Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452980 | XP_003600052.1 | 95.960 | 495 | 13 | 1 | 1 | 488 | 1 | 495 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452980 | sp|Q8RWQ5|FBT4_ARATH | 64.242 | 495 | 165 | 3 | 1 | 488 | 1 | 490 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452980 | G7IXK2 | 95.960 | 495 | 13 | 1 | 1 | 488 | 1 | 495 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043500 | Msa0452980 | 0.803895 | 2.801511e-49 | -8.615850e-47 |
| Msa0081650 | Msa0452980 | 0.816393 | 5.658564e-52 | -8.615850e-47 |
| Msa0138020 | Msa0452980 | 0.800723 | 1.260833e-48 | -8.615850e-47 |
| Msa0225670 | Msa0452980 | 0.808008 | 3.823910e-50 | -8.615850e-47 |
| Msa0382400 | Msa0452980 | 0.830087 | 3.577220e-55 | -8.615850e-47 |
| Msa0391400 | Msa0452980 | 0.823740 | 1.177062e-53 | -8.615850e-47 |
| Msa0408300 | Msa0452980 | 0.829506 | 4.955135e-55 | -8.615850e-47 |
| Msa0432130 | Msa0452980 | 0.809006 | 2.341283e-50 | -8.615850e-47 |
| Msa0452980 | Msa0476640 | 0.809172 | 2.157647e-50 | -8.615850e-47 |
| Msa0452980 | Msa0495360 | 0.851443 | 8.847991e-61 | -8.615850e-47 |
| Msa0452980 | Msa0779260 | 0.807386 | 5.185682e-50 | -8.615850e-47 |
| Msa0452980 | Msa0880810 | 0.810132 | 1.342112e-50 | -8.615850e-47 |
| Msa0452980 | Msa1218580 | 0.809014 | 2.332854e-50 | -8.615850e-47 |
| Msa0452980 | Msa1436600 | 0.810656 | 1.034007e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452980 | MtrunA17_Chr3g0098661 | 95.960 | 495 | 13 | 1 | 1 | 488 | 1 | 495 | 0.0 | 952 |
| Msa0452980 | MtrunA17_Chr3g0079271 | 30.172 | 464 | 259 | 4 | 24 | 480 | 109 | 514 | 2.59e-54 | 191 |
| Msa0452980 | MtrunA17_Chr2g0293351 | 28.025 | 471 | 259 | 8 | 26 | 481 | 33 | 438 | 5.88e-51 | 179 |
| Msa0452980 | MtrunA17_Chr1g0205221 | 29.747 | 474 | 262 | 10 | 6 | 469 | 99 | 511 | 1.23e-48 | 175 |
| Msa0452980 | MtrunA17_Chr2g0293361 | 32.857 | 210 | 134 | 1 | 279 | 481 | 34 | 243 | 1.08e-29 | 116 |
| Msa0452980 | MtrunA17_Chr2g0293371 | 31.905 | 210 | 136 | 1 | 279 | 481 | 139 | 348 | 1.47e-26 | 110 |
| Msa0452980 | MtrunA17_Chr1g0150001 | 28.054 | 221 | 143 | 5 | 276 | 481 | 243 | 462 | 3.11e-18 | 87.4 |
| Msa0452980 | MtrunA17_Chr1g0150001 | 29.070 | 172 | 113 | 3 | 39 | 207 | 75 | 240 | 4.43e-14 | 74.3 |
| Msa0452980 | MtrunA17_Chr1g0150031 | 30.000 | 160 | 105 | 2 | 329 | 481 | 3 | 162 | 1.17e-17 | 81.3 |
| Msa0452980 | MtrunA17_Chr1g0150041 | 27.094 | 203 | 109 | 4 | 2 | 202 | 28 | 193 | 8.08e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452980 | AT5G54860.1 | 64.242 | 495 | 165 | 3 | 1 | 488 | 1 | 490 | 0.0 | 636 |
| Msa0452980 | AT2G33280.1 | 29.832 | 476 | 266 | 8 | 19 | 485 | 86 | 502 | 3.10e-45 | 166 |
| Msa0452980 | AT2G32040.2 | 29.670 | 455 | 254 | 9 | 22 | 469 | 1 | 396 | 4.58e-44 | 160 |
| Msa0452980 | AT2G32040.1 | 29.322 | 457 | 257 | 9 | 20 | 469 | 130 | 527 | 4.54e-43 | 160 |
| Msa0452980 | AT2G33280.3 | 29.399 | 449 | 250 | 7 | 45 | 485 | 5 | 394 | 5.41e-39 | 147 |
| Msa0452980 | AT1G79710.2 | 24.798 | 496 | 288 | 13 | 2 | 481 | 35 | 461 | 1.33e-34 | 136 |
| Msa0452980 | AT1G79710.1 | 24.798 | 496 | 288 | 13 | 2 | 481 | 35 | 461 | 1.33e-34 | 136 |
| Msa0452980 | AT5G10820.1 | 25.102 | 490 | 293 | 10 | 3 | 480 | 44 | 471 | 3.17e-31 | 126 |
| Msa0452980 | AT1G04570.2 | 32.547 | 212 | 136 | 1 | 276 | 480 | 137 | 348 | 1.50e-28 | 117 |
| Msa0452980 | AT1G04570.1 | 32.547 | 212 | 136 | 1 | 276 | 480 | 285 | 496 | 1.22e-27 | 116 |
| Msa0452980 | AT1G04570.1 | 32.624 | 141 | 94 | 1 | 3 | 142 | 74 | 214 | 8.06e-16 | 80.5 |
| Msa0452980 | AT2G33280.2 | 28.232 | 379 | 205 | 7 | 115 | 485 | 1 | 320 | 4.66e-25 | 106 |
| Msa0452980 | AT1G64890.1 | 33.019 | 212 | 135 | 2 | 279 | 483 | 221 | 432 | 3.86e-24 | 105 |
| Msa0452980 | AT1G64890.1 | 33.158 | 190 | 126 | 1 | 18 | 206 | 21 | 210 | 1.74e-22 | 100 |
| Msa0452980 | AT5G25040.5 | 26.047 | 215 | 149 | 3 | 277 | 481 | 94 | 308 | 3.04e-19 | 89.4 |
| Msa0452980 | AT1G79710.3 | 21.531 | 418 | 250 | 11 | 2 | 410 | 35 | 383 | 6.63e-19 | 89.0 |
| Msa0452980 | AT5G25040.4 | 26.047 | 215 | 149 | 3 | 277 | 481 | 241 | 455 | 8.84e-19 | 89.4 |
| Msa0452980 | AT5G25040.4 | 29.381 | 194 | 121 | 7 | 2 | 187 | 31 | 216 | 2.04e-12 | 69.7 |
| Msa0452980 | AT5G25040.2 | 30.380 | 158 | 103 | 2 | 331 | 481 | 323 | 480 | 6.93e-18 | 86.7 |
| Msa0452980 | AT5G25040.2 | 30.726 | 179 | 108 | 7 | 2 | 172 | 31 | 201 | 2.01e-12 | 69.7 |
| Msa0452980 | AT5G25050.1 | 31.414 | 191 | 120 | 5 | 2 | 187 | 31 | 215 | 5.41e-17 | 84.0 |
| Msa0452980 | AT5G25050.1 | 25.455 | 220 | 150 | 3 | 276 | 481 | 238 | 457 | 7.87e-17 | 83.6 |
| Msa0452980 | AT5G25040.1 | 29.381 | 194 | 121 | 7 | 2 | 187 | 31 | 216 | 1.85e-12 | 69.7 |
| Msa0452980 | AT5G25040.1 | 24.590 | 183 | 128 | 3 | 277 | 449 | 241 | 423 | 7.33e-11 | 64.7 |
| Msa0452980 | AT5G25040.3 | 30.726 | 179 | 108 | 7 | 2 | 172 | 31 | 201 | 2.17e-12 | 68.9 |
Find 109 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATTGTATCCCGATTAA+AGG | 0.188248 | 3_3:+42908268 | Msa0452980:CDS |
| ATGCAACTGAAAACACAAAT+TGG | 0.197963 | 3_3:-42907204 | None:intergenic |
| TGGAGCATTAAACCATTATA+TGG | 0.207249 | 3_3:+42907235 | Msa0452980:CDS |
| TTGGAGGTCTCCTGCAAATT+TGG | 0.211585 | 3_3:-42909079 | None:intergenic |
| GATGCACCTGTTGCTTCTTT+TGG | 0.267349 | 3_3:-42911726 | None:intergenic |
| ATCCGTTTACTTCCTTTAAT+CGG | 0.280491 | 3_3:-42908280 | None:intergenic |
| CTCCAGAATCTTCGATTTGC+TGG | 0.283430 | 3_3:-42909421 | None:intergenic |
| TTTGGCTCGGCACTTGTTGA+TGG | 0.295783 | 3_3:+42910546 | Msa0452980:CDS |
| TTCTAAGCGTCATATGCTTT+AGG | 0.310369 | 3_3:-42910332 | None:intergenic |
| ATTGATTCATACCCATATAA+TGG | 0.311735 | 3_3:-42907247 | None:intergenic |
| AAGATTATCTTTAAGTTGAT+AGG | 0.318713 | 3_3:-42907161 | None:intergenic |
| TTGGTCAGGGCCAAATTTGC+AGG | 0.328122 | 3_3:+42909069 | Msa0452980:intron |
| GGAATATGCGGGAGTTTGTT+AGG | 0.329268 | 3_3:+42909132 | Msa0452980:CDS |
| AATCGGTTGAATGCTGCATT+TGG | 0.334076 | 3_3:+42906560 | Msa0452980:CDS |
| ATCATAAATTGCTTTCTTCA+AGG | 0.337183 | 3_3:-42909478 | None:intergenic |
| TACCAGCAAATCGAAGATTC+TGG | 0.353963 | 3_3:+42909419 | Msa0452980:CDS |
| TCGCCTTTGGTGTACCAGAT+AGG | 0.358572 | 3_3:+42910511 | Msa0452980:CDS |
| GATAGGGTTATGGTGCTCTT+TGG | 0.362387 | 3_3:+42910528 | Msa0452980:CDS |
| GAATAAGACTGTTGAAAGAT+TGG | 0.368387 | 3_3:-42910205 | None:intergenic |
| AAAGCTCGAAGCATCATTCT+TGG | 0.370525 | 3_3:+42910248 | Msa0452980:CDS |
| TCTATATTGAACATAGATTC+AGG | 0.374425 | 3_3:+42911624 | Msa0452980:CDS |
| ATTGGTTACCTCAAAATCAT+TGG | 0.394424 | 3_3:-42909522 | None:intergenic |
| TCCGTTTACTTCCTTTAATC+GGG | 0.395107 | 3_3:-42908279 | None:intergenic |
| AAGTAAACGGATTTCGTACT+TGG | 0.400717 | 3_3:+42908291 | Msa0452980:CDS |
| CATTCAACCGATTCGTCCAT+TGG | 0.412337 | 3_3:-42906550 | None:intergenic |
| AAGAGCACCATAACCCTATC+TGG | 0.416214 | 3_3:-42910525 | None:intergenic |
| ATCTTGGTCTTCAATGGCTG+TGG | 0.416452 | 3_3:+42909107 | Msa0452980:CDS |
| GAATATGCGGGAGTTTGTTA+GGG | 0.418448 | 3_3:+42909133 | Msa0452980:CDS |
| AAGCTCGAAGCATCATTCTT+GGG | 0.419923 | 3_3:+42910249 | Msa0452980:CDS |
| ATCGGTTGAATGCTGCATTT+GGG | 0.421182 | 3_3:+42906561 | Msa0452980:CDS |
| GTACGCGTTGTTGGTTGGTT+AGG | 0.423916 | 3_3:+42910276 | Msa0452980:CDS |
| CATATTGTCGAAACCGTTAG+AGG | 0.425245 | 3_3:+42906404 | None:intergenic |
| TTGGGGACGGTACGCGTTGT+TGG | 0.428599 | 3_3:+42910267 | Msa0452980:CDS |
| TGGTGTACCAGATAGGGTTA+TGG | 0.430972 | 3_3:+42910518 | Msa0452980:CDS |
| GCAAAGGATTTGCATACAAA+TGG | 0.433365 | 3_3:+42909291 | Msa0452980:CDS |
| ATCAGAAACAGAAAAGCAAT+TGG | 0.433826 | 3_3:-42911702 | None:intergenic |
| GAGACCTCCAATCGTTATCT+TGG | 0.445839 | 3_3:+42909091 | Msa0452980:CDS |
| ATCGTTATCTTGGTCTTCAA+TGG | 0.449351 | 3_3:+42909101 | Msa0452980:CDS |
| AATAAGACTGTTGAAAGATT+GGG | 0.450409 | 3_3:-42910204 | None:intergenic |
| CTGTGCTCTCCCTTGTACCA+TGG | 0.460291 | 3_3:+42908323 | Msa0452980:CDS |
| GGAGCATTAAACCATTATAT+GGG | 0.461331 | 3_3:+42907236 | Msa0452980:CDS |
| CTATGCCCTCCAGGAATTGA+AGG | 0.462869 | 3_3:+42911525 | Msa0452980:intron |
| CGCCTTTGGTGTACCAGATA+GGG | 0.464246 | 3_3:+42910512 | Msa0452980:CDS |
| TTTCATGTCAATAAACAACT+TGG | 0.464904 | 3_3:+42911563 | Msa0452980:CDS |
| TGCAACTGAAAACACAAATT+GGG | 0.466177 | 3_3:-42907203 | None:intergenic |
| CACTAAGAACACAGAGAAAG+AGG | 0.474356 | 3_3:+42906491 | Msa0452980:five_prime_UTR |
| TGGAGGACAGACCTATGTCT+TGG | 0.476709 | 3_3:+42910157 | Msa0452980:intron |
| TTCTTGACTGTGCAAAACTT+AGG | 0.479731 | 3_3:+42908400 | Msa0452980:CDS |
| TCCCGATTAAAGGAAGTAAA+CGG | 0.487254 | 3_3:+42908278 | Msa0452980:CDS |
| CAATGATCCAATGGACGAAT+CGG | 0.489067 | 3_3:+42906543 | Msa0452980:exon |
| TCTGGAGAAAGGAGATTCCT+TGG | 0.489789 | 3_3:+42909437 | Msa0452980:CDS |
| CTAAAATAAACCATGGTACA+AGG | 0.490097 | 3_3:-42908333 | None:intergenic |
| CTGATACCAAAAGAAGCAAC+AGG | 0.498367 | 3_3:+42911720 | Msa0452980:CDS |
| GGTTATGGTGCTCTTTGGCT+CGG | 0.505871 | 3_3:+42910533 | Msa0452980:CDS |
| TCTTGGTCTTCAATGGCTGT+GGG | 0.509990 | 3_3:+42909108 | Msa0452980:CDS |
| CAGGTATGCTCATGTTGCGT+TGG | 0.512392 | 3_3:+42910443 | Msa0452980:intron |
| AGTTTCAGCTTTCCCTCTAA+CGG | 0.515212 | 3_3:-42906417 | None:intergenic |
| AACAACTTGGGAACAACGAT+AGG | 0.523273 | 3_3:+42911576 | Msa0452980:CDS |
| TGCAGATTGCCGTTGTGTCT+AGG | 0.528098 | 3_3:+42910481 | Msa0452980:CDS |
| GGACGGTACGCGTTGTTGGT+TGG | 0.528967 | 3_3:+42910271 | Msa0452980:CDS |
| TTCATGTCAATAAACAACTT+GGG | 0.529203 | 3_3:+42911564 | Msa0452980:CDS |
| AAATCGAAGATTCTGGAGAA+AGG | 0.536470 | 3_3:+42909426 | Msa0452980:CDS |
| TTGAAGACCAAGATAACGAT+TGG | 0.540367 | 3_3:-42909098 | None:intergenic |
| AGTTGAGGATTATATTGCAA+AGG | 0.550493 | 3_3:+42909275 | Msa0452980:CDS |
| CTTGTCATATCTTACAGCCT+CGG | 0.554473 | 3_3:-42908461 | None:intergenic |
| GCGTCATATGCTTTAGGTGA+CGG | 0.557890 | 3_3:-42910326 | None:intergenic |
| AGTCTTATTCTACTACGAAA+CGG | 0.561877 | 3_3:+42910218 | Msa0452980:CDS |
| AAATTGCTTTCTTCAAGGAA+CGG | 0.565734 | 3_3:-42909473 | None:intergenic |
| GCACAGTCAAGAATACCATC+AGG | 0.566177 | 3_3:-42908390 | None:intergenic |
| AGTAGTACGCTGGATGAAGA+TGG | 0.570136 | 3_3:+42909318 | Msa0452980:CDS |
| CATGACAATAACTGTATGCA+AGG | 0.574447 | 3_3:-42909213 | None:intergenic |
| ACGGAACCACTTTGTTGCCA+AGG | 0.579684 | 3_3:-42909454 | None:intergenic |
| TATAATGGTTTAATGCTCCA+AGG | 0.583841 | 3_3:-42907232 | None:intergenic |
| TTGGGTTAACAATGATCCAA+TGG | 0.584964 | 3_3:+42906534 | Msa0452980:exon |
| AATATGCGGGAGTTTGTTAG+GGG | 0.585466 | 3_3:+42909134 | Msa0452980:CDS |
| AAAGATTGGGAACAGTAATG+TGG | 0.587892 | 3_3:-42910191 | None:intergenic |
| AAACACAAATTGGGAAGCTG+AGG | 0.590346 | 3_3:-42907194 | None:intergenic |
| GGTTGGTTAGGACTTATGCT+CGG | 0.594212 | 3_3:+42910288 | Msa0452980:CDS |
| TGGGAACAGTAATGTGGGCA+AGG | 0.597103 | 3_3:-42910185 | None:intergenic |
| ACAACTTGGGAACAACGATA+GGG | 0.598636 | 3_3:+42911577 | Msa0452980:CDS |
| AAGACCAAGATAACGATTGG+AGG | 0.600085 | 3_3:-42909095 | None:intergenic |
| GAATTCAACATGGCACCTGA+TGG | 0.602006 | 3_3:+42908375 | Msa0452980:CDS |
| AGCTCGAAGCATCATTCTTG+GGG | 0.605840 | 3_3:+42910250 | Msa0452980:CDS |
| ATCAACAACAACATCTGCCA+TGG | 0.606162 | 3_3:-42908428 | None:intergenic |
| CGAAGCATCATTCTTGGGGA+CGG | 0.607115 | 3_3:+42910254 | Msa0452980:CDS |
| ATGGCTGTGGGAGGAATATG+CGG | 0.607957 | 3_3:+42909120 | Msa0452980:CDS |
| TAAAATAAACCATGGTACAA+GGG | 0.610741 | 3_3:-42908332 | None:intergenic |
| AAGATTGGGAACAGTAATGT+GGG | 0.612894 | 3_3:-42910190 | None:intergenic |
| CAACCTTGAGGAATTCAACA+TGG | 0.615312 | 3_3:+42908365 | Msa0452980:CDS |
| TTGCTTGATTTACTTCACCC+AGG | 0.615539 | 3_3:+42906604 | Msa0452980:CDS |
| ACTAAGAACACAGAGAAAGA+GGG | 0.617501 | 3_3:+42906492 | Msa0452980:five_prime_UTR |
| TGGTCTTCAATGGCTGTGGG+AGG | 0.618541 | 3_3:+42909111 | Msa0452980:CDS |
| GTGCCATGTTGAATTCCTCA+AGG | 0.618903 | 3_3:-42908368 | None:intergenic |
| AAATGGTAGTAGTAGTACGC+TGG | 0.623642 | 3_3:+42909308 | Msa0452980:CDS |
| CTTAAACCTAAAATAAACCA+TGG | 0.629672 | 3_3:-42908340 | None:intergenic |
| TAGGTGACGGTTATAAACGA+AGG | 0.632468 | 3_3:-42910313 | None:intergenic |
| GAGATTCCTTGGCAACAAAG+TGG | 0.632737 | 3_3:+42909448 | Msa0452980:CDS |
| AACCCTATCTGGTACACCAA+AGG | 0.632946 | 3_3:-42910514 | None:intergenic |
| ATATTGTCGAAACCGTTAGA+GGG | 0.633089 | 3_3:+42906405 | None:intergenic |
| TAGGTTTAAGTTCAACCTTG+AGG | 0.633543 | 3_3:+42908353 | Msa0452980:CDS |
| TGGCTGTGGGAGGAATATGC+GGG | 0.640200 | 3_3:+42909121 | Msa0452980:CDS |
| TAAAACTTCGCTATTTACAG+AGG | 0.655075 | 3_3:-42909253 | None:intergenic |
| AACACAAATTGGGAAGCTGA+GGG | 0.655369 | 3_3:-42907193 | None:intergenic |
| AAGCATGTGTATGGTACGAG+AGG | 0.660618 | 3_3:+42910631 | Msa0452980:intron |
| AATCTGCAGAAGATTCAAGA+AGG | 0.662867 | 3_3:-42910466 | None:intergenic |
| GCAAAACTTAGGATCAGCCA+TGG | 0.664884 | 3_3:+42908411 | Msa0452980:CDS |
| CTTATTCTACTACGAAACGG+AGG | 0.704156 | 3_3:+42910221 | Msa0452980:CDS |
| TGTTGATGCGATGATAGCCG+AGG | 0.715574 | 3_3:+42908444 | Msa0452980:CDS |
| ATATGCGGGAGTTTGTTAGG+GGG | 0.728603 | 3_3:+42909135 | Msa0452980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATAATTATATATGAA+TGG | - | chr3_3:42909637-42909656 | None:intergenic | 10.0% |
| !!! | TTTTTGTAAGTTAAAATAAT+TGG | - | chr3_3:42909886-42909905 | None:intergenic | 10.0% |
| !!! | AAACTATAATGTTTTATATA+GGG | + | chr3_3:42911005-42911024 | Msa0452980:intron | 10.0% |
| !!! | TTTCAAAAAAGTGAAATTTT+TGG | + | chr3_3:42906515-42906534 | Msa0452980:five_prime_UTR | 15.0% |
| !!! | TTCAAAAAAGTGAAATTTTT+GGG | + | chr3_3:42906516-42906535 | Msa0452980:five_prime_UTR | 15.0% |
| !! | ATATGAAAAGAACAAAAATA+AGG | + | chr3_3:42907998-42908017 | Msa0452980:intron | 15.0% |
| !!! | AAAGTAGATATTTGAAATTT+TGG | + | chr3_3:42909549-42909568 | Msa0452980:intron | 15.0% |
| !! | ACTAATAAAAAGTAATGTTT+CGG | + | chr3_3:42909976-42909995 | Msa0452980:intron | 15.0% |
| !! | AAAAAAAATACTATCTTTCA+GGG | - | chr3_3:42910801-42910820 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACTATCTTTC+AGG | - | chr3_3:42910802-42910821 | None:intergenic | 15.0% |
| !!! | ATAGTATTTTTTTTTGCTTA+TGG | + | chr3_3:42910807-42910826 | Msa0452980:intron | 15.0% |
| !!! | CAAACTATAATGTTTTATAT+AGG | + | chr3_3:42911004-42911023 | Msa0452980:intron | 15.0% |
| !!! | ATCTGGTAGTTTTATTTATT+GGG | + | chr3_3:42906713-42906732 | Msa0452980:intron | 20.0% |
| !!! | AAGATTATCTTTAAGTTGAT+AGG | - | chr3_3:42907164-42907183 | None:intergenic | 20.0% |
| !! | TTGATCTATCAACTAAAATA+AGG | - | chr3_3:42908663-42908682 | None:intergenic | 20.0% |
| !! | AGAAATATATCCATCATAAA+AGG | - | chr3_3:42908698-42908717 | None:intergenic | 20.0% |
| !! | AATACTTAATCATAGAGAAT+AGG | - | chr3_3:42909042-42909061 | None:intergenic | 20.0% |
| !! | CAAATATCTACTTTAATGAT+TGG | - | chr3_3:42909543-42909562 | None:intergenic | 20.0% |
| !!! | CTGTTTACTTTTTAAGATTA+TGG | + | chr3_3:42909572-42909591 | Msa0452980:intron | 20.0% |
| !!! | ATGGAGATTATCTTTTTAAT+TGG | - | chr3_3:42909846-42909865 | None:intergenic | 20.0% |
| !!! | TATGTTCTTCTTTTTATTAC+AGG | + | chr3_3:42910424-42910443 | Msa0452980:intron | 20.0% |
| !!! | AAAAGATGATATCTTCATTT+TGG | + | chr3_3:42910702-42910721 | Msa0452980:intron | 20.0% |
| !!! | GATCTGGTAGTTTTATTTAT+TGG | + | chr3_3:42906712-42906731 | Msa0452980:intron | 25.0% |
| !! | ATTGATTCATACCCATATAA+TGG | - | chr3_3:42907250-42907269 | None:intergenic | 25.0% |
| ! | ATCCAATACATGATAATTGA+GGG | - | chr3_3:42907280-42907299 | None:intergenic | 25.0% |
| ! | AATCCAATACATGATAATTG+AGG | - | chr3_3:42907281-42907300 | None:intergenic | 25.0% |
| ! | TATCATGTATTGGATTTAGT+TGG | + | chr3_3:42907285-42907304 | Msa0452980:intron | 25.0% |
| ! | TTAGAAGTTAAATATGCGAT+TGG | + | chr3_3:42907398-42907417 | Msa0452980:intron | 25.0% |
| !! | TTTTCTAAGCTACATAACAT+AGG | - | chr3_3:42907612-42907631 | None:intergenic | 25.0% |
| ! | ATATTTGAGAATATAAGAGG+AGG | - | chr3_3:42907753-42907772 | None:intergenic | 25.0% |
| ! | GACATATTTGAGAATATAAG+AGG | - | chr3_3:42907756-42907775 | None:intergenic | 25.0% |
| !! | CTTTTCATATCTCAAATGAT+GGG | - | chr3_3:42907988-42908007 | None:intergenic | 25.0% |
| !! | TCTTTTCATATCTCAAATGA+TGG | - | chr3_3:42907989-42908008 | None:intergenic | 25.0% |
| !! | TGTTTTCAACACATATTAGT+CGG | - | chr3_3:42908132-42908151 | None:intergenic | 25.0% |
| ! | CAAACATATACATGTAAACA+CGG | - | chr3_3:42908183-42908202 | None:intergenic | 25.0% |
| ! | ATTAACCAAACCAGAATATA+AGG | - | chr3_3:42908232-42908251 | None:intergenic | 25.0% |
| ! | TAAAATAAACCATGGTACAA+GGG | - | chr3_3:42908335-42908354 | None:intergenic | 25.0% |
| ! | CTTAAACCTAAAATAAACCA+TGG | - | chr3_3:42908343-42908362 | None:intergenic | 25.0% |
| ! | TCAATATGCACAATGAAATT+AGG | - | chr3_3:42908506-42908525 | None:intergenic | 25.0% |
| ! | GCTTATAGATTATACGAAAA+CGG | + | chr3_3:42908941-42908960 | Msa0452980:intron | 25.0% |
| ! | TGATTAAGTATTTGCTTTGT+TGG | + | chr3_3:42909050-42909069 | Msa0452980:intron | 25.0% |
| ! | TAGTACAAGAAAAAGAAAGA+AGG | + | chr3_3:42909365-42909384 | Msa0452980:CDS | 25.0% |
| ! | AGTACAAGAAAAAGAAAGAA+GGG | + | chr3_3:42909366-42909385 | Msa0452980:CDS | 25.0% |
| ! | ATCATAAATTGCTTTCTTCA+AGG | - | chr3_3:42909481-42909500 | None:intergenic | 25.0% |
| !!! | TCCAATGTTTGTGTTTTTAT+CGG | + | chr3_3:42909761-42909780 | Msa0452980:intron | 25.0% |
| !!! | CTTTTTAATTGGCTGAAAAT+TGG | - | chr3_3:42909835-42909854 | None:intergenic | 25.0% |
| ! | AATAATTGGCCATAATGTAA+AGG | - | chr3_3:42909872-42909891 | None:intergenic | 25.0% |
| ! | AAAATTGTGATCACATAAGT+TGG | + | chr3_3:42909904-42909923 | Msa0452980:intron | 25.0% |
| ! | TTCAAATACATTATCTACCA+AGG | + | chr3_3:42909948-42909967 | Msa0452980:intron | 25.0% |
| ! | TCAAATACATTATCTACCAA+GGG | + | chr3_3:42909949-42909968 | Msa0452980:intron | 25.0% |
| ! | AATAAGACTGTTGAAAGATT+GGG | - | chr3_3:42910207-42910226 | None:intergenic | 25.0% |
| ! | TAAAGGGACTAATTCAATAT+GGG | - | chr3_3:42910871-42910890 | None:intergenic | 25.0% |
| ! | TTAAAGGGACTAATTCAATA+TGG | - | chr3_3:42910872-42910891 | None:intergenic | 25.0% |
| !! | ACCGAAAAAGTGTATATTAA+AGG | + | chr3_3:42911034-42911053 | Msa0452980:intron | 25.0% |
| !!! | CCCTTTAATATACACTTTTT+CGG | - | chr3_3:42911038-42911057 | None:intergenic | 25.0% |
| !! | CCGAAAAAGTGTATATTAAA+GGG | + | chr3_3:42911035-42911054 | Msa0452980:intron | 25.0% |
| ! | TGAAGCATAATGATTTGATA+TGG | + | chr3_3:42911175-42911194 | Msa0452980:intron | 25.0% |
| ! | AAGGATGTAACACAAAAAAA+TGG | - | chr3_3:42911202-42911221 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTGTTACATCCT+TGG | + | chr3_3:42911201-42911220 | Msa0452980:intron | 25.0% |
| ! | TTTCATGTCAATAAACAACT+TGG | + | chr3_3:42911563-42911582 | Msa0452980:CDS | 25.0% |
| ! | TTCATGTCAATAAACAACTT+GGG | + | chr3_3:42911564-42911583 | Msa0452980:CDS | 25.0% |
| ! | TCTATATTGAACATAGATTC+AGG | + | chr3_3:42911624-42911643 | Msa0452980:CDS | 25.0% |
| !! | CATTTGGGTTTTCATTTCTT+TGG | + | chr3_3:42906576-42906595 | Msa0452980:CDS | 30.0% |
| TCTTTGTGTGAGATTATTGA+TGG | + | chr3_3:42906670-42906689 | Msa0452980:intron | 30.0% | |
| CTTTGTGTGAGATTATTGAT+GGG | + | chr3_3:42906671-42906690 | Msa0452980:intron | 30.0% | |
| !!! | TTTGTTTTTCCTTTGAGATC+TGG | + | chr3_3:42906696-42906715 | Msa0452980:intron | 30.0% |
| ATAAAACTACCAGATCTCAA+AGG | - | chr3_3:42906708-42906727 | None:intergenic | 30.0% | |
| TTGAATGTAATCACAAGTGT+TGG | + | chr3_3:42906903-42906922 | Msa0452980:intron | 30.0% | |
| GAAACTTCTAATTACTTGTC+CGG | - | chr3_3:42906966-42906985 | None:intergenic | 30.0% | |
| GGACAAGTAATTAGAAGTTT+CGG | + | chr3_3:42906965-42906984 | Msa0452980:intron | 30.0% | |
| ! | ATTAAGAACTGTATTGATGC+AGG | + | chr3_3:42907108-42907127 | Msa0452980:intron | 30.0% |
| ! | TTAAGAACTGTATTGATGCA+GGG | + | chr3_3:42907109-42907128 | Msa0452980:intron | 30.0% |
| TGCAACTGAAAACACAAATT+GGG | - | chr3_3:42907206-42907225 | None:intergenic | 30.0% | |
| ATGCAACTGAAAACACAAAT+TGG | - | chr3_3:42907207-42907226 | None:intergenic | 30.0% | |
| !!! | TTTCAGTTGCATTTTTTCCT+TGG | + | chr3_3:42907215-42907234 | Msa0452980:CDS | 30.0% |
| TATAATGGTTTAATGCTCCA+AGG | - | chr3_3:42907235-42907254 | None:intergenic | 30.0% | |
| ! | TGGAGCATTAAACCATTATA+TGG | + | chr3_3:42907235-42907254 | Msa0452980:CDS | 30.0% |
| ! | GGAGCATTAAACCATTATAT+GGG | + | chr3_3:42907236-42907255 | Msa0452980:CDS | 30.0% |
| TCCAATACATGATAATTGAG+GGG | - | chr3_3:42907279-42907298 | None:intergenic | 30.0% | |
| GTAGAGATACTTAAGATAGA+TGG | + | chr3_3:42907492-42907511 | Msa0452980:intron | 30.0% | |
| TGTAGCTTAGAAAACTAGAA+CGG | + | chr3_3:42907618-42907637 | Msa0452980:intron | 30.0% | |
| !! | TTTACTGGAAGCATACTTTT+AGG | - | chr3_3:42907789-42907808 | None:intergenic | 30.0% |
| AAAGTATGCTTCCAGTAAAA+CGG | + | chr3_3:42907790-42907809 | Msa0452980:intron | 30.0% | |
| AGCAATCGTCTAATTAGAAA+GGG | + | chr3_3:42907824-42907843 | Msa0452980:intron | 30.0% | |
| ! | AATTAGAAAGGGAAAGTACA+AGG | + | chr3_3:42907835-42907854 | Msa0452980:intron | 30.0% |
| !! | GATTTACTTTTCTCTGTCAT+TGG | + | chr3_3:42907925-42907944 | Msa0452980:intron | 30.0% |
| CAAAAATAAGGCATGAAAGA+AGG | + | chr3_3:42908010-42908029 | Msa0452980:intron | 30.0% | |
| AATATGTGTTGAAAACAGCA+AGG | + | chr3_3:42908135-42908154 | Msa0452980:intron | 30.0% | |
| ATCCGTTTACTTCCTTTAAT+CGG | - | chr3_3:42908283-42908302 | None:intergenic | 30.0% | |
| CTAAAATAAACCATGGTACA+AGG | - | chr3_3:42908336-42908355 | None:intergenic | 30.0% | |
| !! | CTTGTACCATGGTTTATTTT+AGG | + | chr3_3:42908334-42908353 | Msa0452980:CDS | 30.0% |
| ! | CATTTGTCAACCTTTTATGA+TGG | + | chr3_3:42908685-42908704 | Msa0452980:intron | 30.0% |
| TTTGCAGAGTTATCTTTCTA+AGG | + | chr3_3:42908794-42908813 | Msa0452980:intron | 30.0% | |
| TCAAATTAGTCAATCCAAAC+AGG | - | chr3_3:42908820-42908839 | None:intergenic | 30.0% | |
| !!! | AGCTGTTTTTGTAAGCTATT+CGG | - | chr3_3:42908924-42908943 | None:intergenic | 30.0% |
| TAAAACTTCGCTATTTACAG+AGG | - | chr3_3:42909256-42909275 | None:intergenic | 30.0% | |
| !!! | AAATAGCGAAGTTTTAGTTG+AGG | + | chr3_3:42909260-42909279 | Msa0452980:CDS | 30.0% |
| AGTTGAGGATTATATTGCAA+AGG | + | chr3_3:42909275-42909294 | Msa0452980:CDS | 30.0% | |
| !! | ACTGTGTGACTTTTTAGTAA+AGG | - | chr3_3:42909346-42909365 | None:intergenic | 30.0% |
| AAATTGCTTTCTTCAAGGAA+CGG | - | chr3_3:42909476-42909495 | None:intergenic | 30.0% | |
| ATTGGTTACCTCAAAATCAT+TGG | - | chr3_3:42909525-42909544 | None:intergenic | 30.0% | |
| ACCGATAAAAACACAAACAT+TGG | - | chr3_3:42909765-42909784 | None:intergenic | 30.0% | |
| ACAAACCTTTAATGTCTACA+TGG | - | chr3_3:42909809-42909828 | None:intergenic | 30.0% | |
| ! | CTTTTTATTAGTTGAACCCT+TGG | - | chr3_3:42909968-42909987 | None:intergenic | 30.0% |
| ! | ATTATTAGCTTCATTCTGTG+AGG | - | chr3_3:42910088-42910107 | None:intergenic | 30.0% |
| ! | AGAATCTCTGTTTTATGTTG+TGG | + | chr3_3:42910137-42910156 | Msa0452980:intron | 30.0% |
| GAATAAGACTGTTGAAAGAT+TGG | - | chr3_3:42910208-42910227 | None:intergenic | 30.0% | |
| !! | AGTCTTATTCTACTACGAAA+CGG | + | chr3_3:42910218-42910237 | Msa0452980:CDS | 30.0% |
| AATTCTCATGTAAGCAACTA+AGG | + | chr3_3:42910356-42910375 | Msa0452980:intron | 30.0% | |
| !! | GCAACTAAGGATTGTTTTAT+TGG | + | chr3_3:42910369-42910388 | Msa0452980:intron | 30.0% |
| !! | CTAAGGATTGTTTTATTGGT+TGG | + | chr3_3:42910373-42910392 | Msa0452980:intron | 30.0% |
| ! | GATATTTTTCCTAGACACAA+CGG | - | chr3_3:42910493-42910512 | None:intergenic | 30.0% |
| ! | TTTTTGCTTAAGCATGTGTA+TGG | + | chr3_3:42910622-42910641 | Msa0452980:intron | 30.0% |
| CTATCTTTCAGGGATTAAAA+AGG | - | chr3_3:42910791-42910810 | None:intergenic | 30.0% | |
| TACAAGAACTAATTCAGCAT+AGG | + | chr3_3:42910944-42910963 | Msa0452980:intron | 30.0% | |
| !!! | TAGTTTGTTCCTCATTGTTT+TGG | - | chr3_3:42910991-42911010 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGCACATCTCAAT+AGG | + | chr3_3:42911103-42911122 | Msa0452980:intron | 30.0% |
| ! | AATAGGTATTACTAGCTTAG+AGG | + | chr3_3:42911120-42911139 | Msa0452980:intron | 30.0% |
| ! | ATAGGTATTACTAGCTTAGA+GGG | + | chr3_3:42911121-42911140 | Msa0452980:intron | 30.0% |
| TCCAAAGACAAAAATCAGAA+GGG | - | chr3_3:42911462-42911481 | None:intergenic | 30.0% | |
| TTCCAAAGACAAAAATCAGA+AGG | - | chr3_3:42911463-42911482 | None:intergenic | 30.0% | |
| ! | TGTCTTTGGAAAAAAAATGC+AGG | + | chr3_3:42911472-42911491 | Msa0452980:intron | 30.0% |
| ATAGTTGTCCAGATAAGATT+AGG | - | chr3_3:42911509-42911528 | None:intergenic | 30.0% | |
| AATAAAGTTCCTTCAATTCC+TGG | - | chr3_3:42911537-42911556 | None:intergenic | 30.0% | |
| ! | TCTTTTGACAATCTTCTGTT+AGG | + | chr3_3:42911648-42911667 | Msa0452980:CDS | 30.0% |
| ATCAGAAACAGAAAAGCAAT+TGG | - | chr3_3:42911705-42911724 | None:intergenic | 30.0% | |
| ACTAAGAACACAGAGAAAGA+GGG | + | chr3_3:42906492-42906511 | Msa0452980:five_prime_UTR | 35.0% | |
| TTGGGTTAACAATGATCCAA+TGG | + | chr3_3:42906534-42906553 | Msa0452980:exon | 35.0% | |
| AAGATGAAGAAGTGAAACCT+GGG | - | chr3_3:42906624-42906643 | None:intergenic | 35.0% | |
| AAAGATGAAGAAGTGAAACC+TGG | - | chr3_3:42906625-42906644 | None:intergenic | 35.0% | |
| ! | ATTCTACGTGTTGATCTATG+AGG | + | chr3_3:42906828-42906847 | Msa0452980:intron | 35.0% |
| TGCATGACACTAACATATGT+CGG | + | chr3_3:42906937-42906956 | Msa0452980:intron | 35.0% | |
| !!! | AGGGTTTTAGGTCATTTGTA+TGG | + | chr3_3:42907128-42907147 | Msa0452980:intron | 35.0% |
| TCCCCTCAATTATCATGTAT+TGG | + | chr3_3:42907275-42907294 | Msa0452980:intron | 35.0% | |
| TATGTAGTGTCAGTGTAGAA+AGG | + | chr3_3:42907308-42907327 | Msa0452980:intron | 35.0% | |
| CTATGTCACATGTTCTTTGT+AGG | - | chr3_3:42907678-42907697 | None:intergenic | 35.0% | |
| GAGCAATCGTCTAATTAGAA+AGG | + | chr3_3:42907823-42907842 | Msa0452980:intron | 35.0% | |
| TTCTCTGTCATTGGAATATG+AGG | + | chr3_3:42907934-42907953 | Msa0452980:intron | 35.0% | |
| GTCATTGGAATATGAGGATA+TGG | + | chr3_3:42907940-42907959 | Msa0452980:intron | 35.0% | |
| TGAAAGAAGGCAAGATCTTA+AGG | + | chr3_3:42908023-42908042 | Msa0452980:intron | 35.0% | |
| AAGGCAAGATCTTAAGGTTA+AGG | + | chr3_3:42908029-42908048 | Msa0452980:intron | 35.0% | |
| ! | TGCTTCCTTATATTCTGGTT+TGG | + | chr3_3:42908224-42908243 | Msa0452980:intron | 35.0% |
| !! | TGGTTTGGTTAATGATGAAC+AGG | + | chr3_3:42908239-42908258 | Msa0452980:intron | 35.0% |
| TCTGATTGTATCCCGATTAA+AGG | + | chr3_3:42908268-42908287 | Msa0452980:CDS | 35.0% | |
| TCCCGATTAAAGGAAGTAAA+CGG | + | chr3_3:42908278-42908297 | Msa0452980:CDS | 35.0% | |
| TCCGTTTACTTCCTTTAATC+GGG | - | chr3_3:42908282-42908301 | None:intergenic | 35.0% | |
| ! | AAGTAAACGGATTTCGTACT+TGG | + | chr3_3:42908291-42908310 | Msa0452980:CDS | 35.0% |
| ! | TAGGTTTAAGTTCAACCTTG+AGG | + | chr3_3:42908353-42908372 | Msa0452980:CDS | 35.0% |
| TTCTTGACTGTGCAAAACTT+AGG | + | chr3_3:42908400-42908419 | Msa0452980:CDS | 35.0% | |
| TTGGAAGCTTATCTATATGC+AGG | - | chr3_3:42908546-42908565 | None:intergenic | 35.0% | |
| CTTCCAATCTCTCAATACAA+TGG | + | chr3_3:42908559-42908578 | Msa0452980:intron | 35.0% | |
| AGTCACAAAATTAACCGATC+TGG | - | chr3_3:42908615-42908634 | None:intergenic | 35.0% | |
| CGCATACAATGCAAAGAAAT+TGG | - | chr3_3:42908732-42908751 | None:intergenic | 35.0% | |
| TGAATTATGCATGCACTTCA+TGG | + | chr3_3:42908767-42908786 | Msa0452980:intron | 35.0% | |
| !! | TTATCTTTCTAAGGCCTGTT+TGG | + | chr3_3:42908803-42908822 | Msa0452980:intron | 35.0% |
| !!! | GCTGTTTTTGTAAGCTATTC+GGG | - | chr3_3:42908923-42908942 | None:intergenic | 35.0% |
| TCATAGAGAATAGGCATGTT+TGG | - | chr3_3:42909033-42909052 | None:intergenic | 35.0% | |
| ! | AAGTATTTGCTTTGTTGGTC+AGG | + | chr3_3:42909055-42909074 | Msa0452980:intron | 35.0% |
| ! | AGTATTTGCTTTGTTGGTCA+GGG | + | chr3_3:42909056-42909075 | Msa0452980:intron | 35.0% |
| TTGAAGACCAAGATAACGAT+TGG | - | chr3_3:42909101-42909120 | None:intergenic | 35.0% | |
| ! | ATCGTTATCTTGGTCTTCAA+TGG | + | chr3_3:42909101-42909120 | Msa0452980:CDS | 35.0% |
| CATGACAATAACTGTATGCA+AGG | - | chr3_3:42909216-42909235 | None:intergenic | 35.0% | |
| ! | ATTGTCATGCTTTTCTGTGA+AGG | + | chr3_3:42909227-42909246 | Msa0452980:CDS | 35.0% |
| GCAAAGGATTTGCATACAAA+TGG | + | chr3_3:42909291-42909310 | Msa0452980:CDS | 35.0% | |
| ! | AAATCGAAGATTCTGGAGAA+AGG | + | chr3_3:42909426-42909445 | Msa0452980:CDS | 35.0% |
| ! | TTAGACAGCCAATGATTTTG+AGG | + | chr3_3:42909514-42909533 | Msa0452980:CDS | 35.0% |
| CCTTTAATGTCTACATGGTT+CGG | - | chr3_3:42909804-42909823 | None:intergenic | 35.0% | |
| AATTGGCCATAATGTAAAGG+AGG | - | chr3_3:42909869-42909888 | None:intergenic | 35.0% | |
| AACAAACACACACTCTAATG+AGG | - | chr3_3:42910048-42910067 | None:intergenic | 35.0% | |
| ! | ATCTCTGTTTTATGTTGTGG+AGG | + | chr3_3:42910140-42910159 | Msa0452980:intron | 35.0% |
| AAGATTGGGAACAGTAATGT+GGG | - | chr3_3:42910193-42910212 | None:intergenic | 35.0% | |
| AAAGATTGGGAACAGTAATG+TGG | - | chr3_3:42910194-42910213 | None:intergenic | 35.0% | |
| TTCTAAGCGTCATATGCTTT+AGG | - | chr3_3:42910335-42910354 | None:intergenic | 35.0% | |
| AATCTGCAGAAGATTCAAGA+AGG | - | chr3_3:42910469-42910488 | None:intergenic | 35.0% | |
| TCTAGGAAAAATATCGCCTT+TGG | + | chr3_3:42910498-42910517 | Msa0452980:CDS | 35.0% | |
| !!! | ATTCGTGCTGATTTTCATGT+TGG | - | chr3_3:42910669-42910688 | None:intergenic | 35.0% |
| AACATGAAAATCAGCACGAA+TGG | + | chr3_3:42910668-42910687 | Msa0452980:intron | 35.0% | |
| ! | TAACAGTTTTCATTCCTCAC+TGG | + | chr3_3:42910753-42910772 | Msa0452980:intron | 35.0% |
| AGCATAGGCCAAATATTACA+CGG | + | chr3_3:42910959-42910978 | Msa0452980:intron | 35.0% | |
| GGTTTAGTCCGTGTAATATT+TGG | - | chr3_3:42910970-42910989 | None:intergenic | 35.0% | |
| ATTTACTTTATCACTGCACC+TGG | + | chr3_3:42911073-42911092 | Msa0452980:intron | 35.0% | |
| TGCTTGAAAAAGATGAATCC+AGG | - | chr3_3:42911094-42911113 | None:intergenic | 35.0% | |
| TTACATCCTTGGAGTCTATT+TGG | + | chr3_3:42911212-42911231 | Msa0452980:intron | 35.0% | |
| ATCAATCCAAATAGACTCCA+AGG | - | chr3_3:42911221-42911240 | None:intergenic | 35.0% | |
| ATGCCTTTCCTAATCTTATC+TGG | + | chr3_3:42911498-42911517 | Msa0452980:intron | 35.0% | |
| TGTCCAGATAAGATTAGGAA+AGG | - | chr3_3:42911504-42911523 | None:intergenic | 35.0% | |
| AGTTTCAGCTTTCCCTCTAA+CGG | - | chr3_3:42906420-42906439 | None:intergenic | 40.0% | |
| CACTAAGAACACAGAGAAAG+AGG | + | chr3_3:42906491-42906510 | Msa0452980:five_prime_UTR | 40.0% | |
| CAATGATCCAATGGACGAAT+CGG | + | chr3_3:42906543-42906562 | Msa0452980:exon | 40.0% | |
| AATCGGTTGAATGCTGCATT+TGG | + | chr3_3:42906560-42906579 | Msa0452980:CDS | 40.0% | |
| ATCGGTTGAATGCTGCATTT+GGG | + | chr3_3:42906561-42906580 | Msa0452980:CDS | 40.0% | |
| TTGCTTGATTTACTTCACCC+AGG | + | chr3_3:42906604-42906623 | Msa0452980:CDS | 40.0% | |
| !! | CACAAGTGTTGGTGTTGTTT+CGG | + | chr3_3:42906914-42906933 | Msa0452980:intron | 40.0% |
| !! | TAGAAGTTTCGGTGCTATAG+AGG | + | chr3_3:42906976-42906995 | Msa0452980:intron | 40.0% |
| !! | CTGTATTGATGCAGGGTTTT+AGG | + | chr3_3:42907116-42907135 | Msa0452980:intron | 40.0% |
| AACACAAATTGGGAAGCTGA+GGG | - | chr3_3:42907196-42907215 | None:intergenic | 40.0% | |
| AAACACAAATTGGGAAGCTG+AGG | - | chr3_3:42907197-42907216 | None:intergenic | 40.0% | |
| CACACTGCTTCCTTATATTC+TGG | + | chr3_3:42908219-42908238 | Msa0452980:intron | 40.0% | |
| CAACCTTGAGGAATTCAACA+TGG | + | chr3_3:42908365-42908384 | Msa0452980:CDS | 40.0% | |
| ATCAACAACAACATCTGCCA+TGG | - | chr3_3:42908431-42908450 | None:intergenic | 40.0% | |
| CTTGTCATATCTTACAGCCT+CGG | - | chr3_3:42908464-42908483 | None:intergenic | 40.0% | |
| GGTCCATTGTATTGAGAGAT+TGG | - | chr3_3:42908565-42908584 | None:intergenic | 40.0% | |
| TCAATACAATGGACCAGTGA+AGG | + | chr3_3:42908570-42908589 | Msa0452980:intron | 40.0% | |
| !! | GGGAGTGTTTAATACCAGAT+CGG | + | chr3_3:42908598-42908617 | Msa0452980:intron | 40.0% |
| AAGACCAAGATAACGATTGG+AGG | - | chr3_3:42909098-42909117 | None:intergenic | 40.0% | |
| !! | GAATATGCGGGAGTTTGTTA+GGG | + | chr3_3:42909133-42909152 | Msa0452980:CDS | 40.0% |
| !! | AATATGCGGGAGTTTGTTAG+GGG | + | chr3_3:42909134-42909153 | Msa0452980:CDS | 40.0% |
| AAATGGTAGTAGTAGTACGC+TGG | + | chr3_3:42909308-42909327 | Msa0452980:CDS | 40.0% | |
| TACCAGCAAATCGAAGATTC+TGG | + | chr3_3:42909419-42909438 | Msa0452980:CDS | 40.0% | |
| CCGAACCATGTAGACATTAA+AGG | + | chr3_3:42909801-42909820 | Msa0452980:intron | 40.0% | |
| CTCCATCCTCCTTTACATTA+TGG | + | chr3_3:42909860-42909879 | Msa0452980:intron | 40.0% | |
| GCAAGGAAAAACCAAGACAT+AGG | - | chr3_3:42910171-42910190 | None:intergenic | 40.0% | |
| CTTATTCTACTACGAAACGG+AGG | + | chr3_3:42910221-42910240 | Msa0452980:CDS | 40.0% | |
| ! | AAAGCTCGAAGCATCATTCT+TGG | + | chr3_3:42910248-42910267 | Msa0452980:CDS | 40.0% |
| ! | AAGCTCGAAGCATCATTCTT+GGG | + | chr3_3:42910249-42910268 | Msa0452980:CDS | 40.0% |
| ! | TAGGTGACGGTTATAAACGA+AGG | - | chr3_3:42910316-42910335 | None:intergenic | 40.0% |
| GGACAAAATTTAAGCCAGTG+AGG | - | chr3_3:42910770-42910789 | None:intergenic | 40.0% | |
| CGGACTAAACCAAAACAATG+AGG | + | chr3_3:42910979-42910998 | Msa0452980:intron | 40.0% | |
| TCATAAGCTCTTCACTCTTC+AGG | + | chr3_3:42911340-42911359 | Msa0452980:intron | 40.0% | |
| CATAAGCTCTTCACTCTTCA+GGG | + | chr3_3:42911341-42911360 | Msa0452980:intron | 40.0% | |
| ! | GCCCTTCTGATTTTTGTCTT+TGG | + | chr3_3:42911458-42911477 | Msa0452980:intron | 40.0% |
| AAGTTCCTTCAATTCCTGGA+GGG | - | chr3_3:42911533-42911552 | None:intergenic | 40.0% | |
| AAAGTTCCTTCAATTCCTGG+AGG | - | chr3_3:42911534-42911553 | None:intergenic | 40.0% | |
| AACAACTTGGGAACAACGAT+AGG | + | chr3_3:42911576-42911595 | Msa0452980:CDS | 40.0% | |
| ACAACTTGGGAACAACGATA+GGG | + | chr3_3:42911577-42911596 | Msa0452980:CDS | 40.0% | |
| ! | ACAACGATAGGGTCTTTTGT+AGG | + | chr3_3:42911588-42911607 | Msa0452980:CDS | 40.0% |
| CTGATACCAAAAGAAGCAAC+AGG | + | chr3_3:42911720-42911739 | Msa0452980:CDS | 40.0% | |
| !! | CATTCAACCGATTCGTCCAT+TGG | - | chr3_3:42906553-42906572 | None:intergenic | 45.0% |
| GTCAGTATCGTGTCTAGTGT+CGG | - | chr3_3:42906856-42906875 | None:intergenic | 45.0% | |
| CACTAACATATGTCGGACAC+CGG | + | chr3_3:42906944-42906963 | Msa0452980:intron | 45.0% | |
| GGAGATGATTCTGATGCCTA+TGG | + | chr3_3:42907639-42907658 | Msa0452980:intron | 45.0% | |
| !! | AGGTGCAAAGAAAGCACCAT+AGG | - | chr3_3:42907658-42907677 | None:intergenic | 45.0% |
| GTATGCTTCCAGTAAAACGG+TGG | + | chr3_3:42907793-42907812 | Msa0452980:intron | 45.0% | |
| GTGCCATGTTGAATTCCTCA+AGG | - | chr3_3:42908371-42908390 | None:intergenic | 45.0% | |
| GAATTCAACATGGCACCTGA+TGG | + | chr3_3:42908375-42908394 | Msa0452980:CDS | 45.0% | |
| GCACAGTCAAGAATACCATC+AGG | - | chr3_3:42908393-42908412 | None:intergenic | 45.0% | |
| GCAAAACTTAGGATCAGCCA+TGG | + | chr3_3:42908411-42908430 | Msa0452980:CDS | 45.0% | |
| AAGCTATTCGGGAGAGCTTA+TGG | - | chr3_3:42908912-42908931 | None:intergenic | 45.0% | |
| TTGGAGGTCTCCTGCAAATT+TGG | - | chr3_3:42909082-42909101 | None:intergenic | 45.0% | |
| GAGACCTCCAATCGTTATCT+TGG | + | chr3_3:42909091-42909110 | Msa0452980:CDS | 45.0% | |
| ! | ATCTTGGTCTTCAATGGCTG+TGG | + | chr3_3:42909107-42909126 | Msa0452980:CDS | 45.0% |
| ! | TCTTGGTCTTCAATGGCTGT+GGG | + | chr3_3:42909108-42909127 | Msa0452980:CDS | 45.0% |
| ! | GGAATATGCGGGAGTTTGTT+AGG | + | chr3_3:42909132-42909151 | Msa0452980:CDS | 45.0% |
| !! | ATATGCGGGAGTTTGTTAGG+GGG | + | chr3_3:42909135-42909154 | Msa0452980:CDS | 45.0% |
| AGTAGTACGCTGGATGAAGA+TGG | + | chr3_3:42909318-42909337 | Msa0452980:CDS | 45.0% | |
| ! | CTCCAGAATCTTCGATTTGC+TGG | - | chr3_3:42909424-42909443 | None:intergenic | 45.0% |
| TCTGGAGAAAGGAGATTCCT+TGG | + | chr3_3:42909437-42909456 | Msa0452980:CDS | 45.0% | |
| GAGATTCCTTGGCAACAAAG+TGG | + | chr3_3:42909448-42909467 | Msa0452980:CDS | 45.0% | |
| ! | GAGAGCACACTTCAGATTGA+TGG | + | chr3_3:42909656-42909675 | Msa0452980:intron | 45.0% |
| ATGTCCGACATCAACACATC+TGG | + | chr3_3:42909687-42909706 | Msa0452980:intron | 45.0% | |
| TGTCCGACATCAACACATCT+GGG | + | chr3_3:42909688-42909707 | Msa0452980:intron | 45.0% | |
| ! | GTACCCAGATGTGTTGATGT+CGG | - | chr3_3:42909694-42909713 | None:intergenic | 45.0% |
| GGCCATAATGTAAAGGAGGA+TGG | - | chr3_3:42909865-42909884 | None:intergenic | 45.0% | |
| CACACACTCTAATGAGGAGT+AGG | - | chr3_3:42910042-42910061 | None:intergenic | 45.0% | |
| ! | AGCTCGAAGCATCATTCTTG+GGG | + | chr3_3:42910250-42910269 | Msa0452980:CDS | 45.0% |
| ! | GGTTGGTTAGGACTTATGCT+CGG | + | chr3_3:42910288-42910307 | Msa0452980:CDS | 45.0% |
| ! | GCGTCATATGCTTTAGGTGA+CGG | - | chr3_3:42910329-42910348 | None:intergenic | 45.0% |
| AACCCTATCTGGTACACCAA+AGG | - | chr3_3:42910517-42910536 | None:intergenic | 45.0% | |
| TGGTGTACCAGATAGGGTTA+TGG | + | chr3_3:42910518-42910537 | Msa0452980:CDS | 45.0% | |
| !! | AAGAGCACCATAACCCTATC+TGG | - | chr3_3:42910528-42910547 | None:intergenic | 45.0% |
| GATAGGGTTATGGTGCTCTT+TGG | + | chr3_3:42910528-42910547 | Msa0452980:CDS | 45.0% | |
| AAGCATGTGTATGGTACGAG+AGG | + | chr3_3:42910631-42910650 | Msa0452980:intron | 45.0% | |
| ! | ATAGGGTCTTTTGTAGGTGC+TGG | + | chr3_3:42911594-42911613 | Msa0452980:CDS | 45.0% |
| !! | GATGCACCTGTTGCTTCTTT+TGG | - | chr3_3:42911729-42911748 | None:intergenic | 45.0% |
| !!! | ATAATTTTATTTTGAATTTA+TGG | + | chr3_3:42907574-42907593 | Msa0452980:intron | 5.0% |
| !!! | TTTGTTTATATTTTTATTTA+TGG | + | chr3_3:42910062-42910081 | Msa0452980:intron | 5.0% |
| !!! | TATATCAATTTTATTTTAAA+GGG | - | chr3_3:42910887-42910906 | None:intergenic | 5.0% |
| !!! | ATATATCAATTTTATTTTAA+AGG | - | chr3_3:42910888-42910907 | None:intergenic | 5.0% |
| !!! | TAAAATTGATATATATTTTA+TGG | + | chr3_3:42910894-42910913 | Msa0452980:intron | 5.0% |
| TGCTTCCAGTAAAACGGTGG+TGG | + | chr3_3:42907796-42907815 | Msa0452980:intron | 50.0% | |
| GCTTCCAGTAAAACGGTGGT+GGG | + | chr3_3:42907797-42907816 | Msa0452980:intron | 50.0% | |
| CTTCCAGTAAAACGGTGGTG+GGG | + | chr3_3:42907798-42907817 | Msa0452980:intron | 50.0% | |
| TGTTGATGCGATGATAGCCG+AGG | + | chr3_3:42908444-42908463 | Msa0452980:CDS | 50.0% | |
| AATGGACCAGTGAAGGTCGA+AGG | + | chr3_3:42908577-42908596 | Msa0452980:intron | 50.0% | |
| ATGGACCAGTGAAGGTCGAA+GGG | + | chr3_3:42908578-42908597 | Msa0452980:intron | 50.0% | |
| TTGGTCAGGGCCAAATTTGC+AGG | + | chr3_3:42909069-42909088 | Msa0452980:intron | 50.0% | |
| ATGGCTGTGGGAGGAATATG+CGG | + | chr3_3:42909120-42909139 | Msa0452980:CDS | 50.0% | |
| ACGGAACCACTTTGTTGCCA+AGG | - | chr3_3:42909457-42909476 | None:intergenic | 50.0% | |
| TGGAGGACAGACCTATGTCT+TGG | + | chr3_3:42910157-42910176 | Msa0452980:intron | 50.0% | |
| TGGGAACAGTAATGTGGGCA+AGG | - | chr3_3:42910188-42910207 | None:intergenic | 50.0% | |
| ! | CGAAGCATCATTCTTGGGGA+CGG | + | chr3_3:42910254-42910273 | Msa0452980:CDS | 50.0% |
| ! | GTACGCGTTGTTGGTTGGTT+AGG | + | chr3_3:42910276-42910295 | Msa0452980:CDS | 50.0% |
| CAGGTATGCTCATGTTGCGT+TGG | + | chr3_3:42910443-42910462 | Msa0452980:intron | 50.0% | |
| TGCAGATTGCCGTTGTGTCT+AGG | + | chr3_3:42910481-42910500 | Msa0452980:CDS | 50.0% | |
| ! | TCGCCTTTGGTGTACCAGAT+AGG | + | chr3_3:42910511-42910530 | Msa0452980:CDS | 50.0% |
| ! | CGCCTTTGGTGTACCAGATA+GGG | + | chr3_3:42910512-42910531 | Msa0452980:CDS | 50.0% |
| GGTTATGGTGCTCTTTGGCT+CGG | + | chr3_3:42910533-42910552 | Msa0452980:CDS | 50.0% | |
| !! | TTTGGCTCGGCACTTGTTGA+TGG | + | chr3_3:42910546-42910565 | Msa0452980:CDS | 50.0% |
| CTATGCCCTCCAGGAATTGA+AGG | + | chr3_3:42911525-42911544 | Msa0452980:intron | 50.0% | |
| !!! | GTCTTTTGTAGGTGCTGGCT+TGG | + | chr3_3:42911599-42911618 | Msa0452980:CDS | 50.0% |
| ! | CATCCCCACCACCGTTTTAC+TGG | - | chr3_3:42907804-42907823 | None:intergenic | 55.0% |
| CTGTGCTCTCCCTTGTACCA+TGG | + | chr3_3:42908323-42908342 | Msa0452980:CDS | 55.0% | |
| ACACTCCCTTCGACCTTCAC+TGG | - | chr3_3:42908586-42908605 | None:intergenic | 55.0% | |
| TGGTCTTCAATGGCTGTGGG+AGG | + | chr3_3:42909111-42909130 | Msa0452980:CDS | 55.0% | |
| TGGCTGTGGGAGGAATATGC+GGG | + | chr3_3:42909121-42909140 | Msa0452980:CDS | 55.0% | |
| TCTGGACAACTATGCCCTCC+AGG | + | chr3_3:42911516-42911535 | Msa0452980:intron | 55.0% | |
| TTGGGGACGGTACGCGTTGT+TGG | + | chr3_3:42910267-42910286 | Msa0452980:CDS | 60.0% | |
| GGACGGTACGCGTTGTTGGT+TGG | + | chr3_3:42910271-42910290 | Msa0452980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42906410 | 42911755 | 42906410 | ID=Msa0452980;Name=Msa0452980 |
| chr3_3 | mRNA | 42906410 | 42911755 | 42906410 | ID=Msa0452980-mRNA-1;Parent=Msa0452980;Name=Msa0452980-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135|0.71|0.62|0.87|0.71|0.62|8|0|488 |
| chr3_3 | exon | 42906410 | 42906625 | 42906410 | ID=Msa0452980-mRNA-1:exon:7743;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42907130 | 42907257 | 42907130 | ID=Msa0452980-mRNA-1:exon:7744;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42908261 | 42908482 | 42908261 | ID=Msa0452980-mRNA-1:exon:7745;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42909077 | 42909535 | 42909077 | ID=Msa0452980-mRNA-1:exon:7746;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42910167 | 42910364 | 42910167 | ID=Msa0452980-mRNA-1:exon:7747;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42910446 | 42910587 | 42910446 | ID=Msa0452980-mRNA-1:exon:7748;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42910634 | 42910652 | 42910634 | ID=Msa0452980-mRNA-1:exon:7749;Parent=Msa0452980-mRNA-1 |
| chr3_3 | exon | 42911538 | 42911755 | 42911538 | ID=Msa0452980-mRNA-1:exon:7750;Parent=Msa0452980-mRNA-1 |
| chr3_3 | five_prime_UTR | 42906410 | 42906544 | 42906410 | ID=Msa0452980-mRNA-1:five_prime_utr;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42906545 | 42906625 | 42906545 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42907130 | 42907257 | 42907130 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42908261 | 42908482 | 42908261 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42909077 | 42909535 | 42909077 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42910167 | 42910364 | 42910167 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42910446 | 42910587 | 42910446 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42910634 | 42910652 | 42910634 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| chr3_3 | CDS | 42911538 | 42911755 | 42911538 | ID=Msa0452980-mRNA-1:cds;Parent=Msa0452980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
