054 147 88 3 10 154 6 148 3.50e-25 96.7
Msa1025100 AT5G14360.1 45.872 109 51 2 17 123 46 148 1.25e-23 93.2
Msa1025100 AT5G40630.1 42.593 108 58 3 14 120 51 155 5.19e-20 83.6

Find 85 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTACATGAACCCCTTTC+TGG 0.144631 7_1:+55291174 None:intergenic
CAGCAAATACTCTTCTTTAA+TGG 0.182385 7_1:-55293367 Msa1025100:CDS
GCATTACCAATGTTGCTATA+AGG 0.252013 7_1:+55291504 None:intergenic
AAACAACGTATAAATAAATT+TGG 0.267316 7_1:-55291053 Msa1025100:three_prime_UTR
AGAATCAAGGTTCAAAATTA+TGG 0.288737 7_1:+55291311 None:intergenic
CAATTGGAGACCTTTGACTT+TGG 0.294069 7_1:-55291465 Msa1025100:three_prime_UTR
AAGAAGAGTATTTGCTGTTC+AGG 0.301501 7_1:+55293373 None:intergenic
GAAATCAAAACGCGAGTAAT+TGG 0.308015 7_1:+55297261 None:intergenic
AGCCTTTGAAGAATACAAAA+AGG 0.311962 7_1:-55291229 Msa1025100:three_prime_UTR
GCTGGAGCTGGATGGTATTA+AGG 0.331947 7_1:-55292975 Msa1025100:CDS
GAACCTTGATTCTTCATTTG+AGG 0.350916 7_1:-55291301 Msa1025100:three_prime_UTR
AAACTGCTTGCACACAAAAC+TGG 0.371537 7_1:-55293403 Msa1025100:CDS
AACACCGCCGCTTATTCTTC+CGG 0.374973 7_1:-55297222 Msa1025100:CDS
CATTACCAATGTTGCTATAA+GGG 0.383467 7_1:+55291505 None:intergenic
GGCAAATATCTTTAAACACT+TGG 0.385329 7_1:-55291254 Msa1025100:three_prime_UTR
TACTACACGTTACTCAAGAT+TGG 0.391701 7_1:-55291391 Msa1025100:three_prime_UTR
TTCGTACAGACACGCGAATC+AGG 0.397002 7_1:-55297144 Msa1025100:CDS
GTTGCTTATGAGGAAATTGC+TGG 0.415619 7_1:-55292993 Msa1025100:CDS
AATTACATGAACCCCTTTCT+GGG 0.421553 7_1:+55291175 None:intergenic
CTTGAGTAACGTGTAGTAGA+TGG 0.435924 7_1:+55291396 None:intergenic
CTTCTTTAATGGAAAAGAAA+AGG 0.438093 7_1:-55293356 Msa1025100:CDS
AAAGTCAAAGGTCTCCAATT+GGG 0.443694 7_1:+55291467 None:intergenic
CAAAGTCAAAGGTCTCCAAT+TGG 0.452077 7_1:+55291466 None:intergenic
TTAAATCTTAACATGCCGTC+AGG 0.458775 7_1:+55291121 None:intergenic
TAGATACTCTCGCCCAGAAA+GGG 0.459277 7_1:-55291187 Msa1025100:three_prime_UTR
AAATTCTTTGTCAGAAACCT+TGG 0.460069 7_1:+55293030 None:intergenic
GCCTTGGATGTGGCTGTCAA+TGG 0.461186 7_1:-55293058 Msa1025100:CDS
CGGTGTCTCGCCGCCGAATG+AGG 0.463239 7_1:-55297202 Msa1025100:CDS
CATTCGATATCCGCCTCATT+CGG 0.471255 7_1:+55297189 None:intergenic
TGACTACAGAGTTGCTTATG+AGG 0.474307 7_1:-55293003 Msa1025100:CDS
GAAGAGAGTCTCACAGAAAG+AGG 0.485676 7_1:+55297035 None:intergenic
CTCATTCGGCGGCGAGACAC+CGG 0.488256 7_1:+55297203 None:intergenic
GAATAAGCGGCGGTGTTCAT+CGG 0.491708 7_1:+55297228 None:intergenic
TATGAGGAAATTGCTGGAGC+TGG 0.493825 7_1:-55292987 Msa1025100:CDS
ACTACACGTTACTCAAGATT+GGG 0.498336 7_1:-55291390 Msa1025100:three_prime_UTR
TTTCAAGCTGTTGCTGCAGT+CGG 0.507434 7_1:-55293208 Msa1025100:CDS
AGTCTCAGCAACAACCCAAT+TGG 0.512112 7_1:-55291481 Msa1025100:three_prime_UTR
AGGTGGACAAGCTTTGTGAC+AGG 0.514120 7_1:-55293180 Msa1025100:CDS
GCAAATATCTTTAAACACTT+GGG 0.516084 7_1:-55291253 Msa1025100:three_prime_UTR
AAGTATGAGATGACGAGAGG+AGG 0.520287 7_1:-55297338 Msa1025100:five_prime_UTR
GCAGGTGTCAGCCTTGGATG+TGG 0.533074 7_1:-55293068 Msa1025100:intron
GGTCCTCAAATGAAGAATCA+AGG 0.541023 7_1:+55291298 None:intergenic
CGAATGAGGCGGATATCGAA+TGG 0.551079 7_1:-55297188 Msa1025100:CDS
ATAGATACTCTCGCCCAGAA+AGG 0.551868 7_1:-55291188 Msa1025100:three_prime_UTR
GGAGACCTTTGACTTTGGAA+TGG 0.552665 7_1:-55291460 Msa1025100:three_prime_UTR
GAAGAGAATTTGCACATGGA+AGG 0.561882 7_1:-55293328 Msa1025100:CDS
GATGTTGATCATCGGTCCAT+CGG 0.564771 7_1:+55297107 None:intergenic
ATCAACATCAGTGTTGCGTA+TGG 0.567834 7_1:-55297093 Msa1025100:CDS
TTTGCACATGGAAGGTGTGA+AGG 0.571899 7_1:-55293320 Msa1025100:CDS
GAATGAGGCGGATATCGAAT+GGG 0.572222 7_1:-55297187 Msa1025100:CDS
AGTAAGTATGAGATGACGAG+AGG 0.573322 7_1:-55297341 Msa1025100:five_prime_UTR
GTCTGTACGAACATACCGCC+GGG 0.573976 7_1:+55297156 None:intergenic
GCCTACCCTTATAGCAACAT+TGG 0.578200 7_1:-55291510 Msa1025100:exon
TGCTGCAGTCGGATCAGAGG+TGG 0.581148 7_1:-55293197 Msa1025100:CDS
GCTTACCATTCCAAAGTCAA+AGG 0.581977 7_1:+55291455 None:intergenic
TCCATTGACAGCCACATCCA+AGG 0.592193 7_1:+55293057 None:intergenic
AAGATTACTCTCTTTGCTAG+CGG 0.600065 7_1:+55293267 None:intergenic
GGTGGACAAGCTTTGTGACA+GGG 0.600958 7_1:-55293179 Msa1025100:intron
TGGATGTGGCTGTCAATGGA+GGG 0.601202 7_1:-55293054 Msa1025100:CDS
CTGGATGGTATTAAGGCTGA+AGG 0.605506 7_1:-55292968 Msa1025100:CDS
GGTGATGATGACGATGAGGT+TGG 0.605624 7_1:+55291423 None:intergenic
CGAGACACCGGAAGAATAAG+CGG 0.607254 7_1:+55297215 None:intergenic
GGCTGTCAATGGAGGGACCA+AGG 0.612660 7_1:-55293047 Msa1025100:CDS
AGGAAATTGCTGGAGCTGGA+TGG 0.613422 7_1:-55292983 Msa1025100:CDS
GGCAAGATCAATACTCACAA+TGG 0.614241 7_1:+55291142 None:intergenic
TAGCAAAGAGAGTAATCTTG+AGG 0.616282 7_1:-55293263 Msa1025100:CDS
ACGTTACTCAAGATTGGGAG+CGG 0.616842 7_1:-55291385 Msa1025100:three_prime_UTR
ACCAATGTTGCTATAAGGGT+AGG 0.620297 7_1:+55291509 None:intergenic
TTGGATGTGGCTGTCAATGG+AGG 0.622456 7_1:-55293055 Msa1025100:CDS
TGTTGCTGCAGTCGGATCAG+AGG 0.624129 7_1:-55293200 Msa1025100:CDS
ATGTTGCTATAAGGGTAGGC+GGG 0.625797 7_1:+55291513 None:intergenic
ACGGGGAAAGACAAGAGAAG+AGG 0.635564 7_1:+55297297 None:intergenic
AATGTTGCTATAAGGGTAGG+CGG 0.639836 7_1:+55291512 None:intergenic
TGATACTTTAGATTCCCTGA+AGG 0.643562 7_1:-55291545 Msa1025100:CDS
TAAGTTGCAGAGAAAAGCTG+AGG 0.643704 7_1:-55292939 Msa1025100:intron
GCAACACTGATGTTGATCAT+CGG 0.648002 7_1:+55297099 None:intergenic
GAATGAAGAGAATTTGCACA+TGG 0.664413 7_1:-55293332 Msa1025100:CDS
TGAGTATTGATCTTGCCTGA+CGG 0.675553 7_1:-55291136 Msa1025100:three_prime_UTR
GGTGACGATGATCATACCGA+TGG 0.677266 7_1:-55297123 Msa1025100:CDS
TAACGTGTAGTAGATGGTGG+TGG 0.679118 7_1:+55291402 None:intergenic
TGGTGGTGATGATGACGATG+AGG 0.690358 7_1:+55291419 None:intergenic
GACACCGGAAGAATAAGCGG+CGG 0.727415 7_1:+55297218 None:intergenic
GAGTAACGTGTAGTAGATGG+TGG 0.730515 7_1:+55291399 None:intergenic
GAATGGGAGATGCGTCCCGG+CGG 0.755454 7_1:-55297171 Msa1025100:CDS
GTTTGCTTGATGCTACACTG+TGG 0.759363 7_1:+55291072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATATAAAGTAAGA+AGG - chr7_1:55291050-55291069 Msa1025100:three_prime_UTR 10.0%
!! TTAAAAATATAAAGTAAGAA+GGG - chr7_1:55291051-55291070 Msa1025100:three_prime_UTR 10.0%
!!! TTTAAATCATAAGATTTTAA+AGG + chr7_1:55292357-55292376 None:intergenic 10.0%
!! TTATTAATCTATTTAGTAAA+TGG - chr7_1:55293410-55293429 Msa1025100:CDS 10.0%
!!! TAATTGAATAATTTTTTGTA+AGG - chr7_1:55293736-55293755 Msa1025100:intron 10.0%
!! AAACGAATATATTAAATTTA+AGG + chr7_1:55293808-55293827 None:intergenic 10.0%
!!! TAAGATTTTAAAGGATTTTA+TGG + chr7_1:55292348-55292367 None:intergenic 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG + chr7_1:55292441-55292460 None:intergenic 15.0%
!!! TTTTTATAAGCTAATTCAAT+TGG - chr7_1:55292669-55292688 Msa1025100:intron 15.0%
!!! TACAGATTAATATGTTTTTT+GGG + chr7_1:55293241-55293260 None:intergenic 15.0%
!!! TTACAGATTAATATGTTTTT+TGG + chr7_1:55293242-55293261 None:intergenic 15.0%
!! AAAACATATTAATCTGTAAT+TGG - chr7_1:55293243-55293262 Msa1025100:CDS 15.0%
!!! TTCATCTATTGATTAATTTT+CGG - chr7_1:55293562-55293581 Msa1025100:intron 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr7_1:55293662-55293681 None:intergenic 15.0%
!! ACCTAAAAAATTATAATCTA+TGG - chr7_1:55293764-55293783 Msa1025100:intron 15.0%
!! CCTAAAAAATTATAATCTAT+GGG - chr7_1:55293765-55293784 Msa1025100:intron 15.0%
!!! TTTTATTGTTCCTTTATATT+TGG - chr7_1:55293836-55293855 Msa1025100:intron 15.0%
!! ATTAAACTGTTTATCTAAAT+AGG - chr7_1:55294056-55294075 Msa1025100:intron 15.0%
!! AGGAGATATATATATATTTA+TGG - chr7_1:55294076-55294095 Msa1025100:intron 15.0%
!!! ATATTGATTTCTTTTCTTTT+AGG - chr7_1:55294376-55294395 Msa1025100:intron 15.0%
!!! TATATCATATAATTTGCTTA+AGG + chr7_1:55294825-55294844 None:intergenic 15.0%
!!! TTAATTTAGTCTTTAATAAC+AGG - chr7_1:55295004-55295023 Msa1025100:intron 15.0%
!!! TAATTTAGTCTTTAATAACA+GGG - chr7_1:55295005-55295024 Msa1025100:intron 15.0%
!! TATTATAGAAACATAATAAC+TGG - chr7_1:55295314-55295333 Msa1025100:intron 15.0%
!!! ATTTGTTTTTAAAATTCCAA+TGG - chr7_1:55296182-55296201 Msa1025100:intron 15.0%
!! ATCATTCATATTATCTTTAA+AGG - chr7_1:55296808-55296827 Msa1025100:intron 15.0%
!! AAACAACGTATAAATAAATT+TGG - chr7_1:55297387-55297406 Msa1025100:five_prime_UTR 15.0%
!! TTTGTGAAGTGTAAAAATTT+AGG - chr7_1:55291612-55291631 Msa1025100:intron 20.0%
!! TTGTGAAGTGTAAAAATTTA+GGG - chr7_1:55291613-55291632 Msa1025100:intron 20.0%
!! TTAATTATGAAAAAGTCTTG+TGG - chr7_1:55291678-55291697 Msa1025100:intron 20.0%
!! GCAATTTAAAAAAAATCTTG+TGG - chr7_1:55291720-55291739 Msa1025100:intron 20.0%
!!! GTCATTTTAAAAAAGTTTTG+AGG - chr7_1:55291762-55291781 Msa1025100:intron 20.0%
!! CAAAATCATTCAAATTTCAA+AGG - chr7_1:55291831-55291850 Msa1025100:intron 20.0%
!!! TTAGATTTTTATGGATTTTG+TGG - chr7_1:55291867-55291886 Msa1025100:intron 20.0%
!!! TAGATTTTTATGGATTTTGT+GGG - chr7_1:55291868-55291887 Msa1025100:intron 20.0%
!!! TTATTTTCATGAGTTTATAG+CGG - chr7_1:55292645-55292664 Msa1025100:intron 20.0%
!! AAGATTAAAATGGAGATAAA+AGG + chr7_1:55292718-55292737 None:intergenic 20.0%
!! ATGAAGATTCAAGATTAAAA+TGG + chr7_1:55292728-55292747 None:intergenic 20.0%
!! TGTTTGGCAAAAAAAAATAA+TGG + chr7_1:55292934-55292953 None:intergenic 20.0%
!!! ACAGATTAATATGTTTTTTG+GGG + chr7_1:55293240-55293259 None:intergenic 20.0%
!!! GGTTGGTATAAATTTATATT+CGG - chr7_1:55293264-55293283 Msa1025100:CDS 20.0%
!!! AATTTGTTTATGCTAGTTTT+CGG + chr7_1:55293336-55293355 None:intergenic 20.0%
!! AATAACCTATTTGTATACAT+TGG - chr7_1:55293379-55293398 Msa1025100:CDS 20.0%
!! ATTTAGTAAATGGTCAATTA+TGG - chr7_1:55293420-55293439 Msa1025100:intron 20.0%
!! CAATAGCTATTTAAAAAAGT+TGG + chr7_1:55293476-55293495 None:intergenic 20.0%
!!! TATTGTCAATTTTTATCCTT+TGG - chr7_1:55293491-55293510 Msa1025100:intron 20.0%
!!! TCTAAGATTTTGTTTGATTT+TGG - chr7_1:55293635-55293654 Msa1025100:intron 20.0%
!!! CCCATAGATTATAATTTTTT+AGG + chr7_1:55293768-55293787 None:intergenic 20.0%
!!! TTTACTCTATTTGTTGAAAT+TGG - chr7_1:55294119-55294138 Msa1025100:intron 20.0%
!!! TTACTCTATTTGTTGAAATT+GGG - chr7_1:55294120-55294139 Msa1025100:intron 20.0%
!! ATCAATATATCTAACCATTT+AGG + chr7_1:55294364-55294383 None:intergenic 20.0%
!! AAGAAAGAAAGATTGTTTAA+TGG + chr7_1:55294543-55294562 None:intergenic 20.0%
!! TATTACGATGTTAAAAAGAA+TGG - chr7_1:55294649-55294668 Msa1025100:intron 20.0%
!!! TCTTTATTTATGTATTAGTG+TGG - chr7_1:55294708-55294727 Msa1025100:intron 20.0%
!!! CTTTATTTATGTATTAGTGT+GGG - chr7_1:55294709-55294728 Msa1025100:intron 20.0%
!!! AGAAAATATTTTGTTTCCAT+TGG - chr7_1:55294968-55294987 Msa1025100:intron 20.0%
!!! AATTTAGTCTTTAATAACAG+GGG - chr7_1:55295006-55295025 Msa1025100:intron 20.0%
!! AATAATAATATGGGAAACAT+GGG + chr7_1:55295291-55295310 None:intergenic 20.0%
!! TAATAATAATATGGGAAACA+TGG + chr7_1:55295292-55295311 None:intergenic 20.0%
!!! ATTACTGATTTTAATTTTGC+AGG - chr7_1:55295354-55295373 Msa1025100:intron 20.0%
!!! ATGAATTTTAAATCATCACT+TGG - chr7_1:55295640-55295659 Msa1025100:intron 20.0%
!!! ATTAACAAATTTTACTTGAG+AGG + chr7_1:55296082-55296101 None:intergenic 20.0%
!!! TATATACTTTTTTCTTGTTG+AGG - chr7_1:55296151-55296170 Msa1025100:intron 20.0%
!!! AAGTTATCTAACCATAATTT+TGG - chr7_1:55296301-55296320 Msa1025100:intron 20.0%
!! AAATATCAACACCAAAATTA+TGG + chr7_1:55296315-55296334 None:intergenic 20.0%
!!! ATAATTTTGGTGTTGATATT+TGG - chr7_1:55296314-55296333 Msa1025100:intron 20.0%
!!! TTTTTTTTTTACCTTCAAAC+AGG - chr7_1:55296850-55296869 Msa1025100:intron 20.0%
!! TTAAGCAAACTACAAAAAAT+CGG + chr7_1:55297166-55297185 None:intergenic 20.0%
!!! GTTGTATTTTCGTTTGATTT+TGG - chr7_1:55291463-55291482 Msa1025100:three_prime_UTR 25.0%
!! TTCTTGAATTTTGTGAAATG+AGG - chr7_1:55291562-55291581 Msa1025100:CDS 25.0%
! TGTGAAGTGTAAAAATTTAG+GGG - chr7_1:55291614-55291633 Msa1025100:intron 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG - chr7_1:55291804-55291823 Msa1025100:intron 25.0%
!!! CATGATTTTAAAAGACAATC+AGG + chr7_1:55292404-55292423 None:intergenic 25.0%
!!! GTATTGGATTAGGATTTTAA+AGG + chr7_1:55292489-55292508 None:intergenic 25.0%
! ATAGCTTATAGTTTATAAGC+TGG - chr7_1:55292561-55292580 Msa1025100:intron 25.0%
! CATATTAATCTGTAATTGGT+TGG - chr7_1:55293247-55293266 Msa1025100:CDS 25.0%
! GGCTCAATGTTTATTATTTA+GGG + chr7_1:55293293-55293312 None:intergenic 25.0%
! TGGCTCAATGTTTATTATTT+AGG + chr7_1:55293294-55293313 None:intergenic 25.0%
!! CTTTTCCAATGTATACAAAT+AGG + chr7_1:55293387-55293406 None:intergenic 25.0%
!! TACTCTATTTGTTGAAATTG+GGG - chr7_1:55294121-55294140 Msa1025100:intron 25.0%
! ATAGTGTATTGTGTTGAAAA+TGG - chr7_1:55294307-55294326 Msa1025100:intron 25.0%
!!! AGGTTTAAACTGTTTTTGAT+AGG - chr7_1:55294396-55294415 Msa1025100:intron 25.0%
! AACTTGTAATGACAATACTA+GGG - chr7_1:55294428-55294447 Msa1025100:intron 25.0%
!! ATTAGCTTACCTAAAATCAA+AGG + chr7_1:55294491-55294510 None:intergenic 25.0%
! AAGCTAATACATATTAGTGA+AGG - chr7_1:55294503-55294522 Msa1025100:intron 25.0%
!! CATTACTAGTTTAGTTACTA+AGG + chr7_1:55294758-55294777 None:intergenic 25.0%
! ATCTTGATATGGAATATGTT+TGG - chr7_1:55294894-55294913 Msa1025100:intron 25.0%
! TCTTGATATGGAATATGTTT+GGG - chr7_1:55294895-55294914 Msa1025100:intron 25.0%
! CTTCTTTAATGGAAAAGAAA+AGG - chr7_1:55295084-55295103 Msa1025100:intron 25.0%
!! TTTTAAATCATCACTTGGAT+TGG - chr7_1:55295645-55295664 Msa1025100:intron 25.0%
! TCAAATACATAGATACTATC+AGG + chr7_1:55295811-55295830 None:intergenic 25.0%
!! CAAAAGAGTATATTCATGTT+AGG - chr7_1:55295899-55295918 Msa1025100:intron 25.0%
!!! TGATGTTAATGGATTGTTTT+AGG - chr7_1:55296230-55296249 Msa1025100:intron 25.0%
!!! TTGTTTTAGGAATGAGTATT+CGG - chr7_1:55296243-55296262 Msa1025100:intron 25.0%
! ACAAATAAGCTTGAAGAAAA+AGG + chr7_1:55296354-55296373 None:intergenic 25.0%
! GAACAATTCAAATTTCCTTA+CGG + chr7_1:55296416-55296435 None:intergenic 25.0%
! TAGAAAGCAACAATATAACA+TGG + chr7_1:55296466-55296485 None:intergenic 25.0%
! TTACAGGAAGAAGAAAAAAA+TGG + chr7_1:55296524-55296543 None:intergenic 25.0%
! GGTGATATTTATAATGTACT+GGG + chr7_1:55296554-55296573 None:intergenic 25.0%
! AGGTGATATTTATAATGTAC+TGG + chr7_1:55296555-55296574 None:intergenic 25.0%
! AAAAAAAAAAACCTCTGTTC+AGG + chr7_1:55296834-55296853 None:intergenic 25.0%
! AGAATCAAGGTTCAAAATTA+TGG + chr7_1:55297132-55297151 None:intergenic 25.0%
!!! GATTTTTTGTAGTTTGCTTA+AGG - chr7_1:55297165-55297184 Msa1025100:CDS 25.0%
! GCAAATATCTTTAAACACTT+GGG - chr7_1:55297187-55297206 Msa1025100:CDS 25.0%
!! AATTGGTGCGTTTTGATAAA+CGG + chr7_1:55291165-55291184 None:intergenic 30.0%
GTGAAATGAGGAATAATTGA+TGG - chr7_1:55291574-55291593 Msa1025100:intron 30.0%
GTGAAGTGTAAAAATTTAGG+GGG - chr7_1:55291615-55291634 Msa1025100:intron 30.0%
AAAAATTTAGGGGGATGTAT+TGG - chr7_1:55291624-55291643 Msa1025100:intron 30.0%
! TGTATTGGATCAGGATTTTA+AGG - chr7_1:55291639-55291658 Msa1025100:intron 30.0%
! GTATTGGATCAGGATTTTAA+GGG - chr7_1:55291640-55291659 Msa1025100:intron 30.0%
CAAGAAAAAGTCTTTCATGA+AGG - chr7_1:55291911-55291930 Msa1025100:intron 30.0%
! ATGAAGGCATAAGATTTCTT+GGG - chr7_1:55291927-55291946 Msa1025100:intron 30.0%
! TTTTATGAGAGATAGAGAGA+GGG + chr7_1:55292218-55292237 None:intergenic 30.0%
! TTTTTATGAGAGATAGAGAG+AGG + chr7_1:55292219-55292238 None:intergenic 30.0%
ATTCTCAATTTGGATTTCGA+TGG + chr7_1:55292381-55292400 None:intergenic 30.0%
AAGACATAAAATTGAGCTCA+TGG - chr7_1:55292535-55292554 Msa1025100:intron 30.0%
CTGATTGAATTTGTAGTGTT+TGG + chr7_1:55292828-55292847 None:intergenic 30.0%
GTAAATTAAAGCAACACCAA+AGG + chr7_1:55293510-55293529 None:intergenic 30.0%
! CTAGCAAAATTTTTATGCAG+GGG + chr7_1:55293862-55293881 None:intergenic 30.0%
! GCTAGCAAAATTTTTATGCA+GGG + chr7_1:55293863-55293882 None:intergenic 30.0%
! AGCTAGCAAAATTTTTATGC+AGG + chr7_1:55293864-55293883 None:intergenic 30.0%
!! AATTGGGGTTGATTTAGTTT+TGG - chr7_1:55294136-55294155 Msa1025100:intron 30.0%
TGGTGAAAACATGTTGTAAA+TGG - chr7_1:55294156-55294175 Msa1025100:intron 30.0%
GGATAAGAGGTTTAATATCT+CGG - chr7_1:55294218-55294237 Msa1025100:intron 30.0%
GAACTTGTAATGACAATACT+AGG - chr7_1:55294427-55294446 Msa1025100:intron 30.0%
TCAACACTACATATTTGTTC+AGG + chr7_1:55294566-55294585 None:intergenic 30.0%
GAAATTTGAATTTCGAACTG+AGG - chr7_1:55294615-55294634 Msa1025100:intron 30.0%
CATTCTCGATGCAAATTAAA+TGG + chr7_1:55294680-55294699 None:intergenic 30.0%
CTTGATATGGAATATGTTTG+GGG - chr7_1:55294896-55294915 Msa1025100:intron 30.0%
CAGCAAATACTCTTCTTTAA+TGG - chr7_1:55295073-55295092 Msa1025100:intron 30.0%
AAATTCTTTGTCAGAAACCT+TGG + chr7_1:55295413-55295432 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG - chr7_1:55295513-55295532 Msa1025100:intron 30.0%
TGACCTAGCATAAAAAGTAA+TGG + chr7_1:55295576-55295595 None:intergenic 30.0%
!!! TTACTTTTTATGCTAGGTCA+TGG - chr7_1:55295576-55295595 Msa1025100:intron 30.0%
! TTGCTATGATTTTTGTGAAG+TGG - chr7_1:55295673-55295692 Msa1025100:intron 30.0%
TAAGTCCTGACTCATAATAT+TGG - chr7_1:55295963-55295982 Msa1025100:intron 30.0%
TCTAACCAATATTATGAGTC+AGG + chr7_1:55295971-55295990 None:intergenic 30.0%
TTCAAAGAGATTCATGCAAT+AGG + chr7_1:55296017-55296036 None:intergenic 30.0%
AGATACTTGCATAGTTCTTT+CGG - chr7_1:55296036-55296055 Msa1025100:intron 30.0%
CTATCACTAGAAAACTCTAT+TGG - chr7_1:55296123-55296142 Msa1025100:intron 30.0%
AAAATTCCAATGGTTCTTGA+TGG - chr7_1:55296192-55296211 Msa1025100:intron 30.0%
!! GTGATATTTGGTGATGTTAA+TGG - chr7_1:55296219-55296238 Msa1025100:intron 30.0%
TTAGATAACTTGACCTCAAA+AGG + chr7_1:55296292-55296311 None:intergenic 30.0%
TGCAATTGTTTATTTCCGTA+AGG - chr7_1:55296398-55296417 Msa1025100:intron 30.0%
AGGAAGAAGAAAAAAATGGT+GGG + chr7_1:55296520-55296539 None:intergenic 30.0%
CAATGAAATCTACTTGTGTT+GGG - chr7_1:55296633-55296652 Msa1025100:intron 30.0%
! TATCCTTTTACACTGAGTTA+CGG + chr7_1:55296731-55296750 None:intergenic 30.0%
ATAAATTCTTGTACTGCTTG+CGG - chr7_1:55296748-55296767 Msa1025100:intron 30.0%
CATTACCAATGTTGCTATAA+GGG + chr7_1:55296938-55296957 None:intergenic 30.0%
GGCAAATATCTTTAAACACT+TGG - chr7_1:55297186-55297205 Msa1025100:CDS 30.0%
! AGCCTTTGAAGAATACAAAA+AGG - chr7_1:55297211-55297230 Msa1025100:CDS 30.0%
! GCCTTTGAAGAATACAAAAA+GGG - chr7_1:55297212-55297231 Msa1025100:CDS 30.0%
! TCCCTTTTTGTATTCTTCAA+AGG + chr7_1:55297216-55297235 None:intergenic 30.0%
GAATACAAAAAGGGAAATGA+AGG - chr7_1:55297221-55297240 Msa1025100:CDS 30.0%
!! ATTGGTGCGTTTTGATAAAC+GGG + chr7_1:55291164-55291183 None:intergenic 35.0%
GAAATCAAAACGCGAGTAAT+TGG + chr7_1:55291182-55291201 None:intergenic 35.0%
!!! TTCTCTCTATGCTGATTTTG+TGG - chr7_1:55291425-55291444 Msa1025100:three_prime_UTR 35.0%
! CATGAAGGCATAAGATTTCT+TGG - chr7_1:55291926-55291945 Msa1025100:intron 35.0%
AGAAAAGGGAGAATAGAGAA+GGG + chr7_1:55292010-55292029 None:intergenic 35.0%
AGAAGGGAGAAAAGAAAAAG+GGG + chr7_1:55292178-55292197 None:intergenic 35.0%
GAGAAGGGAGAAAAGAAAAA+GGG + chr7_1:55292179-55292198 None:intergenic 35.0%
AGAGAAGGGAGAAAAGAAAA+AGG + chr7_1:55292180-55292199 None:intergenic 35.0%
TTTATGAGAGATAGAGAGAG+GGG + chr7_1:55292217-55292236 None:intergenic 35.0%
GACAATCAGGATTCTCAATT+TGG + chr7_1:55292391-55292410 None:intergenic 35.0%
ACCAAACAGACACTAAGTAA+GGG + chr7_1:55292515-55292534 None:intergenic 35.0%
TACCAAACAGACACTAAGTA+AGG + chr7_1:55292516-55292535 None:intergenic 35.0%
GTAGTGTTTGGTAGAATTAG+CGG + chr7_1:55292816-55292835 None:intergenic 35.0%
AGCCTTAGTTACTTGGATTA+GGG - chr7_1:55292955-55292974 Msa1025100:CDS 35.0%
TACCCTAATCCAAGTAACTA+AGG + chr7_1:55292960-55292979 None:intergenic 35.0%
AACCATTTAACCCCAAAAGT+GGG + chr7_1:55293060-55293079 None:intergenic 35.0%
TAACCATTTAACCCCAAAAG+TGG + chr7_1:55293061-55293080 None:intergenic 35.0%
TCCAAACTCGTCTATAATGT+CGG + chr7_1:55293090-55293109 None:intergenic 35.0%
ATGTTGGTCAAGAGATTCAA+TGG - chr7_1:55294197-55294216 Msa1025100:intron 35.0%
CAAGAGATTCAATGGATAAG+AGG - chr7_1:55294205-55294224 Msa1025100:intron 35.0%
TAAGAGGTTTAATATCTCGG+TGG - chr7_1:55294221-55294240 Msa1025100:intron 35.0%
!!! TGGTTGAGTTGGTTTTTTGA+AGG - chr7_1:55294241-55294260 Msa1025100:intron 35.0%
!!! GGTTGAGTTGGTTTTTTGAA+GGG - chr7_1:55294242-55294261 Msa1025100:intron 35.0%
GTGTATTGTGTTGAAAATGG+TGG - chr7_1:55294310-55294329 Msa1025100:intron 35.0%
TGATATGGCTGAATCCTAAA+TGG - chr7_1:55294347-55294366 Msa1025100:intron 35.0%
!!! CTGTTTTTGATAGGTGAAAG+TGG - chr7_1:55294405-55294424 Msa1025100:intron 35.0%
!! GAGCTAAGTCCTTTGATTTT+AGG - chr7_1:55294479-55294498 Msa1025100:intron 35.0%
TCGATGCAAATTAAATGGAG+GGG + chr7_1:55294675-55294694 None:intergenic 35.0%
CTCGATGCAAATTAAATGGA+GGG + chr7_1:55294676-55294695 None:intergenic 35.0%
TCTCGATGCAAATTAAATGG+AGG + chr7_1:55294677-55294696 None:intergenic 35.0%
GCATCATGTGTATCTTGATA+TGG - chr7_1:55294883-55294902 Msa1025100:intron 35.0%
TAAGACGAAACACATACCAA+TGG + chr7_1:55294987-55295006 None:intergenic 35.0%
!! AAGAAGAGTATTTGCTGTTC+AGG + chr7_1:55295070-55295089 None:intergenic 35.0%
GAATGAAGAGAATTTGCACA+TGG - chr7_1:55295108-55295127 Msa1025100:intron 35.0%
! CAAGTCAAAGCTTTTGCTTT+TGG - chr7_1:55295144-55295163 Msa1025100:intron 35.0%
AAGATTACTCTCTTTGCTAG+CGG + chr7_1:55295176-55295195 None:intergenic 35.0%
TAGCAAAGAGAGTAATCTTG+AGG - chr7_1:55295177-55295196 Msa1025100:intron 35.0%
TGACTTGAAAGCTTAACTGT+TGG - chr7_1:55295549-55295568 Msa1025100:intron 35.0%
!!! GGTCCATTACTTTTTATGCT+AGG - chr7_1:55295570-55295589 Msa1025100:intron 35.0%
TTATGCTAGGTCATGGAAAA+TGG - chr7_1:55295583-55295602 Msa1025100:intron 35.0%
TGTTAAAGAGCAGCATATCA+TGG + chr7_1:55295705-55295724 None:intergenic 35.0%
! AATATTGTTGTTCAAGCCTG+TGG - chr7_1:55295764-55295783 Msa1025100:intron 35.0%
! AAAGTAAAGCTTTGATCCAC+AGG + chr7_1:55295783-55295802 None:intergenic 35.0%
! ATTTTTGCCTAGTACTGCAA+TGG - chr7_1:55295832-55295851 Msa1025100:intron 35.0%
TAAATTGCCATTGCAGTACT+AGG + chr7_1:55295842-55295861 None:intergenic 35.0%
TGCAATGGCAATTTATATGC+TGG - chr7_1:55295847-55295866 Msa1025100:intron 35.0%
GCAATGGCAATTTATATGCT+GGG - chr7_1:55295848-55295867 Msa1025100:intron 35.0%
!!! TTTTTTCTTGTTGAGGTCAC+AGG - chr7_1:55296158-55296177 Msa1025100:intron 35.0%
! CTTGATGGTCAAGTGATATT+TGG - chr7_1:55296207-55296226 Msa1025100:intron 35.0%
CTTGAAGAAAAAGGTAGAGA+AGG + chr7_1:55296345-55296364 None:intergenic 35.0%
CATGGCAACAATTCACAAAT+GGG + chr7_1:55296448-55296467 None:intergenic 35.0%
ACATGGCAACAATTCACAAA+TGG + chr7_1:55296449-55296468 None:intergenic 35.0%
TACATGTGTATGATGTTCTC+TGG - chr7_1:55296484-55296503 Msa1025100:intron 35.0%
! AAAAAAATGGTGGGAAGTGT+AGG + chr7_1:55296511-55296530 None:intergenic 35.0%
CAGGAAGAAGAAAAAAATGG+TGG + chr7_1:55296521-55296540 None:intergenic 35.0%
CCAACACAAGTAGATTTCAT+TGG + chr7_1:55296635-55296654 None:intergenic 35.0%
CCAATGAAATCTACTTGTGT+TGG - chr7_1:55296632-55296651 Msa1025100:intron 35.0%
TTGATGTGTTTGTCACTATG+AGG - chr7_1:55296665-55296684 Msa1025100:intron 35.0%
TACACTGAGTTACGGAAAAT+GGG + chr7_1:55296723-55296742 None:intergenic 35.0%
TTACACTGAGTTACGGAAAA+TGG + chr7_1:55296724-55296743 None:intergenic 35.0%
TTTCCGTAACTCAGTGTAAA+AGG - chr7_1:55296725-55296744 Msa1025100:intron 35.0%
TGATACTTTAGATTCCCTGA+AGG - chr7_1:55296895-55296914 Msa1025100:intron 35.0%
GCATTACCAATGTTGCTATA+AGG + chr7_1:55296939-55296958 None:intergenic 35.0%
AAAGTCAAAGGTCTCCAATT+GGG + chr7_1:55296976-55296995 None:intergenic 35.0%
TACTACACGTTACTCAAGAT+TGG - chr7_1:55297049-55297068 Msa1025100:CDS 35.0%
ACTACACGTTACTCAAGATT+GGG - chr7_1:55297050-55297069 Msa1025100:CDS 35.0%
GAACCTTGATTCTTCATTTG+AGG - chr7_1:55297139-55297158 Msa1025100:CDS 35.0%
AATTACATGAACCCCTTTCT+GGG + chr7_1:55297268-55297287 None:intergenic 35.0%
TAATTACATGAACCCCTTTC+TGG + chr7_1:55297269-55297288 None:intergenic 35.0%
TTAAATCTTAACATGCCGTC+AGG + chr7_1:55297322-55297341 None:intergenic 35.0%
AGTAAGTATGAGATGACGAG+AGG - chr7_1:55291099-55291118 Msa1025100:three_prime_UTR 40.0%
!! TTGGTGCGTTTTGATAAACG+GGG + chr7_1:55291163-55291182 None:intergenic 40.0%
GCAACACTGATGTTGATCAT+CGG + chr7_1:55291344-55291363 None:intergenic 40.0%
ATCAACATCAGTGTTGCGTA+TGG - chr7_1:55291347-55291366 Msa1025100:three_prime_UTR 40.0%
GGAGAAGAGAGAAGAAAGAA+GGG + chr7_1:55291989-55292008 None:intergenic 40.0%
GAGAAAAGGGAGAATAGAGA+AGG + chr7_1:55292011-55292030 None:intergenic 40.0%
AGAGAGAGAGAGAGAGAAAA+GGG + chr7_1:55292024-55292043 None:intergenic 40.0%
TTATGAGAGATAGAGAGAGG+GGG + chr7_1:55292216-55292235 None:intergenic 40.0%
CAAACAGACACTAAGTAAGG+GGG + chr7_1:55292513-55292532 None:intergenic 40.0%
CCAAACAGACACTAAGTAAG+GGG + chr7_1:55292514-55292533 None:intergenic 40.0%
AAATGACGCAAAGACACGTT+TGG - chr7_1:55292593-55292612 Msa1025100:intron 40.0%
! GCTGATAAGCTAGCTTATAG+CGG + chr7_1:55292908-55292927 None:intergenic 40.0%
CAAGTAACTAAGGCTCTGTT+TGG + chr7_1:55292950-55292969 None:intergenic 40.0%
CAAACAGAGCCTTAGTTACT+TGG - chr7_1:55292948-55292967 Msa1025100:CDS 40.0%
GAGCCTTAGTTACTTGGATT+AGG - chr7_1:55292954-55292973 Msa1025100:CDS 40.0%
! TTGGATTAGGGTAATGACGA+GGG - chr7_1:55292967-55292986 Msa1025100:CDS 40.0%
AGGGGATTGGATATTGCTTT+AGG - chr7_1:55292986-55293005 Msa1025100:CDS 40.0%
! AGAATGTAAGCTCCCACTTT+TGG - chr7_1:55293045-55293064 Msa1025100:CDS 40.0%
!! GAATGTAAGCTCCCACTTTT+GGG - chr7_1:55293046-55293065 Msa1025100:CDS 40.0%
!! AATGTAAGCTCCCACTTTTG+GGG - chr7_1:55293047-55293066 Msa1025100:CDS 40.0%
ACCGACATTATAGACGAGTT+TGG - chr7_1:55293086-55293105 Msa1025100:intron 40.0%
!!! TATGTTTTTTGGGGTAGCCA+AGG + chr7_1:55293231-55293250 None:intergenic 40.0%
! TTCGGCAACTGAATTTGCTT+GGG + chr7_1:55293318-55293337 None:intergenic 40.0%
! TTTCGGCAACTGAATTTGCT+TGG + chr7_1:55293319-55293338 None:intergenic 40.0%
TATGCAGGGGCCAAATATAA+AGG + chr7_1:55293849-55293868 None:intergenic 40.0%
!! CATCTTGTGTGAGTTGATGT+TGG - chr7_1:55294181-55294200 Msa1025100:intron 40.0%
TAATATCTCGGTGGTTGAGT+TGG - chr7_1:55294230-55294249 Msa1025100:intron 40.0%
!!! TGAGTTGGTTTTTTGAAGGG+TGG - chr7_1:55294245-55294264 Msa1025100:intron 40.0%
! GACTTTGCTGTAGACTGATA+TGG - chr7_1:55294332-55294351 Msa1025100:intron 40.0%
TTCGAACTGAGGTAAACTGT+AGG - chr7_1:55294626-55294645 Msa1025100:intron 40.0%
GAAGAGAATTTGCACATGGA+AGG - chr7_1:55295112-55295131 Msa1025100:intron 40.0%
!! GTCAAAGCTTTTGCTTTTGG+AGG - chr7_1:55295147-55295166 Msa1025100:intron 40.0%
TGACTACAGAGTTGCTTATG+AGG - chr7_1:55295437-55295456 Msa1025100:intron 40.0%
GTTGCTTATGAGGAAATTGC+TGG - chr7_1:55295447-55295466 Msa1025100:intron 40.0%
TAAGTTGCAGAGAAAAGCTG+AGG - chr7_1:55295501-55295520 Msa1025100:intron 40.0%
!! CAAGGAAAACTGCTCTAAAG+AGG + chr7_1:55295730-55295749 None:intergenic 40.0%
! CAGTTTTCCTTGATGCACTA+TGG - chr7_1:55295738-55295757 Msa1025100:intron 40.0%
TATTGAGCCATAGTGCATCA+AGG + chr7_1:55295748-55295767 None:intergenic 40.0%
GCATAGTTCTTTCGGAACTT+CGG - chr7_1:55296044-55296063 Msa1025100:intron 40.0%
ACTTGACCATCAAGAACCAT+TGG + chr7_1:55296201-55296220 None:intergenic 40.0%
! TTCCTGCTTTCAACCTTTTG+AGG - chr7_1:55296276-55296295 Msa1025100:intron 40.0%
! TGTACTGGGATCTAGTTTAC+AGG + chr7_1:55296540-55296559 None:intergenic 40.0%
CTTGAGATGTGTCTGATTAG+CGG - chr7_1:55296573-55296592 Msa1025100:intron 40.0%
AATCTACTTGTGTTGGGAGT+TGG - chr7_1:55296639-55296658 Msa1025100:intron 40.0%
! ATCTTTAAAGGCCTGAACAG+AGG - chr7_1:55296820-55296839 Msa1025100:intron 40.0%
AATGTTGCTATAAGGGTAGG+CGG + chr7_1:55296931-55296950 None:intergenic 40.0%
ACCAATGTTGCTATAAGGGT+AGG + chr7_1:55296934-55296953 None:intergenic 40.0%
CAAAGTCAAAGGTCTCCAAT+TGG + chr7_1:55296977-55296996 None:intergenic 40.0%
! CAATTGGAGACCTTTGACTT+TGG - chr7_1:55296975-55296994 Msa1025100:intron 40.0%
GCTTACCATTCCAAAGTCAA+AGG + chr7_1:55296988-55297007 None:intergenic 40.0%
CTTGAGTAACGTGTAGTAGA+TGG + chr7_1:55297047-55297066 None:intergenic 40.0%
GGTCCTCAAATGAAGAATCA+AGG + chr7_1:55297145-55297164 None:intergenic 40.0%
GGCAAGATCAATACTCACAA+TGG + chr7_1:55297301-55297320 None:intergenic 40.0%
!! TGAGTATTGATCTTGCCTGA+CGG - chr7_1:55297304-55297323 Msa1025100:five_prime_UTR 40.0%
AAGTATGAGATGACGAGAGG+AGG - chr7_1:55291102-55291121 Msa1025100:three_prime_UTR 45.0%
CATTCGATATCCGCCTCATT+CGG + chr7_1:55291254-55291273 None:intergenic 45.0%
GAATGAGGCGGATATCGAAT+GGG - chr7_1:55291253-55291272 Msa1025100:three_prime_UTR 45.0%
GATGTTGATCATCGGTCCAT+CGG + chr7_1:55291336-55291355 None:intergenic 45.0%
GAAGAGAGTCTCACAGAAAG+AGG + chr7_1:55291408-55291427 None:intergenic 45.0%
TTAGGGGGATGTATTGGATC+AGG - chr7_1:55291630-55291649 Msa1025100:intron 45.0%
GGGAGAAGAGAGAAGAAAGA+AGG + chr7_1:55291990-55292009 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAA+AGG + chr7_1:55292025-55292044 None:intergenic 45.0%
AGAGAGAGACGAAGAGAGAA+GGG + chr7_1:55292076-55292095 None:intergenic 45.0%
AAGAGAGAGACGAAGAGAGA+AGG + chr7_1:55292077-55292096 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG + chr7_1:55292102-55292121 None:intergenic 45.0%
TATGAGAGATAGAGAGAGGG+GGG + chr7_1:55292215-55292234 None:intergenic 45.0%
! GTAAGGGGGTGTATTGGATT+AGG + chr7_1:55292499-55292518 None:intergenic 45.0%
! CACTAAGTAAGGGGGTGTAT+TGG + chr7_1:55292505-55292524 None:intergenic 45.0%
CCCCTTACTTAGTGTCTGTT+TGG - chr7_1:55292511-55292530 Msa1025100:intron 45.0%
! CTTGGATTAGGGTAATGACG+AGG - chr7_1:55292966-55292985 Msa1025100:CDS 45.0%
! TGGATTAGGGTAATGACGAG+GGG - chr7_1:55292968-55292987 Msa1025100:CDS 45.0%
!!! CTCCCACTTTTGGGGTTAAA+TGG - chr7_1:55293055-55293074 Msa1025100:CDS 45.0%
TGATTGTCAGAGAGAGCTTC+TGG - chr7_1:55293154-55293173 Msa1025100:intron 45.0%
AAACAGCTTATGACACCTCC+AGG - chr7_1:55293177-55293196 Msa1025100:intron 45.0%
AACAGCTTATGACACCTCCA+GGG - chr7_1:55293178-55293197 Msa1025100:intron 45.0%
! TCGGCAACTGAATTTGCTTG+GGG + chr7_1:55293317-55293336 None:intergenic 45.0%
AACTGAAAAACAGCAGCGCA+TGG + chr7_1:55293903-55293922 None:intergenic 45.0%
! TTTGCACATGGAAGGTGTGA+AGG - chr7_1:55295120-55295139 Msa1025100:intron 45.0%
TTTCAAGCTGTTGCTGCAGT+CGG - chr7_1:55295232-55295251 Msa1025100:intron 45.0%
! AATTTTGCAGGTGTCAGCCT+TGG - chr7_1:55295366-55295385 Msa1025100:intron 45.0%
TATGAGGAAATTGCTGGAGC+TGG - chr7_1:55295453-55295472 Msa1025100:intron 45.0%
CTGGATGGTATTAAGGCTGA+AGG - chr7_1:55295472-55295491 Msa1025100:intron 45.0%
TGGGTCAGAGAACGATAAGT+GGG - chr7_1:55295867-55295886 Msa1025100:intron 45.0%
GACCTCAAAAGGTTGAAAGC+AGG + chr7_1:55296281-55296300 None:intergenic 45.0%
CGCTAATCAGACACATCTCA+AGG + chr7_1:55296575-55296594 None:intergenic 45.0%
AATTCTTGTACTGCTTGCGG+TGG - chr7_1:55296751-55296770 Msa1025100:intron 45.0%
!! TTGCGGTGGACTTCACATTT+TGG - chr7_1:55296765-55296784 Msa1025100:intron 45.0%
ATGTTGCTATAAGGGTAGGC+GGG + chr7_1:55296930-55296949 None:intergenic 45.0%
GCCTACCCTTATAGCAACAT+TGG - chr7_1:55296930-55296949 Msa1025100:intron 45.0%
AGTCTCAGCAACAACCCAAT+TGG - chr7_1:55296959-55296978 Msa1025100:intron 45.0%
! GGAGACCTTTGACTTTGGAA+TGG - chr7_1:55296980-55296999 Msa1025100:intron 45.0%
! TAACGTGTAGTAGATGGTGG+TGG + chr7_1:55297041-55297060 None:intergenic 45.0%
GAGTAACGTGTAGTAGATGG+TGG + chr7_1:55297044-55297063 None:intergenic 45.0%
ACGTTACTCAAGATTGGGAG+CGG - chr7_1:55297055-55297074 Msa1025100:CDS 45.0%
ATAGATACTCTCGCCCAGAA+AGG - chr7_1:55297252-55297271 Msa1025100:five_prime_UTR 45.0%
TAGATACTCTCGCCCAGAAA+GGG - chr7_1:55297253-55297272 Msa1025100:five_prime_UTR 45.0%
GTTTGCTTGATGCTACACTG+TGG + chr7_1:55297371-55297390 None:intergenic 45.0%
!!! TTTAATAAATTAGATTTTTA+TGG - chr7_1:55291858-55291877 Msa1025100:intron 5.0%
!! ATAATACATAATAATAATAT+GGG + chr7_1:55295300-55295319 None:intergenic 5.0%
!! TATAATACATAATAATAATA+TGG + chr7_1:55295301-55295320 None:intergenic 5.0%
ACGGGGAAAGACAAGAGAAG+AGG + chr7_1:55291146-55291165 None:intergenic 50.0%
GAATAAGCGGCGGTGTTCAT+CGG + chr7_1:55291215-55291234 None:intergenic 50.0%
AACACCGCCGCTTATTCTTC+CGG - chr7_1:55291218-55291237 Msa1025100:three_prime_UTR 50.0%
CGAGACACCGGAAGAATAAG+CGG + chr7_1:55291228-55291247 None:intergenic 50.0%
CGAATGAGGCGGATATCGAA+TGG - chr7_1:55291252-55291271 Msa1025100:three_prime_UTR 50.0%
TGTCTGTACGAACATACCGC+CGG + chr7_1:55291288-55291307 None:intergenic 50.0%
TTCGTACAGACACGCGAATC+AGG - chr7_1:55291296-55291315 Msa1025100:three_prime_UTR 50.0%
GGTGACGATGATCATACCGA+TGG - chr7_1:55291317-55291336 Msa1025100:three_prime_UTR 50.0%
AGAGAGGAGGGAGAAAAGAG+AGG + chr7_1:55292047-55292066 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG + chr7_1:55292103-55292122 None:intergenic 50.0%
AAAGGGGAGAGAGAGAGAGA+GGG + chr7_1:55292162-55292181 None:intergenic 50.0%
AAAAGGGGAGAGAGAGAGAG+AGG + chr7_1:55292163-55292182 None:intergenic 50.0%
TAGGGTAATGACGAGGGGAT+TGG - chr7_1:55292973-55292992 Msa1025100:CDS 50.0%
ACAGCTTATGACACCTCCAG+GGG - chr7_1:55293179-55293198 Msa1025100:intron 50.0%
! GCAACTGAATTTGCTTGGGG+TGG + chr7_1:55293314-55293333 None:intergenic 50.0%
!! AATTTTGCTAGCTTCGCCGC+TGG - chr7_1:55293871-55293890 Msa1025100:intron 50.0%
TGAAAAACAGCAGCGCATGG+AGG + chr7_1:55293900-55293919 None:intergenic 50.0%
! AGGTGGACAAGCTTTGTGAC+AGG - chr7_1:55295260-55295279 Msa1025100:intron 50.0%
! GGTGGACAAGCTTTGTGACA+GGG - chr7_1:55295261-55295280 Msa1025100:intron 50.0%
TCCATTGACAGCCACATCCA+AGG + chr7_1:55295386-55295405 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG - chr7_1:55295385-55295404 Msa1025100:intron 50.0%
TGGATGTGGCTGTCAATGGA+GGG - chr7_1:55295386-55295405 Msa1025100:intron 50.0%
AGGAAATTGCTGGAGCTGGA+TGG - chr7_1:55295457-55295476 Msa1025100:intron 50.0%
GCTGGAGCTGGATGGTATTA+AGG - chr7_1:55295465-55295484 Msa1025100:intron 50.0%
CTGGGTCAGAGAACGATAAG+TGG - chr7_1:55295866-55295885 Msa1025100:intron 50.0%
TACACGACGCACCTGTTTGA+AGG + chr7_1:55296864-55296883 None:intergenic 50.0%
!!! GCGGGAGTTTTTTGCCTTCA+GGG + chr7_1:55296912-55296931 None:intergenic 50.0%
! GGTGATGATGACGATGAGGT+TGG + chr7_1:55297020-55297039 None:intergenic 50.0%
! TGGTGGTGATGATGACGATG+AGG + chr7_1:55297024-55297043 None:intergenic 50.0%
AGATACTCTCGCCCAGAAAG+GGG - chr7_1:55297254-55297273 Msa1025100:five_prime_UTR 50.0%
GACACCGGAAGAATAAGCGG+CGG + chr7_1:55291225-55291244 None:intergenic 55.0%
TCGATATCCGCCTCATTCGG+CGG + chr7_1:55291251-55291270 None:intergenic 55.0%
ATCGAATGGGAGATGCGTCC+CGG - chr7_1:55291266-55291285 Msa1025100:three_prime_UTR 55.0%
GTCTGTACGAACATACCGCC+GGG + chr7_1:55291287-55291306 None:intergenic 55.0%
GAAGGGAGAGAGAGAGAGGA+GGG + chr7_1:55292059-55292078 None:intergenic 55.0%
AGAAGGGAGAGAGAGAGAGG+AGG + chr7_1:55292060-55292079 None:intergenic 55.0%
GAGAGAAGGGAGAGAGAGAG+AGG + chr7_1:55292063-55292082 None:intergenic 55.0%
GGAAGAGAGGAGGGAGAGAA+GGG + chr7_1:55292194-55292213 None:intergenic 55.0%
ATAGAGAGAGGGGGGAAGAG+AGG + chr7_1:55292207-55292226 None:intergenic 55.0%
TGTTGCTGCAGTCGGATCAG+AGG - chr7_1:55295240-55295259 Msa1025100:intron 55.0%
GCCTTGGATGTGGCTGTCAA+TGG - chr7_1:55295382-55295401 Msa1025100:intron 55.0%
!!! GGCGGGAGTTTTTTGCCTTC+AGG + chr7_1:55296913-55296932 None:intergenic 55.0%
GGGAGAGAGAGAGAGAGGGA+GGG + chr7_1:55292158-55292177 None:intergenic 60.0%
GGGAAGAGAGGAGGGAGAGA+AGG + chr7_1:55292195-55292214 None:intergenic 60.0%
AGAGAGGGGGGAAGAGAGGA+GGG + chr7_1:55292203-55292222 None:intergenic 60.0%
GCGTAGCCCTTCACTGGCAA+GGG - chr7_1:55293201-55293220 Msa1025100:CDS 60.0%
CGTAGCCCTTCACTGGCAAG+GGG - chr7_1:55293202-55293221 Msa1025100:CDS 60.0%
GGCTACCCCTTGCCAGTGAA+GGG + chr7_1:55293210-55293229 None:intergenic 60.0%
AGGCTACCCCTTGCCAGTGA+AGG + chr7_1:55293211-55293230 None:intergenic 60.0%
TCACTGGCAAGGGGTAGCCT+TGG - chr7_1:55293211-55293230 Msa1025100:CDS 60.0%
TGCTGCAGTCGGATCAGAGG+TGG - chr7_1:55295243-55295262 Msa1025100:intron 60.0%
GCAGGTGTCAGCCTTGGATG+TGG - chr7_1:55295372-55295391 Msa1025100:intron 60.0%
GGCTGTCAATGGAGGGACCA+AGG - chr7_1:55295393-55295412 Msa1025100:intron 60.0%
CTCATTCGGCGGCGAGACAC+CGG + chr7_1:55291240-55291259 None:intergenic 65.0%
TGTCTCGCCGCCGAATGAGG+CGG - chr7_1:55291241-55291260 Msa1025100:three_prime_UTR 65.0%
GAATGGGAGATGCGTCCCGG+CGG - chr7_1:55291269-55291288 Msa1025100:three_prime_UTR 65.0%
GGGGAGAGAGAGAGAGAGGG+AGG + chr7_1:55292159-55292178 None:intergenic 65.0%
GAGAGAGGGGGGAAGAGAGG+AGG + chr7_1:55292204-55292223 None:intergenic 65.0%
GGCGTAGCCCTTCACTGGCA+AGG - chr7_1:55293200-55293219 Msa1025100:CDS 65.0%
!! CAGCGCATGGAGGTGTCCAG+CGG + chr7_1:55293890-55293909 None:intergenic 65.0%
CGGTGTCTCGCCGCCGAATG+AGG - chr7_1:55291238-55291257 Msa1025100:three_prime_UTR 70.0%
GTGAAGGGCTACGCCCCTGG+AGG + chr7_1:55293195-55293214 None:intergenic 70.0%
CCAGTGAAGGGCTACGCCCC+TGG + chr7_1:55293198-55293217 None:intergenic 70.0%
! CCAGGGGCGTAGCCCTTCAC+TGG - chr7_1:55293195-55293214 Msa1025100:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 55291039 55297423 55291039 ID=Msa1025100;Name=Msa1025100
chr7_1 mRNA 55291039 55297423 55291039 ID=Msa1025100-mRNA-1;Parent=Msa1025100;Name=Msa1025100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=176|1|1|1|1|1|4|480|224
chr7_1 exon 55291039 55291590 55291039 ID=Msa1025100-mRNA-1:exon:11064;Parent=Msa1025100-mRNA-1
chr7_1 exon 55292940 55293086 55292940 ID=Msa1025100-mRNA-1:exon:11063;Parent=Msa1025100-mRNA-1
chr7_1 exon 55293180 55293436 55293180 ID=Msa1025100-mRNA-1:exon:11062;Parent=Msa1025100-mRNA-1
chr7_1 exon 55297049 55297423 55297049 ID=Msa1025100-mRNA-1:exon:11061;Parent=Msa1025100-mRNA-1
chr7_1 five_prime_UTR 55297248 55297423 55297248 ID=Msa1025100-mRNA-1:five_prime_utr;Parent=Msa1025100-mRNA-1
chr7_1 CDS 55297049 55297247 55297049 ID=Msa1025100-mRNA-1:cds;Parent=Msa1025100-mRNA-1
chr7_1 CDS 55293180 55293436 55293180 ID=Msa1025100-mRNA-1:cds;Parent=Msa1025100-mRNA-1
chr7_1 CDS 55292940 55293086 55292940 ID=Msa1025100-mRNA-1:cds;Parent=Msa1025100-mRNA-1
chr7_1 CDS 55291519 55291590 55291519 ID=Msa1025100-mRNA-1:cds;Parent=Msa1025100-mRNA-1
chr7_1 three_prime_UTR 55291039 55291518 55291039 ID=Msa1025100-mRNA-1:three_prime_utr;Parent=Msa1025100-mRNA-1
Gene Sequence

>Msa1025100

ATGAACACCGCCGCTTATTCTTCCGGTGTCTCGCCGCCGAATGAGGCGGATATCGAATGGGAGATGCGTCCCGGCGGTATGTTCGTACAGACACGCGAATCAGGTGACGATGATCATACCGATGGACCGATGATCAACATCAGTGTTGCGTATGGTTCTTCTAATCACGAAGTTTATCTTCTAGCTCAATCCTCTTTCTGGGATGTTAAGAAACTGCTTGCACACAAAACTGGTTTAAAGCCTGAACAGCAAATACTCTTCTTTAATGGAAAAGAAAAGGAGAATGAAGAGAATTTGCACATGGAAGGTGTGAAGGACAAGTCAAAGCTTTTGCTTTTGGAGGATGCCGCTAGCAAAGAGAGTAATCTTGAGGAAGTAAGAAAACAAAATGAAATGCTAAAAGCTTTTCAAGCTGTTGCTGCAGTCGGATCAGAGGTGGACAAGCTTTGTGACAGGGTGTCAGCCTTGGATGTGGCTGTCAATGGAGGGACCAAGGTTTCTGACAAAGAATTTGTTGTGACTACAGAGTTGCTTATGAGGAAATTGCTGGAGCTGGATGGTATTAAGGCTGAAGGTGAAGCTAAGTTGCAGAGAAAAGCTGAGGTGCGTCGTGTACAGAACGCTGTTGATACTTTAGATTCCCTGAAGGCAAAAAACTCCCGCCTACCCTTATAG
Protein sequence

>Msa1025100

MNTAAYSSGVSPPNEADIEWEMRPGGMFVQTRESGDDDHTDGPMINISVAYGSSNHEVYLLAQSSFWDVKKLLAHKTGLKPEQQILFFNGKEKENEENLHMEGVKDKSKLLLLEDAASKESNLEEVRKQNEMLKAFQAVAAVGSEVDKLCDRVSALDVAVNGGTKVSDKEFVVTTELLMRKLLELDGIKAEGEAKLQRKAEVRRVQNAVDTLDSLKAKNSRLPL*