Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495360 | XP_003600052.1 | 98.588 | 425 | 6 | 0 | 4 | 428 | 71 | 495 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495360 | sp|Q8RWQ5|FBT4_ARATH | 64.000 | 425 | 148 | 2 | 4 | 428 | 71 | 490 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495360 | G7IXK2 | 98.588 | 425 | 6 | 0 | 4 | 428 | 71 | 495 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0495360 | 0.819153 | 1.348529e-52 | -8.615850e-47 |
| Msa0010500 | Msa0495360 | 0.801682 | 8.026043e-49 | -8.615850e-47 |
| Msa0012710 | Msa0495360 | 0.800018 | 1.754508e-48 | -8.615850e-47 |
| Msa0017320 | Msa0495360 | 0.802851 | 4.610764e-49 | -8.615850e-47 |
| Msa0138020 | Msa0495360 | 0.813673 | 2.272468e-51 | -8.615850e-47 |
| Msa0152560 | Msa0495360 | 0.812607 | 3.893790e-51 | -8.615850e-47 |
| Msa0217700 | Msa0495360 | 0.826253 | 3.002495e-54 | -8.615850e-47 |
| Msa0225670 | Msa0495360 | 0.822750 | 2.004306e-53 | -8.615850e-47 |
| Msa0233370 | Msa0495360 | 0.831231 | 1.877082e-55 | -8.615850e-47 |
| Msa0382310 | Msa0495360 | 0.807965 | 3.906197e-50 | -8.615850e-47 |
| Msa0382400 | Msa0495360 | 0.816944 | 4.257836e-52 | -8.615850e-47 |
| Msa0391400 | Msa0495360 | 0.925433 | 1.846971e-90 | -8.615850e-47 |
| Msa0408300 | Msa0495360 | 0.929209 | 9.645675e-93 | -8.615850e-47 |
| Msa0428580 | Msa0495360 | 0.804079 | 2.565446e-49 | -8.615850e-47 |
| Msa0431210 | Msa0495360 | 0.805291 | 1.433010e-49 | -8.615850e-47 |
| Msa0432130 | Msa0495360 | 0.807105 | 5.947353e-50 | -8.615850e-47 |
| Msa0452980 | Msa0495360 | 0.851443 | 8.847991e-61 | -8.615850e-47 |
| Msa0476640 | Msa0495360 | 0.805969 | 1.032517e-49 | -8.615850e-47 |
| Msa0481030 | Msa0495360 | 0.805926 | 1.054470e-49 | -8.615850e-47 |
| Msa0240270 | Msa0495360 | 0.800215 | 1.600117e-48 | -8.615850e-47 |
| Msa0241140 | Msa0495360 | 0.812893 | 3.370590e-51 | -8.615850e-47 |
| Msa0278580 | Msa0495360 | 0.829271 | 5.651661e-55 | -8.615850e-47 |
| Msa0303460 | Msa0495360 | 0.821759 | 3.402746e-53 | -8.615850e-47 |
| Msa0303520 | Msa0495360 | 0.820607 | 6.272825e-53 | -8.615850e-47 |
| Msa0310440 | Msa0495360 | 0.802460 | 5.552732e-49 | -8.615850e-47 |
| Msa0317960 | Msa0495360 | 0.818364 | 2.037693e-52 | -8.615850e-47 |
| Msa0317970 | Msa0495360 | 0.801230 | 9.929810e-49 | -8.615850e-47 |
| Msa0333970 | Msa0495360 | -0.803200 | 3.904494e-49 | -8.615850e-47 |
| Msa0495360 | Msa0500470 | 0.802275 | 6.060537e-49 | -8.615850e-47 |
| Msa0495360 | Msa0520270 | 0.805860 | 1.088432e-49 | -8.615850e-47 |
| Msa0495360 | Msa0532980 | 0.820451 | 6.812633e-53 | -8.615850e-47 |
| Msa0495360 | Msa0560500 | 0.803550 | 3.304905e-49 | -8.615850e-47 |
| Msa0495360 | Msa0566750 | 0.800625 | 1.320375e-48 | -8.615850e-47 |
| Msa0495360 | Msa0610250 | 0.809935 | 1.479298e-50 | -8.615850e-47 |
| Msa0495360 | Msa0614920 | 0.810359 | 1.198550e-50 | -8.615850e-47 |
| Msa0495360 | Msa0620620 | 0.809112 | 2.222276e-50 | -8.615850e-47 |
| Msa0495360 | Msa0624060 | 0.804227 | 2.389828e-49 | -8.615850e-47 |
| Msa0495360 | Msa0667790 | 0.813236 | 2.834226e-51 | -8.615850e-47 |
| Msa0495360 | Msa0705990 | 0.801446 | 8.968114e-49 | -8.615850e-47 |
| Msa0495360 | Msa0750810 | 0.817758 | 2.792821e-52 | -8.615850e-47 |
| Msa0495360 | Msa0779260 | 0.827563 | 1.460209e-54 | -8.615850e-47 |
| Msa0495360 | Msa0794210 | 0.805381 | 1.371915e-49 | -8.615850e-47 |
| Msa0495360 | Msa0822500 | 0.817112 | 3.904424e-52 | -8.615850e-47 |
| Msa0495360 | Msa0865030 | 0.822941 | 1.808734e-53 | -8.615850e-47 |
| Msa0495360 | Msa0880810 | 0.842985 | 1.849919e-58 | -8.615850e-47 |
| Msa0495360 | Msa0980020 | 0.800735 | 1.253765e-48 | -8.615850e-47 |
| Msa0495360 | Msa1042660 | 0.801038 | 1.086986e-48 | -8.615850e-47 |
| Msa0495360 | Msa1063420 | 0.808875 | 2.498570e-50 | -8.615850e-47 |
| Msa0495360 | Msa1089320 | 0.825288 | 5.086944e-54 | -8.615850e-47 |
| Msa0495360 | Msa1089450 | 0.804485 | 2.112055e-49 | -8.615850e-47 |
| Msa0495360 | Msa1089460 | 0.825379 | 4.840686e-54 | -8.615850e-47 |
| Msa0495360 | Msa1207310 | 0.805310 | 1.420010e-49 | -8.615850e-47 |
| Msa0495360 | Msa1218580 | 0.844581 | 6.918074e-59 | -8.615850e-47 |
| Msa0495360 | Msa1246700 | 0.803117 | 4.063251e-49 | -8.615850e-47 |
| Msa0495360 | Msa1270660 | 0.801973 | 6.991933e-49 | -8.615850e-47 |
| Msa0495360 | Msa1307180 | 0.842309 | 2.797128e-58 | -8.615850e-47 |
| Msa0495360 | Msa1316360 | 0.847698 | 9.808619e-60 | -8.615850e-47 |
| Msa0495360 | Msa1346840 | 0.810333 | 1.214178e-50 | -8.615850e-47 |
| Msa0495360 | Msa1364210 | 0.825633 | 4.214405e-54 | -8.615850e-47 |
| Msa0495360 | Msa1372280 | 0.809140 | 2.192108e-50 | -8.615850e-47 |
| Msa0495360 | Msa1378410 | 0.806901 | 6.568896e-50 | -8.615850e-47 |
| Msa0495360 | Msa1382790 | 0.803287 | 3.747185e-49 | -8.615850e-47 |
| Msa0495360 | Msa1391550 | 0.806709 | 7.212077e-50 | -8.615850e-47 |
| Msa0495360 | Msa1407190 | 0.817097 | 3.934560e-52 | -8.615850e-47 |
| Msa0495360 | Msa1428780 | 0.806903 | 6.562045e-50 | -8.615850e-47 |
| Msa0495360 | Msa1432130 | 0.816035 | 6.804640e-52 | -8.615850e-47 |
| Msa0495360 | Msa1436600 | 0.845725 | 3.394356e-59 | -8.615850e-47 |
| Msa0495360 | Msa1462360 | 0.806130 | 9.549438e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495360 | MtrunA17_Chr3g0098661 | 98.588 | 425 | 6 | 0 | 4 | 428 | 71 | 495 | 0.0 | 845 |
| Msa0495360 | MtrunA17_Chr2g0293351 | 27.700 | 426 | 235 | 6 | 4 | 421 | 78 | 438 | 4.45e-48 | 170 |
| Msa0495360 | MtrunA17_Chr3g0079271 | 29.976 | 417 | 234 | 4 | 4 | 420 | 156 | 514 | 1.10e-46 | 169 |
| Msa0495360 | MtrunA17_Chr1g0205221 | 30.617 | 405 | 220 | 8 | 5 | 409 | 168 | 511 | 1.34e-39 | 149 |
| Msa0495360 | MtrunA17_Chr2g0293361 | 36.190 | 210 | 134 | 0 | 212 | 421 | 34 | 243 | 3.65e-39 | 141 |
| Msa0495360 | MtrunA17_Chr2g0293371 | 26.877 | 413 | 229 | 6 | 17 | 421 | 1 | 348 | 5.34e-39 | 144 |
| Msa0495360 | MtrunA17_Chr1g0150001 | 26.118 | 425 | 238 | 8 | 4 | 421 | 107 | 462 | 1.05e-33 | 132 |
| Msa0495360 | MtrunA17_Chr1g0150031 | 32.500 | 160 | 108 | 0 | 262 | 421 | 3 | 162 | 4.31e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495360 | AT5G54860.1 | 64.000 | 425 | 148 | 2 | 4 | 428 | 71 | 490 | 0.0 | 546 |
| Msa0495360 | AT2G32040.2 | 29.630 | 405 | 226 | 7 | 5 | 409 | 51 | 396 | 4.39e-37 | 140 |
| Msa0495360 | AT2G32040.1 | 29.383 | 405 | 227 | 7 | 5 | 409 | 182 | 527 | 2.92e-36 | 140 |
| Msa0495360 | AT1G04570.2 | 33.962 | 212 | 140 | 0 | 209 | 420 | 137 | 348 | 1.08e-34 | 133 |
| Msa0495360 | AT1G64890.1 | 34.906 | 212 | 138 | 0 | 212 | 423 | 221 | 432 | 5.91e-34 | 132 |
| Msa0495360 | AT1G04570.1 | 33.962 | 212 | 140 | 0 | 209 | 420 | 285 | 496 | 2.07e-33 | 132 |
| Msa0495360 | AT1G79710.2 | 25.412 | 425 | 241 | 9 | 4 | 421 | 106 | 461 | 3.00e-32 | 128 |
| Msa0495360 | AT1G79710.1 | 25.412 | 425 | 241 | 9 | 4 | 421 | 106 | 461 | 3.00e-32 | 128 |
| Msa0495360 | AT5G10820.1 | 25.592 | 422 | 245 | 8 | 4 | 420 | 114 | 471 | 1.05e-31 | 126 |
| Msa0495360 | AT2G33280.2 | 32.243 | 214 | 145 | 0 | 212 | 425 | 107 | 320 | 2.05e-31 | 123 |
| Msa0495360 | AT2G33280.3 | 32.243 | 214 | 145 | 0 | 212 | 425 | 181 | 394 | 1.07e-30 | 122 |
| Msa0495360 | AT2G33280.1 | 32.243 | 214 | 145 | 0 | 212 | 425 | 289 | 502 | 2.26e-30 | 123 |
| Msa0495360 | AT5G25050.1 | 29.612 | 206 | 142 | 1 | 219 | 421 | 252 | 457 | 3.49e-26 | 110 |
| Msa0495360 | AT5G25040.5 | 27.442 | 215 | 153 | 1 | 210 | 421 | 94 | 308 | 5.09e-26 | 108 |
| Msa0495360 | AT5G25040.4 | 27.442 | 215 | 153 | 1 | 210 | 421 | 241 | 455 | 3.45e-25 | 107 |
| Msa0495360 | AT5G25040.2 | 32.278 | 158 | 107 | 0 | 264 | 421 | 323 | 480 | 3.97e-24 | 105 |
| Msa0495360 | AT5G25040.1 | 26.230 | 183 | 132 | 1 | 210 | 389 | 241 | 423 | 5.08e-17 | 83.2 |
| Msa0495360 | AT1G79710.3 | 21.547 | 362 | 208 | 9 | 4 | 358 | 106 | 398 | 4.23e-15 | 77.0 |
Find 100 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATTGTATCCCGATTAA+AGG | 0.188248 | 3_4:+24510162 | Msa0495360:CDS |
| TTGGAGGTCTCCTGCAAATT+TGG | 0.210403 | 3_4:-24511007 | None:intergenic |
| GATGCACCTGTTGCTTCTTT+TGG | 0.267349 | 3_4:-24513655 | None:intergenic |
| CTCCAGAATCTTCGATTTGC+TGG | 0.283430 | 3_4:-24511349 | None:intergenic |
| ATGCCTTTCCTAATCTTATC+TGG | 0.289468 | 3_4:+24513427 | Msa0495360:CDS |
| ATCCGCTTACTTCCTTTAAT+CGG | 0.294910 | 3_4:-24510174 | None:intergenic |
| TTTGGCTCGGCACTTGTTGA+TGG | 0.295783 | 3_4:+24512474 | Msa0495360:CDS |
| TTCTAAGCGTCATATGCTTT+AGG | 0.310369 | 3_4:-24512260 | None:intergenic |
| TGTAAATTGGAAAATATTAG+AGG | 0.316689 | 3_4:+24513776 | Msa0495360:three_prime_UTR |
| TTGGTCAGGGCCAAATTTGC+AGG | 0.328122 | 3_4:+24510997 | Msa0495360:intron |
| GGAATATGCGGGAGTTTGTT+AGG | 0.329268 | 3_4:+24511060 | Msa0495360:CDS |
| AATAAAGTTCCTTCAATTCC+TGG | 0.338588 | 3_4:-24513463 | None:intergenic |
| ATCATAAATTGCTTTCTTCA+AGG | 0.340461 | 3_4:-24511406 | None:intergenic |
| TACCAGCAAATCGAAGATTC+TGG | 0.353963 | 3_4:+24511347 | Msa0495360:CDS |
| TTGATGAATACCATTGGAAT+TGG | 0.356869 | 3_4:+24513696 | Msa0495360:three_prime_UTR |
| TCGCCTTTGGTGTACCAGAT+AGG | 0.358572 | 3_4:+24512439 | Msa0495360:CDS |
| GATAGGGTTATGGTGCTCTT+TGG | 0.362387 | 3_4:+24512456 | Msa0495360:CDS |
| GAATAAGACTGTTGAAAGAT+TGG | 0.368387 | 3_4:-24512133 | None:intergenic |
| AAAGCTCGAAGCATCATTCT+TGG | 0.370525 | 3_4:+24512176 | Msa0495360:CDS |
| TCTATATTGAACATAGATTC+AGG | 0.374425 | 3_4:+24513553 | Msa0495360:CDS |
| AAGTAAGCGGATTTCGTACT+TGG | 0.393076 | 3_4:+24510185 | Msa0495360:CDS |
| ATTGGTTACCTCAAAATCAT+TGG | 0.394424 | 3_4:-24511450 | None:intergenic |
| ATCATTATCTTGGTCTTCAA+TGG | 0.396384 | 3_4:+24511029 | Msa0495360:CDS |
| ATCTTGGTCTTCAATGGCTG+TGG | 0.396603 | 3_4:+24511035 | Msa0495360:CDS |
| TCCGCTTACTTCCTTTAATC+GGG | 0.406523 | 3_4:-24510173 | None:intergenic |
| AAGAGCACCATAACCCTATC+TGG | 0.416214 | 3_4:-24512453 | None:intergenic |
| GAATATGCGGGAGTTTGTTA+GGG | 0.418448 | 3_4:+24511061 | Msa0495360:CDS |
| AAGCTCGAAGCATCATTCTT+GGG | 0.419923 | 3_4:+24512177 | Msa0495360:CDS |
| GTACGCGTTGTTGGTTGGTT+AGG | 0.423916 | 3_4:+24512204 | Msa0495360:CDS |
| TTGGGGACGGTACGCGTTGT+TGG | 0.428599 | 3_4:+24512195 | Msa0495360:CDS |
| TGGTGTACCAGATAGGGTTA+TGG | 0.430972 | 3_4:+24512446 | Msa0495360:CDS |
| GCAAAGGATTTGCATACAAA+TGG | 0.433365 | 3_4:+24511219 | Msa0495360:CDS |
| ATCAGAAACAGAAAAGCAAT+TGG | 0.433826 | 3_4:-24513631 | None:intergenic |
| TTGAAGACCAAGATAATGAT+TGG | 0.443377 | 3_4:-24511026 | None:intergenic |
| AATAAGACTGTTGAAAGATT+GGG | 0.450409 | 3_4:-24512132 | None:intergenic |
| CTGTGCTCTCCCTTGTACCA+TGG | 0.460291 | 3_4:+24510217 | Msa0495360:CDS |
| CTATGCCCTCCAGGAATTGA+AGG | 0.462869 | 3_4:+24513454 | Msa0495360:CDS |
| CGCCTTTGGTGTACCAGATA+GGG | 0.464246 | 3_4:+24512440 | Msa0495360:CDS |
| TTTCATGTCAATAAACAACT+TGG | 0.464904 | 3_4:+24513492 | Msa0495360:CDS |
| ATAGTTGTCCAGATAAGATT+AGG | 0.465222 | 3_4:-24513435 | None:intergenic |
| GAGACCTCCAATCATTATCT+TGG | 0.465996 | 3_4:+24511019 | Msa0495360:CDS |
| TGGAGGACAGACCTATGTCT+TGG | 0.476709 | 3_4:+24512085 | Msa0495360:intron |
| TTCTTGACTGTGCAAAACTT+AGG | 0.479731 | 3_4:+24510294 | Msa0495360:CDS |
| AAATTGCTTTCTTCAAGGAA+TGG | 0.479777 | 3_4:-24511401 | None:intergenic |
| TCTGGAGAAAGGAGATTCCT+TGG | 0.489789 | 3_4:+24511365 | Msa0495360:CDS |
| CTAAAATAAACCATGGTACA+AGG | 0.490097 | 3_4:-24510227 | None:intergenic |
| GGAAAATATTAGAGGAAATG+AGG | 0.496578 | 3_4:+24513784 | Msa0495360:three_prime_UTR |
| CTGATACCAAAAGAAGCAAC+AGG | 0.498367 | 3_4:+24513649 | Msa0495360:CDS |
| GGTTATGGTGCTCTTTGGCT+CGG | 0.505871 | 3_4:+24512461 | Msa0495360:CDS |
| CAGGTATGCTCATGTTGCGT+TGG | 0.512392 | 3_4:+24512371 | Msa0495360:intron |
| TCTGGACAACTATGCCCTCC+AGG | 0.515434 | 3_4:+24513445 | Msa0495360:CDS |
| TCTTGGTCTTCAATGGCTGT+GGG | 0.522835 | 3_4:+24511036 | Msa0495360:CDS |
| AACAACTTGGGAACAACGAT+AGG | 0.523273 | 3_4:+24513505 | Msa0495360:CDS |
| TGCAGATTGCCGTTGTGTCT+AGG | 0.528098 | 3_4:+24512409 | Msa0495360:CDS |
| GGACGGTACGCGTTGTTGGT+TGG | 0.528967 | 3_4:+24512199 | Msa0495360:CDS |
| TTCATGTCAATAAACAACTT+GGG | 0.529203 | 3_4:+24513493 | Msa0495360:CDS |
| AAATCGAAGATTCTGGAGAA+AGG | 0.536470 | 3_4:+24511354 | Msa0495360:CDS |
| CATGATAATAACTGTATGCA+AGG | 0.547185 | 3_4:-24511141 | None:intergenic |
| TAGTTATTGATGAATACCAT+TGG | 0.549832 | 3_4:+24513690 | Msa0495360:three_prime_UTR |
| AGTTGAGGATTATATTGCAA+AGG | 0.550493 | 3_4:+24511203 | Msa0495360:CDS |
| ATGGAACCACTTTGTTGCCA+AGG | 0.553047 | 3_4:-24511382 | None:intergenic |
| CTTGTCATATCTTACAGCCT+CGG | 0.554473 | 3_4:-24510355 | None:intergenic |
| GCGTCATATGCTTTAGGTGA+CGG | 0.557890 | 3_4:-24512254 | None:intergenic |
| AGTCTTATTCTACTACGAAA+CGG | 0.561877 | 3_4:+24512146 | Msa0495360:CDS |
| GCACAGTCAAGAATACCATC+AGG | 0.566177 | 3_4:-24510284 | None:intergenic |
| TTGCATACAAATGGTAGTAG+TGG | 0.583089 | 3_4:+24511228 | Msa0495360:CDS |
| AATATGCGGGAGTTTGTTAG+GGG | 0.585466 | 3_4:+24511062 | Msa0495360:CDS |
| AAAGATTGGGAACAGTAATG+TGG | 0.587892 | 3_4:-24512119 | None:intergenic |
| GGTTGGTTAGGACTTATGCT+CGG | 0.594212 | 3_4:+24512216 | Msa0495360:CDS |
| TGGGAACAGTAATGTGGGCA+AGG | 0.597103 | 3_4:-24512113 | None:intergenic |
| ACAACTTGGGAACAACGATA+GGG | 0.598636 | 3_4:+24513506 | Msa0495360:CDS |
| GAATTCAACATGGCACCTGA+TGG | 0.602006 | 3_4:+24510269 | Msa0495360:CDS |
| AGCTCGAAGCATCATTCTTG+GGG | 0.605840 | 3_4:+24512178 | Msa0495360:CDS |
| ATCAACAACAACATCTGCCA+TGG | 0.606162 | 3_4:-24510322 | None:intergenic |
| CGAAGCATCATTCTTGGGGA+CGG | 0.607115 | 3_4:+24512182 | Msa0495360:CDS |
| ATGGCTGTGGGAGGAATATG+CGG | 0.607957 | 3_4:+24511048 | Msa0495360:CDS |
| TGTCCAGATAAGATTAGGAA+AGG | 0.608005 | 3_4:-24513430 | None:intergenic |
| TATCAACTATCAAAATACCT+AGG | 0.608426 | 3_4:-24513743 | None:intergenic |
| GTGTGTATAACCAATTCCAA+TGG | 0.609701 | 3_4:-24513706 | None:intergenic |
| TAAAATAAACCATGGTACAA+GGG | 0.610741 | 3_4:-24510226 | None:intergenic |
| AAGATTGGGAACAGTAATGT+GGG | 0.612894 | 3_4:-24512118 | None:intergenic |
| CAACCTTGAGGAATTCAACA+TGG | 0.615312 | 3_4:+24510259 | Msa0495360:CDS |
| TGGTCTTCAATGGCTGTGGG+AGG | 0.618541 | 3_4:+24511039 | Msa0495360:CDS |
| GTGCCATGTTGAATTCCTCA+AGG | 0.618903 | 3_4:-24510262 | None:intergenic |
| AAGACCAAGATAATGATTGG+AGG | 0.620304 | 3_4:-24511023 | None:intergenic |
| CTTAAACCTAAAATAAACCA+TGG | 0.629672 | 3_4:-24510234 | None:intergenic |
| TAGGTGACGGTTATAAACGA+AGG | 0.632468 | 3_4:-24512241 | None:intergenic |
| GAGATTCCTTGGCAACAAAG+TGG | 0.632737 | 3_4:+24511376 | Msa0495360:CDS |
| AACCCTATCTGGTACACCAA+AGG | 0.632946 | 3_4:-24512442 | None:intergenic |
| TAGGTTTAAGTTCAACCTTG+AGG | 0.633543 | 3_4:+24510247 | Msa0495360:CDS |
| AAGTTCCTTCAATTCCTGGA+GGG | 0.637778 | 3_4:-24513459 | None:intergenic |
| TGGCTGTGGGAGGAATATGC+GGG | 0.640200 | 3_4:+24511049 | Msa0495360:CDS |
| TAAAACTTCGCTATTTACAG+AGG | 0.655075 | 3_4:-24511181 | None:intergenic |
| AATCTGCAGAAGATTCAAGA+AGG | 0.662867 | 3_4:-24512394 | None:intergenic |
| TCCCGATTAAAGGAAGTAAG+CGG | 0.662912 | 3_4:+24510172 | Msa0495360:CDS |
| GCAAAACTTAGGATCAGCCA+TGG | 0.664884 | 3_4:+24510305 | Msa0495360:CDS |
| AAAGTTCCTTCAATTCCTGG+AGG | 0.671510 | 3_4:-24513460 | None:intergenic |
| CTTATTCTACTACGAAACGG+AGG | 0.704156 | 3_4:+24512149 | Msa0495360:CDS |
| TGTTGATGCGATGATAGCCG+AGG | 0.715574 | 3_4:+24510338 | Msa0495360:CDS |
| ATATGCGGGAGTTTGTTAGG+GGG | 0.728603 | 3_4:+24511063 | Msa0495360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATAATTATATATGAA+TGG | - | chr3_4:24511565-24511584 | None:intergenic | 10.0% |
| !!! | TTTTTGTAAGTTAAAATAAT+TGG | - | chr3_4:24511814-24511833 | None:intergenic | 10.0% |
| !!! | AAACTATAATGTTTTATATA+GGG | + | chr3_4:24512933-24512952 | Msa0495360:intron | 10.0% |
| !!! | AAAGTAGATATTTGAAATTT+TGG | + | chr3_4:24511477-24511496 | Msa0495360:intron | 15.0% |
| !! | ACTAATAAAAAGTAATGTTT+CGG | + | chr3_4:24511904-24511923 | Msa0495360:intron | 15.0% |
| !! | AAAAAAAATACTATCTTTCA+GGG | - | chr3_4:24512729-24512748 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACTATCTTTC+AGG | - | chr3_4:24512730-24512749 | None:intergenic | 15.0% |
| !!! | ATAGTATTTTTTTTTGCTTA+TGG | + | chr3_4:24512735-24512754 | Msa0495360:intron | 15.0% |
| !!! | CAAACTATAATGTTTTATAT+AGG | + | chr3_4:24512932-24512951 | Msa0495360:intron | 15.0% |
| !! | CAAATATCTACTTTAATGAT+TGG | - | chr3_4:24511471-24511490 | None:intergenic | 20.0% |
| !!! | CTGTTTACTTTTTAAGATTA+TGG | + | chr3_4:24511500-24511519 | Msa0495360:intron | 20.0% |
| !!! | ATGGAGATTATCTTTTTAAT+TGG | - | chr3_4:24511774-24511793 | None:intergenic | 20.0% |
| !!! | TATGTTCTTCTTTTTATTAC+AGG | + | chr3_4:24512352-24512371 | Msa0495360:intron | 20.0% |
| !!! | AAAAGATGATATCTTCATTT+TGG | + | chr3_4:24512630-24512649 | Msa0495360:intron | 20.0% |
| !!! | ATATTTTCCACTTTGTAAAT+TGG | + | chr3_4:24513763-24513782 | Msa0495360:three_prime_UTR | 20.0% |
| !!! | ATATTTTCCAATTTACAAAG+TGG | - | chr3_4:24513773-24513792 | None:intergenic | 20.0% |
| !! | TGTAAATTGGAAAATATTAG+AGG | + | chr3_4:24513776-24513795 | Msa0495360:three_prime_UTR | 20.0% |
| ! | TAAAATAAACCATGGTACAA+GGG | - | chr3_4:24510229-24510248 | None:intergenic | 25.0% |
| ! | CTTAAACCTAAAATAAACCA+TGG | - | chr3_4:24510237-24510256 | None:intergenic | 25.0% |
| ! | TTATCTTGGACAATGAAATT+AGG | - | chr3_4:24510400-24510419 | None:intergenic | 25.0% |
| ! | TTGATCTAACAACTGAAATA+AGG | - | chr3_4:24510564-24510583 | None:intergenic | 25.0% |
| ! | AACACTTAATCATAGAGAAT+AGG | - | chr3_4:24510970-24510989 | None:intergenic | 25.0% |
| ! | TAGTACAAGAAAAAGAAAGA+AGG | + | chr3_4:24511293-24511312 | Msa0495360:CDS | 25.0% |
| ! | AGTACAAGAAAAAGAAAGAA+GGG | + | chr3_4:24511294-24511313 | Msa0495360:CDS | 25.0% |
| ! | ATCATAAATTGCTTTCTTCA+AGG | - | chr3_4:24511409-24511428 | None:intergenic | 25.0% |
| !!! | TCCAATGTTTGTGTTTTTAT+CGG | + | chr3_4:24511689-24511708 | Msa0495360:intron | 25.0% |
| !!! | CTTTTTAATTGGCTGAAAAT+TGG | - | chr3_4:24511763-24511782 | None:intergenic | 25.0% |
| ! | AATAATTGGCCATAATGTAA+AGG | - | chr3_4:24511800-24511819 | None:intergenic | 25.0% |
| ! | TTCAAATACATTATCTACCA+AGG | + | chr3_4:24511876-24511895 | Msa0495360:intron | 25.0% |
| ! | TCAAATACATTATCTACCAA+GGG | + | chr3_4:24511877-24511896 | Msa0495360:intron | 25.0% |
| ! | AATAAGACTGTTGAAAGATT+GGG | - | chr3_4:24512135-24512154 | None:intergenic | 25.0% |
| ! | TAAAGGGACTAATTCAATAT+GGG | - | chr3_4:24512799-24512818 | None:intergenic | 25.0% |
| ! | TTAAAGGGACTAATTCAATA+TGG | - | chr3_4:24512800-24512819 | None:intergenic | 25.0% |
| !! | ACCGAAAAAGTGTATATTAA+AGG | + | chr3_4:24512962-24512981 | Msa0495360:intron | 25.0% |
| !!! | CCCTTTAATATACACTTTTT+CGG | - | chr3_4:24512966-24512985 | None:intergenic | 25.0% |
| !! | CCGAAAAAGTGTATATTAAA+GGG | + | chr3_4:24512963-24512982 | Msa0495360:intron | 25.0% |
| ! | TGAAGCATAATGATTTGATA+TGG | + | chr3_4:24513103-24513122 | Msa0495360:intron | 25.0% |
| ! | AAGGATGTAACACAAAAAAA+TGG | - | chr3_4:24513130-24513149 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTGTTACATCCT+TGG | + | chr3_4:24513129-24513148 | Msa0495360:intron | 25.0% |
| !! | GACTCTTTTATCTTTTGTTA+TGG | + | chr3_4:24513332-24513351 | Msa0495360:intron | 25.0% |
| ! | TTTCATGTCAATAAACAACT+TGG | + | chr3_4:24513492-24513511 | Msa0495360:CDS | 25.0% |
| ! | TTCATGTCAATAAACAACTT+GGG | + | chr3_4:24513493-24513512 | Msa0495360:CDS | 25.0% |
| ! | TCTATATTGAACATAGATTC+AGG | + | chr3_4:24513553-24513572 | Msa0495360:CDS | 25.0% |
| ! | TAGTTATTGATGAATACCAT+TGG | + | chr3_4:24513690-24513709 | Msa0495360:three_prime_UTR | 25.0% |
| ! | TATCAACTATCAAAATACCT+AGG | - | chr3_4:24513746-24513765 | None:intergenic | 25.0% |
| CTAAAATAAACCATGGTACA+AGG | - | chr3_4:24510230-24510249 | None:intergenic | 30.0% | |
| !! | CTTGTACCATGGTTTATTTT+AGG | + | chr3_4:24510228-24510247 | Msa0495360:CDS | 30.0% |
| CAATATGCAACAGTTTATCT+TGG | - | chr3_4:24510414-24510433 | None:intergenic | 30.0% | |
| AGAAATACATCCATCATAGA+AGG | - | chr3_4:24510599-24510618 | None:intergenic | 30.0% | |
| CACATACAATGCAAAGAAAT+TGG | - | chr3_4:24510633-24510652 | None:intergenic | 30.0% | |
| TCAAATTAGTCAATCCAAAC+AGG | - | chr3_4:24510727-24510746 | None:intergenic | 30.0% | |
| ! | AATGAGTTGAAAACAGCTTA+TGG | - | chr3_4:24510818-24510837 | None:intergenic | 30.0% |
| !!! | AGCTGTTTTTGTAAGCTATT+CGG | - | chr3_4:24510854-24510873 | None:intergenic | 30.0% |
| TGATTAAGTGTTTGCTTTGT+TGG | + | chr3_4:24510978-24510997 | Msa0495360:intron | 30.0% | |
| TTGAAGACCAAGATAATGAT+TGG | - | chr3_4:24511029-24511048 | None:intergenic | 30.0% | |
| ! | ATCATTATCTTGGTCTTCAA+TGG | + | chr3_4:24511029-24511048 | Msa0495360:CDS | 30.0% |
| CATGATAATAACTGTATGCA+AGG | - | chr3_4:24511144-24511163 | None:intergenic | 30.0% | |
| ! | ATTATCATGCTTTTCTGTGA+AGG | + | chr3_4:24511155-24511174 | Msa0495360:CDS | 30.0% |
| TAAAACTTCGCTATTTACAG+AGG | - | chr3_4:24511184-24511203 | None:intergenic | 30.0% | |
| !!! | AAATAGCGAAGTTTTAGTTG+AGG | + | chr3_4:24511188-24511207 | Msa0495360:CDS | 30.0% |
| AGTTGAGGATTATATTGCAA+AGG | + | chr3_4:24511203-24511222 | Msa0495360:CDS | 30.0% | |
| AAATTGCTTTCTTCAAGGAA+TGG | - | chr3_4:24511404-24511423 | None:intergenic | 30.0% | |
| ATTGGTTACCTCAAAATCAT+TGG | - | chr3_4:24511453-24511472 | None:intergenic | 30.0% | |
| ACCGATAAAAACACAAACAT+TGG | - | chr3_4:24511693-24511712 | None:intergenic | 30.0% | |
| ACAAACCTTTAATGTCTACA+TGG | - | chr3_4:24511737-24511756 | None:intergenic | 30.0% | |
| ! | CTTTTTATTAGTTGAACCCT+TGG | - | chr3_4:24511896-24511915 | None:intergenic | 30.0% |
| ! | ATTATTAGCTTCATTCTGTG+AGG | - | chr3_4:24512016-24512035 | None:intergenic | 30.0% |
| ! | AGAATCTCTGTTTTATGTTG+TGG | + | chr3_4:24512065-24512084 | Msa0495360:intron | 30.0% |
| GAATAAGACTGTTGAAAGAT+TGG | - | chr3_4:24512136-24512155 | None:intergenic | 30.0% | |
| !! | AGTCTTATTCTACTACGAAA+CGG | + | chr3_4:24512146-24512165 | Msa0495360:CDS | 30.0% |
| AATTCTCATGTAAGCAACTA+AGG | + | chr3_4:24512284-24512303 | Msa0495360:intron | 30.0% | |
| !! | GCAACTAAGGATTGTTTTAT+TGG | + | chr3_4:24512297-24512316 | Msa0495360:intron | 30.0% |
| !! | CTAAGGATTGTTTTATTGGT+TGG | + | chr3_4:24512301-24512320 | Msa0495360:intron | 30.0% |
| ! | GATATTTTTCCTAGACACAA+CGG | - | chr3_4:24512421-24512440 | None:intergenic | 30.0% |
| CTATCTTTCAGGGATTAAAA+AGG | - | chr3_4:24512719-24512738 | None:intergenic | 30.0% | |
| TACAAGAACTAATTCAGCAT+AGG | + | chr3_4:24512872-24512891 | Msa0495360:intron | 30.0% | |
| !!! | TAGTTTGTTCCTCATTGTTT+TGG | - | chr3_4:24512919-24512938 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGCACATCTCAAT+AGG | + | chr3_4:24513031-24513050 | Msa0495360:intron | 30.0% |
| ! | AATAGGTATTACTAGCTTAG+AGG | + | chr3_4:24513048-24513067 | Msa0495360:intron | 30.0% |
| ! | ATAGGTATTACTAGCTTAGA+GGG | + | chr3_4:24513049-24513068 | Msa0495360:intron | 30.0% |
| TCCAAAGAGAAAAATCAGAA+GGG | - | chr3_4:24513391-24513410 | None:intergenic | 30.0% | |
| TTCCAAAGAGAAAAATCAGA+AGG | - | chr3_4:24513392-24513411 | None:intergenic | 30.0% | |
| ! | TCTCTTTGGAAAAAAAATGC+AGG | + | chr3_4:24513401-24513420 | Msa0495360:intron | 30.0% |
| ATAGTTGTCCAGATAAGATT+AGG | - | chr3_4:24513438-24513457 | None:intergenic | 30.0% | |
| AATAAAGTTCCTTCAATTCC+TGG | - | chr3_4:24513466-24513485 | None:intergenic | 30.0% | |
| ! | TCTTTTGACAATCTTCTGTT+AGG | + | chr3_4:24513577-24513596 | Msa0495360:CDS | 30.0% |
| ATCAGAAACAGAAAAGCAAT+TGG | - | chr3_4:24513634-24513653 | None:intergenic | 30.0% | |
| TTGATGAATACCATTGGAAT+TGG | + | chr3_4:24513696-24513715 | Msa0495360:three_prime_UTR | 30.0% | |
| ! | CACTTCAAATAGTTTTTCCT+AGG | + | chr3_4:24513726-24513745 | Msa0495360:three_prime_UTR | 30.0% |
| GGAAAATATTAGAGGAAATG+AGG | + | chr3_4:24513784-24513803 | Msa0495360:three_prime_UTR | 30.0% | |
| TCTGATTGTATCCCGATTAA+AGG | + | chr3_4:24510162-24510181 | Msa0495360:CDS | 35.0% | |
| ATCCGCTTACTTCCTTTAAT+CGG | - | chr3_4:24510177-24510196 | None:intergenic | 35.0% | |
| ! | TAGGTTTAAGTTCAACCTTG+AGG | + | chr3_4:24510247-24510266 | Msa0495360:CDS | 35.0% |
| TTCTTGACTGTGCAAAACTT+AGG | + | chr3_4:24510294-24510313 | Msa0495360:CDS | 35.0% | |
| TTGGAAGCTTATCTATATGC+AGG | - | chr3_4:24510446-24510465 | None:intergenic | 35.0% | |
| CTTCCAATCTCTCAATACTA+CGG | + | chr3_4:24510459-24510478 | Msa0495360:intron | 35.0% | |
| GTCACAAAATTAAAGCGATC+TGG | - | chr3_4:24510515-24510534 | None:intergenic | 35.0% | |
| CATTTGTCAACCTTCTATGA+TGG | + | chr3_4:24510586-24510605 | Msa0495360:intron | 35.0% | |
| ! | TTTGCGGAGTTCTCTTTTTA+AGG | + | chr3_4:24510695-24510714 | Msa0495360:intron | 35.0% |
| !!! | GCTGTTTTTGTAAGCTATTC+GGG | - | chr3_4:24510853-24510872 | None:intergenic | 35.0% |
| TCATAGAGAATAGGCATGTT+TGG | - | chr3_4:24510961-24510980 | None:intergenic | 35.0% | |
| AAGACCAAGATAATGATTGG+AGG | - | chr3_4:24511026-24511045 | None:intergenic | 35.0% | |
| GCAAAGGATTTGCATACAAA+TGG | + | chr3_4:24511219-24511238 | Msa0495360:CDS | 35.0% | |
| TTGCATACAAATGGTAGTAG+TGG | + | chr3_4:24511228-24511247 | Msa0495360:CDS | 35.0% | |
| ! | AAATCGAAGATTCTGGAGAA+AGG | + | chr3_4:24511354-24511373 | Msa0495360:CDS | 35.0% |
| ! | TTAGACAGCCAATGATTTTG+AGG | + | chr3_4:24511442-24511461 | Msa0495360:CDS | 35.0% |
| TATGAAATGTGCTCTCAACA+AGG | - | chr3_4:24511532-24511551 | None:intergenic | 35.0% | |
| CCTTTAATGTCTACATGGTT+CGG | - | chr3_4:24511732-24511751 | None:intergenic | 35.0% | |
| AATTGGCCATAATGTAAAGG+AGG | - | chr3_4:24511797-24511816 | None:intergenic | 35.0% | |
| AACAAACACACACTCTAATG+AGG | - | chr3_4:24511976-24511995 | None:intergenic | 35.0% | |
| ! | ATCTCTGTTTTATGTTGTGG+AGG | + | chr3_4:24512068-24512087 | Msa0495360:intron | 35.0% |
| AAGATTGGGAACAGTAATGT+GGG | - | chr3_4:24512121-24512140 | None:intergenic | 35.0% | |
| AAAGATTGGGAACAGTAATG+TGG | - | chr3_4:24512122-24512141 | None:intergenic | 35.0% | |
| TTCTAAGCGTCATATGCTTT+AGG | - | chr3_4:24512263-24512282 | None:intergenic | 35.0% | |
| AATCTGCAGAAGATTCAAGA+AGG | - | chr3_4:24512397-24512416 | None:intergenic | 35.0% | |
| TCTAGGAAAAATATCGCCTT+TGG | + | chr3_4:24512426-24512445 | Msa0495360:CDS | 35.0% | |
| ! | TTTTTGCTTAAGCATGTGCA+TGG | + | chr3_4:24512550-24512569 | Msa0495360:intron | 35.0% |
| !!! | ATTCGTGCTGATTTTCATGT+TGG | - | chr3_4:24512597-24512616 | None:intergenic | 35.0% |
| AACATGAAAATCAGCACGAA+TGG | + | chr3_4:24512596-24512615 | Msa0495360:intron | 35.0% | |
| AGCATAGGCCAAATATTACA+CGG | + | chr3_4:24512887-24512906 | Msa0495360:intron | 35.0% | |
| GGTTTAGTCCGTGTAATATT+TGG | - | chr3_4:24512898-24512917 | None:intergenic | 35.0% | |
| ATTTACTTTATCACTGCACC+TGG | + | chr3_4:24513001-24513020 | Msa0495360:intron | 35.0% | |
| TGCTTGAAAAAGATGAATCC+AGG | - | chr3_4:24513022-24513041 | None:intergenic | 35.0% | |
| TTACATCCTTGGAGTCTATT+TGG | + | chr3_4:24513140-24513159 | Msa0495360:intron | 35.0% | |
| ATCAATCCAAATAGACTCCA+AGG | - | chr3_4:24513149-24513168 | None:intergenic | 35.0% | |
| ATGCCTTTCCTAATCTTATC+TGG | + | chr3_4:24513427-24513446 | Msa0495360:CDS | 35.0% | |
| TGTCCAGATAAGATTAGGAA+AGG | - | chr3_4:24513433-24513452 | None:intergenic | 35.0% | |
| GTGTGTATAACCAATTCCAA+TGG | - | chr3_4:24513709-24513728 | None:intergenic | 35.0% | |
| TCCCGATTAAAGGAAGTAAG+CGG | + | chr3_4:24510172-24510191 | Msa0495360:CDS | 40.0% | |
| TCCGCTTACTTCCTTTAATC+GGG | - | chr3_4:24510176-24510195 | None:intergenic | 40.0% | |
| ! | AAGTAAGCGGATTTCGTACT+TGG | + | chr3_4:24510185-24510204 | Msa0495360:CDS | 40.0% |
| CAACCTTGAGGAATTCAACA+TGG | + | chr3_4:24510259-24510278 | Msa0495360:CDS | 40.0% | |
| ATCAACAACAACATCTGCCA+TGG | - | chr3_4:24510325-24510344 | None:intergenic | 40.0% | |
| CTTGTCATATCTTACAGCCT+CGG | - | chr3_4:24510358-24510377 | None:intergenic | 40.0% | |
| TGCACTTCATGGAATCTTTG+CGG | + | chr3_4:24510679-24510698 | Msa0495360:intron | 40.0% | |
| !!! | TTTTAAGGCCTGTTCCTGTT+TGG | + | chr3_4:24510710-24510729 | Msa0495360:intron | 40.0% |
| TAGTCAATCCAAACAGGAAC+AGG | - | chr3_4:24510721-24510740 | None:intergenic | 40.0% | |
| ! | AAGTGTTTGCTTTGTTGGTC+AGG | + | chr3_4:24510983-24511002 | Msa0495360:intron | 40.0% |
| ! | AGTGTTTGCTTTGTTGGTCA+GGG | + | chr3_4:24510984-24511003 | Msa0495360:intron | 40.0% |
| GAGACCTCCAATCATTATCT+TGG | + | chr3_4:24511019-24511038 | Msa0495360:CDS | 40.0% | |
| !! | GAATATGCGGGAGTTTGTTA+GGG | + | chr3_4:24511061-24511080 | Msa0495360:CDS | 40.0% |
| !! | AATATGCGGGAGTTTGTTAG+GGG | + | chr3_4:24511062-24511081 | Msa0495360:CDS | 40.0% |
| TACCAGCAAATCGAAGATTC+TGG | + | chr3_4:24511347-24511366 | Msa0495360:CDS | 40.0% | |
| CCGAACCATGTAGACATTAA+AGG | + | chr3_4:24511729-24511748 | Msa0495360:intron | 40.0% | |
| CTCCATCCTCCTTTACATTA+TGG | + | chr3_4:24511788-24511807 | Msa0495360:intron | 40.0% | |
| GCAAGGAAAAACCAAGACAT+AGG | - | chr3_4:24512099-24512118 | None:intergenic | 40.0% | |
| CTTATTCTACTACGAAACGG+AGG | + | chr3_4:24512149-24512168 | Msa0495360:CDS | 40.0% | |
| ! | AAAGCTCGAAGCATCATTCT+TGG | + | chr3_4:24512176-24512195 | Msa0495360:CDS | 40.0% |
| ! | AAGCTCGAAGCATCATTCTT+GGG | + | chr3_4:24512177-24512196 | Msa0495360:CDS | 40.0% |
| ! | TAGGTGACGGTTATAAACGA+AGG | - | chr3_4:24512244-24512263 | None:intergenic | 40.0% |
| TAACAGTGTTCATTCCTCAC+TGG | + | chr3_4:24512681-24512700 | Msa0495360:intron | 40.0% | |
| GGACAAAATTTAAGCCAGTG+AGG | - | chr3_4:24512698-24512717 | None:intergenic | 40.0% | |
| CGGACTAAACCAAAACAATG+AGG | + | chr3_4:24512907-24512926 | Msa0495360:intron | 40.0% | |
| TCATAAGCTCTTCACTCTTC+AGG | + | chr3_4:24513269-24513288 | Msa0495360:intron | 40.0% | |
| CATAAGCTCTTCACTCTTCA+GGG | + | chr3_4:24513270-24513289 | Msa0495360:intron | 40.0% | |
| ! | GCCCTTCTGATTTTTCTCTT+TGG | + | chr3_4:24513387-24513406 | Msa0495360:intron | 40.0% |
| AAGTTCCTTCAATTCCTGGA+GGG | - | chr3_4:24513462-24513481 | None:intergenic | 40.0% | |
| AAAGTTCCTTCAATTCCTGG+AGG | - | chr3_4:24513463-24513482 | None:intergenic | 40.0% | |
| AACAACTTGGGAACAACGAT+AGG | + | chr3_4:24513505-24513524 | Msa0495360:CDS | 40.0% | |
| ACAACTTGGGAACAACGATA+GGG | + | chr3_4:24513506-24513525 | Msa0495360:CDS | 40.0% | |
| ! | ACAACGATAGGGTCTTTTGT+AGG | + | chr3_4:24513517-24513536 | Msa0495360:CDS | 40.0% |
| CTGATACCAAAAGAAGCAAC+AGG | + | chr3_4:24513649-24513668 | Msa0495360:CDS | 40.0% | |
| GTGCCATGTTGAATTCCTCA+AGG | - | chr3_4:24510265-24510284 | None:intergenic | 45.0% | |
| GAATTCAACATGGCACCTGA+TGG | + | chr3_4:24510269-24510288 | Msa0495360:CDS | 45.0% | |
| GCACAGTCAAGAATACCATC+AGG | - | chr3_4:24510287-24510306 | None:intergenic | 45.0% | |
| GCAAAACTTAGGATCAGCCA+TGG | + | chr3_4:24510305-24510324 | Msa0495360:CDS | 45.0% | |
| ! | GGTCCGTAGTATTGAGAGAT+TGG | - | chr3_4:24510465-24510484 | None:intergenic | 45.0% |
| TCAATACTACGGACCAGTGA+AGG | + | chr3_4:24510470-24510489 | Msa0495360:intron | 45.0% | |
| TGAACCATGCATGCACTTCA+TGG | + | chr3_4:24510668-24510687 | Msa0495360:intron | 45.0% | |
| GATTCCATGAAGTGCATGCA+TGG | - | chr3_4:24510675-24510694 | None:intergenic | 45.0% | |
| AAGCTATTCGGGAGAGCTTA+TGG | - | chr3_4:24510842-24510861 | None:intergenic | 45.0% | |
| TTGGAGGTCTCCTGCAAATT+TGG | - | chr3_4:24511010-24511029 | None:intergenic | 45.0% | |
| ! | ATCTTGGTCTTCAATGGCTG+TGG | + | chr3_4:24511035-24511054 | Msa0495360:CDS | 45.0% |
| ! | TCTTGGTCTTCAATGGCTGT+GGG | + | chr3_4:24511036-24511055 | Msa0495360:CDS | 45.0% |
| ! | GGAATATGCGGGAGTTTGTT+AGG | + | chr3_4:24511060-24511079 | Msa0495360:CDS | 45.0% |
| !! | ATATGCGGGAGTTTGTTAGG+GGG | + | chr3_4:24511063-24511082 | Msa0495360:CDS | 45.0% |
| ! | CTCCAGAATCTTCGATTTGC+TGG | - | chr3_4:24511352-24511371 | None:intergenic | 45.0% |
| TCTGGAGAAAGGAGATTCCT+TGG | + | chr3_4:24511365-24511384 | Msa0495360:CDS | 45.0% | |
| GAGATTCCTTGGCAACAAAG+TGG | + | chr3_4:24511376-24511395 | Msa0495360:CDS | 45.0% | |
| ATGGAACCACTTTGTTGCCA+AGG | - | chr3_4:24511385-24511404 | None:intergenic | 45.0% | |
| ! | GAGAGCACACTTCAGATTGA+TGG | + | chr3_4:24511584-24511603 | Msa0495360:intron | 45.0% |
| ATGTCCGACATCAACACATC+TGG | + | chr3_4:24511615-24511634 | Msa0495360:intron | 45.0% | |
| TGTCCGACATCAACACATCT+GGG | + | chr3_4:24511616-24511635 | Msa0495360:intron | 45.0% | |
| ! | GTACCCAGATGTGTTGATGT+CGG | - | chr3_4:24511622-24511641 | None:intergenic | 45.0% |
| GGCCATAATGTAAAGGAGGA+TGG | - | chr3_4:24511793-24511812 | None:intergenic | 45.0% | |
| CACACACTCTAATGAGGAGT+AGG | - | chr3_4:24511970-24511989 | None:intergenic | 45.0% | |
| ! | AGCTCGAAGCATCATTCTTG+GGG | + | chr3_4:24512178-24512197 | Msa0495360:CDS | 45.0% |
| ! | GGTTGGTTAGGACTTATGCT+CGG | + | chr3_4:24512216-24512235 | Msa0495360:CDS | 45.0% |
| ! | GCGTCATATGCTTTAGGTGA+CGG | - | chr3_4:24512257-24512276 | None:intergenic | 45.0% |
| AACCCTATCTGGTACACCAA+AGG | - | chr3_4:24512445-24512464 | None:intergenic | 45.0% | |
| TGGTGTACCAGATAGGGTTA+TGG | + | chr3_4:24512446-24512465 | Msa0495360:CDS | 45.0% | |
| !! | AAGAGCACCATAACCCTATC+TGG | - | chr3_4:24512456-24512475 | None:intergenic | 45.0% |
| GATAGGGTTATGGTGCTCTT+TGG | + | chr3_4:24512456-24512475 | Msa0495360:CDS | 45.0% | |
| ! | ATAGGGTCTTTTGTAGGTGC+TGG | + | chr3_4:24513523-24513542 | Msa0495360:CDS | 45.0% |
| !! | GATGCACCTGTTGCTTCTTT+TGG | - | chr3_4:24513658-24513677 | None:intergenic | 45.0% |
| !!! | TTTGTTTATATTTTTATTTA+TGG | + | chr3_4:24511990-24512009 | Msa0495360:intron | 5.0% |
| !!! | TATATCAATTTTATTTTAAA+GGG | - | chr3_4:24512815-24512834 | None:intergenic | 5.0% |
| !!! | ATATATCAATTTTATTTTAA+AGG | - | chr3_4:24512816-24512835 | None:intergenic | 5.0% |
| !!! | TAAAATTGATATATATTTTA+TGG | + | chr3_4:24512822-24512841 | Msa0495360:intron | 5.0% |
| TGTTGATGCGATGATAGCCG+AGG | + | chr3_4:24510338-24510357 | Msa0495360:CDS | 50.0% | |
| ACATTCCCTTCGACCTTCAC+TGG | - | chr3_4:24510486-24510505 | None:intergenic | 50.0% | |
| TTGGTCAGGGCCAAATTTGC+AGG | + | chr3_4:24510997-24511016 | Msa0495360:intron | 50.0% | |
| ATGGCTGTGGGAGGAATATG+CGG | + | chr3_4:24511048-24511067 | Msa0495360:CDS | 50.0% | |
| TGGAGGACAGACCTATGTCT+TGG | + | chr3_4:24512085-24512104 | Msa0495360:intron | 50.0% | |
| TGGGAACAGTAATGTGGGCA+AGG | - | chr3_4:24512116-24512135 | None:intergenic | 50.0% | |
| ! | CGAAGCATCATTCTTGGGGA+CGG | + | chr3_4:24512182-24512201 | Msa0495360:CDS | 50.0% |
| ! | GTACGCGTTGTTGGTTGGTT+AGG | + | chr3_4:24512204-24512223 | Msa0495360:CDS | 50.0% |
| CAGGTATGCTCATGTTGCGT+TGG | + | chr3_4:24512371-24512390 | Msa0495360:intron | 50.0% | |
| TGCAGATTGCCGTTGTGTCT+AGG | + | chr3_4:24512409-24512428 | Msa0495360:CDS | 50.0% | |
| ! | TCGCCTTTGGTGTACCAGAT+AGG | + | chr3_4:24512439-24512458 | Msa0495360:CDS | 50.0% |
| ! | CGCCTTTGGTGTACCAGATA+GGG | + | chr3_4:24512440-24512459 | Msa0495360:CDS | 50.0% |
| GGTTATGGTGCTCTTTGGCT+CGG | + | chr3_4:24512461-24512480 | Msa0495360:CDS | 50.0% | |
| !! | TTTGGCTCGGCACTTGTTGA+TGG | + | chr3_4:24512474-24512493 | Msa0495360:CDS | 50.0% |
| AAGCATGTGCATGGTACGAG+AGG | + | chr3_4:24512559-24512578 | Msa0495360:intron | 50.0% | |
| CTATGCCCTCCAGGAATTGA+AGG | + | chr3_4:24513454-24513473 | Msa0495360:CDS | 50.0% | |
| !!! | GTCTTTTGTAGGTGCTGGCT+TGG | + | chr3_4:24513528-24513547 | Msa0495360:CDS | 50.0% |
| CTGTGCTCTCCCTTGTACCA+TGG | + | chr3_4:24510217-24510236 | Msa0495360:CDS | 55.0% | |
| TACGGACCAGTGAAGGTCGA+AGG | + | chr3_4:24510477-24510496 | Msa0495360:intron | 55.0% | |
| ACGGACCAGTGAAGGTCGAA+GGG | + | chr3_4:24510478-24510497 | Msa0495360:intron | 55.0% | |
| TGGTCTTCAATGGCTGTGGG+AGG | + | chr3_4:24511039-24511058 | Msa0495360:CDS | 55.0% | |
| TGGCTGTGGGAGGAATATGC+GGG | + | chr3_4:24511049-24511068 | Msa0495360:CDS | 55.0% | |
| TCTGGACAACTATGCCCTCC+AGG | + | chr3_4:24513445-24513464 | Msa0495360:CDS | 55.0% | |
| TTGGGGACGGTACGCGTTGT+TGG | + | chr3_4:24512195-24512214 | Msa0495360:CDS | 60.0% | |
| GGACGGTACGCGTTGTTGGT+TGG | + | chr3_4:24512199-24512218 | Msa0495360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 24510147 | 24513893 | 24510147 | ID=Msa0495360;Name=Msa0495360 |
| chr3_4 | mRNA | 24510147 | 24513893 | 24510147 | ID=Msa0495360-mRNA-1;Parent=Msa0495360;Name=Msa0495360-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.8|1|1|1|5|209|428 |
| chr3_4 | exon | 24510147 | 24510376 | 24510147 | ID=Msa0495360-mRNA-1:exon:5928;Parent=Msa0495360-mRNA-1 |
| chr3_4 | exon | 24511005 | 24511463 | 24511005 | ID=Msa0495360-mRNA-1:exon:5929;Parent=Msa0495360-mRNA-1 |
| chr3_4 | exon | 24512095 | 24512292 | 24512095 | ID=Msa0495360-mRNA-1:exon:5930;Parent=Msa0495360-mRNA-1 |
| chr3_4 | exon | 24512374 | 24512511 | 24512374 | ID=Msa0495360-mRNA-1:exon:5931;Parent=Msa0495360-mRNA-1 |
| chr3_4 | exon | 24513423 | 24513893 | 24513423 | ID=Msa0495360-mRNA-1:exon:5932;Parent=Msa0495360-mRNA-1 |
| chr3_4 | CDS | 24510147 | 24510376 | 24510147 | ID=Msa0495360-mRNA-1:cds;Parent=Msa0495360-mRNA-1 |
| chr3_4 | CDS | 24511005 | 24511463 | 24511005 | ID=Msa0495360-mRNA-1:cds;Parent=Msa0495360-mRNA-1 |
| chr3_4 | CDS | 24512095 | 24512292 | 24512095 | ID=Msa0495360-mRNA-1:cds;Parent=Msa0495360-mRNA-1 |
| chr3_4 | CDS | 24512374 | 24512511 | 24512374 | ID=Msa0495360-mRNA-1:cds;Parent=Msa0495360-mRNA-1 |
| chr3_4 | CDS | 24513423 | 24513684 | 24513423 | ID=Msa0495360-mRNA-1:cds;Parent=Msa0495360-mRNA-1 |
| chr3_4 | three_prime_UTR | 24513685 | 24513893 | 24513685 | ID=Msa0495360-mRNA-1:three_prime_utr;Parent=Msa0495360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
