Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459470 | XP_004500366.1 | 81.271 | 299 | 54 | 1 | 1 | 297 | 282 | 580 | 4.54e-172 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459470 | sp|Q4F883|SG101_ARATH | 40.773 | 233 | 127 | 4 | 59 | 281 | 295 | 526 | 4.29e-53 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459470 | A0A1S2Y842 | 81.271 | 299 | 54 | 1 | 1 | 297 | 282 | 580 | 2.17e-172 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011950 | Msa0459470 | 0.806361 | 8.537957e-50 | -8.615850e-47 |
| Msa0054260 | Msa0459470 | 0.806783 | 6.956863e-50 | -8.615850e-47 |
| Msa0055710 | Msa0459470 | 0.802036 | 6.787313e-49 | -8.615850e-47 |
| Msa0100090 | Msa0459470 | 0.812550 | 4.007695e-51 | -8.615850e-47 |
| Msa0212310 | Msa0459470 | 0.809516 | 1.820380e-50 | -8.615850e-47 |
| Msa0214300 | Msa0459470 | 0.816375 | 5.711871e-52 | -8.615850e-47 |
| Msa0432300 | Msa0459470 | 0.802497 | 5.454052e-49 | -8.615850e-47 |
| Msa0459470 | Msa0459560 | 0.819706 | 1.009088e-52 | -8.615850e-47 |
| Msa0459470 | Msa0476110 | 0.808681 | 2.748380e-50 | -8.615850e-47 |
| Msa0459470 | Msa0766630 | 0.807820 | 4.192582e-50 | -8.615850e-47 |
| Msa0459470 | Msa0806090 | 0.815972 | 7.028611e-52 | -8.615850e-47 |
| Msa0459470 | Msa0885190 | 0.800032 | 1.743402e-48 | -8.615850e-47 |
| Msa0459470 | Msa0885280 | 0.823709 | 1.196670e-53 | -8.615850e-47 |
| Msa0459470 | Msa0909120 | 0.801255 | 9.814010e-49 | -8.615850e-47 |
| Msa0459470 | Msa0935910 | 0.811126 | 8.183520e-51 | -8.615850e-47 |
| Msa0459470 | Msa0954910 | 0.806761 | 7.031329e-50 | -8.615850e-47 |
| Msa0459470 | Msa1082500 | 0.810604 | 1.061427e-50 | -8.615850e-47 |
| Msa0459470 | Msa1107800 | 0.819380 | 1.197565e-52 | -8.615850e-47 |
| Msa0459470 | Msa1179120 | 0.818314 | 2.090852e-52 | -8.615850e-47 |
| Msa0459470 | Msa1195920 | 0.831081 | 2.043141e-55 | -8.615850e-47 |
| Msa0459470 | Msa1229600 | 0.800251 | 1.573488e-48 | -8.615850e-47 |
| Msa0459470 | Msa1249490 | 0.812103 | 5.016531e-51 | -8.615850e-47 |
| Msa0459470 | Msa1438970 | 0.814565 | 1.444114e-51 | -8.615850e-47 |
| Msa0459470 | Msa1457040 | 0.807789 | 4.257556e-50 | -8.615850e-47 |
| Msa0340450 | Msa0459470 | 0.814476 | 1.511177e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459470 | MtrunA17_Chr3g0107671 | 75.585 | 299 | 71 | 1 | 1 | 297 | 277 | 575 | 4.46e-163 | 465 |
| Msa0459470 | MtrunA17_Chr6g0451531 | 68.456 | 298 | 88 | 5 | 3 | 297 | 283 | 577 | 3.74e-138 | 402 |
| Msa0459470 | MtrunA17_Chr6g0451541 | 65.101 | 298 | 101 | 2 | 2 | 297 | 282 | 578 | 1.18e-137 | 401 |
| Msa0459470 | MtrunA17_Chr6g0451561 | 67.568 | 296 | 92 | 3 | 3 | 297 | 283 | 575 | 5.81e-137 | 399 |
| Msa0459470 | MtrunA17_Chr6g0451511 | 57.000 | 300 | 125 | 3 | 1 | 296 | 277 | 576 | 8.10e-109 | 327 |
| Msa0459470 | MtrunA17_Chr3g0107651 | 87.050 | 139 | 15 | 1 | 1 | 139 | 1 | 136 | 5.83e-85 | 251 |
| Msa0459470 | MtrunA17_Chr8g0384621 | 27.758 | 281 | 179 | 10 | 1 | 263 | 331 | 605 | 2.68e-20 | 90.9 |
| Msa0459470 | MtrunA17_Chr3g0118251 | 27.650 | 217 | 128 | 6 | 59 | 266 | 408 | 604 | 6.47e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459470 | AT5G14930.2 | 40.773 | 233 | 127 | 4 | 59 | 281 | 295 | 526 | 4.36e-54 | 184 |
| Msa0459470 | AT3G52430.1 | 28.283 | 198 | 128 | 5 | 70 | 257 | 316 | 509 | 1.73e-14 | 73.9 |
Find 48 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGCATACTGCTTAATTT+TGG | 0.167449 | 3_3:+56074303 | None:intergenic |
| CTTCACGTCATTCAATTTCT+TGG | 0.211999 | 3_3:+56074981 | None:intergenic |
| GACCGAGTATAAAACAATTA+AGG | 0.234734 | 3_3:-56074371 | Msa0459470:CDS |
| TGACTACAGATTCTTGCTTT+TGG | 0.265156 | 3_3:-56074564 | Msa0459470:CDS |
| CACCATTTACTGGGAGAAAA+TGG | 0.274895 | 3_3:-56074833 | Msa0459470:CDS |
| GAGACTATGTTCATAATAAA+AGG | 0.278097 | 3_3:-56074681 | Msa0459470:CDS |
| AAACTCGAATCTGTTGATTA+TGG | 0.281869 | 3_3:-56075608 | None:intergenic |
| TTTCGTACCCGTTGGTTATA+TGG | 0.289900 | 3_3:-56074769 | Msa0459470:CDS |
| GGCTGAAAACATGACTAATA+AGG | 0.304536 | 3_3:-56075532 | Msa0459470:exon |
| AAAGAAATTATTTGAATTTG+AGG | 0.327326 | 3_3:-56074473 | Msa0459470:CDS |
| TGGTATTAGTTTGCAGTTGC+GGG | 0.335752 | 3_3:-56075496 | Msa0459470:CDS |
| GAACATTGATATCAATAATC+TGG | 0.353448 | 3_3:-56075067 | Msa0459470:CDS |
| TATATGGTGGGACTACTTAC+AGG | 0.360221 | 3_3:-56074753 | Msa0459470:CDS |
| GATAAAATGATATCTTCTTC+TGG | 0.362165 | 3_3:+56075007 | None:intergenic |
| CCAACTTGAATGGTACAAAA+AGG | 0.362345 | 3_3:-56074947 | Msa0459470:CDS |
| AAAATTAAGCAGTATGCTAT+AGG | 0.409666 | 3_3:-56074301 | Msa0459470:CDS |
| GTCTAAACATTTCAAACAGC+TGG | 0.420459 | 3_3:-56074659 | Msa0459470:CDS |
| GTATTGTTTGTATCACTTGT+TGG | 0.422070 | 3_3:+56074613 | None:intergenic |
| ACCGAGTATAAAACAATTAA+GGG | 0.428569 | 3_3:-56074370 | Msa0459470:CDS |
| ACGTCATTCAATTTCTTGGA+TGG | 0.457785 | 3_3:+56074985 | None:intergenic |
| ACAGCTGGAGGAATGGTTGA+TGG | 0.472388 | 3_3:-56074644 | Msa0459470:CDS |
| AGTTTGCAGTTGCGGGAACT+AGG | 0.477759 | 3_3:-56075489 | Msa0459470:CDS |
| ATTGACTTGGCAGCAGCAGC+AGG | 0.479756 | 3_3:-56075091 | Msa0459470:intron |
| AATAAGGATTCACTAGCAAC+TGG | 0.481982 | 3_3:-56075516 | Msa0459470:CDS |
| GAATGACGTGAAGGTACATA+TGG | 0.498676 | 3_3:-56074971 | Msa0459470:CDS |
| CGTACCCGTTGGTTATATGG+TGG | 0.499140 | 3_3:-56074766 | Msa0459470:CDS |
| ATTGCTGAGTACTATAGAAA+AGG | 0.502138 | 3_3:-56074709 | Msa0459470:CDS |
| GCAACTAAGAATCTACAAGT+AGG | 0.514677 | 3_3:-56074925 | Msa0459470:CDS |
| TACATATGGCCCAACTTGAA+TGG | 0.515555 | 3_3:-56074957 | Msa0459470:CDS |
| CTGGTATTAGTTTGCAGTTG+CGG | 0.516244 | 3_3:-56075497 | Msa0459470:CDS |
| ATTTCAAACAGCTGGAGGAA+TGG | 0.533404 | 3_3:-56074651 | Msa0459470:CDS |
| GTACCCGTTGGTTATATGGT+GGG | 0.534161 | 3_3:-56074765 | Msa0459470:CDS |
| TATTCACTAACCTGCATATG+TGG | 0.541900 | 3_3:+56075459 | None:intergenic |
| AGTCCCACCATATAACCAAC+GGG | 0.547594 | 3_3:+56074762 | None:intergenic |
| AGGATTGACACCACATATGC+AGG | 0.547814 | 3_3:-56075469 | Msa0459470:intron |
| CAGCTGGAGGAATGGTTGAT+GGG | 0.550882 | 3_3:-56074643 | Msa0459470:CDS |
| CAACTAAGAATCTACAAGTA+GGG | 0.560073 | 3_3:-56074924 | Msa0459470:CDS |
| TGGGACTACTTACAGGAGAA+TGG | 0.583573 | 3_3:-56074746 | Msa0459470:CDS |
| CAAGAAATTGAATGACGTGA+AGG | 0.598467 | 3_3:-56074980 | Msa0459470:CDS |
| TAAACATTTCAAACAGCTGG+AGG | 0.606786 | 3_3:-56074656 | Msa0459470:CDS |
| CAATACACGTAGAAAGAATG+TGG | 0.608038 | 3_3:-56074596 | Msa0459470:CDS |
| AAAATGATATCTTCTTCTGG+TGG | 0.609974 | 3_3:+56075010 | None:intergenic |
| TGCAAAGCAGCTATATTCGT+CGG | 0.613474 | 3_3:-56074396 | Msa0459470:CDS |
| TAGTCCCACCATATAACCAA+CGG | 0.625409 | 3_3:+56074761 | None:intergenic |
| TAGTACTCAGCAATAGCTAG+AGG | 0.637485 | 3_3:+56074718 | None:intergenic |
| GCTGAGTACTATAGAAAAGG+CGG | 0.666545 | 3_3:-56074706 | Msa0459470:CDS |
| TACACGTAGAAAGAATGTGG+AGG | 0.709499 | 3_3:-56074593 | Msa0459470:CDS |
| AAAGCAGCTATATTCGTCGG+TGG | 0.732211 | 3_3:-56074393 | Msa0459470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATTATTTGAATTTG+AGG | - | chr3_3:56075404-56075423 | Msa0459470:intron | 15.0% |
| !! | AAAGAAATTATTTGAATTTG+AGG | - | chr3_3:56075404-56075423 | Msa0459470:intron | 15.0% |
| !! | ATTATAGTGAATTCAGAAAA+AGG | - | chr3_3:56074671-56074690 | Msa0459470:CDS | 20.0% |
| !! | ATTATAGTGAATTCAGAAAA+AGG | - | chr3_3:56074671-56074690 | Msa0459470:CDS | 20.0% |
| ! | AGAAATGTCTAATACTCAAT+AGG | - | chr3_3:56074465-56074484 | Msa0459470:CDS | 25.0% |
| ! | GAACATTGATATCAATAATC+TGG | - | chr3_3:56074810-56074829 | Msa0459470:CDS | 25.0% |
| ! | GATAAAATGATATCTTCTTC+TGG | + | chr3_3:56074873-56074892 | None:intergenic | 25.0% |
| ! | GAGACTATGTTCATAATAAA+AGG | - | chr3_3:56075196-56075215 | Msa0459470:intron | 25.0% |
| ! | ACCGAGTATAAAACAATTAA+GGG | - | chr3_3:56075507-56075526 | Msa0459470:CDS | 25.0% |
| !!! | TCCCTTAATTGTTTTATACT+CGG | + | chr3_3:56075511-56075530 | None:intergenic | 25.0% |
| !! | TATAGCATACTGCTTAATTT+TGG | + | chr3_3:56075577-56075596 | None:intergenic | 25.0% |
| ! | AAAATTAAGCAGTATGCTAT+AGG | - | chr3_3:56075576-56075595 | Msa0459470:five_prime_UTR | 25.0% |
| ! | AGAAATGTCTAATACTCAAT+AGG | - | chr3_3:56074465-56074484 | Msa0459470:CDS | 25.0% |
| ! | GAACATTGATATCAATAATC+TGG | - | chr3_3:56074810-56074829 | Msa0459470:CDS | 25.0% |
| ! | GATAAAATGATATCTTCTTC+TGG | + | chr3_3:56074873-56074892 | None:intergenic | 25.0% |
| ! | GAGACTATGTTCATAATAAA+AGG | - | chr3_3:56075196-56075215 | Msa0459470:intron | 25.0% |
| ! | ACCGAGTATAAAACAATTAA+GGG | - | chr3_3:56075507-56075526 | Msa0459470:CDS | 25.0% |
| !!! | TCCCTTAATTGTTTTATACT+CGG | + | chr3_3:56075511-56075530 | None:intergenic | 25.0% |
| !! | TATAGCATACTGCTTAATTT+TGG | + | chr3_3:56075577-56075596 | None:intergenic | 25.0% |
| ! | AAAATTAAGCAGTATGCTAT+AGG | - | chr3_3:56075576-56075595 | Msa0459470:five_prime_UTR | 25.0% |
| !! | ATGCATAGATTTTTCAACTC+AGG | - | chr3_3:56074324-56074343 | Msa0459470:CDS | 30.0% |
| TAGACTCATTATGTGTAGTT+AGG | - | chr3_3:56074720-56074739 | Msa0459470:CDS | 30.0% | |
| !! | CCAAGTCAATTTTAGAAATC+AGG | + | chr3_3:56074776-56074795 | None:intergenic | 30.0% |
| !! | CCTGATTTCTAAAATTGACT+TGG | - | chr3_3:56074773-56074792 | Msa0459470:CDS | 30.0% |
| AAAATGATATCTTCTTCTGG+TGG | + | chr3_3:56074870-56074889 | None:intergenic | 30.0% | |
| !! | CTTTTTGTACCATTCAAGTT+GGG | + | chr3_3:56074932-56074951 | None:intergenic | 30.0% |
| CAACTAAGAATCTACAAGTA+GGG | - | chr3_3:56074953-56074972 | Msa0459470:CDS | 30.0% | |
| ! | AGTAAATGGTGAGCTTTTTA+TGG | + | chr3_3:56075035-56075054 | None:intergenic | 30.0% |
| ATAAAAAGCTCACCATTTAC+TGG | - | chr3_3:56075034-56075053 | Msa0459470:CDS | 30.0% | |
| TAAAAAGCTCACCATTTACT+GGG | - | chr3_3:56075035-56075054 | Msa0459470:CDS | 30.0% | |
| ATTGCTGAGTACTATAGAAA+AGG | - | chr3_3:56075168-56075187 | Msa0459470:intron | 30.0% | |
| GTATTGTTTGTATCACTTGT+TGG | + | chr3_3:56075267-56075286 | None:intergenic | 30.0% | |
| ! | ACTTTTATGCAGAGAGTTAA+AGG | - | chr3_3:56075356-56075375 | Msa0459470:intron | 30.0% |
| TTTGCACCAGAAAAATATCT+GGG | + | chr3_3:56075467-56075486 | None:intergenic | 30.0% | |
| GACCGAGTATAAAACAATTA+AGG | - | chr3_3:56075506-56075525 | Msa0459470:CDS | 30.0% | |
| !! | ATGCATAGATTTTTCAACTC+AGG | - | chr3_3:56074324-56074343 | Msa0459470:CDS | 30.0% |
| TAGACTCATTATGTGTAGTT+AGG | - | chr3_3:56074720-56074739 | Msa0459470:CDS | 30.0% | |
| !! | CCAAGTCAATTTTAGAAATC+AGG | + | chr3_3:56074776-56074795 | None:intergenic | 30.0% |
| !! | CCTGATTTCTAAAATTGACT+TGG | - | chr3_3:56074773-56074792 | Msa0459470:CDS | 30.0% |
| AAAATGATATCTTCTTCTGG+TGG | + | chr3_3:56074870-56074889 | None:intergenic | 30.0% | |
| !! | CTTTTTGTACCATTCAAGTT+GGG | + | chr3_3:56074932-56074951 | None:intergenic | 30.0% |
| CAACTAAGAATCTACAAGTA+GGG | - | chr3_3:56074953-56074972 | Msa0459470:CDS | 30.0% | |
| ! | AGTAAATGGTGAGCTTTTTA+TGG | + | chr3_3:56075035-56075054 | None:intergenic | 30.0% |
| ATAAAAAGCTCACCATTTAC+TGG | - | chr3_3:56075034-56075053 | Msa0459470:CDS | 30.0% | |
| TAAAAAGCTCACCATTTACT+GGG | - | chr3_3:56075035-56075054 | Msa0459470:CDS | 30.0% | |
| ATTGCTGAGTACTATAGAAA+AGG | - | chr3_3:56075168-56075187 | Msa0459470:intron | 30.0% | |
| GTATTGTTTGTATCACTTGT+TGG | + | chr3_3:56075267-56075286 | None:intergenic | 30.0% | |
| ! | ACTTTTATGCAGAGAGTTAA+AGG | - | chr3_3:56075356-56075375 | Msa0459470:intron | 30.0% |
| TTTGCACCAGAAAAATATCT+GGG | + | chr3_3:56075467-56075486 | None:intergenic | 30.0% | |
| GACCGAGTATAAAACAATTA+AGG | - | chr3_3:56075506-56075525 | Msa0459470:CDS | 30.0% | |
| GGCTGAAAACATGACTAATA+AGG | - | chr3_3:56074345-56074364 | Msa0459470:CDS | 35.0% | |
| AATAAGGATTCACTAGCAAC+TGG | - | chr3_3:56074361-56074380 | Msa0459470:CDS | 35.0% | |
| TATTCACTAACCTGCATATG+TGG | + | chr3_3:56074421-56074440 | None:intergenic | 35.0% | |
| TGTCTAATACTCAATAGGTG+TGG | - | chr3_3:56074470-56074489 | Msa0459470:CDS | 35.0% | |
| TATCTAAAGGGTTGTTCTGT+GGG | + | chr3_3:56074535-56074554 | None:intergenic | 35.0% | |
| ACAGAACAACCCTTTAGATA+GGG | - | chr3_3:56074535-56074554 | Msa0459470:CDS | 35.0% | |
| TATGGAACTAATCGACAATC+TGG | + | chr3_3:56074588-56074607 | None:intergenic | 35.0% | |
| ACGTCATTCAATTTCTTGGA+TGG | + | chr3_3:56074895-56074914 | None:intergenic | 35.0% | |
| CTTCACGTCATTCAATTTCT+TGG | + | chr3_3:56074899-56074918 | None:intergenic | 35.0% | |
| CAAGAAATTGAATGACGTGA+AGG | - | chr3_3:56074897-56074916 | Msa0459470:CDS | 35.0% | |
| ! | CCTTTTTGTACCATTCAAGT+TGG | + | chr3_3:56074933-56074952 | None:intergenic | 35.0% |
| CCAACTTGAATGGTACAAAA+AGG | - | chr3_3:56074930-56074949 | Msa0459470:CDS | 35.0% | |
| GCAACTAAGAATCTACAAGT+AGG | - | chr3_3:56074952-56074971 | Msa0459470:CDS | 35.0% | |
| CTACAAAAACATGAGCTCAT+TGG | - | chr3_3:56074987-56075006 | Msa0459470:CDS | 35.0% | |
| ! | AACCATTTTCTCCCAGTAAA+TGG | + | chr3_3:56075049-56075068 | None:intergenic | 35.0% |
| CAGATGAAACCTCAAAAAGA+AGG | - | chr3_3:56075078-56075097 | Msa0459470:CDS | 35.0% | |
| GTCTAAACATTTCAAACAGC+TGG | - | chr3_3:56075218-56075237 | Msa0459470:intron | 35.0% | |
| TAAACATTTCAAACAGCTGG+AGG | - | chr3_3:56075221-56075240 | Msa0459470:intron | 35.0% | |
| CAATACACGTAGAAAGAATG+TGG | - | chr3_3:56075281-56075300 | Msa0459470:intron | 35.0% | |
| ! | TGACTACAGATTCTTGCTTT+TGG | - | chr3_3:56075313-56075332 | Msa0459470:intron | 35.0% |
| !! | GACTACAGATTCTTGCTTTT+GGG | - | chr3_3:56075314-56075333 | Msa0459470:intron | 35.0% |
| TTGCACCAGAAAAATATCTG+GGG | + | chr3_3:56075466-56075485 | None:intergenic | 35.0% | |
| CTTTGCACCAGAAAAATATC+TGG | + | chr3_3:56075468-56075487 | None:intergenic | 35.0% | |
| GGCTGAAAACATGACTAATA+AGG | - | chr3_3:56074345-56074364 | Msa0459470:CDS | 35.0% | |
| AATAAGGATTCACTAGCAAC+TGG | - | chr3_3:56074361-56074380 | Msa0459470:CDS | 35.0% | |
| TATTCACTAACCTGCATATG+TGG | + | chr3_3:56074421-56074440 | None:intergenic | 35.0% | |
| TGTCTAATACTCAATAGGTG+TGG | - | chr3_3:56074470-56074489 | Msa0459470:CDS | 35.0% | |
| TATCTAAAGGGTTGTTCTGT+GGG | + | chr3_3:56074535-56074554 | None:intergenic | 35.0% | |
| ACAGAACAACCCTTTAGATA+GGG | - | chr3_3:56074535-56074554 | Msa0459470:CDS | 35.0% | |
| TATGGAACTAATCGACAATC+TGG | + | chr3_3:56074588-56074607 | None:intergenic | 35.0% | |
| ACGTCATTCAATTTCTTGGA+TGG | + | chr3_3:56074895-56074914 | None:intergenic | 35.0% | |
| CTTCACGTCATTCAATTTCT+TGG | + | chr3_3:56074899-56074918 | None:intergenic | 35.0% | |
| CAAGAAATTGAATGACGTGA+AGG | - | chr3_3:56074897-56074916 | Msa0459470:CDS | 35.0% | |
| ! | CCTTTTTGTACCATTCAAGT+TGG | + | chr3_3:56074933-56074952 | None:intergenic | 35.0% |
| CCAACTTGAATGGTACAAAA+AGG | - | chr3_3:56074930-56074949 | Msa0459470:CDS | 35.0% | |
| GCAACTAAGAATCTACAAGT+AGG | - | chr3_3:56074952-56074971 | Msa0459470:CDS | 35.0% | |
| CTACAAAAACATGAGCTCAT+TGG | - | chr3_3:56074987-56075006 | Msa0459470:CDS | 35.0% | |
| ! | AACCATTTTCTCCCAGTAAA+TGG | + | chr3_3:56075049-56075068 | None:intergenic | 35.0% |
| CAGATGAAACCTCAAAAAGA+AGG | - | chr3_3:56075078-56075097 | Msa0459470:CDS | 35.0% | |
| GTCTAAACATTTCAAACAGC+TGG | - | chr3_3:56075218-56075237 | Msa0459470:intron | 35.0% | |
| TAAACATTTCAAACAGCTGG+AGG | - | chr3_3:56075221-56075240 | Msa0459470:intron | 35.0% | |
| CAATACACGTAGAAAGAATG+TGG | - | chr3_3:56075281-56075300 | Msa0459470:intron | 35.0% | |
| ! | TGACTACAGATTCTTGCTTT+TGG | - | chr3_3:56075313-56075332 | Msa0459470:intron | 35.0% |
| !! | GACTACAGATTCTTGCTTTT+GGG | - | chr3_3:56075314-56075333 | Msa0459470:intron | 35.0% |
| TTGCACCAGAAAAATATCTG+GGG | + | chr3_3:56075466-56075485 | None:intergenic | 35.0% | |
| CTTTGCACCAGAAAAATATC+TGG | + | chr3_3:56075468-56075487 | None:intergenic | 35.0% | |
| !! | CTGGTATTAGTTTGCAGTTG+CGG | - | chr3_3:56074380-56074399 | Msa0459470:CDS | 40.0% |
| !! | TGGTATTAGTTTGCAGTTGC+GGG | - | chr3_3:56074381-56074400 | Msa0459470:CDS | 40.0% |
| ATCTAAAGGGTTGTTCTGTG+GGG | + | chr3_3:56074534-56074553 | None:intergenic | 40.0% | |
| CTATCTAAAGGGTTGTTCTG+TGG | + | chr3_3:56074536-56074555 | None:intergenic | 40.0% | |
| CACAGAACAACCCTTTAGAT+AGG | - | chr3_3:56074534-56074553 | Msa0459470:CDS | 40.0% | |
| CAGAACAACCCTTTAGATAG+GGG | - | chr3_3:56074536-56074555 | Msa0459470:CDS | 40.0% | |
| ! | TTGTCGATTAGTTCCATAGC+CGG | - | chr3_3:56074590-56074609 | Msa0459470:CDS | 40.0% |
| ACACAATGTCGAAGCTTGTA+GGG | - | chr3_3:56074614-56074633 | Msa0459470:CDS | 40.0% | |
| TCGAAGCTTGTAGGGATAAT+AGG | - | chr3_3:56074622-56074641 | Msa0459470:CDS | 40.0% | |
| CGAAGCTTGTAGGGATAATA+GGG | - | chr3_3:56074623-56074642 | Msa0459470:CDS | 40.0% | |
| GAAGCTTGTAGGGATAATAG+GGG | - | chr3_3:56074624-56074643 | Msa0459470:CDS | 40.0% | |
| ! | GAATGACGTGAAGGTACATA+TGG | - | chr3_3:56074906-56074925 | Msa0459470:CDS | 40.0% |
| TACATATGGCCCAACTTGAA+TGG | - | chr3_3:56074920-56074939 | Msa0459470:CDS | 40.0% | |
| CACCATTTACTGGGAGAAAA+TGG | - | chr3_3:56075044-56075063 | Msa0459470:CDS | 40.0% | |
| ! | AAAGCTGCACCTTCTTTTTG+AGG | + | chr3_3:56075090-56075109 | None:intergenic | 40.0% |
| ! | TTTCGTACCCGTTGGTTATA+TGG | - | chr3_3:56075108-56075127 | Msa0459470:intron | 40.0% |
| TAGTCCCACCATATAACCAA+CGG | + | chr3_3:56075119-56075138 | None:intergenic | 40.0% | |
| ! | TATATGGTGGGACTACTTAC+AGG | - | chr3_3:56075124-56075143 | Msa0459470:intron | 40.0% |
| TAGTACTCAGCAATAGCTAG+AGG | + | chr3_3:56075162-56075181 | None:intergenic | 40.0% | |
| GCTGAGTACTATAGAAAAGG+CGG | - | chr3_3:56075171-56075190 | Msa0459470:intron | 40.0% | |
| ATTTCAAACAGCTGGAGGAA+TGG | - | chr3_3:56075226-56075245 | Msa0459470:intron | 40.0% | |
| TACACGTAGAAAGAATGTGG+AGG | - | chr3_3:56075284-56075303 | Msa0459470:intron | 40.0% | |
| ! | AGTGTCCCCAGATATTTTTC+TGG | - | chr3_3:56075458-56075477 | Msa0459470:intron | 40.0% |
| TGCAAAGCAGCTATATTCGT+CGG | - | chr3_3:56075481-56075500 | Msa0459470:CDS | 40.0% | |
| !! | CTGGTATTAGTTTGCAGTTG+CGG | - | chr3_3:56074380-56074399 | Msa0459470:CDS | 40.0% |
| !! | TGGTATTAGTTTGCAGTTGC+GGG | - | chr3_3:56074381-56074400 | Msa0459470:CDS | 40.0% |
| ATCTAAAGGGTTGTTCTGTG+GGG | + | chr3_3:56074534-56074553 | None:intergenic | 40.0% | |
| CTATCTAAAGGGTTGTTCTG+TGG | + | chr3_3:56074536-56074555 | None:intergenic | 40.0% | |
| CACAGAACAACCCTTTAGAT+AGG | - | chr3_3:56074534-56074553 | Msa0459470:CDS | 40.0% | |
| CAGAACAACCCTTTAGATAG+GGG | - | chr3_3:56074536-56074555 | Msa0459470:CDS | 40.0% | |
| ! | TTGTCGATTAGTTCCATAGC+CGG | - | chr3_3:56074590-56074609 | Msa0459470:CDS | 40.0% |
| ACACAATGTCGAAGCTTGTA+GGG | - | chr3_3:56074614-56074633 | Msa0459470:CDS | 40.0% | |
| TCGAAGCTTGTAGGGATAAT+AGG | - | chr3_3:56074622-56074641 | Msa0459470:CDS | 40.0% | |
| CGAAGCTTGTAGGGATAATA+GGG | - | chr3_3:56074623-56074642 | Msa0459470:CDS | 40.0% | |
| GAAGCTTGTAGGGATAATAG+GGG | - | chr3_3:56074624-56074643 | Msa0459470:CDS | 40.0% | |
| ! | GAATGACGTGAAGGTACATA+TGG | - | chr3_3:56074906-56074925 | Msa0459470:CDS | 40.0% |
| TACATATGGCCCAACTTGAA+TGG | - | chr3_3:56074920-56074939 | Msa0459470:CDS | 40.0% | |
| CACCATTTACTGGGAGAAAA+TGG | - | chr3_3:56075044-56075063 | Msa0459470:CDS | 40.0% | |
| ! | AAAGCTGCACCTTCTTTTTG+AGG | + | chr3_3:56075090-56075109 | None:intergenic | 40.0% |
| ! | TTTCGTACCCGTTGGTTATA+TGG | - | chr3_3:56075108-56075127 | Msa0459470:intron | 40.0% |
| TAGTCCCACCATATAACCAA+CGG | + | chr3_3:56075119-56075138 | None:intergenic | 40.0% | |
| ! | TATATGGTGGGACTACTTAC+AGG | - | chr3_3:56075124-56075143 | Msa0459470:intron | 40.0% |
| TAGTACTCAGCAATAGCTAG+AGG | + | chr3_3:56075162-56075181 | None:intergenic | 40.0% | |
| GCTGAGTACTATAGAAAAGG+CGG | - | chr3_3:56075171-56075190 | Msa0459470:intron | 40.0% | |
| ATTTCAAACAGCTGGAGGAA+TGG | - | chr3_3:56075226-56075245 | Msa0459470:intron | 40.0% | |
| TACACGTAGAAAGAATGTGG+AGG | - | chr3_3:56075284-56075303 | Msa0459470:intron | 40.0% | |
| ! | AGTGTCCCCAGATATTTTTC+TGG | - | chr3_3:56075458-56075477 | Msa0459470:intron | 40.0% |
| TGCAAAGCAGCTATATTCGT+CGG | - | chr3_3:56075481-56075500 | Msa0459470:CDS | 40.0% | |
| AGGATTGACACCACATATGC+AGG | - | chr3_3:56074408-56074427 | Msa0459470:CDS | 45.0% | |
| GATCCTCACCCCTATCTAAA+GGG | + | chr3_3:56074547-56074566 | None:intergenic | 45.0% | |
| AGATCCTCACCCCTATCTAA+AGG | + | chr3_3:56074548-56074567 | None:intergenic | 45.0% | |
| CACACAATGTCGAAGCTTGT+AGG | - | chr3_3:56074613-56074632 | Msa0459470:CDS | 45.0% | |
| ! | GTACCCGTTGGTTATATGGT+GGG | - | chr3_3:56075112-56075131 | Msa0459470:intron | 45.0% |
| AGTCCCACCATATAACCAAC+GGG | + | chr3_3:56075118-56075137 | None:intergenic | 45.0% | |
| TGGGACTACTTACAGGAGAA+TGG | - | chr3_3:56075131-56075150 | Msa0459470:intron | 45.0% | |
| ! | CTTTTGGGCACATGTTGAAG+AGG | - | chr3_3:56075329-56075348 | Msa0459470:intron | 45.0% |
| AAAGCAGCTATATTCGTCGG+TGG | - | chr3_3:56075484-56075503 | Msa0459470:CDS | 45.0% | |
| AGGATTGACACCACATATGC+AGG | - | chr3_3:56074408-56074427 | Msa0459470:CDS | 45.0% | |
| GATCCTCACCCCTATCTAAA+GGG | + | chr3_3:56074547-56074566 | None:intergenic | 45.0% | |
| AGATCCTCACCCCTATCTAA+AGG | + | chr3_3:56074548-56074567 | None:intergenic | 45.0% | |
| CACACAATGTCGAAGCTTGT+AGG | - | chr3_3:56074613-56074632 | Msa0459470:CDS | 45.0% | |
| ! | GTACCCGTTGGTTATATGGT+GGG | - | chr3_3:56075112-56075131 | Msa0459470:intron | 45.0% |
| AGTCCCACCATATAACCAAC+GGG | + | chr3_3:56075118-56075137 | None:intergenic | 45.0% | |
| TGGGACTACTTACAGGAGAA+TGG | - | chr3_3:56075131-56075150 | Msa0459470:intron | 45.0% | |
| ! | CTTTTGGGCACATGTTGAAG+AGG | - | chr3_3:56075329-56075348 | Msa0459470:intron | 45.0% |
| AAAGCAGCTATATTCGTCGG+TGG | - | chr3_3:56075484-56075503 | Msa0459470:CDS | 45.0% | |
| AGTTTGCAGTTGCGGGAACT+AGG | - | chr3_3:56074388-56074407 | Msa0459470:CDS | 50.0% | |
| CAACCCTTTAGATAGGGGTG+AGG | - | chr3_3:56074541-56074560 | Msa0459470:CDS | 50.0% | |
| CAAGCTTCGACATTGTGTGC+CGG | + | chr3_3:56074612-56074631 | None:intergenic | 50.0% | |
| ! | CGTACCCGTTGGTTATATGG+TGG | - | chr3_3:56075111-56075130 | Msa0459470:intron | 50.0% |
| ACAGCTGGAGGAATGGTTGA+TGG | - | chr3_3:56075233-56075252 | Msa0459470:intron | 50.0% | |
| CAGCTGGAGGAATGGTTGAT+GGG | - | chr3_3:56075234-56075253 | Msa0459470:intron | 50.0% | |
| AGTTTGCAGTTGCGGGAACT+AGG | - | chr3_3:56074388-56074407 | Msa0459470:CDS | 50.0% | |
| CAACCCTTTAGATAGGGGTG+AGG | - | chr3_3:56074541-56074560 | Msa0459470:CDS | 50.0% | |
| CAAGCTTCGACATTGTGTGC+CGG | + | chr3_3:56074612-56074631 | None:intergenic | 50.0% | |
| ! | CGTACCCGTTGGTTATATGG+TGG | - | chr3_3:56075111-56075130 | Msa0459470:intron | 50.0% |
| ACAGCTGGAGGAATGGTTGA+TGG | - | chr3_3:56075233-56075252 | Msa0459470:intron | 50.0% | |
| CAGCTGGAGGAATGGTTGAT+GGG | - | chr3_3:56075234-56075253 | Msa0459470:intron | 50.0% | |
| GACAACACAGTGCACGCACA+AGG | - | chr3_3:56074502-56074521 | Msa0459470:CDS | 55.0% | |
| !! | TCGACATTGTGTGCCGGCTA+TGG | + | chr3_3:56074606-56074625 | None:intergenic | 55.0% |
| !! | ATTGACTTGGCAGCAGCAGC+AGG | - | chr3_3:56074786-56074805 | Msa0459470:CDS | 55.0% |
| ! | GTGCAGCTTTTCGTACCCGT+TGG | - | chr3_3:56075100-56075119 | Msa0459470:intron | 55.0% |
| GACAACACAGTGCACGCACA+AGG | - | chr3_3:56074502-56074521 | Msa0459470:CDS | 55.0% | |
| !! | TCGACATTGTGTGCCGGCTA+TGG | + | chr3_3:56074606-56074625 | None:intergenic | 55.0% |
| !! | ATTGACTTGGCAGCAGCAGC+AGG | - | chr3_3:56074786-56074805 | Msa0459470:CDS | 55.0% |
| ! | GTGCAGCTTTTCGTACCCGT+TGG | - | chr3_3:56075100-56075119 | Msa0459470:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 56074282 | 56075617 | 56074282 | ID=Msa0459470;Name=Msa0459470 |
| chr3_3 | mRNA | 56074282 | 56075617 | 56074282 | ID=Msa0459470-mRNA-1;Parent=Msa0459470;Name=Msa0459470-mRNA-1;_AED=0.36;_eAED=0.36;_QI=73|1|0.5|1|1|1|2|0|297 |
| chr3_3 | exon | 56074282 | 56075100 | 56074282 | ID=Msa0459470-mRNA-1:exon:11135;Parent=Msa0459470-mRNA-1 |
| chr3_3 | exon | 56075470 | 56075617 | 56075470 | ID=Msa0459470-mRNA-1:exon:11134;Parent=Msa0459470-mRNA-1 |
| chr3_3 | five_prime_UTR | 56075545 | 56075617 | 56075545 | ID=Msa0459470-mRNA-1:five_prime_utr;Parent=Msa0459470-mRNA-1 |
| chr3_3 | CDS | 56075470 | 56075544 | 56075470 | ID=Msa0459470-mRNA-1:cds;Parent=Msa0459470-mRNA-1 |
| chr3_3 | CDS | 56074282 | 56075100 | 56074282 | ID=Msa0459470-mRNA-1:cds;Parent=Msa0459470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
