AlfalfaGEDB | Msa1170730

M. sativa cultivar zhongmu-4 / Msa1170730

KEGG: -
GO: -
PFAM: PF00515.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170730	XP_024635313.1	97.044	778	22	1	1	777	1	778	0.0	1559

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170730	sp\|Q8BTK5\|SMYD4_MOUSE	26.619	278	159	4	461	735	510	745	8.17e-18	92.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170730	G7J9Q5	97.044	778	22	1	1	777	1	778	0.0	1559

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TFs/TRs:

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Gene ID	Type	Classification
Msa1170730	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1170730	-0.803986	2.682826e-49	-8.615850e-47
Msa0004880	Msa1170730	0.806638	7.463987e-50	-8.615850e-47
Msa0007080	Msa1170730	0.804784	1.829745e-49	-8.615850e-47
Msa0011720	Msa1170730	0.803068	4.158033e-49	-8.615850e-47
Msa0017510	Msa1170730	0.827800	1.280523e-54	-8.615850e-47
Msa0028640	Msa1170730	0.820738	5.853151e-53	-8.615850e-47
Msa0048000	Msa1170730	0.830127	3.498921e-55	-8.615850e-47
Msa0051770	Msa1170730	0.809096	2.240317e-50	-8.615850e-47
Msa0051790	Msa1170730	0.804570	2.027749e-49	-8.615850e-47
Msa0068680	Msa1170730	0.818279	2.129736e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1170730	MtrunA17_Chr3g0128421	97.044	778	22	1	1	777	1	778	0.0	1559
Msa1170730	MtrunA17_Chr3g0115061	22.430	321	188	10	459	766	182	454	2.43e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1170730	AT1G33400.1	44.949	792	416	7	1	776	1	788	684
Msa1170730	AT1G33400.2	44.800	750	394	7	43	776	55	800	662
Msa1170730	AT1G33400.3	44.320	625	328	7	168	776	2	622	538

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Find 158 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGGAAGTGGTGTAG+AGG	0.527368	7_4:+64145965	Msa1170730:five_prime_UTR
AAACACACCTTTGAATAGCT+TGG	0.472303	7_4:-64146714	None:intergenic
AAATGTACACTGGAATGAAA+TGG	0.446196	7_4:-64150009	None:intergenic
AAATTGTTCTGGCGCAGTGT+TGG	0.499251	7_4:+64151462	Msa1170730:CDS
AAATTTGCATGCATACAATA+AGG	0.339149	7_4:+64152175	Msa1170730:CDS
AACACTGCGCCAGAACAATT+TGG	0.217761	7_4:-64151460	None:intergenic
AAGAAACACTGACTGCTGAG+CGG	0.726873	7_4:-64154050	None:intergenic
AAGAACGTAATTATCTTCTG+TGG	0.542033	7_4:-64149210	None:intergenic
AAGACAATATAACAATACAA+TGG	0.671651	7_4:-64149610	None:intergenic
AAGAGAGGGAAAGAAAACAA+AGG	0.526427	7_4:+64145951	Msa1170730:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACTCAAACAAGCAATT+AGG	+	chr7_4:64146024-64146043	Msa1170730:CDS	30.0%
GAAACTCAAACAAGCAATTA+GGG	+	chr7_4:64146025-64146044	Msa1170730:CDS	30.0%
TGAAATATAGGCATTACGAA+AGG	+	chr7_4:64146431-64146450	Msa1170730:intron	30.0%
TCAATTTCACCAACTTCAAA+AGG	-	chr7_4:64146459-64146478	None:intergenic	30.0%
AGTGATTATGAATGTGGTTA+AGG	-	chr7_4:64146561-64146580	None:intergenic	30.0%
CACACATACACATGAATAAA+TGG	-	chr7_4:64146622-64146641	None:intergenic	30.0%
TACTACTATATTTGTGCTCT+TGG	-	chr7_4:64147340-64147359	None:intergenic	30.0%
GATTGTGGACATATATCTTA+TGG	-	chr7_4:64147581-64147600	None:intergenic	30.0%
GCATGATTAAGAAATGATTG+TGG	-	chr7_4:64147596-64147615	None:intergenic	30.0%
CTAGAAGATGAATGAAACTA+AGG	+	chr7_4:64147825-64147844	Msa1170730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	64145926	64154391	64145926	ID=Msa1170730;Name=Msa1170730
chr7_4	mRNA	64145926	64154391	64145926	ID=Msa1170730-mRNA-1;Parent=Msa1170730;Name=Msa1170730-mRNA-1;_AED=0.12;_eAED=0.12;_QI=70\|1\|1\|1\|0.93\|0.87\|16\|393\|777
chr7_4	exon	64145926	64146124	64145926	ID=Msa1170730-mRNA-1:exon:20558;Parent=Msa1170730-mRNA-1
chr7_4	exon	64146203	64146337	64146203	ID=Msa1170730-mRNA-1:exon:20559;Parent=Msa1170730-mRNA-1
chr7_4	exon	64146441	64146527	64146441	ID=Msa1170730-mRNA-1:exon:20560;Parent=Msa1170730-mRNA-1
chr7_4	exon	64146657	64146728	64146657	ID=Msa1170730-mRNA-1:exon:20561;Parent=Msa1170730-mRNA-1
chr7_4	exon	64147192	64147396	64147192	ID=Msa1170730-mRNA-1:exon:20562;Parent=Msa1170730-mRNA-1
chr7_4	exon	64148482	64148600	64148482	ID=Msa1170730-mRNA-1:exon:20563;Parent=Msa1170730-mRNA-1
chr7_4	exon	64149062	64149451	64149062	ID=Msa1170730-mRNA-1:exon:20564;Parent=Msa1170730-mRNA-1
chr7_4	exon	64149549	64149683	64149549	ID=Msa1170730-mRNA-1:exon:20565;Parent=Msa1170730-mRNA-1
chr7_4	exon	64149910	64150050	64149910	ID=Msa1170730-mRNA-1:exon:20566;Parent=Msa1170730-mRNA-1
chr7_4	exon	64150247	64150402	64150247	ID=Msa1170730-mRNA-1:exon:20567;Parent=Msa1170730-mRNA-1
chr7_4	exon	64151331	64151543	64151331	ID=Msa1170730-mRNA-1:exon:20568;Parent=Msa1170730-mRNA-1
chr7_4	exon	64151737	64151894	64151737	ID=Msa1170730-mRNA-1:exon:20569;Parent=Msa1170730-mRNA-1
chr7_4	exon	64152094	64152208	64152094	ID=Msa1170730-mRNA-1:exon:20570;Parent=Msa1170730-mRNA-1
chr7_4	exon	64152781	64152861	64152781	ID=Msa1170730-mRNA-1:exon:20571;Parent=Msa1170730-mRNA-1
chr7_4	exon	64153695	64154059	64153695	ID=Msa1170730-mRNA-1:exon:20572;Parent=Msa1170730-mRNA-1
chr7_4	exon	64154166	64154391	64154166	ID=Msa1170730-mRNA-1:exon:20573;Parent=Msa1170730-mRNA-1
chr7_4	five_prime_UTR	64145926	64145995	64145926	ID=Msa1170730-mRNA-1:five_prime_utr;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64145996	64146124	64145996	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64146203	64146337	64146203	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64146441	64146527	64146441	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64146657	64146728	64146657	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64147192	64147396	64147192	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64148482	64148600	64148482	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64149062	64149451	64149062	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64149549	64149683	64149549	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64149910	64150050	64149910	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64150247	64150402	64150247	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64151331	64151543	64151331	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64151737	64151894	64151737	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64152094	64152208	64152094	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64152781	64152861	64152781	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	CDS	64153695	64153892	64153695	ID=Msa1170730-mRNA-1:cds;Parent=Msa1170730-mRNA-1
chr7_4	three_prime_UTR	64153893	64154059	64153893	ID=Msa1170730-mRNA-1:three_prime_utr;Parent=Msa1170730-mRNA-1
chr7_4	three_prime_UTR	64154166	64154391	64154166	ID=Msa1170730-mRNA-1:three_prime_utr;Parent=Msa1170730-mRNA-1

Gene Sequence

>Msa1170730

ATGGAGACTCTGAAAGGTGCGATTCCAGAGAAACTCAAACAAGCAATTAGGGATAGCACTGTAAACACTCTTAGCGACACATGTTCTTCTCTTCATAACTTCTTTCTTCATTTCGACCCTTTTCACCAGACTATGACTCAACTTGCAGACCCTAGCTATGCTCTGTGCGGGAAAAGCAAAGAAGCTGCGTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCTAATGCTGATTATGTCAAGGCTTTAGATTATTATACTCAGGCATTACGAAAGGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATCTCATTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTCAGTAGAATGTTTGCGCGACTGTGATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTGGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAAATATAGTAGTACAGCCGCGACAGAAGGAGAACAGCTTGAGTACTACGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCCGCCATCTGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCATATGCTATGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTACTGCTCGCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACGTTCTTAAAAACTTACCCAACAATCTTGCTGAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTGCATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATTTGTACGCCATTGTATTGTTATATTGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATCACAGGTGGTCATAGTTATTTCCCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTGTCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGTTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCGCGCACACTCTATTTACGAACAACACAAGCCGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTACGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATCAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCAATTTAACCAAAATGACGCTTCTGTTCATATTCACCCTGGAGTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCAGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTACAATTATCGGCGGATCATTGTAAAGCATCCATTCAGATTTTGGAGAAGATATATGATCCTGATGATATAGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTACTTGGGTGACAATAGTGCTGTCAACAGCATTGGTCGAATAGGTGCTATTTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTATCTTCAGTACCTTAGGAGAGAAATTTAG

Protein sequence

>Msa1170730

METLKGAIPEKLKQAIRDSTVNTLSDTCSSLHNFFLHFDPFHQTMTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYVKALDYYTQALRKAPFEVGEIENNLIATLYINRATVLHKMNLSVECLRDCDRALQICPSYSKAWYRRGKANIALGNNRDAICDLNIAKSVESSTGGKRQIECELKIILDQSKSTNIVVQPRQKENSLSTTGEMPQIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYVLKNLPNNLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHLYAIVLLYCLKHSYGAMLAINGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLQFNQNDASVHIHPGVCLKCSSYRDLESSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKIYDPDDIVIAYELVKLSSVQLYLGDNSAVNSIGRIGAIFSRYYGLHADLVFPYLQYLRREI*