AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472680 MtrunA17_Chr3g0128421 96.759 648 20 1 1 647 1 648 0.0 1308
Msa0472680 MtrunA17_Chr3g0115061 28.105 153 93 4 459 596 182 332 3.95e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472680 AT1G33400.1 44.864 662 346 6 1 647 1 658 0.0 576
Msa0472680 AT1G33400.2 44.677 620 324 6 43 647 55 670 0.0 555
Msa0472680 AT1G33400.3 44.040 495 258 6 168 647 2 492 2.25e-142 430

Find 121 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCATTTGAAAGTAAAT+TGG 0.199937 3_3:+75094721 Msa0472680:CDS
AACACTGCGCCAGAACAATT+TGG 0.217761 3_3:-75096608 None:intergenic
TTTGCCCACCTGCCTTTATT+TGG 0.225137 3_3:-75094324 None:intergenic
AGAAACTCAAACAAGCAATT+AGG 0.229319 3_3:+75091174 Msa0472680:CDS
TATTGTCTTAAACATTCTTA+TGG 0.241604 3_3:+75094773 Msa0472680:CDS
GTGAGGGAAAAGCTGTTATT+AGG 0.265031 3_3:-75097065 None:intergenic
TACTACTATATTTGTGCTCT+TGG 0.267628 3_3:-75092487 None:intergenic
TATGAACAGAAGCGTCATTT+TGG 0.281117 3_3:-75096929 None:intergenic
TCATACAATTCACTTTAATC+TGG 0.303169 3_3:-75095076 None:intergenic
AAGGTACACACTGTTCAATT+TGG 0.306026 3_3:+75097040 Msa0472680:CDS
AAGCCTTAATATGCATAAAA+AGG 0.306459 3_3:+75097021 Msa0472680:CDS
TGGTGTAGAGGAAGAAGATA+TGG 0.318513 3_3:+75091127 Msa0472680:exon
AGAAAATATGCATGAACATT+TGG 0.324630 3_3:-75095453 None:intergenic
ACTGCCTTCTGACATAGTTT+TGG 0.338485 3_3:+75094507 Msa0472680:CDS
ACCATGCCTCTTCCTTTATC+AGG 0.346989 3_3:-75093670 None:intergenic
GAAACTCAAACAAGCAATTA+GGG 0.353034 3_3:+75091175 Msa0472680:CDS
ATTGCTTGTTTGAGTTTCTC+TGG 0.360886 3_3:-75091170 None:intergenic
ACTATTGAATAGTTTCCAAT+TGG 0.367364 3_3:+75097109 Msa0472680:CDS
CACCTGCCTTTATTTGGCAT+TGG 0.370556 3_3:-75094318 None:intergenic
CTATTGAATAGTTTCCAATT+GGG 0.382463 3_3:+75097110 Msa0472680:CDS
CTATATTTGTGCTCTTGGAT+TGG 0.397564 3_3:-75092482 None:intergenic
ACACTGCGCCAGAACAATTT+GGG 0.399716 3_3:-75096607 None:intergenic
GGCAAAGGAAGAAGAAAGAG+AGG 0.401323 3_3:+75091086 Msa0472680:five_prime_UTR
TGATATAGAGATTCCATTGA+TGG 0.401639 3_3:-75094807 None:intergenic
GGAGCTATGCTTGCCATCAA+TGG 0.404119 3_3:+75094794 Msa0472680:CDS
CTCGCACCAATGCCAAATAA+AGG 0.406668 3_3:+75094312 Msa0472680:CDS
GGCAAAGCTATTTATAAAGT+TGG 0.408738 3_3:+75095405 Msa0472680:CDS
TTGTTTCTTACCATAGCATA+TGG 0.409749 3_3:-75093739 None:intergenic
AGCATATTCAGCAAGATTGT+TGG 0.410224 3_3:-75094392 None:intergenic
TCAATTTCACCAACTTCAAA+AGG 0.415930 3_3:-75091606 None:intergenic
TGTGTGAACCCAAATTGTTC+TGG 0.426197 3_3:+75096599 Msa0472680:CDS
ATGCAGTTCTTACCGTGATC+TGG 0.426263 3_3:+75096974 Msa0472680:CDS
GCATATTCAGCAAGATTGTT+GGG 0.430584 3_3:-75094391 None:intergenic
GAATCCAATTTACTTTCAAA+TGG 0.433870 3_3:-75094725 None:intergenic
GTAGGTCGTTCAAGCAATAA+TGG 0.435815 3_3:-75094243 None:intergenic
TTTAACTAGTAATGTGGAAC+AGG 0.443391 3_3:+75095178 Msa0472680:CDS
GAACATTTGGTTGGCAAGAA+TGG 0.445371 3_3:-75095440 None:intergenic
AAATGTACACTGGAATGAAA+TGG 0.446196 3_3:-75095158 None:intergenic
ACAACACAAGCCGTAGCAGC+TGG 0.447881 3_3:+75095498 Msa0472680:CDS
AATGATTGTGAGCAAAAGAT+TGG 0.447994 3_3:+75094433 Msa0472680:CDS
GTAGTACGTACCTGGTGAAA+AGG 0.449674 3_3:-75091263 None:intergenic
CCGCCATCTGATGTTTCACC+AGG 0.449958 3_3:+75093694 Msa0472680:CDS
GCCTCTTCCTTTATCAGGTA+CGG 0.454469 3_3:-75093665 None:intergenic
GCATTTCATTGTCAATGTAC+TGG 0.457687 3_3:+75096530 Msa0472680:CDS
GGAAAGGCAAATATTGCATT+GGG 0.466884 3_3:+75092357 Msa0472680:CDS
TCTGGCATCAGGCATGGTAT+AGG 0.467429 3_3:+75092331 Msa0472680:intron
AAACACACCTTTGAATAGCT+TGG 0.472303 3_3:-75091864 None:intergenic
CATACAATTCACTTTAATCT+GGG 0.482197 3_3:-75095075 None:intergenic
CATGGACTGTCAGATCAGTC+TGG 0.483310 3_3:+75095128 Msa0472680:CDS
ACACTTTGCAGCTTTATTTG+AGG 0.485080 3_3:-75093640 None:intergenic
AATATGCATGAACATTTGGT+TGG 0.489714 3_3:-75095449 None:intergenic
TGAGGGAAAAGCTGTTATTA+GGG 0.491086 3_3:-75097064 None:intergenic
AGTGTCTCCGTACCTGATAA+AGG 0.493636 3_3:+75093658 Msa0472680:CDS
AAGAGTGTCGAATCATCAAC+AGG 0.494373 3_3:+75092417 Msa0472680:CDS
TATTGAATAGTTTCCAATTG+GGG 0.496004 3_3:+75097111 Msa0472680:CDS
CGTAGCAGCTGGGTGTCAGC+TGG 0.497449 3_3:+75095509 Msa0472680:CDS
AAATTGTTCTGGCGCAGTGT+TGG 0.499251 3_3:+75096610 Msa0472680:CDS
ATGTCAGAAGGCAGTACAGC+AGG 0.510667 3_3:-75094499 None:intergenic
GGCTTTAGATTATTATACTC+AGG 0.514932 3_3:+75091466 Msa0472680:CDS
AAGAGAGGGAAAGAAAACAA+AGG 0.526427 3_3:+75091101 Msa0472680:five_prime_UTR
TGATGTTTCACCAGGTTCGT+TGG 0.526556 3_3:+75093702 Msa0472680:CDS
AAACAAAGGAAGTGGTGTAG+AGG 0.527368 3_3:+75091115 Msa0472680:five_prime_UTR
TAGTACGTACCTGGTGAAAA+GGG 0.527455 3_3:-75091262 None:intergenic
CTCTAATGCTGATTATGTCA+AGG 0.527726 3_3:+75091445 Msa0472680:CDS
TGTCAGCTGGAATTGTCTTA+CGG 0.527745 3_3:+75095522 Msa0472680:CDS
AGGAAAGGCAAATATTGCAT+TGG 0.532015 3_3:+75092356 Msa0472680:CDS
GGGAAAGAAAACAAAGGAAG+TGG 0.532284 3_3:+75091107 Msa0472680:five_prime_UTR
GGAATTGTCTTACGGTCCAC+AGG 0.539785 3_3:+75095530 Msa0472680:CDS
TTAAAATCAATAGACGCTCA+TGG 0.541128 3_3:+75095110 Msa0472680:CDS
AAGAACGTAATTATCTTCTG+TGG 0.542033 3_3:-75094359 None:intergenic
CAATGGAATCTCTATATCAC+AGG 0.542199 3_3:+75094811 Msa0472680:CDS
CACGAGAGGTGGTTTGATGT+TGG 0.542732 3_3:+75091065 None:intergenic
TGCTGAAGAACCATATGCTA+TGG 0.542990 3_3:+75093729 Msa0472680:CDS
CTGCATTTCAAACAGACTCC+AGG 0.545321 3_3:-75096957 None:intergenic
GGAGAACAGCTTGAGTACTA+CGG 0.546828 3_3:+75092524 Msa0472680:CDS
TTCCCGCACAGAGCATAGCT+AGG 0.547122 3_3:-75091374 None:intergenic
ATACAAGGAACTCTATCAGC+AGG 0.548739 3_3:-75094265 None:intergenic
CACCAATGCCAAATAAAGGC+AGG 0.551316 3_3:+75094316 Msa0472680:CDS
CAGCTGACACCCAGCTGCTA+CGG 0.561855 3_3:-75095508 None:intergenic
AGTAGTACAGCCGCGACAGA+AGG 0.563195 3_3:+75092503 Msa0472680:CDS
ACCCTAGCTATGCTCTGTGC+GGG 0.563516 3_3:+75091372 Msa0472680:CDS
TCCGTACCTGATAAAGGAAG+AGG 0.569385 3_3:+75093664 Msa0472680:CDS
GAGAACAGCTTGAGTACTAC+GGG 0.569449 3_3:+75092525 Msa0472680:CDS
TCCCGCACAGAGCATAGCTA+GGG 0.570994 3_3:-75091373 None:intergenic
TCAGCATGAACCAACGAACC+TGG 0.571881 3_3:-75093712 None:intergenic
GATATGTCCAAGCTATTCAA+AGG 0.573360 3_3:+75091857 Msa0472680:CDS
ATGAATGTCAAGGAGTGCAT+TGG 0.576376 3_3:+75094476 Msa0472680:CDS
TTACTTTATCAGCAACAGCT+AGG 0.576576 3_3:-75096673 None:intergenic
AGGTGGTTTGATGTTGGCAA+AGG 0.584111 3_3:+75091071 None:intergenic
CAATGCCAAATAAAGGCAGG+TGG 0.596184 3_3:+75094319 Msa0472680:CDS
ATTGAATAGTTTCCAATTGG+GGG 0.596328 3_3:+75097112 Msa0472680:CDS
CCAGCCAAAACTATGTCAGA+AGG 0.604974 3_3:-75094511 None:intergenic
TGTACATTTAACTAGTAATG+TGG 0.607675 3_3:+75095172 Msa0472680:CDS
TGAAATATAGGCATTACGAA+AGG 0.609774 3_3:+75091581 Msa0472680:intron
ATTACTAGTTAAATGTACAC+TGG 0.610954 3_3:-75095168 None:intergenic
TGCATTTCAAACAGACTCCA+GGG 0.616596 3_3:-75096956 None:intergenic
GAACATAAACATGAATGTCA+AGG 0.620275 3_3:+75094466 Msa0472680:CDS
CATTGGTGCGAGCAGTACAA+TGG 0.620389 3_3:-75094301 None:intergenic
CAACACAAGCCGTAGCAGCT+GGG 0.623688 3_3:+75095499 Msa0472680:CDS
ACCTGATAAAGGAAGAGGCA+TGG 0.627081 3_3:+75093669 Msa0472680:CDS
GAAGATATGGAGACTCTGAA+AGG 0.628550 3_3:+75091140 Msa0472680:exon
GCAAAGGAAGAAGAAAGAGA+GGG 0.630138 3_3:+75091087 Msa0472680:five_prime_UTR
GTGTCGAATCATCAACAGGA+GGG 0.630754 3_3:+75092421 Msa0472680:CDS
GGTATTGAACACGATATACA+AGG 0.636863 3_3:-75094280 None:intergenic
TATATCTCCTAGGTCAGAGT+GGG 0.639961 3_3:+75095384 Msa0472680:intron
CACGTGAAGACTCCAGATCA+CGG 0.641430 3_3:-75096986 None:intergenic
GCTTCTGTTCATATTCACCC+TGG 0.643407 3_3:+75096939 Msa0472680:CDS
GCGTTGAAATATAAGCAGCT+TGG 0.647283 3_3:+75091410 Msa0472680:CDS
GACCCTAGCTATGCTCTGTG+CGG 0.649554 3_3:+75091371 Msa0472680:CDS
AATGCCAAATAAAGGCAGGT+GGG 0.655407 3_3:+75094320 Msa0472680:CDS
AAGGAACTCTATCAGCAGGT+AGG 0.661361 3_3:-75094261 None:intergenic
CATCAGGCATGGTATAGGAG+AGG 0.668519 3_3:+75092336 Msa0472680:intron
AAGACAATATAACAATACAA+TGG 0.671651 3_3:-75094759 None:intergenic
GAACCTGGTGAAACATCAGA+TGG 0.672386 3_3:-75093697 None:intergenic
TCACACAATGAAAAGCATTG+AGG 0.676894 3_3:-75096583 None:intergenic
AAGCTGTTCTCCTTCTGTCG+CGG 0.691374 3_3:-75092513 None:intergenic
AGTGTCGAATCATCAACAGG+AGG 0.693713 3_3:+75092420 Msa0472680:CDS
GGACTGTCAGATCAGTCTGG+AGG 0.695431 3_3:+75095131 Msa0472680:CDS
GGCATGGTATAGGAGAGGAA+AGG 0.699336 3_3:+75092341 Msa0472680:intron
CCTGGTGAAACATCAGATGG+CGG 0.706873 3_3:-75093694 None:intergenic
TTATATCTCCTAGGTCAGAG+TGG 0.711387 3_3:+75095383 Msa0472680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTCAATATGATA+GGG + chr3_3:75094944-75094963 Msa0472680:intron 10.0%
!!! ATTATTATTACTTAGTTTTT+TGG + chr3_3:75095582-75095601 Msa0472680:intron 10.0%
!! AAATAAAATAAATCAAAACA+TGG + chr3_3:75096360-75096379 Msa0472680:intron 10.0%
!! TTATTAATAGTGAGAAATTA+GGG - chr3_3:75091310-75091329 None:intergenic 15.0%
!! AATAAACTAAGATTACAAAA+AGG - chr3_3:75091901-75091920 None:intergenic 15.0%
!! ATTTATCAAAACAAAGTAAT+TGG + chr3_3:75092056-75092075 Msa0472680:intron 15.0%
!! AAAGATTGAAATATTTATGT+CGG + chr3_3:75092867-75092886 Msa0472680:intron 15.0%
!!! TTTTTTTCCTTTGTTTTTTT+GGG + chr3_3:75094848-75094867 Msa0472680:intron 15.0%
!!! GAATATTTTTTCAATATGAT+AGG + chr3_3:75094943-75094962 Msa0472680:intron 15.0%
!! TATGATAATTTAGACATTAT+TGG + chr3_3:75095306-75095325 Msa0472680:intron 15.0%
!! AACTAAGTAATAATAATTAC+AGG - chr3_3:75095579-75095598 None:intergenic 15.0%
!!! TTTTATTTTTTTATGTTGAG+TGG - chr3_3:75096348-75096367 None:intergenic 15.0%
!!! AAAAAATGAAGTGTTTTAAA+GGG - chr3_3:75096862-75096881 None:intergenic 15.0%
!! GTTATTAATAGTGAGAAATT+AGG - chr3_3:75091311-75091330 None:intergenic 20.0%
!!! TTCTCTCTTTTCTTTATTTT+TGG + chr3_3:75091534-75091553 Msa0472680:intron 20.0%
!!! GTTTTTGCAATTTGAAATAT+AGG + chr3_3:75091569-75091588 Msa0472680:intron 20.0%
!! TTAAAAAGTGATTATGAATG+TGG - chr3_3:75091717-75091736 None:intergenic 20.0%
!! CTTAGTTTATTTGTACTATT+AGG + chr3_3:75091910-75091929 Msa0472680:intron 20.0%
!!! TTTTGATAACTTCATTATTC+TGG + chr3_3:75092313-75092332 Msa0472680:intron 20.0%
!! TAAATATTTCAATCTTTCCT+CGG - chr3_3:75092864-75092883 None:intergenic 20.0%
!!! ATTTTCTCATGCTTAATTTT+GGG - chr3_3:75092937-75092956 None:intergenic 20.0%
!!! TATTTTCTCATGCTTAATTT+TGG - chr3_3:75092938-75092957 None:intergenic 20.0%
!! ATTTAATTCTATAAGGAAGA+GGG - chr3_3:75093036-75093055 None:intergenic 20.0%
!! AATTTAATTCTATAAGGAAG+AGG - chr3_3:75093037-75093056 None:intergenic 20.0%
!! GTGCATAATTTAATTCTATA+AGG - chr3_3:75093043-75093062 None:intergenic 20.0%
!!! GCATATTAGTTTCTTAATAT+GGG - chr3_3:75093384-75093403 None:intergenic 20.0%
!!! AGCATATTAGTTTCTTAATA+TGG - chr3_3:75093385-75093404 None:intergenic 20.0%
!!! ATTCAATCCTATTTTACATA+TGG + chr3_3:75093494-75093513 Msa0472680:intron 20.0%
!! ATCTTTCATAAATAAATGCA+AGG - chr3_3:75093554-75093573 None:intergenic 20.0%
!!! ACAAAATGCTTTTAGATAAA+TGG + chr3_3:75093808-75093827 Msa0472680:intron 20.0%
!!! GAATTTGCTTTGAATTAATT+GGG - chr3_3:75094026-75094045 None:intergenic 20.0%
!!! TGAATTTGCTTTGAATTAAT+TGG - chr3_3:75094027-75094046 None:intergenic 20.0%
!! GGATTAATGCTTATAAAATA+TGG - chr3_3:75094130-75094149 None:intergenic 20.0%
!! AAGACAATATAACAATACAA+TGG - chr3_3:75094762-75094781 None:intergenic 20.0%
!! TATTGTCTTAAACATTCTTA+TGG + chr3_3:75094773-75094792 Msa0472680:CDS 20.0%
!!! CTTTTTTTCCTTTGTTTTTT+TGG + chr3_3:75094847-75094866 Msa0472680:intron 20.0%
!! AAAATGCATAAATATAGAAC+AGG - chr3_3:75095270-75095289 None:intergenic 20.0%
!! AATGTCTAAATTATCATAGT+AGG - chr3_3:75095304-75095323 None:intergenic 20.0%
!! ATTTCATAATTAGCACATTT+GGG + chr3_3:75095795-75095814 Msa0472680:intron 20.0%
!!! ATTCATCTTTTAGAAAACTT+TGG - chr3_3:75096508-75096527 None:intergenic 20.0%
!!! GAAAAAATGAAGTGTTTTAA+AGG - chr3_3:75096863-75096882 None:intergenic 20.0%
!!! TTAAAACACTTCATTTTTTC+AGG + chr3_3:75096863-75096882 Msa0472680:intron 20.0%
!!! TAGTTCTGAATAATTTTCAA+AGG - chr3_3:75097090-75097109 None:intergenic 20.0%
! ATTAGGGATTTAGTTGAAAT+GGG - chr3_3:75091294-75091313 None:intergenic 25.0%
! AATTAGGGATTTAGTTGAAA+TGG - chr3_3:75091295-75091314 None:intergenic 25.0%
! TTTCAAATTACGTTTGTAAG+TGG - chr3_3:75092138-75092157 None:intergenic 25.0%
! TAAATCAACATACTGTTTCA+AGG - chr3_3:75092793-75092812 None:intergenic 25.0%
!!! ATGTTGATTTAAGATACATG+TGG + chr3_3:75092802-75092821 Msa0472680:intron 25.0%
! TATTTACCTACTATTGCTAT+AGG - chr3_3:75092835-75092854 None:intergenic 25.0%
! TATAGCAATAGTAGGTAAAT+AGG + chr3_3:75092834-75092853 Msa0472680:intron 25.0%
! ATAGCAATAGTAGGTAAATA+GGG + chr3_3:75092835-75092854 Msa0472680:intron 25.0%
!! TTTTCTCATGCTTAATTTTG+GGG - chr3_3:75092936-75092955 None:intergenic 25.0%
! GAATTAAATTATGCACCTTA+TGG + chr3_3:75093047-75093066 Msa0472680:intron 25.0%
! TGTAAAATAGGATTGAATAG+CGG - chr3_3:75093492-75093511 None:intergenic 25.0%
! GATTACACCATATGTAAAAT+AGG - chr3_3:75093504-75093523 None:intergenic 25.0%
! AAAAGGAGAGGAAAAATAAA+TGG - chr3_3:75093577-75093596 None:intergenic 25.0%
!!! TCCTTTTTGAGATAATAAGA+TGG + chr3_3:75093590-75093609 Msa0472680:intron 25.0%
! ACCATCTTATTATCTCAAAA+AGG - chr3_3:75093594-75093613 None:intergenic 25.0%
!!! TTGATACTGTTTTTCTTTTC+AGG + chr3_3:75094189-75094208 Msa0472680:intron 25.0%
! CATCATTGTTATCTGATTAT+AGG + chr3_3:75094638-75094657 Msa0472680:intron 25.0%
!! TATGCCATTTGAAAGTAAAT+TGG + chr3_3:75094721-75094740 Msa0472680:CDS 25.0%
! GAATCCAATTTACTTTCAAA+TGG - chr3_3:75094728-75094747 None:intergenic 25.0%
! AAAAAATATTCTGCTACACA+AGG - chr3_3:75094934-75094953 None:intergenic 25.0%
! CATACAATTCACTTTAATCT+GGG - chr3_3:75095078-75095097 None:intergenic 25.0%
! TCATACAATTCACTTTAATC+TGG - chr3_3:75095079-75095098 None:intergenic 25.0%
! ATTACTAGTTAAATGTACAC+TGG - chr3_3:75095171-75095190 None:intergenic 25.0%
! TGTACATTTAACTAGTAATG+TGG + chr3_3:75095172-75095191 Msa0472680:CDS 25.0%
! AGAAAATATGCATGAACATT+TGG - chr3_3:75095456-75095475 None:intergenic 25.0%
! GATTTCATAATTAGCACATT+TGG + chr3_3:75095794-75095813 Msa0472680:intron 25.0%
! TTTCATAATTAGCACATTTG+GGG + chr3_3:75095796-75095815 Msa0472680:intron 25.0%
! GCTCAAAATAATATAGTAGT+AGG + chr3_3:75095981-75096000 Msa0472680:intron 25.0%
! ATTATCTTATACCAAGAGTT+AGG + chr3_3:75096040-75096059 Msa0472680:intron 25.0%
! TTGTTACAATTGCTTCAAAA+TGG - chr3_3:75096259-75096278 None:intergenic 25.0%
! GTATATTGAAACATTGAACA+AGG - chr3_3:75096438-75096457 None:intergenic 25.0%
! AAGCCTTAATATGCATAAAA+AGG + chr3_3:75097021-75097040 Msa0472680:CDS 25.0%
!! GTACCTTTTTATGCATATTA+AGG - chr3_3:75097027-75097046 None:intergenic 25.0%
!! TGAATAATTTTCAAAGGTGA+GGG - chr3_3:75097084-75097103 None:intergenic 25.0%
! ACTATTGAATAGTTTCCAAT+TGG + chr3_3:75097109-75097128 Msa0472680:CDS 25.0%
! CTATTGAATAGTTTCCAATT+GGG + chr3_3:75097110-75097129 Msa0472680:CDS 25.0%
! TATTGAATAGTTTCCAATTG+GGG + chr3_3:75097111-75097130 Msa0472680:CDS 25.0%
AGAAACTCAAACAAGCAATT+AGG + chr3_3:75091174-75091193 Msa0472680:CDS 30.0%
GAAACTCAAACAAGCAATTA+GGG + chr3_3:75091175-75091194 Msa0472680:CDS 30.0%
!! GGCTTTAGATTATTATACTC+AGG + chr3_3:75091466-75091485 Msa0472680:CDS 30.0%
TGAAATATAGGCATTACGAA+AGG + chr3_3:75091581-75091600 Msa0472680:intron 30.0%
TCAATTTCACCAACTTCAAA+AGG - chr3_3:75091609-75091628 None:intergenic 30.0%
AGTGATTATGAATGTGGTTA+AGG - chr3_3:75091711-75091730 None:intergenic 30.0%
CACACATACACATGAATAAA+TGG - chr3_3:75091772-75091791 None:intergenic 30.0%
TACTACTATATTTGTGCTCT+TGG - chr3_3:75092490-75092509 None:intergenic 30.0%
!! GTGTTTCACTTTTGAATTCT+GGG + chr3_3:75092668-75092687 Msa0472680:intron 30.0%
GATTGTGGACATATATCTTA+TGG - chr3_3:75092731-75092750 None:intergenic 30.0%
GCATGATTAAGAAATGATTG+TGG - chr3_3:75092746-75092765 None:intergenic 30.0%
!!! TGAAGTACATTTCTGGTTTT+TGG - chr3_3:75092768-75092787 None:intergenic 30.0%
CTAGAAGATGAATGAAACTA+AGG + chr3_3:75092975-75092994 Msa0472680:intron 30.0%
TAAGCCACATGTTTAAACAA+AGG - chr3_3:75093139-75093158 None:intergenic 30.0%
!! GACTTTTTGAAGGCTTTTTA+GGG - chr3_3:75093190-75093209 None:intergenic 30.0%
!! TGACTTTTTGAAGGCTTTTT+AGG - chr3_3:75093191-75093210 None:intergenic 30.0%
GGAATGAGAAGAATAAAGTA+AGG - chr3_3:75093233-75093252 None:intergenic 30.0%
TACTTTATTCTTCTCATTCC+TGG + chr3_3:75093233-75093252 Msa0472680:intron 30.0%
TTTGATGTGAATTAGTACTG+AGG - chr3_3:75093347-75093366 None:intergenic 30.0%
ACCATAGTATAGAATGCATA+CGG - chr3_3:75093526-75093545 None:intergenic 30.0%
CTTATTATCTCAAAAAGGAG+AGG - chr3_3:75093589-75093608 None:intergenic 30.0%
! TTGTTTCTTACCATAGCATA+TGG - chr3_3:75093742-75093761 None:intergenic 30.0%
! TTTTACAATCTCGCAAGTTT+AGG + chr3_3:75093847-75093866 Msa0472680:intron 30.0%
TTTACAATCTCGCAAGTTTA+GGG + chr3_3:75093848-75093867 Msa0472680:intron 30.0%
!!! TTCAGCATTTTTTTATTGCC+TGG + chr3_3:75093924-75093943 Msa0472680:intron 30.0%
ACTATTAAGTACAGTTCCAA+GGG - chr3_3:75093983-75094002 None:intergenic 30.0%
AACTATTAAGTACAGTTCCA+AGG - chr3_3:75093984-75094003 None:intergenic 30.0%
! CTACAAGAGTTTGCTTATAT+TGG + chr3_3:75094066-75094085 Msa0472680:intron 30.0%
AAGAACGTAATTATCTTCTG+TGG - chr3_3:75094362-75094381 None:intergenic 30.0%
AATGATTGTGAGCAAAAGAT+TGG + chr3_3:75094433-75094452 Msa0472680:CDS 30.0%
GAACATAAACATGAATGTCA+AGG + chr3_3:75094466-75094485 Msa0472680:CDS 30.0%
! TTTTTGTCAAAGAACTCATC+TGG + chr3_3:75094550-75094569 Msa0472680:CDS 30.0%
GTTATCTGATTATAGGTATC+TGG + chr3_3:75094645-75094664 Msa0472680:intron 30.0%
TGATATAGAGATTCCATTGA+TGG - chr3_3:75094810-75094829 None:intergenic 30.0%
!!! TTCCTTTGTTTTTTTGGGTA+TGG + chr3_3:75094853-75094872 Msa0472680:intron 30.0%
ATCCATACCCAAAAAAACAA+AGG - chr3_3:75094858-75094877 None:intergenic 30.0%
TGACAAAACAAGATGAAACT+TGG - chr3_3:75095033-75095052 None:intergenic 30.0%
!!! TCATCTTGTTTTGTCAATAC+AGG + chr3_3:75095037-75095056 Msa0472680:intron 30.0%
TTAAAATCAATAGACGCTCA+TGG + chr3_3:75095110-75095129 Msa0472680:CDS 30.0%
AAATGTACACTGGAATGAAA+TGG - chr3_3:75095161-75095180 None:intergenic 30.0%
TTTAACTAGTAATGTGGAAC+AGG + chr3_3:75095178-75095197 Msa0472680:CDS 30.0%
CTGCACATATACTTATCAAT+TGG + chr3_3:75095212-75095231 Msa0472680:intron 30.0%
AATTTAGACATTATTGGCGA+TGG + chr3_3:75095312-75095331 Msa0472680:intron 30.0%
!!! GCGATGGCAATTTTTTTTTT+GGG + chr3_3:75095328-75095347 Msa0472680:intron 30.0%
! CTAGGAGATATAATGGAATA+TGG - chr3_3:75095376-75095395 None:intergenic 30.0%
CATATTCCATTATATCTCCT+AGG + chr3_3:75095374-75095393 Msa0472680:intron 30.0%
GGCAAAGCTATTTATAAAGT+TGG + chr3_3:75095405-75095424 Msa0472680:CDS 30.0%
AATATGCATGAACATTTGGT+TGG - chr3_3:75095452-75095471 None:intergenic 30.0%
CTTTATCAGATCAAGCTTTA+GGG - chr3_3:75095675-75095694 None:intergenic 30.0%
TCTTTATCAGATCAAGCTTT+AGG - chr3_3:75095676-75095695 None:intergenic 30.0%
! ATTTCAACAGAAATTTTGCC+AGG - chr3_3:75095771-75095790 None:intergenic 30.0%
GTCAAGAAACCAATTTCAAA+AGG + chr3_3:75095869-75095888 Msa0472680:intron 30.0%
!!! CACTCTTAACCTTTTGAAAT+TGG - chr3_3:75095881-75095900 None:intergenic 30.0%
AAAGGTTAAGAGTGAAAAGA+AGG + chr3_3:75095887-75095906 Msa0472680:intron 30.0%
! AGTTTTCCTATGGCTAATAA+TGG + chr3_3:75095920-75095939 Msa0472680:intron 30.0%
! TTTCCTCTAATTTTATGTGG+GGG - chr3_3:75096158-75096177 None:intergenic 30.0%
! CTTTCCTCTAATTTTATGTG+GGG - chr3_3:75096159-75096178 None:intergenic 30.0%
! CCTTTCCTCTAATTTTATGT+GGG - chr3_3:75096160-75096179 None:intergenic 30.0%
! TCCTTTCCTCTAATTTTATG+TGG - chr3_3:75096161-75096180 None:intergenic 30.0%
AATGGTTATATGCCAAGATT+GGG - chr3_3:75096241-75096260 None:intergenic 30.0%
AAATGGTTATATGCCAAGAT+TGG - chr3_3:75096242-75096261 None:intergenic 30.0%
! CAACTTTTTGTTGAGCTTTT+AGG + chr3_3:75096276-75096295 Msa0472680:intron 30.0%
!! TTGAGCTTTTAGGAAGTTAT+AGG + chr3_3:75096286-75096305 Msa0472680:intron 30.0%
AATTGTATTTCCACGACATA+TGG + chr3_3:75096309-75096328 Msa0472680:intron 30.0%
TTATGTTGAGTGGAAATGAT+CGG - chr3_3:75096338-75096357 None:intergenic 30.0%
! TGATAAAGTAAGCTACTTTG+AGG + chr3_3:75096685-75096704 Msa0472680:intron 30.0%
! GATAAAGTAAGCTACTTTGA+GGG + chr3_3:75096686-75096705 Msa0472680:intron 30.0%
! ACATATGTTGCTTAGCATTT+AGG + chr3_3:75096792-75096811 Msa0472680:intron 30.0%
GGAGAAAATAGTTCAAACAT+AGG - chr3_3:75096841-75096860 None:intergenic 30.0%
! CTGAATAATTTTCAAAGGTG+AGG - chr3_3:75097085-75097104 None:intergenic 30.0%
ATTGAATAGTTTCCAATTGG+GGG + chr3_3:75097112-75097131 Msa0472680:CDS 30.0%
AAGAGAGGGAAAGAAAACAA+AGG + chr3_3:75091101-75091120 Msa0472680:five_prime_UTR 35.0%
! ATTGCTTGTTTGAGTTTCTC+TGG - chr3_3:75091173-75091192 None:intergenic 35.0%
GATTTAGTTGAAATGGGAGA+AGG - chr3_3:75091288-75091307 None:intergenic 35.0%
! CTCTAATGCTGATTATGTCA+AGG + chr3_3:75091445-75091464 Msa0472680:CDS 35.0%
! AAGATTCATTTTCTGCAGCA+GGG - chr3_3:75091799-75091818 None:intergenic 35.0%
! AAAGATTCATTTTCTGCAGC+AGG - chr3_3:75091800-75091819 None:intergenic 35.0%
GATATGTCCAAGCTATTCAA+AGG + chr3_3:75091857-75091876 Msa0472680:CDS 35.0%
AAACACACCTTTGAATAGCT+TGG - chr3_3:75091867-75091886 None:intergenic 35.0%
TCGACAGAAACTTGATCATT+CGG - chr3_3:75092194-75092213 None:intergenic 35.0%
GCATTGAAGTTTGATGTAGT+TGG + chr3_3:75092240-75092259 Msa0472680:intron 35.0%
AACTTCATTATTCTGGCATC+AGG + chr3_3:75092320-75092339 Msa0472680:intron 35.0%
AGGAAAGGCAAATATTGCAT+TGG + chr3_3:75092356-75092375 Msa0472680:CDS 35.0%
GGAAAGGCAAATATTGCATT+GGG + chr3_3:75092357-75092376 Msa0472680:CDS 35.0%
CTATATTTGTGCTCTTGGAT+TGG - chr3_3:75092485-75092504 None:intergenic 35.0%
!! AATTTGCTAGCTGCTTAACA+AGG - chr3_3:75092562-75092581 None:intergenic 35.0%
TTGTTAAGCAGCTAGCAAAT+TGG + chr3_3:75092561-75092580 Msa0472680:intron 35.0%
!! AAATTGGTTAAGGCTTGTTG+AGG + chr3_3:75092577-75092596 Msa0472680:intron 35.0%
!! CGTGTTTCACTTTTGAATTC+TGG + chr3_3:75092667-75092686 Msa0472680:intron 35.0%
TTGAATTCTGGGTGATTCTT+TGG + chr3_3:75092679-75092698 Msa0472680:intron 35.0%
TGAATTCTGGGTGATTCTTT+GGG + chr3_3:75092680-75092699 Msa0472680:intron 35.0%
CAAGGATTGAAGTACATTTC+TGG - chr3_3:75092775-75092794 None:intergenic 35.0%
!! AAAGGTATCCAAGACTGAAT+AGG - chr3_3:75092909-75092928 None:intergenic 35.0%
!! GCTTAATTTTGGGGAACTAA+AGG - chr3_3:75092927-75092946 None:intergenic 35.0%
AATTATGCACCTTATGGACT+AGG + chr3_3:75093053-75093072 Msa0472680:intron 35.0%
! ATTATGCACCTTATGGACTA+GGG + chr3_3:75093054-75093073 Msa0472680:intron 35.0%
ACATGTTTAAACAAAGGCAG+GGG - chr3_3:75093133-75093152 None:intergenic 35.0%
CACATGTTTAAACAAAGGCA+GGG - chr3_3:75093134-75093153 None:intergenic 35.0%
!! TTTTGAAGGCTTTTTAGGGA+TGG - chr3_3:75093186-75093205 None:intergenic 35.0%
! GTATGCAAGTGACTTTTTGA+AGG - chr3_3:75093200-75093219 None:intergenic 35.0%
TGCTAGAAAACTTCAATCAG+AGG + chr3_3:75093401-75093420 Msa0472680:intron 35.0%
TCCGTATGCATTCTATACTA+TGG + chr3_3:75093522-75093541 Msa0472680:intron 35.0%
!! ACACTTTGCAGCTTTATTTG+AGG - chr3_3:75093643-75093662 None:intergenic 35.0%
! GCTTCAATTGAAAGTACAAG+AGG + chr3_3:75093879-75093898 Msa0472680:intron 35.0%
TGGCGATTATGTAAGCAAAT+AGG + chr3_3:75094086-75094105 Msa0472680:intron 35.0%
ACAGTCTTCTTGAGATGAAT+GGG + chr3_3:75094150-75094169 Msa0472680:intron 35.0%
! GGTATTGAACACGATATACA+AGG - chr3_3:75094283-75094302 None:intergenic 35.0%
GCATATTCAGCAAGATTGTT+GGG - chr3_3:75094394-75094413 None:intergenic 35.0%
AGCATATTCAGCAAGATTGT+TGG - chr3_3:75094395-75094414 None:intergenic 35.0%
! TGGAGATATCACAAGTTTTG+TGG + chr3_3:75094570-75094589 Msa0472680:CDS 35.0%
!! CACAAGTTTTGTGGAAAAGT+TGG + chr3_3:75094579-75094598 Msa0472680:CDS 35.0%
! AGCTTTTATTCTTACTGTGC+AGG + chr3_3:75094676-75094695 Msa0472680:intron 35.0%
CAATGGAATCTCTATATCAC+AGG + chr3_3:75094811-75094830 Msa0472680:CDS 35.0%
! CTCTATATCACAGGTTGTTT+TGG + chr3_3:75094820-75094839 Msa0472680:intron 35.0%
!!! TCTTGTTTTGTCAATACAGG+TGG + chr3_3:75095040-75095059 Msa0472680:intron 35.0%
!!! GGCGATGGCAATTTTTTTTT+TGG + chr3_3:75095327-75095346 Msa0472680:intron 35.0%
!! GTCCACAGGTAACTTATTTT+TGG + chr3_3:75095544-75095563 Msa0472680:intron 35.0%
CTCCAAAAATAAGTTACCTG+TGG - chr3_3:75095549-75095568 None:intergenic 35.0%
GGTTCATATTCTTGACAACA+TGG + chr3_3:75095825-75095844 Msa0472680:intron 35.0%
! ATCATGAGTGAGTTTTCCTA+TGG + chr3_3:75095910-75095929 Msa0472680:intron 35.0%
TCAATGCCATTATTAGCCAT+AGG - chr3_3:75095929-75095948 None:intergenic 35.0%
TATGGCTAATAATGGCATTG+AGG + chr3_3:75095928-75095947 Msa0472680:intron 35.0%
! ATGGCTAATAATGGCATTGA+GGG + chr3_3:75095929-75095948 Msa0472680:intron 35.0%
!! AATCTTCTATTAGTGGGCTT+GGG - chr3_3:75096095-75096114 None:intergenic 35.0%
! GAAGACTACATTTTCTCTAC+GGG - chr3_3:75096136-75096155 None:intergenic 35.0%
! GGAAGACTACATTTTCTCTA+CGG - chr3_3:75096137-75096156 None:intergenic 35.0%
CCCACATAAAATTAGAGGAA+AGG + chr3_3:75096157-75096176 Msa0472680:intron 35.0%
! CAGATAAAGTTCTGTTTTGC+AGG + chr3_3:75096457-75096476 Msa0472680:intron 35.0%
! TAAAGTTCTGTTTTGCAGGT+TGG + chr3_3:75096461-75096480 Msa0472680:intron 35.0%
! AAAGTTCTGTTTTGCAGGTT+GGG + chr3_3:75096462-75096481 Msa0472680:intron 35.0%
GCATTTCATTGTCAATGTAC+TGG + chr3_3:75096530-75096549 Msa0472680:CDS 35.0%
!! TCACACAATGAAAAGCATTG+AGG - chr3_3:75096586-75096605 None:intergenic 35.0%
TTACTTTATCAGCAACAGCT+AGG - chr3_3:75096676-75096695 None:intergenic 35.0%
ATATGTAGAGTTGAGTGACT+TGG + chr3_3:75096754-75096773 Msa0472680:intron 35.0%
TTGCTTAGCATTTAGGAGTT+GGG + chr3_3:75096799-75096818 Msa0472680:intron 35.0%
!!! TATGAACAGAAGCGTCATTT+TGG - chr3_3:75096932-75096951 None:intergenic 35.0%
AAGGTACACACTGTTCAATT+TGG + chr3_3:75097040-75097059 Msa0472680:CDS 35.0%
TGAGGGAAAAGCTGTTATTA+GGG - chr3_3:75097067-75097086 None:intergenic 35.0%
GCAAAGGAAGAAGAAAGAGA+GGG + chr3_3:75091087-75091106 Msa0472680:five_prime_UTR 40.0%
GGGAAAGAAAACAAAGGAAG+TGG + chr3_3:75091107-75091126 Msa0472680:five_prime_UTR 40.0%
AAACAAAGGAAGTGGTGTAG+AGG + chr3_3:75091115-75091134 Msa0472680:five_prime_UTR 40.0%
TGGTGTAGAGGAAGAAGATA+TGG + chr3_3:75091127-75091146 Msa0472680:exon 40.0%
GAAGATATGGAGACTCTGAA+AGG + chr3_3:75091140-75091159 Msa0472680:exon 40.0%
TAGTACGTACCTGGTGAAAA+GGG - chr3_3:75091265-75091284 None:intergenic 40.0%
GCGTTGAAATATAAGCAGCT+TGG + chr3_3:75091410-75091429 Msa0472680:CDS 40.0%
! TTCTGTCGAGAGACAGATTT+TGG + chr3_3:75092205-75092224 Msa0472680:intron 40.0%
! TCTGTCGAGAGACAGATTTT+GGG + chr3_3:75092206-75092225 Msa0472680:intron 40.0%
!! AAGAGTGTCGAATCATCAAC+AGG + chr3_3:75092417-75092436 Msa0472680:CDS 40.0%
AGCAGCTAGCAAATTGGTTA+AGG + chr3_3:75092567-75092586 Msa0472680:intron 40.0%
GATGAGCCTATAGCAATAGT+AGG + chr3_3:75092826-75092845 Msa0472680:intron 40.0%
!!! GGTGTTTTGGCTGAATTTCT+TGG - chr3_3:75093015-75093034 None:intergenic 40.0%
!!! CTATAAGGAAGAGGGTGTTT+TGG - chr3_3:75093028-75093047 None:intergenic 40.0%
CATGTTTAAACAAAGGCAGG+GGG - chr3_3:75093132-75093151 None:intergenic 40.0%
CCACATGTTTAAACAAAGGC+AGG - chr3_3:75093135-75093154 None:intergenic 40.0%
! CCTGCCTTTGTTTAAACATG+TGG + chr3_3:75093132-75093151 Msa0472680:intron 40.0%
AGTCACTTGCATACATCAAG+AGG + chr3_3:75093206-75093225 Msa0472680:intron 40.0%
GTTTGCACACATTTCATTCC+AGG - chr3_3:75093254-75093273 None:intergenic 40.0%
GATTGTATGCTAGACGAGTT+AGG + chr3_3:75093280-75093299 Msa0472680:intron 40.0%
!! AGTTCTGAGAGAATGGAGAA+GGG - chr3_3:75093321-75093340 None:intergenic 40.0%
!! AAGTTCTGAGAGAATGGAGA+AGG - chr3_3:75093322-75093341 None:intergenic 40.0%
!! GAGGTAAAGTTCTGAGAGAA+TGG - chr3_3:75093328-75093347 None:intergenic 40.0%
CAAACAAAATGTGACCAACG+AGG - chr3_3:75093463-75093482 None:intergenic 40.0%
ATAGGATTGAATAGCGGTCA+GGG - chr3_3:75093486-75093505 None:intergenic 40.0%
AATAGGATTGAATAGCGGTC+AGG - chr3_3:75093487-75093506 None:intergenic 40.0%
TGCTGAAGAACCATATGCTA+TGG + chr3_3:75093729-75093748 Msa0472680:CDS 40.0%
! AGTTCTCTGGAAAGAAAACC+AGG - chr3_3:75093945-75093964 None:intergenic 40.0%
! TGGTTTTCTTTCCAGAGAAC+TGG + chr3_3:75093944-75093963 Msa0472680:intron 40.0%
ATTAAGTACAGTTCCAAGGG+AGG - chr3_3:75093980-75093999 None:intergenic 40.0%
CATTCATCTCAAGAAGACTG+TGG - chr3_3:75094151-75094170 None:intergenic 40.0%
CACAGTCTTCTTGAGATGAA+TGG + chr3_3:75094149-75094168 Msa0472680:intron 40.0%
GTAGGTCGTTCAAGCAATAA+TGG - chr3_3:75094246-75094265 None:intergenic 40.0%
ATACAAGGAACTCTATCAGC+AGG - chr3_3:75094268-75094287 None:intergenic 40.0%
AATGCCAAATAAAGGCAGGT+GGG + chr3_3:75094320-75094339 Msa0472680:CDS 40.0%
! ATGAATGTCAAGGAGTGCAT+TGG + chr3_3:75094476-75094495 Msa0472680:CDS 40.0%
! ACTGCCTTCTGACATAGTTT+TGG + chr3_3:75094507-75094526 Msa0472680:CDS 40.0%
CTGCTACACAAGGTTTATGA+TGG - chr3_3:75094924-75094943 None:intergenic 40.0%
AATATGGCTCAGAATCACGA+AGG - chr3_3:75095360-75095379 None:intergenic 40.0%
CTCTGACCTAGGAGATATAA+TGG - chr3_3:75095383-75095402 None:intergenic 40.0%
TTATATCTCCTAGGTCAGAG+TGG + chr3_3:75095383-75095402 Msa0472680:intron 40.0%
TATATCTCCTAGGTCAGAGT+GGG + chr3_3:75095384-75095403 Msa0472680:intron 40.0%
GAACATTTGGTTGGCAAGAA+TGG - chr3_3:75095443-75095462 None:intergenic 40.0%
TGTCAGCTGGAATTGTCTTA+CGG + chr3_3:75095522-75095541 Msa0472680:CDS 40.0%
! CTTTAGGGATGCTTGATTAC+TGG - chr3_3:75095660-75095679 None:intergenic 40.0%
GCCTATATAAAAGAGTGACC+TGG + chr3_3:75095750-75095769 Msa0472680:intron 40.0%
! GCCAGGTCACTCTTTTATAT+AGG - chr3_3:75095754-75095773 None:intergenic 40.0%
TCTTGACAACATGGCTGAAA+AGG + chr3_3:75095834-75095853 Msa0472680:intron 40.0%
! TGGCTAATAATGGCATTGAG+GGG + chr3_3:75095930-75095949 Msa0472680:intron 40.0%
!!! AGGGGTATTTTTGCTACGAT+AGG + chr3_3:75095948-75095967 Msa0472680:intron 40.0%
CTTATACCAAGAGTTAGGTC+AGG + chr3_3:75096045-75096064 Msa0472680:intron 40.0%
ACAATACCTGACCTAACTCT+TGG - chr3_3:75096054-75096073 None:intergenic 40.0%
!! CAATCTTCTATTAGTGGGCT+TGG - chr3_3:75096096-75096115 None:intergenic 40.0%
CGCAGCAATCTTCTATTAGT+GGG - chr3_3:75096101-75096120 None:intergenic 40.0%
TCGCAGCAATCTTCTATTAG+TGG - chr3_3:75096102-75096121 None:intergenic 40.0%
CTTCCCCCACATAAAATTAG+AGG + chr3_3:75096152-75096171 Msa0472680:intron 40.0%
TGTGTGAACCCAAATTGTTC+TGG + chr3_3:75096599-75096618 Msa0472680:CDS 40.0%
GTTGCTTAGCATTTAGGAGT+TGG + chr3_3:75096798-75096817 Msa0472680:intron 40.0%
TGCATTTCAAACAGACTCCA+GGG - chr3_3:75096959-75096978 None:intergenic 40.0%
GTGAGGGAAAAGCTGTTATT+AGG - chr3_3:75097068-75097087 None:intergenic 40.0%
GGCAAAGGAAGAAGAAAGAG+AGG + chr3_3:75091086-75091105 Msa0472680:five_prime_UTR 45.0%
! TCATTTCGACCCTTTTCACC+AGG + chr3_3:75091253-75091272 Msa0472680:CDS 45.0%
GTAGTACGTACCTGGTGAAA+AGG - chr3_3:75091266-75091285 None:intergenic 45.0%
!!! CGAAAGGCTCCTTTTGAAGT+TGG + chr3_3:75091597-75091616 Msa0472680:CDS 45.0%
TTCTTTGCCTAATTGCCACG+TGG + chr3_3:75092091-75092110 Msa0472680:intron 45.0%
TCTTTGCCTAATTGCCACGT+GGG + chr3_3:75092092-75092111 Msa0472680:intron 45.0%
AACTTTCCCACGTGGCAATT+AGG - chr3_3:75092101-75092120 None:intergenic 45.0%
TGCCACGTGGGAAAGTTTAT+TGG + chr3_3:75092104-75092123 Msa0472680:intron 45.0%
GCCACGTGGGAAAGTTTATT+GGG + chr3_3:75092105-75092124 Msa0472680:intron 45.0%
CCACGTGGGAAAGTTTATTG+GGG + chr3_3:75092106-75092125 Msa0472680:intron 45.0%
! CTGTCGAGAGACAGATTTTG+GGG + chr3_3:75092207-75092226 Msa0472680:intron 45.0%
CATTATTCTGGCATCAGGCA+TGG + chr3_3:75092325-75092344 Msa0472680:intron 45.0%
! AGTGTCGAATCATCAACAGG+AGG + chr3_3:75092420-75092439 Msa0472680:CDS 45.0%
GTGTCGAATCATCAACAGGA+GGG + chr3_3:75092421-75092440 Msa0472680:CDS 45.0%
GGAGAACAGCTTGAGTACTA+CGG + chr3_3:75092524-75092543 Msa0472680:CDS 45.0%
GAGAACAGCTTGAGTACTAC+GGG + chr3_3:75092525-75092544 Msa0472680:CDS 45.0%
GTAGGTAAATAGGGTTTCCG+AGG + chr3_3:75092844-75092863 Msa0472680:intron 45.0%
!! TTATGTCGGCTTAGAGCTTG+AGG + chr3_3:75092881-75092900 Msa0472680:intron 45.0%
! TTGAGGTGCCTATTCAGTCT+TGG + chr3_3:75092898-75092917 Msa0472680:intron 45.0%
GTTGTTCTCCCTAGTCCATA+AGG - chr3_3:75093065-75093084 None:intergenic 45.0%
! GGGAGAACAACTCACTGTTT+TGG + chr3_3:75093074-75093093 Msa0472680:intron 45.0%
AGAAACAATCGTTGCCTCGT+TGG + chr3_3:75093446-75093465 Msa0472680:intron 45.0%
AAGATGGTACAGTGCGTTTG+TGG + chr3_3:75093606-75093625 Msa0472680:intron 45.0%
AGTGTCTCCGTACCTGATAA+AGG + chr3_3:75093658-75093677 Msa0472680:CDS 45.0%
TCCGTACCTGATAAAGGAAG+AGG + chr3_3:75093664-75093683 Msa0472680:CDS 45.0%
GCCTCTTCCTTTATCAGGTA+CGG - chr3_3:75093668-75093687 None:intergenic 45.0%
ACCTGATAAAGGAAGAGGCA+TGG + chr3_3:75093669-75093688 Msa0472680:CDS 45.0%
ACCATGCCTCTTCCTTTATC+AGG - chr3_3:75093673-75093692 None:intergenic 45.0%
GAACCTGGTGAAACATCAGA+TGG - chr3_3:75093700-75093719 None:intergenic 45.0%
TGATGTTTCACCAGGTTCGT+TGG + chr3_3:75093702-75093721 Msa0472680:CDS 45.0%
AAGGAACTCTATCAGCAGGT+AGG - chr3_3:75094264-75094283 None:intergenic 45.0%
CTCGCACCAATGCCAAATAA+AGG + chr3_3:75094312-75094331 Msa0472680:CDS 45.0%
CACCAATGCCAAATAAAGGC+AGG + chr3_3:75094316-75094335 Msa0472680:CDS 45.0%
! CACCTGCCTTTATTTGGCAT+TGG - chr3_3:75094321-75094340 None:intergenic 45.0%
CAATGCCAAATAAAGGCAGG+TGG + chr3_3:75094319-75094338 Msa0472680:CDS 45.0%
TTTGCCCACCTGCCTTTATT+TGG - chr3_3:75094327-75094346 None:intergenic 45.0%
CCAGCCAAAACTATGTCAGA+AGG - chr3_3:75094514-75094533 None:intergenic 45.0%
!!! CCTTCTGACATAGTTTTGGC+TGG + chr3_3:75094511-75094530 Msa0472680:CDS 45.0%
! TTAGCACATTTGGGGTTGCA+TGG + chr3_3:75095804-75095823 Msa0472680:intron 45.0%
TGCTACGATAGGCAAACATG+AGG + chr3_3:75095959-75095978 Msa0472680:intron 45.0%
!! GAGTAGCATTGACCCAATCT+TGG + chr3_3:75096226-75096245 Msa0472680:intron 45.0%
TGATCGGAAACCATATGTCG+TGG - chr3_3:75096322-75096341 None:intergenic 45.0%
!! TGTTTTGCAGGTTGGGTTGT+GGG + chr3_3:75096469-75096488 Msa0472680:intron 45.0%
ACACTGCGCCAGAACAATTT+GGG - chr3_3:75096610-75096629 None:intergenic 45.0%
AACACTGCGCCAGAACAATT+TGG - chr3_3:75096611-75096630 None:intergenic 45.0%
AAATTGTTCTGGCGCAGTGT+TGG + chr3_3:75096610-75096629 Msa0472680:CDS 45.0%
GAGTTGGGAGCTTGGATATA+TGG + chr3_3:75096814-75096833 Msa0472680:intron 45.0%
GCTTCTGTTCATATTCACCC+TGG + chr3_3:75096939-75096958 Msa0472680:CDS 45.0%
CTGCATTTCAAACAGACTCC+AGG - chr3_3:75096960-75096979 None:intergenic 45.0%
ATGCAGTTCTTACCGTGATC+TGG + chr3_3:75096974-75096993 Msa0472680:CDS 45.0%
TTATCTAGCTAGCCCCCAAT+TGG - chr3_3:75097127-75097146 None:intergenic 45.0%
CCCCAATAAACTTTCCCACG+TGG - chr3_3:75092109-75092128 None:intergenic 50.0%
TCTGGCATCAGGCATGGTAT+AGG + chr3_3:75092331-75092350 Msa0472680:intron 50.0%
CATCAGGCATGGTATAGGAG+AGG + chr3_3:75092336-75092355 Msa0472680:intron 50.0%
GGCATGGTATAGGAGAGGAA+AGG + chr3_3:75092341-75092360 Msa0472680:intron 50.0%
AAGCTGTTCTCCTTCTGTCG+CGG - chr3_3:75092516-75092535 None:intergenic 50.0%
CCTGGTGAAACATCAGATGG+CGG - chr3_3:75093697-75093716 None:intergenic 50.0%
TCAGCATGAACCAACGAACC+TGG - chr3_3:75093715-75093734 None:intergenic 50.0%
CATTGGTGCGAGCAGTACAA+TGG - chr3_3:75094304-75094323 None:intergenic 50.0%
ATGTCAGAAGGCAGTACAGC+AGG - chr3_3:75094502-75094521 None:intergenic 50.0%
GGAGCTATGCTTGCCATCAA+TGG + chr3_3:75094794-75094813 Msa0472680:CDS 50.0%
! CATGGACTGTCAGATCAGTC+TGG + chr3_3:75095128-75095147 Msa0472680:CDS 50.0%
GGAATTGTCTTACGGTCCAC+AGG + chr3_3:75095530-75095549 Msa0472680:CDS 50.0%
!! CTGTTTTGCAGGTTGGGTTG+TGG + chr3_3:75096468-75096487 Msa0472680:intron 50.0%
GCATTTAGGAGTTGGGAGCT+TGG + chr3_3:75096806-75096825 Msa0472680:intron 50.0%
CACGTGAAGACTCCAGATCA+CGG - chr3_3:75096989-75097008 None:intergenic 50.0%
GGGAGAAGGTAGTACGTACC+TGG - chr3_3:75091274-75091293 None:intergenic 55.0%
GACCCTAGCTATGCTCTGTG+CGG + chr3_3:75091371-75091390 Msa0472680:CDS 55.0%
ACCCTAGCTATGCTCTGTGC+GGG + chr3_3:75091372-75091391 Msa0472680:CDS 55.0%
TCCCGCACAGAGCATAGCTA+GGG - chr3_3:75091376-75091395 None:intergenic 55.0%
TTCCCGCACAGAGCATAGCT+AGG - chr3_3:75091377-75091396 None:intergenic 55.0%
AGTAGTACAGCCGCGACAGA+AGG + chr3_3:75092503-75092522 Msa0472680:CDS 55.0%
AAAGGCAGGGGGCTTTCAAG+GGG - chr3_3:75093121-75093140 None:intergenic 55.0%
CAAAGGCAGGGGGCTTTCAA+GGG - chr3_3:75093122-75093141 None:intergenic 55.0%
ACAAAGGCAGGGGGCTTTCA+AGG - chr3_3:75093123-75093142 None:intergenic 55.0%
TGGTACAGTGCGTTTGTGGC+AGG + chr3_3:75093610-75093629 Msa0472680:intron 55.0%
CCGCCATCTGATGTTTCACC+AGG + chr3_3:75093694-75093713 Msa0472680:CDS 55.0%
GTCAGGAGTCTCCAGTTCTC+TGG - chr3_3:75093958-75093977 None:intergenic 55.0%
GTACAGTTCCAAGGGAGGTC+AGG - chr3_3:75093975-75093994 None:intergenic 55.0%
GGACTGTCAGATCAGTCTGG+AGG + chr3_3:75095131-75095150 Msa0472680:CDS 55.0%
AGCTTTGCCCACTCTGACCT+AGG - chr3_3:75095394-75095413 None:intergenic 55.0%
ACAACACAAGCCGTAGCAGC+TGG + chr3_3:75095498-75095517 Msa0472680:CDS 55.0%
CAACACAAGCCGTAGCAGCT+GGG + chr3_3:75095499-75095518 Msa0472680:CDS 55.0%
GCACAAAGCGCATCTGTGCA+AGG - chr3_3:75095725-75095744 None:intergenic 55.0%
TGGAGACTCCTGACCTCCCT+TGG + chr3_3:75093964-75093983 Msa0472680:intron 60.0%
CAGCTGACACCCAGCTGCTA+CGG - chr3_3:75095511-75095530 None:intergenic 60.0%
CGTAGCAGCTGGGTGTCAGC+TGG + chr3_3:75095509-75095528 Msa0472680:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75091076 75097150 75091076 ID=Msa0472680;Name=Msa0472680
chr3_3 mRNA 75091076 75097150 75091076 ID=Msa0472680-mRNA-1;Parent=Msa0472680;Name=Msa0472680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=70|1|1|1|1|1|12|8|679
chr3_3 exon 75091076 75091274 75091076 ID=Msa0472680-mRNA-1:exon:19366;Parent=Msa0472680-mRNA-1
chr3_3 exon 75091353 75091487 75091353 ID=Msa0472680-mRNA-1:exon:19367;Parent=Msa0472680-mRNA-1
chr3_3 exon 75091591 75091677 75091591 ID=Msa0472680-mRNA-1:exon:19368;Parent=Msa0472680-mRNA-1
chr3_3 exon 75091807 75091878 75091807 ID=Msa0472680-mRNA-1:exon:19369;Parent=Msa0472680-mRNA-1
chr3_3 exon 75092342 75092546 75092342 ID=Msa0472680-mRNA-1:exon:19370;Parent=Msa0472680-mRNA-1
chr3_3 exon 75093632 75093750 75093632 ID=Msa0472680-mRNA-1:exon:19371;Parent=Msa0472680-mRNA-1
chr3_3 exon 75094211 75094600 75094211 ID=Msa0472680-mRNA-1:exon:19372;Parent=Msa0472680-mRNA-1
chr3_3 exon 75094698 75094832 75094698 ID=Msa0472680-mRNA-1:exon:19373;Parent=Msa0472680-mRNA-1
chr3_3 exon 75095059 75095199 75095059 ID=Msa0472680-mRNA-1:exon:19374;Parent=Msa0472680-mRNA-1
chr3_3 exon 75095396 75095551 75095396 ID=Msa0472680-mRNA-1:exon:19375;Parent=Msa0472680-mRNA-1
chr3_3 exon 75096479 75096691 75096479 ID=Msa0472680-mRNA-1:exon:19376;Parent=Msa0472680-mRNA-1
chr3_3 exon 75096885 75097150 75096885 ID=Msa0472680-mRNA-1:exon:19377;Parent=Msa0472680-mRNA-1
chr3_3 five_prime_UTR 75091076 75091145 75091076 ID=Msa0472680-mRNA-1:five_prime_utr;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75091146 75091274 75091146 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75091353 75091487 75091353 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75091591 75091677 75091591 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75091807 75091878 75091807 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75092342 75092546 75092342 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75093632 75093750 75093632 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75094211 75094600 75094211 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75094698 75094832 75094698 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75095059 75095199 75095059 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75095396 75095551 75095396 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75096479 75096691 75096479 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 CDS 75096885 75097142 75096885 ID=Msa0472680-mRNA-1:cds;Parent=Msa0472680-mRNA-1
chr3_3 three_prime_UTR 75097143 75097150 75097143 ID=Msa0472680-mRNA-1:three_prime_utr;Parent=Msa0472680-mRNA-1
Gene Sequence

>Msa0472680

ATGGAGACTCTGAAAGGTGCGATTCCAGAGAAACTCAAACAAGCAATTAGGGATAGCACTGTAAACACTCTTAGCGACACATGTTCTTCTCTTCATAACTTCTTTCTTCATTTCGACCCTTTTCACCAGACTATGACTCAACTTGCAGACCCTAGCTATGCTCTGTGCGGGAAAAGCAAAGAAGCTGCGTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCTAATGCTGATTATGTCAAGGCTTTAGATTATTATACTCAGGCATTACGAAAGGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATCTCATTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTCAGTAGAATGTTTGCGCGACTGTGATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTGGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAAATATAGTAGTACAGCCGCGACAGAAGGAGAACAGCTTGAGTACTACGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCCGCCATCTGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCATATGCTATGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTACTGCTCGCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACGTTCTTAAAAACTTACCCAACAATCTTGCTGAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTGCATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATTTGTACGCCATTGTATTGTTATATTGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATCACAGGTGGTCATAGTTATTTCCCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTGTCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGTTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCGCGCACACTCTATTTACGAACAACACAAGCCGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTACGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATCAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCAATTTAACCAAAATGACGCTTCTGTTCATATTCACCCTGGAGTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGTACACACTGTTCAATTTGGACCCTAATAACAGCTTTTCCCTCACCTTTGAAAATTATTCAGAACTACTATTGAATAGTTTCCAATTGGGGGCTAGCTAG

Protein sequence

>Msa0472680

METLKGAIPEKLKQAIRDSTVNTLSDTCSSLHNFFLHFDPFHQTMTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYVKALDYYTQALRKAPFEVGEIENNLIATLYINRATVLHKMNLSVECLRDCDRALQICPSYSKAWYRRGKANIALGNNRDAICDLNIAKSVESSTGGKRQIECELKIILDQSKSTNIVVQPRQKENSLSTTGEMPQIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYVLKNLPNNLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHLYAIVLLYCLKHSYGAMLAINGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLQFNQNDASVHIHPGVCLKCSSYRDLESSRATVDKALICIKRYTLFNLDPNNSFSLTFENYSELLLNSFQLGAS*