AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473080 MtrunA17_Chr3g0128421 97.044 778 22 1 1 777 1 778 0.0 1559
Msa0473080 MtrunA17_Chr3g0115061 22.430 321 188 10 459 766 182 454 2.43e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473080 AT1G33400.1 44.949 792 416 7 1 776 1 788 0.0 684
Msa0473080 AT1G33400.2 44.800 750 394 7 43 776 55 800 0.0 662
Msa0473080 AT1G33400.3 44.320 625 328 7 168 776 2 622 0.0 538

Find 158 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCATTTGAAAGTAAAT+TGG 0.199937 3_3:-75549841 Msa0473080:CDS
AACACTGCGCCAGAACAATT+TGG 0.217761 3_3:+75547953 None:intergenic
TTTGCCCACCTGCCTTTATT+TGG 0.225137 3_3:+75550238 None:intergenic
AGAAACTCAAACAAGCAATT+AGG 0.229319 3_3:-75553387 Msa0473080:CDS
TATTGTCTTAAACATTCTTA+TGG 0.241604 3_3:-75549789 Msa0473080:CDS
TTGTTGTCGATGTAGTTAAA+TGG 0.243220 3_3:-75545262 Msa0473080:intron
ATAACGTAGTCTCGTGAATA+TGG 0.244246 3_3:-75545053 Msa0473080:three_prime_UTR
TACTACTATATTTGTGCTCT+TGG 0.267628 3_3:+75552076 None:intergenic
TATGAACAGAAGCGTCATTT+TGG 0.281117 3_3:+75547632 None:intergenic
TCATACAATTCACTTTAATC+TGG 0.303169 3_3:+75549486 None:intergenic
AAGCCTTAATATGCATAAAA+AGG 0.306459 3_3:-75547540 Msa0473080:intron
CACTTTATAGCCCACTTTGC+TGG 0.311906 3_3:+75545485 None:intergenic
AGAAAATATGCATGAACATT+TGG 0.324630 3_3:+75549109 None:intergenic
ACTGCCTTCTGACATAGTTT+TGG 0.338485 3_3:-75550055 Msa0473080:CDS
AAATTTGCATGCATACAATA+AGG 0.339149 3_3:-75547238 Msa0473080:CDS
TTCATCCGTCCAACTTTACT+TGG 0.341657 3_3:-75545659 Msa0473080:CDS
AGTGGGAGAATTACAATTAT+CGG 0.343600 3_3:-75546600 Msa0473080:CDS
ACCATGCCTCTTCCTTTATC+AGG 0.346989 3_3:+75550893 None:intergenic
GAAACTCAAACAAGCAATTA+GGG 0.353034 3_3:-75553386 Msa0473080:CDS
AGCTTAAATGACAGGTCATT+TGG 0.360209 3_3:-75545442 Msa0473080:three_prime_UTR
ATTGCTTGTTTGAGTTTCTC+TGG 0.360886 3_3:+75553391 None:intergenic
CACCTGCCTTTATTTGGCAT+TGG 0.370556 3_3:+75550244 None:intergenic
TTGCTGGAAAAGCATTTGAT+TGG 0.382988 3_3:+75545501 None:intergenic
TGTTGTCGATGTAGTTAAAT+GGG 0.396158 3_3:-75545261 Msa0473080:intron
CTATATTTGTGCTCTTGGAT+TGG 0.397564 3_3:+75552081 None:intergenic
ACACTGCGCCAGAACAATTT+GGG 0.399716 3_3:+75547954 None:intergenic
GGCAAAGGAAGAAGAAAGAG+AGG 0.401323 3_3:-75553473 Msa0473080:five_prime_UTR
TTCCTTATCTTCAGTACCTT+AGG 0.401357 3_3:-75545555 Msa0473080:CDS
TGATATAGAGATTCCATTGA+TGG 0.401639 3_3:+75549755 None:intergenic
GGAGCTATGCTTGCCATCAA+TGG 0.404119 3_3:-75549768 Msa0473080:CDS
CTCGCACCAATGCCAAATAA+AGG 0.406668 3_3:-75550250 Msa0473080:CDS
GGCAAAGCTATTTATAAAGT+TGG 0.408738 3_3:-75549157 Msa0473080:CDS
TTGTTTCTTACCATAGCATA+TGG 0.409749 3_3:+75550824 None:intergenic
AGCATATTCAGCAAGATTGT+TGG 0.410224 3_3:+75550170 None:intergenic
TCAATTTCACCAACTTCAAA+AGG 0.415930 3_3:+75552957 None:intergenic
TGTGTGAACCCAAATTGTTC+TGG 0.426197 3_3:-75547962 Msa0473080:CDS
ATGCAGTTCTTACCGTGATC+TGG 0.426263 3_3:-75547587 Msa0473080:CDS
ATTTCTAAATTTCTCTCCTA+AGG 0.427458 3_3:+75545539 None:intergenic
TCATTGTAAAGCATCCATTC+AGG 0.429879 3_3:-75546573 Msa0473080:intron
GCATATTCAGCAAGATTGTT+GGG 0.430584 3_3:+75550171 None:intergenic
CTCCTAAGGTACTGAAGATA+AGG 0.430916 3_3:+75545553 None:intergenic
GAATCCAATTTACTTTCAAA+TGG 0.433870 3_3:+75549837 None:intergenic
GTAGGTCGTTCAAGCAATAA+TGG 0.435815 3_3:+75550319 None:intergenic
AGATCTCAAAGCGTCTGAAA+TGG 0.439734 3_3:+75547278 None:intergenic
TTTAACTAGTAATGTGGAAC+AGG 0.443391 3_3:-75549384 Msa0473080:intron
GAACATTTGGTTGGCAAGAA+TGG 0.445371 3_3:+75549122 None:intergenic
ATCAGTCTGGATGGAATTTG+AGG 0.445545 3_3:-75545209 Msa0473080:three_prime_UTR
AAATGTACACTGGAATGAAA+TGG 0.446196 3_3:+75549404 None:intergenic
ACAACACAAGCCGTAGCAGC+TGG 0.447881 3_3:-75549064 Msa0473080:CDS
AATGATTGTGAGCAAAAGAT+TGG 0.447994 3_3:-75550129 Msa0473080:CDS
GTAGTACGTACCTGGTGAAA+AGG 0.449674 3_3:+75553298 None:intergenic
CCGCCATCTGATGTTTCACC+AGG 0.449958 3_3:-75550869 Msa0473080:CDS
GCCTCTTCCTTTATCAGGTA+CGG 0.454469 3_3:+75550898 None:intergenic
GCATTTCATTGTCAATGTAC+TGG 0.457687 3_3:-75548031 Msa0473080:CDS
TTATGGACTTCATGCAGACT+TGG 0.466543 3_3:-75545581 Msa0473080:CDS
GGAAAGGCAAATATTGCATT+GGG 0.466884 3_3:-75552206 Msa0473080:CDS
TCTGGCATCAGGCATGGTAT+AGG 0.467429 3_3:-75552232 Msa0473080:intron
AAACACACCTTTGAATAGCT+TGG 0.472303 3_3:+75552699 None:intergenic
CATACAATTCACTTTAATCT+GGG 0.482197 3_3:+75549487 None:intergenic
AGGCTTTGCTGTAGTCAGAA+GGG 0.482651 3_3:-75545189 Msa0473080:three_prime_UTR
CATGGACTGTCAGATCAGTC+TGG 0.483310 3_3:-75549434 Msa0473080:CDS
ACACTTTGCAGCTTTATTTG+AGG 0.485080 3_3:+75550923 None:intergenic
AATATGCATGAACATTTGGT+TGG 0.489714 3_3:+75549113 None:intergenic
AGTGTCTCCGTACCTGATAA+AGG 0.493636 3_3:-75550905 Msa0473080:CDS
AAGAGTGTCGAATCATCAAC+AGG 0.494373 3_3:-75552146 Msa0473080:CDS
AGTGGTGTAGAGGAAGAAGA+TGG 0.494688 3_3:-75553434 Msa0473080:exon
TAAGCAATAACTATATCATC+AGG 0.495058 3_3:+75545697 None:intergenic
CGTAGCAGCTGGGTGTCAGC+TGG 0.497449 3_3:-75549053 Msa0473080:CDS
GTCAACAGCATTGGTCGAAT+AGG 0.497911 3_3:-75545622 Msa0473080:CDS
AAATTGTTCTGGCGCAGTGT+TGG 0.499251 3_3:-75547951 Msa0473080:CDS
TATTGTTATAACACTTACTA+CGG 0.506825 3_3:-75545100 Msa0473080:three_prime_UTR
ATGTCAGAAGGCAGTACAGC+AGG 0.510667 3_3:+75550063 None:intergenic
GGCTTTAGATTATTATACTC+AGG 0.514932 3_3:-75553095 Msa0473080:intron
TAACGTAGTCTCGTGAATAT+GGG 0.522517 3_3:-75545052 Msa0473080:three_prime_UTR
AAGAGAGGGAAAGAAAACAA+AGG 0.526427 3_3:-75553458 Msa0473080:five_prime_UTR
TGATGTTTCACCAGGTTCGT+TGG 0.526556 3_3:-75550861 Msa0473080:CDS
GAGGCTTTGCTGTAGTCAGA+AGG 0.526857 3_3:-75545190 Msa0473080:three_prime_UTR
AAACAAAGGAAGTGGTGTAG+AGG 0.527368 3_3:-75553444 Msa0473080:five_prime_UTR
TAGTACGTACCTGGTGAAAA+GGG 0.527455 3_3:+75553299 None:intergenic
CTCTAATGCTGATTATGTCA+AGG 0.527726 3_3:-75553116 Msa0473080:CDS
TGTCAGCTGGAATTGTCTTA+CGG 0.527745 3_3:-75549040 Msa0473080:CDS
AGGAAAGGCAAATATTGCAT+TGG 0.532015 3_3:-75552207 Msa0473080:CDS
GGGAAAGAAAACAAAGGAAG+TGG 0.532284 3_3:-75553452 Msa0473080:five_prime_UTR
GGAAAAGCATTTGATTGGAG+AGG 0.538529 3_3:+75545506 None:intergenic
GGAATTGTCTTACGGTCCAC+AGG 0.539785 3_3:-75549032 Msa0473080:intron
TATTGTCACCCAAGTAAAGT+TGG 0.540829 3_3:+75545650 None:intergenic
TTAAAATCAATAGACGCTCA+TGG 0.541128 3_3:-75549452 Msa0473080:CDS
AAGAACGTAATTATCTTCTG+TGG 0.542033 3_3:+75550203 None:intergenic
CAATGGAATCTCTATATCAC+AGG 0.542199 3_3:-75549751 Msa0473080:intron
CACGAGAGGTGGTTTGATGT+TGG 0.542732 3_3:-75553494 None:intergenic
TGCTGAAGAACCATATGCTA+TGG 0.542990 3_3:-75550834 Msa0473080:intron
CTGCATTTCAAACAGACTCC+AGG 0.545321 3_3:+75547604 None:intergenic
GGAGAACAGCTTGAGTACTA+CGG 0.546828 3_3:-75552039 Msa0473080:CDS
TTCCCGCACAGAGCATAGCT+AGG 0.547122 3_3:+75553187 None:intergenic
ATACAAGGAACTCTATCAGC+AGG 0.548739 3_3:+75550297 None:intergenic
TCAATCACAGCTTAAATGAC+AGG 0.549658 3_3:-75545450 Msa0473080:three_prime_UTR
ATATTTACATGTCACACACT+TGG 0.549891 3_3:-75545159 Msa0473080:three_prime_UTR
AGATTGTCTCAAGATCAGTC+TGG 0.551035 3_3:-75545222 Msa0473080:three_prime_UTR
CACCAATGCCAAATAAAGGC+AGG 0.551316 3_3:-75550246 Msa0473080:CDS
TCATCCGTCCAACTTTACTT+GGG 0.552845 3_3:-75545658 Msa0473080:CDS
AGTGTGTGACATGTAAATAT+CGG 0.554543 3_3:+75545162 None:intergenic
ACACTGACTGCTGAGCGGCT+TGG 0.554958 3_3:+75545368 None:intergenic
CAGCTGACACCCAGCTGCTA+CGG 0.561855 3_3:+75549054 None:intergenic
GAAAGAAAAGATGTCCTGGT+TGG 0.562187 3_3:+75545076 None:intergenic
AGTAGTACAGCCGCGACAGA+AGG 0.563195 3_3:-75552060 Msa0473080:CDS
ACCCTAGCTATGCTCTGTGC+GGG 0.563516 3_3:-75553189 Msa0473080:CDS
TCCGTACCTGATAAAGGAAG+AGG 0.569385 3_3:-75550899 Msa0473080:CDS
GAGAACAGCTTGAGTACTAC+GGG 0.569449 3_3:-75552038 Msa0473080:intron
TCCCGCACAGAGCATAGCTA+GGG 0.570994 3_3:+75553188 None:intergenic
AATAGTGCTGTCAACAGCAT+TGG 0.571018 3_3:-75545631 Msa0473080:CDS
TCAGCATGAACCAACGAACC+TGG 0.571881 3_3:+75550851 None:intergenic
GATATGTCCAAGCTATTCAA+AGG 0.573360 3_3:-75552706 Msa0473080:intron
ATGAATGTCAAGGAGTGCAT+TGG 0.576376 3_3:-75550086 Msa0473080:CDS
TTACTTTATCAGCAACAGCT+AGG 0.576576 3_3:+75547888 None:intergenic
TTATGAAAGAAAAGATGTCC+TGG 0.578078 3_3:+75545072 None:intergenic
GGCTTTGCTGTAGTCAGAAG+GGG 0.580864 3_3:-75545188 Msa0473080:three_prime_UTR
TGTCTCAAGATCAGTCTGGA+TGG 0.581811 3_3:-75545218 Msa0473080:three_prime_UTR
AGGTGGTTTGATGTTGGCAA+AGG 0.584111 3_3:-75553488 None:intergenic
CAATGCCAAATAAAGGCAGG+TGG 0.596184 3_3:-75550243 Msa0473080:CDS
CCAGCCAAAACTATGTCAGA+AGG 0.604974 3_3:+75550051 None:intergenic
TGTACATTTAACTAGTAATG+TGG 0.607675 3_3:-75549390 Msa0473080:CDS
ATATGGAAATGACAGGCTGC+AGG 0.608699 3_3:-75547334 Msa0473080:intron
TGAAATATAGGCATTACGAA+AGG 0.609774 3_3:-75552982 Msa0473080:intron
ATTACTAGTTAAATGTACAC+TGG 0.610954 3_3:+75549394 None:intergenic
TGCATTTCAAACAGACTCCA+GGG 0.616596 3_3:+75547605 None:intergenic
GAACATAAACATGAATGTCA+AGG 0.620275 3_3:-75550096 Msa0473080:CDS
CATTGGTGCGAGCAGTACAA+TGG 0.620389 3_3:+75550261 None:intergenic
CAACACAAGCCGTAGCAGCT+GGG 0.623688 3_3:-75549063 Msa0473080:CDS
ACACTTACTACGGTCCAACC+AGG 0.624236 3_3:-75545090 Msa0473080:three_prime_UTR
TTGGTATGAAAGATCTACAA+TGG 0.624289 3_3:-75545423 Msa0473080:three_prime_UTR
ACCTGATAAAGGAAGAGGCA+TGG 0.627081 3_3:-75550894 Msa0473080:CDS
AAGAAGATGGAGACTCTGAA+AGG 0.627632 3_3:-75553421 Msa0473080:exon
GCAAAGGAAGAAGAAAGAGA+GGG 0.630138 3_3:-75553472 Msa0473080:five_prime_UTR
GTGTCGAATCATCAACAGGA+GGG 0.630754 3_3:-75552142 Msa0473080:CDS
GGTATTGAACACGATATACA+AGG 0.636863 3_3:+75550282 None:intergenic
GTCACCCAAGTAAAGTTGGA+CGG 0.637144 3_3:+75545654 None:intergenic
TATATCTCCTAGGTCAGAGT+GGG 0.639961 3_3:-75549178 Msa0473080:intron
CACGTGAAGACTCCAGATCA+CGG 0.641430 3_3:+75547575 None:intergenic
GCTTCTGTTCATATTCACCC+TGG 0.643407 3_3:-75547622 Msa0473080:CDS
GCGTTGAAATATAAGCAGCT+TGG 0.647283 3_3:-75553151 Msa0473080:CDS
ATACAATAAGGTTATTGCAG+AGG 0.648948 3_3:-75547226 Msa0473080:intron
GACCCTAGCTATGCTCTGTG+CGG 0.649554 3_3:-75553190 Msa0473080:CDS
TGTCACACACTTGGTTCTCG+AGG 0.654841 3_3:-75545150 Msa0473080:three_prime_UTR
AATGCCAAATAAAGGCAGGT+GGG 0.655407 3_3:-75550242 Msa0473080:CDS
AAGGAACTCTATCAGCAGGT+AGG 0.661361 3_3:+75550301 None:intergenic
CATCAGGCATGGTATAGGAG+AGG 0.668519 3_3:-75552227 Msa0473080:intron
AAGACAATATAACAATACAA+TGG 0.671651 3_3:+75549803 None:intergenic
GAACCTGGTGAAACATCAGA+TGG 0.672386 3_3:+75550866 None:intergenic
TCACACAATGAAAAGCATTG+AGG 0.676894 3_3:+75547978 None:intergenic
GGGAGAATTACAATTATCGG+CGG 0.684311 3_3:-75546597 Msa0473080:CDS
AAGCTGTTCTCCTTCTGTCG+CGG 0.691374 3_3:+75552050 None:intergenic
AGTGTCGAATCATCAACAGG+AGG 0.693713 3_3:-75552143 Msa0473080:CDS
GGACTGTCAGATCAGTCTGG+AGG 0.695431 3_3:-75549431 Msa0473080:CDS
GGCATGGTATAGGAGAGGAA+AGG 0.699336 3_3:-75552222 Msa0473080:CDS
GCTTTGCTGTAGTCAGAAGG+GGG 0.705999 3_3:-75545187 Msa0473080:three_prime_UTR
CCTGGTGAAACATCAGATGG+CGG 0.706873 3_3:+75550869 None:intergenic
TTATATCTCCTAGGTCAGAG+TGG 0.711387 3_3:-75549179 Msa0473080:intron
AAGAAACACTGACTGCTGAG+CGG 0.726873 3_3:+75545363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTCAATATGATA+GGG - chr3_3:75548909-75548928 Msa0473080:intron 10.0%
!!! ATTATTATTACTTAGTTTTT+TGG - chr3_3:75549547-75549566 Msa0473080:intron 10.0%
!! AAATAAAATAAATCAAAACA+TGG - chr3_3:75550326-75550345 Msa0473080:CDS 10.0%
!! AAAAAAAAAAAAAAAAAAGC+GGG - chr3_3:75552047-75552066 Msa0473080:CDS 10.0%
!! TTATTAATAGTGAGAAATTA+GGG + chr3_3:75545276-75545295 None:intergenic 15.0%
!! AATAAACTAAGATTACAAAA+AGG + chr3_3:75545865-75545884 None:intergenic 15.0%
!! ATTTATCAAAACAAAGTAAT+TGG - chr3_3:75546020-75546039 Msa0473080:intron 15.0%
!! AAAGATTGAAATATTTATGT+CGG - chr3_3:75546831-75546850 Msa0473080:intron 15.0%
!!! TTTTTTTCCTTTGTTTTTTT+GGG - chr3_3:75548813-75548832 Msa0473080:intron 15.0%
!!! GAATATTTTTTCAATATGAT+AGG - chr3_3:75548908-75548927 Msa0473080:intron 15.0%
!! TATGATAATTTAGACATTAT+TGG - chr3_3:75549271-75549290 Msa0473080:intron 15.0%
!! AACTAAGTAATAATAATTAC+AGG + chr3_3:75549544-75549563 None:intergenic 15.0%
!!! TTTTATTTTTTTATGTTGAG+TGG + chr3_3:75550314-75550333 None:intergenic 15.0%
!!! AAAAAATGAAGTGTTTTAAA+GGG + chr3_3:75550828-75550847 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGCAGAA+TGG + chr3_3:75552027-75552046 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAAAGCG+GGG - chr3_3:75552048-75552067 Msa0473080:CDS 15.0%
!! GTTATTAATAGTGAGAAATT+AGG + chr3_3:75545277-75545296 None:intergenic 20.0%
!!! TTCTCTCTTTTCTTTATTTT+TGG - chr3_3:75545498-75545517 Msa0473080:three_prime_UTR 20.0%
!!! GTTTTTGCAATTTGAAATAT+AGG - chr3_3:75545533-75545552 Msa0473080:exon 20.0%
!! TTAAAAAGTGATTATGAATG+TGG + chr3_3:75545681-75545700 None:intergenic 20.0%
!! CTTAGTTTATTTGTACTATT+AGG - chr3_3:75545874-75545893 Msa0473080:intron 20.0%
!!! TTTTGATAACTTCATTATTC+TGG - chr3_3:75546277-75546296 Msa0473080:intron 20.0%
!! TAAATATTTCAATCTTTCCT+CGG + chr3_3:75546828-75546847 None:intergenic 20.0%
!!! ATTTTCTCATGCTTAATTTT+GGG + chr3_3:75546901-75546920 None:intergenic 20.0%
!!! TATTTTCTCATGCTTAATTT+TGG + chr3_3:75546902-75546921 None:intergenic 20.0%
!! ATTTAATTCTATAAGGAAGA+GGG + chr3_3:75547000-75547019 None:intergenic 20.0%
!! AATTTAATTCTATAAGGAAG+AGG + chr3_3:75547001-75547020 None:intergenic 20.0%
!! GTGCATAATTTAATTCTATA+AGG + chr3_3:75547007-75547026 None:intergenic 20.0%
!!! GCATATTAGTTTCTTAATAT+GGG + chr3_3:75547348-75547367 None:intergenic 20.0%
!!! AGCATATTAGTTTCTTAATA+TGG + chr3_3:75547349-75547368 None:intergenic 20.0%
!!! ATTCAATCCTATTTTACATA+TGG - chr3_3:75547458-75547477 Msa0473080:intron 20.0%
!! ATCTTTCATAAATAAATGCA+AGG + chr3_3:75547518-75547537 None:intergenic 20.0%
!!! ACAAAATGCTTTTAGATAAA+TGG - chr3_3:75547773-75547792 Msa0473080:intron 20.0%
!!! GAATTTGCTTTGAATTAATT+GGG + chr3_3:75547991-75548010 None:intergenic 20.0%
!!! TGAATTTGCTTTGAATTAAT+TGG + chr3_3:75547992-75548011 None:intergenic 20.0%
!! GGATTAATGCTTATAAAATA+TGG + chr3_3:75548095-75548114 None:intergenic 20.0%
!! AAGACAATATAACAATACAA+TGG + chr3_3:75548727-75548746 None:intergenic 20.0%
!! TATTGTCTTAAACATTCTTA+TGG - chr3_3:75548738-75548757 Msa0473080:intron 20.0%
!!! CTTTTTTTCCTTTGTTTTTT+TGG - chr3_3:75548812-75548831 Msa0473080:intron 20.0%
!! AAAATGCATAAATATAGAAC+AGG + chr3_3:75549235-75549254 None:intergenic 20.0%
!! AATGTCTAAATTATCATAGT+AGG + chr3_3:75549269-75549288 None:intergenic 20.0%
!! ATTTCATAATTAGCACATTT+GGG - chr3_3:75549760-75549779 Msa0473080:CDS 20.0%
!!! ATTCATCTTTTAGAAAACTT+TGG + chr3_3:75550474-75550493 None:intergenic 20.0%
!!! GAAAAAATGAAGTGTTTTAA+AGG + chr3_3:75550829-75550848 None:intergenic 20.0%
!!! TTAAAACACTTCATTTTTTC+AGG - chr3_3:75550829-75550848 Msa0473080:intron 20.0%
!!! TAGTTCTGAATAATTTTCAA+AGG + chr3_3:75551056-75551075 None:intergenic 20.0%
!! AAGAGAATAAAGTAAAATCA+TGG - chr3_3:75551474-75551493 Msa0473080:intron 20.0%
!! TAAAAAGAAAATTACCTGAA+TGG + chr3_3:75551971-75551990 None:intergenic 20.0%
!! AAAAAAAAAAAAAAAAGCGG+GGG - chr3_3:75552049-75552068 Msa0473080:CDS 20.0%
!! GTGGAAATATAAATAATTCT+TGG - chr3_3:75552164-75552183 Msa0473080:CDS 20.0%
!! GAAATATAAATAATTCTTGG+TGG - chr3_3:75552167-75552186 Msa0473080:CDS 20.0%
!! TATTGTTATAACACTTACTA+CGG - chr3_3:75553427-75553446 Msa0473080:exon 20.0%
! ATTAGGGATTTAGTTGAAAT+GGG + chr3_3:75545260-75545279 None:intergenic 25.0%
! AATTAGGGATTTAGTTGAAA+TGG + chr3_3:75545261-75545280 None:intergenic 25.0%
! TTTCAAATTACGTTTGTAAG+TGG + chr3_3:75546102-75546121 None:intergenic 25.0%
! TAAATCAACATACTGTTTCA+AGG + chr3_3:75546757-75546776 None:intergenic 25.0%
!!! ATGTTGATTTAAGATACATG+TGG - chr3_3:75546766-75546785 Msa0473080:intron 25.0%
! TATTTACCTACTATTGCTAT+AGG + chr3_3:75546799-75546818 None:intergenic 25.0%
! TATAGCAATAGTAGGTAAAT+AGG - chr3_3:75546798-75546817 Msa0473080:intron 25.0%
! ATAGCAATAGTAGGTAAATA+GGG - chr3_3:75546799-75546818 Msa0473080:intron 25.0%
!! TTTTCTCATGCTTAATTTTG+GGG + chr3_3:75546900-75546919 None:intergenic 25.0%
! GAATTAAATTATGCACCTTA+TGG - chr3_3:75547011-75547030 Msa0473080:intron 25.0%
! TGTAAAATAGGATTGAATAG+CGG + chr3_3:75547456-75547475 None:intergenic 25.0%
! GATTACACCATATGTAAAAT+AGG + chr3_3:75547468-75547487 None:intergenic 25.0%
! AAAAGGAGAGGAAAAATAAA+TGG + chr3_3:75547541-75547560 None:intergenic 25.0%
!!! TCCTTTTTGAGATAATAAGA+TGG - chr3_3:75547554-75547573 Msa0473080:CDS 25.0%
! ACCATCTTATTATCTCAAAA+AGG + chr3_3:75547558-75547577 None:intergenic 25.0%
!!! TTGATACTGTTTTTCTTTTC+AGG - chr3_3:75548154-75548173 Msa0473080:intron 25.0%
! CATCATTGTTATCTGATTAT+AGG - chr3_3:75548603-75548622 Msa0473080:intron 25.0%
!! TATGCCATTTGAAAGTAAAT+TGG - chr3_3:75548686-75548705 Msa0473080:intron 25.0%
! GAATCCAATTTACTTTCAAA+TGG + chr3_3:75548693-75548712 None:intergenic 25.0%
! AAAAAATATTCTGCTACACA+AGG + chr3_3:75548899-75548918 None:intergenic 25.0%
! CATACAATTCACTTTAATCT+GGG + chr3_3:75549043-75549062 None:intergenic 25.0%
! TCATACAATTCACTTTAATC+TGG + chr3_3:75549044-75549063 None:intergenic 25.0%
! ATTACTAGTTAAATGTACAC+TGG + chr3_3:75549136-75549155 None:intergenic 25.0%
! TGTACATTTAACTAGTAATG+TGG - chr3_3:75549137-75549156 Msa0473080:CDS 25.0%
! AGAAAATATGCATGAACATT+TGG + chr3_3:75549421-75549440 None:intergenic 25.0%
! GATTTCATAATTAGCACATT+TGG - chr3_3:75549759-75549778 Msa0473080:CDS 25.0%
! TTTCATAATTAGCACATTTG+GGG - chr3_3:75549761-75549780 Msa0473080:CDS 25.0%
! GCTCAAAATAATATAGTAGT+AGG - chr3_3:75549946-75549965 Msa0473080:intron 25.0%
! ATTATCTTATACCAAGAGTT+AGG - chr3_3:75550005-75550024 Msa0473080:CDS 25.0%
! TTGTTACAATTGCTTCAAAA+TGG + chr3_3:75550225-75550244 None:intergenic 25.0%
! GTATATTGAAACATTGAACA+AGG + chr3_3:75550404-75550423 None:intergenic 25.0%
! AAGCCTTAATATGCATAAAA+AGG - chr3_3:75550987-75551006 Msa0473080:intron 25.0%
!! GTACCTTTTTATGCATATTA+AGG + chr3_3:75550993-75551012 None:intergenic 25.0%
!! TGAATAATTTTCAAAGGTGA+GGG + chr3_3:75551050-75551069 None:intergenic 25.0%
! ACTATTGAATAGTTTCCAAT+TGG - chr3_3:75551075-75551094 Msa0473080:intron 25.0%
! CTATTGAATAGTTTCCAATT+GGG - chr3_3:75551076-75551095 Msa0473080:intron 25.0%
! TATTGAATAGTTTCCAATTG+GGG - chr3_3:75551077-75551096 Msa0473080:intron 25.0%
! AGCTGATAGTAAATATTAGA+TGG - chr3_3:75551138-75551157 Msa0473080:intron 25.0%
! AAATTTGCATGCATACAATA+AGG - chr3_3:75551289-75551308 Msa0473080:intron 25.0%
! AACATATGAAAACTGTACTT+AGG + chr3_3:75551357-75551376 None:intergenic 25.0%
!! TACAGTTTTCATATGTTTGT+TGG - chr3_3:75551360-75551379 Msa0473080:intron 25.0%
!! GTTTGTTGGACTATTTATAT+TGG - chr3_3:75551374-75551393 Msa0473080:intron 25.0%
! TGTCCTATTAATTGTGAATT+AGG - chr3_3:75551417-75551436 Msa0473080:intron 25.0%
! AGTCCTAATTCACAATTAAT+AGG + chr3_3:75551423-75551442 None:intergenic 25.0%
!! TAACTTTCATTTTCTTGTCA+TGG - chr3_3:75551859-75551878 Msa0473080:intron 25.0%
!!! AGTTTCCAAGTAACTTTTTT+CGG - chr3_3:75552139-75552158 Msa0473080:CDS 25.0%
! ATTACTTTAACCATCATTCT+TGG + chr3_3:75552768-75552787 None:intergenic 25.0%
! TAAGCAATAACTATATCATC+AGG + chr3_3:75552833-75552852 None:intergenic 25.0%
! ATTTCTAAATTTCTCTCCTA+AGG + chr3_3:75552991-75553010 None:intergenic 25.0%
! GTCTTTGAATTGATATATTC+AGG - chr3_3:75553203-75553222 Msa0473080:CDS 25.0%
AGAAACTCAAACAAGCAATT+AGG - chr3_3:75545140-75545159 Msa0473080:three_prime_UTR 30.0%
GAAACTCAAACAAGCAATTA+GGG - chr3_3:75545141-75545160 Msa0473080:three_prime_UTR 30.0%
!! GGCTTTAGATTATTATACTC+AGG - chr3_3:75545432-75545451 Msa0473080:three_prime_UTR 30.0%
TGAAATATAGGCATTACGAA+AGG - chr3_3:75545545-75545564 Msa0473080:CDS 30.0%
TCAATTTCACCAACTTCAAA+AGG + chr3_3:75545573-75545592 None:intergenic 30.0%
AGTGATTATGAATGTGGTTA+AGG + chr3_3:75545675-75545694 None:intergenic 30.0%
CACACATACACATGAATAAA+TGG + chr3_3:75545736-75545755 None:intergenic 30.0%
TACTACTATATTTGTGCTCT+TGG + chr3_3:75546454-75546473 None:intergenic 30.0%
!! GTGTTTCACTTTTGAATTCT+GGG - chr3_3:75546632-75546651 Msa0473080:CDS 30.0%
GATTGTGGACATATATCTTA+TGG + chr3_3:75546695-75546714 None:intergenic 30.0%
GCATGATTAAGAAATGATTG+TGG + chr3_3:75546710-75546729 None:intergenic 30.0%
!!! TGAAGTACATTTCTGGTTTT+TGG + chr3_3:75546732-75546751 None:intergenic 30.0%
CTAGAAGATGAATGAAACTA+AGG - chr3_3:75546939-75546958 Msa0473080:intron 30.0%
TAAGCCACATGTTTAAACAA+AGG + chr3_3:75547103-75547122 None:intergenic 30.0%
!! GACTTTTTGAAGGCTTTTTA+GGG + chr3_3:75547154-75547173 None:intergenic 30.0%
!! TGACTTTTTGAAGGCTTTTT+AGG + chr3_3:75547155-75547174 None:intergenic 30.0%
GGAATGAGAAGAATAAAGTA+AGG + chr3_3:75547197-75547216 None:intergenic 30.0%
TACTTTATTCTTCTCATTCC+TGG - chr3_3:75547197-75547216 Msa0473080:intron 30.0%
TTTGATGTGAATTAGTACTG+AGG + chr3_3:75547311-75547330 None:intergenic 30.0%
ACCATAGTATAGAATGCATA+CGG + chr3_3:75547490-75547509 None:intergenic 30.0%
CTTATTATCTCAAAAAGGAG+AGG + chr3_3:75547553-75547572 None:intergenic 30.0%
! TTGTTTCTTACCATAGCATA+TGG + chr3_3:75547706-75547725 None:intergenic 30.0%
! TTTTACAATCTCGCAAGTTT+AGG - chr3_3:75547812-75547831 Msa0473080:intron 30.0%
TTTACAATCTCGCAAGTTTA+GGG - chr3_3:75547813-75547832 Msa0473080:intron 30.0%
!!! TTCAGCATTTTTTTATTGCC+TGG - chr3_3:75547889-75547908 Msa0473080:intron 30.0%
ACTATTAAGTACAGTTCCAA+GGG + chr3_3:75547948-75547967 None:intergenic 30.0%
AACTATTAAGTACAGTTCCA+AGG + chr3_3:75547949-75547968 None:intergenic 30.0%
! CTACAAGAGTTTGCTTATAT+TGG - chr3_3:75548031-75548050 Msa0473080:CDS 30.0%
AAGAACGTAATTATCTTCTG+TGG + chr3_3:75548327-75548346 None:intergenic 30.0%
AATGATTGTGAGCAAAAGAT+TGG - chr3_3:75548398-75548417 Msa0473080:intron 30.0%
GAACATAAACATGAATGTCA+AGG - chr3_3:75548431-75548450 Msa0473080:intron 30.0%
! TTTTTGTCAAAGAACTCATC+TGG - chr3_3:75548515-75548534 Msa0473080:intron 30.0%
GTTATCTGATTATAGGTATC+TGG - chr3_3:75548610-75548629 Msa0473080:intron 30.0%
TGATATAGAGATTCCATTGA+TGG + chr3_3:75548775-75548794 None:intergenic 30.0%
!!! TTCCTTTGTTTTTTTGGGTA+TGG - chr3_3:75548818-75548837 Msa0473080:intron 30.0%
ATCCATACCCAAAAAAACAA+AGG + chr3_3:75548823-75548842 None:intergenic 30.0%
TGACAAAACAAGATGAAACT+TGG + chr3_3:75548998-75549017 None:intergenic 30.0%
!!! TCATCTTGTTTTGTCAATAC+AGG - chr3_3:75549002-75549021 Msa0473080:intron 30.0%
TTAAAATCAATAGACGCTCA+TGG - chr3_3:75549075-75549094 Msa0473080:CDS 30.0%
AAATGTACACTGGAATGAAA+TGG + chr3_3:75549126-75549145 None:intergenic 30.0%
TTTAACTAGTAATGTGGAAC+AGG - chr3_3:75549143-75549162 Msa0473080:CDS 30.0%
CTGCACATATACTTATCAAT+TGG - chr3_3:75549177-75549196 Msa0473080:intron 30.0%
AATTTAGACATTATTGGCGA+TGG - chr3_3:75549277-75549296 Msa0473080:intron 30.0%
!!! GCGATGGCAATTTTTTTTTT+GGG - chr3_3:75549293-75549312 Msa0473080:intron 30.0%
! CTAGGAGATATAATGGAATA+TGG + chr3_3:75549341-75549360 None:intergenic 30.0%
CATATTCCATTATATCTCCT+AGG - chr3_3:75549339-75549358 Msa0473080:intron 30.0%
GGCAAAGCTATTTATAAAGT+TGG - chr3_3:75549370-75549389 Msa0473080:intron 30.0%
AATATGCATGAACATTTGGT+TGG + chr3_3:75549417-75549436 None:intergenic 30.0%
CTTTATCAGATCAAGCTTTA+GGG + chr3_3:75549640-75549659 None:intergenic 30.0%
TCTTTATCAGATCAAGCTTT+AGG + chr3_3:75549641-75549660 None:intergenic 30.0%
! ATTTCAACAGAAATTTTGCC+AGG + chr3_3:75549736-75549755 None:intergenic 30.0%
GTCAAGAAACCAATTTCAAA+AGG - chr3_3:75549834-75549853 Msa0473080:CDS 30.0%
!!! CACTCTTAACCTTTTGAAAT+TGG + chr3_3:75549846-75549865 None:intergenic 30.0%
AAAGGTTAAGAGTGAAAAGA+AGG - chr3_3:75549852-75549871 Msa0473080:CDS 30.0%
! AGTTTTCCTATGGCTAATAA+TGG - chr3_3:75549885-75549904 Msa0473080:intron 30.0%
! TTTCCTCTAATTTTATGTGG+GGG + chr3_3:75550123-75550142 None:intergenic 30.0%
! CTTTCCTCTAATTTTATGTG+GGG + chr3_3:75550124-75550143 None:intergenic 30.0%
! CCTTTCCTCTAATTTTATGT+GGG + chr3_3:75550125-75550144 None:intergenic 30.0%
! TCCTTTCCTCTAATTTTATG+TGG + chr3_3:75550126-75550145 None:intergenic 30.0%
AATGGTTATATGCCAAGATT+GGG + chr3_3:75550207-75550226 None:intergenic 30.0%
AAATGGTTATATGCCAAGAT+TGG + chr3_3:75550208-75550227 None:intergenic 30.0%
! CAACTTTTTGTTGAGCTTTT+AGG - chr3_3:75550242-75550261 Msa0473080:CDS 30.0%
!! TTGAGCTTTTAGGAAGTTAT+AGG - chr3_3:75550252-75550271 Msa0473080:CDS 30.0%
AATTGTATTTCCACGACATA+TGG - chr3_3:75550275-75550294 Msa0473080:CDS 30.0%
TTATGTTGAGTGGAAATGAT+CGG + chr3_3:75550304-75550323 None:intergenic 30.0%
! TGATAAAGTAAGCTACTTTG+AGG - chr3_3:75550651-75550670 Msa0473080:intron 30.0%
! GATAAAGTAAGCTACTTTGA+GGG - chr3_3:75550652-75550671 Msa0473080:intron 30.0%
! ACATATGTTGCTTAGCATTT+AGG - chr3_3:75550758-75550777 Msa0473080:intron 30.0%
GGAGAAAATAGTTCAAACAT+AGG + chr3_3:75550807-75550826 None:intergenic 30.0%
! CTGAATAATTTTCAAAGGTG+AGG + chr3_3:75551051-75551070 None:intergenic 30.0%
ATTGAATAGTTTCCAATTGG+GGG - chr3_3:75551078-75551097 Msa0473080:intron 30.0%
ACAGTTTACAGACTGAAATA+TGG - chr3_3:75551176-75551195 Msa0473080:intron 30.0%
ATACAATAAGGTTATTGCAG+AGG - chr3_3:75551301-75551320 Msa0473080:intron 30.0%
TATGAAAACTGTACTTAGGA+TGG + chr3_3:75551353-75551372 None:intergenic 30.0%
TTCTCCTACAATATCAAACT+TGG - chr3_3:75551521-75551540 Msa0473080:intron 30.0%
GACAAGATTCATGAAATGTT+TGG - chr3_3:75551559-75551578 Msa0473080:intron 30.0%
! AAATCTTTTAACCAAGCTTC+AGG + chr3_3:75551619-75551638 None:intergenic 30.0%
AGTGGGAGAATTACAATTAT+CGG - chr3_3:75551927-75551946 Msa0473080:intron 30.0%
ACAAACCTACTATCTTAGTT+TGG - chr3_3:75551991-75552010 Msa0473080:intron 30.0%
AAATCATGGTGCATTTACAA+TGG - chr3_3:75552227-75552246 Msa0473080:intron 30.0%
!!! TCATAGGAATGTTTTTAGCT+TGG - chr3_3:75552573-75552592 Msa0473080:intron 30.0%
!!! CATAGGAATGTTTTTAGCTT+GGG - chr3_3:75552574-75552593 Msa0473080:intron 30.0%
! ACAAACAAAAGCTTGCTTAT+GGG + chr3_3:75552679-75552698 None:intergenic 30.0%
! AACAAACAAAAGCTTGCTTA+TGG + chr3_3:75552680-75552699 None:intergenic 30.0%
! GATTGATAACAAGACCATAT+GGG + chr3_3:75552733-75552752 None:intergenic 30.0%
! AGATTGATAACAAGACCATA+TGG + chr3_3:75552734-75552753 None:intergenic 30.0%
!! GCTATTTTCTCACGTTATTA+TGG - chr3_3:75552929-75552948 Msa0473080:CDS 30.0%
TTGGTATGAAAGATCTACAA+TGG - chr3_3:75553104-75553123 Msa0473080:CDS 30.0%
TTGTTGTCGATGTAGTTAAA+TGG - chr3_3:75553265-75553284 Msa0473080:intron 30.0%
TGTTGTCGATGTAGTTAAAT+GGG - chr3_3:75553266-75553285 Msa0473080:intron 30.0%
AGTGTGTGACATGTAAATAT+CGG + chr3_3:75553368-75553387 None:intergenic 30.0%
ATATTTACATGTCACACACT+TGG - chr3_3:75553368-75553387 Msa0473080:CDS 30.0%
TTATGAAAGAAAAGATGTCC+TGG + chr3_3:75553458-75553477 None:intergenic 30.0%
AAGAGAGGGAAAGAAAACAA+AGG - chr3_3:75545069-75545088 Msa0473080:three_prime_UTR 35.0%
! ATTGCTTGTTTGAGTTTCTC+TGG + chr3_3:75545139-75545158 None:intergenic 35.0%
GATTTAGTTGAAATGGGAGA+AGG + chr3_3:75545254-75545273 None:intergenic 35.0%
! CTCTAATGCTGATTATGTCA+AGG - chr3_3:75545411-75545430 Msa0473080:three_prime_UTR 35.0%
! AAGATTCATTTTCTGCAGCA+GGG + chr3_3:75545763-75545782 None:intergenic 35.0%
! AAAGATTCATTTTCTGCAGC+AGG + chr3_3:75545764-75545783 None:intergenic 35.0%
GATATGTCCAAGCTATTCAA+AGG - chr3_3:75545821-75545840 Msa0473080:intron 35.0%
AAACACACCTTTGAATAGCT+TGG + chr3_3:75545831-75545850 None:intergenic 35.0%
TCGACAGAAACTTGATCATT+CGG + chr3_3:75546158-75546177 None:intergenic 35.0%
GCATTGAAGTTTGATGTAGT+TGG - chr3_3:75546204-75546223 Msa0473080:intron 35.0%
AACTTCATTATTCTGGCATC+AGG - chr3_3:75546284-75546303 Msa0473080:intron 35.0%
AGGAAAGGCAAATATTGCAT+TGG - chr3_3:75546320-75546339 Msa0473080:intron 35.0%
GGAAAGGCAAATATTGCATT+GGG - chr3_3:75546321-75546340 Msa0473080:intron 35.0%
CTATATTTGTGCTCTTGGAT+TGG + chr3_3:75546449-75546468 None:intergenic 35.0%
!! AATTTGCTAGCTGCTTAACA+AGG + chr3_3:75546526-75546545 None:intergenic 35.0%
TTGTTAAGCAGCTAGCAAAT+TGG - chr3_3:75546525-75546544 Msa0473080:intron 35.0%
!! AAATTGGTTAAGGCTTGTTG+AGG - chr3_3:75546541-75546560 Msa0473080:intron 35.0%
!! CGTGTTTCACTTTTGAATTC+TGG - chr3_3:75546631-75546650 Msa0473080:CDS 35.0%
TTGAATTCTGGGTGATTCTT+TGG - chr3_3:75546643-75546662 Msa0473080:intron 35.0%
TGAATTCTGGGTGATTCTTT+GGG - chr3_3:75546644-75546663 Msa0473080:intron 35.0%
CAAGGATTGAAGTACATTTC+TGG + chr3_3:75546739-75546758 None:intergenic 35.0%
!! AAAGGTATCCAAGACTGAAT+AGG + chr3_3:75546873-75546892 None:intergenic 35.0%
!! GCTTAATTTTGGGGAACTAA+AGG + chr3_3:75546891-75546910 None:intergenic 35.0%
AATTATGCACCTTATGGACT+AGG - chr3_3:75547017-75547036 Msa0473080:intron 35.0%
! ATTATGCACCTTATGGACTA+GGG - chr3_3:75547018-75547037 Msa0473080:intron 35.0%
ACATGTTTAAACAAAGGCAG+GGG + chr3_3:75547097-75547116 None:intergenic 35.0%
CACATGTTTAAACAAAGGCA+GGG + chr3_3:75547098-75547117 None:intergenic 35.0%
!! TTTTGAAGGCTTTTTAGGGA+TGG + chr3_3:75547150-75547169 None:intergenic 35.0%
! GTATGCAAGTGACTTTTTGA+AGG + chr3_3:75547164-75547183 None:intergenic 35.0%
TGCTAGAAAACTTCAATCAG+AGG - chr3_3:75547365-75547384 Msa0473080:intron 35.0%
TCCGTATGCATTCTATACTA+TGG - chr3_3:75547486-75547505 Msa0473080:intron 35.0%
!! ACACTTTGCAGCTTTATTTG+AGG + chr3_3:75547607-75547626 None:intergenic 35.0%
! GCTTCAATTGAAAGTACAAG+AGG - chr3_3:75547844-75547863 Msa0473080:intron 35.0%
TGGCGATTATGTAAGCAAAT+AGG - chr3_3:75548051-75548070 Msa0473080:CDS 35.0%
ACAGTCTTCTTGAGATGAAT+GGG - chr3_3:75548115-75548134 Msa0473080:intron 35.0%
! GGTATTGAACACGATATACA+AGG + chr3_3:75548248-75548267 None:intergenic 35.0%
GCATATTCAGCAAGATTGTT+GGG + chr3_3:75548359-75548378 None:intergenic 35.0%
AGCATATTCAGCAAGATTGT+TGG + chr3_3:75548360-75548379 None:intergenic 35.0%
! TGGAGATATCACAAGTTTTG+TGG - chr3_3:75548535-75548554 Msa0473080:intron 35.0%
!! CACAAGTTTTGTGGAAAAGT+TGG - chr3_3:75548544-75548563 Msa0473080:intron 35.0%
! AGCTTTTATTCTTACTGTGC+AGG - chr3_3:75548641-75548660 Msa0473080:intron 35.0%
CAATGGAATCTCTATATCAC+AGG - chr3_3:75548776-75548795 Msa0473080:intron 35.0%
! CTCTATATCACAGGTTGTTT+TGG - chr3_3:75548785-75548804 Msa0473080:intron 35.0%
!!! TCTTGTTTTGTCAATACAGG+TGG - chr3_3:75549005-75549024 Msa0473080:intron 35.0%
!!! GGCGATGGCAATTTTTTTTT+TGG - chr3_3:75549292-75549311 Msa0473080:intron 35.0%
!! GTCCACAGGTAACTTATTTT+TGG - chr3_3:75549509-75549528 Msa0473080:intron 35.0%
CTCCAAAAATAAGTTACCTG+TGG + chr3_3:75549514-75549533 None:intergenic 35.0%
GGTTCATATTCTTGACAACA+TGG - chr3_3:75549790-75549809 Msa0473080:CDS 35.0%
! ATCATGAGTGAGTTTTCCTA+TGG - chr3_3:75549875-75549894 Msa0473080:intron 35.0%
TCAATGCCATTATTAGCCAT+AGG + chr3_3:75549894-75549913 None:intergenic 35.0%
TATGGCTAATAATGGCATTG+AGG - chr3_3:75549893-75549912 Msa0473080:intron 35.0%
! ATGGCTAATAATGGCATTGA+GGG - chr3_3:75549894-75549913 Msa0473080:intron 35.0%
!! AATCTTCTATTAGTGGGCTT+GGG + chr3_3:75550060-75550079 None:intergenic 35.0%
! GAAGACTACATTTTCTCTAC+GGG + chr3_3:75550101-75550120 None:intergenic 35.0%
! GGAAGACTACATTTTCTCTA+CGG + chr3_3:75550102-75550121 None:intergenic 35.0%
CCCACATAAAATTAGAGGAA+AGG - chr3_3:75550122-75550141 Msa0473080:CDS 35.0%
ATGGTTATATGCCAAGATTG+GGG + chr3_3:75550206-75550225 None:intergenic 35.0%
! CAGATAAAGTTCTGTTTTGC+AGG - chr3_3:75550423-75550442 Msa0473080:intron 35.0%
! TAAAGTTCTGTTTTGCAGGT+TGG - chr3_3:75550427-75550446 Msa0473080:intron 35.0%
! AAAGTTCTGTTTTGCAGGTT+GGG - chr3_3:75550428-75550447 Msa0473080:intron 35.0%
GCATTTCATTGTCAATGTAC+TGG - chr3_3:75550496-75550515 Msa0473080:intron 35.0%
!! TCACACAATGAAAAGCATTG+AGG + chr3_3:75550552-75550571 None:intergenic 35.0%
TTACTTTATCAGCAACAGCT+AGG + chr3_3:75550642-75550661 None:intergenic 35.0%
ATATGTAGAGTTGAGTGACT+TGG - chr3_3:75550720-75550739 Msa0473080:intron 35.0%
TTGCTTAGCATTTAGGAGTT+GGG - chr3_3:75550765-75550784 Msa0473080:intron 35.0%
!!! TATGAACAGAAGCGTCATTT+TGG + chr3_3:75550898-75550917 None:intergenic 35.0%
AAGGTACACACTGTTCAATT+TGG - chr3_3:75551006-75551025 Msa0473080:intron 35.0%
TGAGGGAAAAGCTGTTATTA+GGG + chr3_3:75551033-75551052 None:intergenic 35.0%
TATTTACTATCAGCTCATGC+AGG + chr3_3:75551133-75551152 None:intergenic 35.0%
GACTGAAATATGGAAATGAC+AGG - chr3_3:75551186-75551205 Msa0473080:intron 35.0%
CATGCCAAGTTTGATATTGT+AGG + chr3_3:75551528-75551547 None:intergenic 35.0%
CTACTTACACTATCAAGTCT+TGG + chr3_3:75551740-75551759 None:intergenic 35.0%
TCCCACTAAACAAAAAGCTT+GGG + chr3_3:75551914-75551933 None:intergenic 35.0%
! TCATTGTAAAGCATCCATTC+AGG - chr3_3:75551954-75551973 Msa0473080:intron 35.0%
GTATCTCTTTCTGAATAGCT+AGG - chr3_3:75552109-75552128 Msa0473080:CDS 35.0%
! TTTTCATTTCCCTCTCCATA+TGG + chr3_3:75552373-75552392 None:intergenic 35.0%
TGGAGAGGGAAATGAAAAAA+TGG - chr3_3:75552375-75552394 Msa0473080:intron 35.0%
CTAATGAACACATAAACCTG+TGG + chr3_3:75552447-75552466 None:intergenic 35.0%
CACAGGTTTATGTGTTCATT+AGG - chr3_3:75552445-75552464 Msa0473080:intron 35.0%
AGGTTTATGTGTTCATTAGG+AGG - chr3_3:75552448-75552467 Msa0473080:intron 35.0%
AAAGACCTCTCATTTCTCAA+TGG + chr3_3:75552518-75552537 None:intergenic 35.0%
TTTAATGCACATAGCCATAC+AGG - chr3_3:75552536-75552555 Msa0473080:intron 35.0%
! AATTAAGTCTTGTAGAGCCA+TGG - chr3_3:75552648-75552667 Msa0473080:intron 35.0%
ATCAGACTTTCCAAGAATGA+TGG - chr3_3:75552755-75552774 Msa0473080:CDS 35.0%
!!! CTTTTTTCCGTTGCAGATTT+TGG - chr3_3:75552793-75552812 Msa0473080:intron 35.0%
ATCTTCTCCAAAATCTGCAA+CGG + chr3_3:75552803-75552822 None:intergenic 35.0%
TATTGTCACCCAAGTAAAGT+TGG + chr3_3:75552880-75552899 None:intergenic 35.0%
TTCCTTATCTTCAGTACCTT+AGG - chr3_3:75552972-75552991 Msa0473080:CDS 35.0%
!! TTGCTGGAAAAGCATTTGAT+TGG + chr3_3:75553029-75553048 None:intergenic 35.0%
! AAATGCTTTTCCAGCAAAGT+GGG - chr3_3:75553032-75553051 Msa0473080:intron 35.0%
TCAATCACAGCTTAAATGAC+AGG - chr3_3:75553077-75553096 Msa0473080:intron 35.0%
AGCTTAAATGACAGGTCATT+TGG - chr3_3:75553085-75553104 Msa0473080:intron 35.0%
! CGAGTAATTTTTCTTGAGGT+TGG + chr3_3:75553131-75553150 None:intergenic 35.0%
! GCATCGAGTAATTTTTCTTG+AGG + chr3_3:75553135-75553154 None:intergenic 35.0%
ATAACGTAGTCTCGTGAATA+TGG - chr3_3:75553474-75553493 Msa0473080:five_prime_UTR 35.0%
TAACGTAGTCTCGTGAATAT+GGG - chr3_3:75553475-75553494 Msa0473080:five_prime_UTR 35.0%
GCAAAGGAAGAAGAAAGAGA+GGG - chr3_3:75545055-75545074 Msa0473080:three_prime_UTR 40.0%
GGGAAAGAAAACAAAGGAAG+TGG - chr3_3:75545075-75545094 Msa0473080:three_prime_UTR 40.0%
AAACAAAGGAAGTGGTGTAG+AGG - chr3_3:75545083-75545102 Msa0473080:three_prime_UTR 40.0%
AAGAAGATGGAGACTCTGAA+AGG - chr3_3:75545106-75545125 Msa0473080:three_prime_UTR 40.0%
TAGTACGTACCTGGTGAAAA+GGG + chr3_3:75545231-75545250 None:intergenic 40.0%
GCGTTGAAATATAAGCAGCT+TGG - chr3_3:75545376-75545395 Msa0473080:three_prime_UTR 40.0%
! TTCTGTCGAGAGACAGATTT+TGG - chr3_3:75546169-75546188 Msa0473080:intron 40.0%
! TCTGTCGAGAGACAGATTTT+GGG - chr3_3:75546170-75546189 Msa0473080:intron 40.0%
!! AAGAGTGTCGAATCATCAAC+AGG - chr3_3:75546381-75546400 Msa0473080:intron 40.0%
AGCAGCTAGCAAATTGGTTA+AGG - chr3_3:75546531-75546550 Msa0473080:intron 40.0%
GATGAGCCTATAGCAATAGT+AGG - chr3_3:75546790-75546809 Msa0473080:intron 40.0%
!!! GGTGTTTTGGCTGAATTTCT+TGG + chr3_3:75546979-75546998 None:intergenic 40.0%
!!! CTATAAGGAAGAGGGTGTTT+TGG + chr3_3:75546992-75547011 None:intergenic 40.0%
CATGTTTAAACAAAGGCAGG+GGG + chr3_3:75547096-75547115 None:intergenic 40.0%
CCACATGTTTAAACAAAGGC+AGG + chr3_3:75547099-75547118 None:intergenic 40.0%
! CCTGCCTTTGTTTAAACATG+TGG - chr3_3:75547096-75547115 Msa0473080:intron 40.0%
AGTCACTTGCATACATCAAG+AGG - chr3_3:75547170-75547189 Msa0473080:intron 40.0%
GTTTGCACACATTTCATTCC+AGG + chr3_3:75547218-75547237 None:intergenic 40.0%
GATTGTATGCTAGACGAGTT+AGG - chr3_3:75547244-75547263 Msa0473080:CDS 40.0%
!! AGTTCTGAGAGAATGGAGAA+GGG + chr3_3:75547285-75547304 None:intergenic 40.0%
!! AAGTTCTGAGAGAATGGAGA+AGG + chr3_3:75547286-75547305 None:intergenic 40.0%
!! GAGGTAAAGTTCTGAGAGAA+TGG + chr3_3:75547292-75547311 None:intergenic 40.0%
CAAACAAAATGTGACCAACG+AGG + chr3_3:75547427-75547446 None:intergenic 40.0%
ATAGGATTGAATAGCGGTCA+GGG + chr3_3:75547450-75547469 None:intergenic 40.0%
AATAGGATTGAATAGCGGTC+AGG + chr3_3:75547451-75547470 None:intergenic 40.0%
TGCTGAAGAACCATATGCTA+TGG - chr3_3:75547693-75547712 Msa0473080:intron 40.0%
! AGTTCTCTGGAAAGAAAACC+AGG + chr3_3:75547910-75547929 None:intergenic 40.0%
! TGGTTTTCTTTCCAGAGAAC+TGG - chr3_3:75547909-75547928 Msa0473080:CDS 40.0%
ATTAAGTACAGTTCCAAGGG+AGG + chr3_3:75547945-75547964 None:intergenic 40.0%
CATTCATCTCAAGAAGACTG+TGG + chr3_3:75548116-75548135 None:intergenic 40.0%
CACAGTCTTCTTGAGATGAA+TGG - chr3_3:75548114-75548133 Msa0473080:intron 40.0%
GTAGGTCGTTCAAGCAATAA+TGG + chr3_3:75548211-75548230 None:intergenic 40.0%
ATACAAGGAACTCTATCAGC+AGG + chr3_3:75548233-75548252 None:intergenic 40.0%
AATGCCAAATAAAGGCAGGT+GGG - chr3_3:75548285-75548304 Msa0473080:intron 40.0%
! ATGAATGTCAAGGAGTGCAT+TGG - chr3_3:75548441-75548460 Msa0473080:intron 40.0%
! ACTGCCTTCTGACATAGTTT+TGG - chr3_3:75548472-75548491 Msa0473080:intron 40.0%
CTGCTACACAAGGTTTATGA+TGG + chr3_3:75548889-75548908 None:intergenic 40.0%
AATATGGCTCAGAATCACGA+AGG + chr3_3:75549325-75549344 None:intergenic 40.0%
CTCTGACCTAGGAGATATAA+TGG + chr3_3:75549348-75549367 None:intergenic 40.0%
TTATATCTCCTAGGTCAGAG+TGG - chr3_3:75549348-75549367 Msa0473080:intron 40.0%
TATATCTCCTAGGTCAGAGT+GGG - chr3_3:75549349-75549368 Msa0473080:intron 40.0%
GAACATTTGGTTGGCAAGAA+TGG + chr3_3:75549408-75549427 None:intergenic 40.0%
TGTCAGCTGGAATTGTCTTA+CGG - chr3_3:75549487-75549506 Msa0473080:CDS 40.0%
! CTTTAGGGATGCTTGATTAC+TGG + chr3_3:75549625-75549644 None:intergenic 40.0%
GCCTATATAAAAGAGTGACC+TGG - chr3_3:75549715-75549734 Msa0473080:intron 40.0%
! GCCAGGTCACTCTTTTATAT+AGG + chr3_3:75549719-75549738 None:intergenic 40.0%
TCTTGACAACATGGCTGAAA+AGG - chr3_3:75549799-75549818 Msa0473080:CDS 40.0%
! TGGCTAATAATGGCATTGAG+GGG - chr3_3:75549895-75549914 Msa0473080:intron 40.0%
!!! AGGGGTATTTTTGCTACGAT+AGG - chr3_3:75549913-75549932 Msa0473080:intron 40.0%
CTTATACCAAGAGTTAGGTC+AGG - chr3_3:75550010-75550029 Msa0473080:CDS 40.0%
ACAATACCTGACCTAACTCT+TGG + chr3_3:75550019-75550038 None:intergenic 40.0%
!! CAATCTTCTATTAGTGGGCT+TGG + chr3_3:75550061-75550080 None:intergenic 40.0%
CGCAGCAATCTTCTATTAGT+GGG + chr3_3:75550066-75550085 None:intergenic 40.0%
TCGCAGCAATCTTCTATTAG+TGG + chr3_3:75550067-75550086 None:intergenic 40.0%
CTTCCCCCACATAAAATTAG+AGG - chr3_3:75550117-75550136 Msa0473080:CDS 40.0%
TGTGTGAACCCAAATTGTTC+TGG - chr3_3:75550565-75550584 Msa0473080:intron 40.0%
GTTGCTTAGCATTTAGGAGT+TGG - chr3_3:75550764-75550783 Msa0473080:intron 40.0%
TGCATTTCAAACAGACTCCA+GGG + chr3_3:75550925-75550944 None:intergenic 40.0%
GTGAGGGAAAAGCTGTTATT+AGG + chr3_3:75551034-75551053 None:intergenic 40.0%
! AGATCTCAAAGCGTCTGAAA+TGG + chr3_3:75551252-75551271 None:intergenic 40.0%
! AGGATGGAGAACTTTTGTGA+AGG + chr3_3:75551337-75551356 None:intergenic 40.0%
!! AAAAGCATTCTCCTGAAGCT+TGG - chr3_3:75551605-75551624 Msa0473080:intron 40.0%
ATCCAAACACAGTCAGAGAT+AGG - chr3_3:75551659-75551678 Msa0473080:intron 40.0%
ATCCTATCTCTGACTGTGTT+TGG + chr3_3:75551664-75551683 None:intergenic 40.0%
TTTGTGCGACCTCAATTGAA+AGG - chr3_3:75551787-75551806 Msa0473080:intron 40.0%
CTAAACAAAAAGCTTGGGCA+AGG + chr3_3:75551909-75551928 None:intergenic 40.0%
!! TGCCCAAGCTTTTTGTTTAG+TGG - chr3_3:75551909-75551928 Msa0473080:intron 40.0%
!! GCCCAAGCTTTTTGTTTAGT+GGG - chr3_3:75551910-75551929 Msa0473080:intron 40.0%
CTCCCACTAAACAAAAAGCT+TGG + chr3_3:75551915-75551934 None:intergenic 40.0%
GGGAGAATTACAATTATCGG+CGG - chr3_3:75551930-75551949 Msa0473080:intron 40.0%
! ACCTACTATCTTAGTTTGGC+TGG - chr3_3:75551995-75552014 Msa0473080:intron 40.0%
ACCAGCCAAACTAAGATAGT+AGG + chr3_3:75551999-75552018 None:intergenic 40.0%
GGGAGTAGAAGTTTGGTTAT+TGG - chr3_3:75552069-75552088 Msa0473080:CDS 40.0%
CACTGCCGAAAAAAGTTACT+TGG + chr3_3:75552147-75552166 None:intergenic 40.0%
!!! CAAGTAACTTTTTTCGGCAG+TGG - chr3_3:75552145-75552164 Msa0473080:CDS 40.0%
TAGCGTTACACTGGAAATCA+TGG - chr3_3:75552213-75552232 Msa0473080:CDS 40.0%
TCACGCTAATTCTCATAGCA+AGG + chr3_3:75552256-75552275 None:intergenic 40.0%
ACCAAGTGCATGTAACCATA+TGG - chr3_3:75552278-75552297 Msa0473080:intron 40.0%
TCCATATGGTTACATGCACT+TGG + chr3_3:75552282-75552301 None:intergenic 40.0%
TGCATGTAACCATATGGAGA+GGG - chr3_3:75552284-75552303 Msa0473080:intron 40.0%
ATTCTCATTGCACTTCTCAG+CGG + chr3_3:75552325-75552344 None:intergenic 40.0%
! AAATGGCTAGTTGCTGCATT+TGG - chr3_3:75552392-75552411 Msa0473080:intron 40.0%
! AATGGCTAGTTGCTGCATTT+GGG - chr3_3:75552393-75552412 Msa0473080:intron 40.0%
AGGAGCTATTATATACGTCC+TGG - chr3_3:75552468-75552487 Msa0473080:intron 40.0%
GGAGCTATTATATACGTCCT+GGG - chr3_3:75552469-75552488 Msa0473080:intron 40.0%
AAGTCACTCAAATTCTACCC+AGG + chr3_3:75552489-75552508 None:intergenic 40.0%
GGTAGAATTTGAGTGACTTG+TGG - chr3_3:75552490-75552509 Msa0473080:intron 40.0%
TAAAATGCTCACGACCTGTA+TGG + chr3_3:75552553-75552572 None:intergenic 40.0%
! GGTCGTGAGCATTTTATCAT+AGG - chr3_3:75552557-75552576 Msa0473080:intron 40.0%
GAGTGAATGCATTTCCCATA+TGG - chr3_3:75552716-75552735 Msa0473080:CDS 40.0%
TTCATCCGTCCAACTTTACT+TGG - chr3_3:75552868-75552887 Msa0473080:intron 40.0%
TCATCCGTCCAACTTTACTT+GGG - chr3_3:75552869-75552888 Msa0473080:intron 40.0%
AATAGTGCTGTCAACAGCAT+TGG - chr3_3:75552896-75552915 Msa0473080:intron 40.0%
TTATGGACTTCATGCAGACT+TGG - chr3_3:75552946-75552965 Msa0473080:CDS 40.0%
!! CTCCTAAGGTACTGAAGATA+AGG + chr3_3:75552977-75552996 None:intergenic 40.0%
!! GGAAAAGCATTTGATTGGAG+AGG + chr3_3:75553024-75553043 None:intergenic 40.0%
! CAAATGCTTTTCCAGCAAAG+TGG - chr3_3:75553031-75553050 Msa0473080:intron 40.0%
AGATTGTCTCAAGATCAGTC+TGG - chr3_3:75553305-75553324 Msa0473080:intron 40.0%
ATCAGTCTGGATGGAATTTG+AGG - chr3_3:75553318-75553337 Msa0473080:CDS 40.0%
GAAAGAAAAGATGTCCTGGT+TGG + chr3_3:75553454-75553473 None:intergenic 40.0%
GGCAAAGGAAGAAGAAAGAG+AGG - chr3_3:75545054-75545073 Msa0473080:three_prime_UTR 45.0%
AGTGGTGTAGAGGAAGAAGA+TGG - chr3_3:75545093-75545112 Msa0473080:three_prime_UTR 45.0%
! TCATTTCGACCCTTTTCACC+AGG - chr3_3:75545219-75545238 Msa0473080:three_prime_UTR 45.0%
GTAGTACGTACCTGGTGAAA+AGG + chr3_3:75545232-75545251 None:intergenic 45.0%
!!! CGAAAGGCTCCTTTTGAAGT+TGG - chr3_3:75545561-75545580 Msa0473080:CDS 45.0%
TTCTTTGCCTAATTGCCACG+TGG - chr3_3:75546055-75546074 Msa0473080:intron 45.0%
TCTTTGCCTAATTGCCACGT+GGG - chr3_3:75546056-75546075 Msa0473080:intron 45.0%
AACTTTCCCACGTGGCAATT+AGG + chr3_3:75546065-75546084 None:intergenic 45.0%
TGCCACGTGGGAAAGTTTAT+TGG - chr3_3:75546068-75546087 Msa0473080:intron 45.0%
GCCACGTGGGAAAGTTTATT+GGG - chr3_3:75546069-75546088 Msa0473080:intron 45.0%
CCACGTGGGAAAGTTTATTG+GGG - chr3_3:75546070-75546089 Msa0473080:intron 45.0%
! CTGTCGAGAGACAGATTTTG+GGG - chr3_3:75546171-75546190 Msa0473080:intron 45.0%
CATTATTCTGGCATCAGGCA+TGG - chr3_3:75546289-75546308 Msa0473080:intron 45.0%
! AGTGTCGAATCATCAACAGG+AGG - chr3_3:75546384-75546403 Msa0473080:intron 45.0%
GTGTCGAATCATCAACAGGA+GGG - chr3_3:75546385-75546404 Msa0473080:intron 45.0%
GGAGAACAGCTTGAGTACTA+CGG - chr3_3:75546488-75546507 Msa0473080:intron 45.0%
GAGAACAGCTTGAGTACTAC+GGG - chr3_3:75546489-75546508 Msa0473080:intron 45.0%
GTAGGTAAATAGGGTTTCCG+AGG - chr3_3:75546808-75546827 Msa0473080:intron 45.0%
!! TTATGTCGGCTTAGAGCTTG+AGG - chr3_3:75546845-75546864 Msa0473080:intron 45.0%
! TTGAGGTGCCTATTCAGTCT+TGG - chr3_3:75546862-75546881 Msa0473080:intron 45.0%
GTTGTTCTCCCTAGTCCATA+AGG + chr3_3:75547029-75547048 None:intergenic 45.0%
! GGGAGAACAACTCACTGTTT+TGG - chr3_3:75547038-75547057 Msa0473080:intron 45.0%
AGAAACAATCGTTGCCTCGT+TGG - chr3_3:75547410-75547429 Msa0473080:intron 45.0%
AAGATGGTACAGTGCGTTTG+TGG - chr3_3:75547570-75547589 Msa0473080:CDS 45.0%
AGTGTCTCCGTACCTGATAA+AGG - chr3_3:75547622-75547641 Msa0473080:CDS 45.0%
TCCGTACCTGATAAAGGAAG+AGG - chr3_3:75547628-75547647 Msa0473080:CDS 45.0%
GCCTCTTCCTTTATCAGGTA+CGG + chr3_3:75547632-75547651 None:intergenic 45.0%
ACCTGATAAAGGAAGAGGCA+TGG - chr3_3:75547633-75547652 Msa0473080:CDS 45.0%
ACCATGCCTCTTCCTTTATC+AGG + chr3_3:75547637-75547656 None:intergenic 45.0%
GAACCTGGTGAAACATCAGA+TGG + chr3_3:75547664-75547683 None:intergenic 45.0%
TGATGTTTCACCAGGTTCGT+TGG - chr3_3:75547666-75547685 Msa0473080:CDS 45.0%
AAGGAACTCTATCAGCAGGT+AGG + chr3_3:75548229-75548248 None:intergenic 45.0%
CTCGCACCAATGCCAAATAA+AGG - chr3_3:75548277-75548296 Msa0473080:intron 45.0%
CACCAATGCCAAATAAAGGC+AGG - chr3_3:75548281-75548300 Msa0473080:intron 45.0%
! CACCTGCCTTTATTTGGCAT+TGG + chr3_3:75548286-75548305 None:intergenic 45.0%
CAATGCCAAATAAAGGCAGG+TGG - chr3_3:75548284-75548303 Msa0473080:intron 45.0%
TTTGCCCACCTGCCTTTATT+TGG + chr3_3:75548292-75548311 None:intergenic 45.0%
CCAGCCAAAACTATGTCAGA+AGG + chr3_3:75548479-75548498 None:intergenic 45.0%
!!! CCTTCTGACATAGTTTTGGC+TGG - chr3_3:75548476-75548495 Msa0473080:intron 45.0%
! TTAGCACATTTGGGGTTGCA+TGG - chr3_3:75549769-75549788 Msa0473080:CDS 45.0%
TGCTACGATAGGCAAACATG+AGG - chr3_3:75549924-75549943 Msa0473080:intron 45.0%
!! AGTAGCATTGACCCCAATCT+TGG - chr3_3:75550192-75550211 Msa0473080:CDS 45.0%
TGATCGGAAACCATATGTCG+TGG + chr3_3:75550288-75550307 None:intergenic 45.0%
!! TGTTTTGCAGGTTGGGTTGT+GGG - chr3_3:75550435-75550454 Msa0473080:intron 45.0%
ACACTGCGCCAGAACAATTT+GGG + chr3_3:75550576-75550595 None:intergenic 45.0%
AACACTGCGCCAGAACAATT+TGG + chr3_3:75550577-75550596 None:intergenic 45.0%
AAATTGTTCTGGCGCAGTGT+TGG - chr3_3:75550576-75550595 Msa0473080:intron 45.0%
GAGTTGGGAGCTTGGATATA+TGG - chr3_3:75550780-75550799 Msa0473080:intron 45.0%
GCTTCTGTTCATATTCACCC+TGG - chr3_3:75550905-75550924 Msa0473080:CDS 45.0%
CTGCATTTCAAACAGACTCC+AGG + chr3_3:75550926-75550945 None:intergenic 45.0%
ATGCAGTTCTTACCGTGATC+TGG - chr3_3:75550940-75550959 Msa0473080:intron 45.0%
TTATCTAGCTAGCCCCCAAT+TGG + chr3_3:75551093-75551112 None:intergenic 45.0%
! GCTCATGCAGGATTGATAAC+TGG + chr3_3:75551121-75551140 None:intergenic 45.0%
ATATGGAAATGACAGGCTGC+AGG - chr3_3:75551193-75551212 Msa0473080:intron 45.0%
! ATCTCCTCCTCCTTTTCTCT+CGG - chr3_3:75551760-75551779 Msa0473080:intron 45.0%
AAACACACCGAGAGAAAAGG+AGG + chr3_3:75551770-75551789 None:intergenic 45.0%
CACAAACACACCGAGAGAAA+AGG + chr3_3:75551773-75551792 None:intergenic 45.0%
CAGTCCATGCCTTTCAATTG+AGG + chr3_3:75551799-75551818 None:intergenic 45.0%
TGGACTGTGTTCGACAAACA+AGG - chr3_3:75551812-75551831 Msa0473080:intron 45.0%
CTTGGTGGAACTCACGAAAT+TGG - chr3_3:75552182-75552201 Msa0473080:CDS 45.0%
GATTTCCAGTGTAACGCTAC+AGG + chr3_3:75552212-75552231 None:intergenic 45.0%
GTGCATGTAACCATATGGAG+AGG - chr3_3:75552283-75552302 Msa0473080:intron 45.0%
AGGTCATTTCCCTCTCCATA+TGG + chr3_3:75552296-75552315 None:intergenic 45.0%
ATGGAGAGGGAAATGACCTA+TGG - chr3_3:75552297-75552316 Msa0473080:intron 45.0%
! AGTTGCTGCATTTGGGATAG+AGG - chr3_3:75552400-75552419 Msa0473080:intron 45.0%
! GTTGCTGCATTTGGGATAGA+GGG - chr3_3:75552401-75552420 Msa0473080:intron 45.0%
! TTGCTGCATTTGGGATAGAG+GGG - chr3_3:75552402-75552421 Msa0473080:intron 45.0%
!! TGGTGCCATTGAGAAATGAG+AGG - chr3_3:75552510-75552529 Msa0473080:intron 45.0%
GTCACCCAAGTAAAGTTGGA+CGG + chr3_3:75552876-75552895 None:intergenic 45.0%
!! GTCAACAGCATTGGTCGAAT+AGG - chr3_3:75552905-75552924 Msa0473080:intron 45.0%
CACTTTATAGCCCACTTTGC+TGG + chr3_3:75553045-75553064 None:intergenic 45.0%
! AAGAAACACTGACTGCTGAG+CGG + chr3_3:75553167-75553186 None:intergenic 45.0%
TGTCTCAAGATCAGTCTGGA+TGG - chr3_3:75553309-75553328 Msa0473080:CDS 45.0%
! AGGCTTTGCTGTAGTCAGAA+GGG - chr3_3:75553338-75553357 Msa0473080:CDS 45.0%
!! AAAAAAAAAAAAAAAAAAAG+CGG - chr3_3:75552046-75552065 Msa0473080:CDS 5.0%
CCCCAATAAACTTTCCCACG+TGG + chr3_3:75546073-75546092 None:intergenic 50.0%
TCTGGCATCAGGCATGGTAT+AGG - chr3_3:75546295-75546314 Msa0473080:intron 50.0%
CATCAGGCATGGTATAGGAG+AGG - chr3_3:75546300-75546319 Msa0473080:intron 50.0%
GGCATGGTATAGGAGAGGAA+AGG - chr3_3:75546305-75546324 Msa0473080:intron 50.0%
AAGCTGTTCTCCTTCTGTCG+CGG + chr3_3:75546480-75546499 None:intergenic 50.0%
CCTGGTGAAACATCAGATGG+CGG + chr3_3:75547661-75547680 None:intergenic 50.0%
TCAGCATGAACCAACGAACC+TGG + chr3_3:75547679-75547698 None:intergenic 50.0%
CATTGGTGCGAGCAGTACAA+TGG + chr3_3:75548269-75548288 None:intergenic 50.0%
ATGTCAGAAGGCAGTACAGC+AGG + chr3_3:75548467-75548486 None:intergenic 50.0%
GGAGCTATGCTTGCCATCAA+TGG - chr3_3:75548759-75548778 Msa0473080:intron 50.0%
! CATGGACTGTCAGATCAGTC+TGG - chr3_3:75549093-75549112 Msa0473080:CDS 50.0%
GGAATTGTCTTACGGTCCAC+AGG - chr3_3:75549495-75549514 Msa0473080:CDS 50.0%
!! CTGTTTTGCAGGTTGGGTTG+TGG - chr3_3:75550434-75550453 Msa0473080:intron 50.0%
GCATTTAGGAGTTGGGAGCT+TGG - chr3_3:75550772-75550791 Msa0473080:intron 50.0%
CACGTGAAGACTCCAGATCA+CGG + chr3_3:75550955-75550974 None:intergenic 50.0%
GCGACCTCAATTGAAAGGCA+TGG - chr3_3:75551792-75551811 Msa0473080:intron 50.0%
TTGTCATGGTCTGCTGTTGC+AGG - chr3_3:75551873-75551892 Msa0473080:intron 50.0%
AAAGCGGGGGAGTAGAAGTT+TGG - chr3_3:75552062-75552081 Msa0473080:CDS 50.0%
TCCAGTGTAACGCTACAGGT+AGG + chr3_3:75552208-75552227 None:intergenic 50.0%
ACCAACTGCACGTAGCCATA+TGG - chr3_3:75552355-75552374 Msa0473080:intron 50.0%
TCCATATGGCTACGTGCAGT+TGG + chr3_3:75552359-75552378 None:intergenic 50.0%
TGCACGTAGCCATATGGAGA+GGG - chr3_3:75552361-75552380 Msa0473080:intron 50.0%
CTTGCTTATGGGTGCATCCA+TGG + chr3_3:75552668-75552687 None:intergenic 50.0%
! GAGGCTTTGCTGTAGTCAGA+AGG - chr3_3:75553337-75553356 Msa0473080:CDS 50.0%
! GGCTTTGCTGTAGTCAGAAG+GGG - chr3_3:75553339-75553358 Msa0473080:CDS 50.0%
! GCTTTGCTGTAGTCAGAAGG+GGG - chr3_3:75553340-75553359 Msa0473080:CDS 50.0%
! TGTCACACACTTGGTTCTCG+AGG - chr3_3:75553377-75553396 Msa0473080:CDS 50.0%
ACACTTACTACGGTCCAACC+AGG - chr3_3:75553437-75553456 Msa0473080:exon 50.0%
GGGAGAAGGTAGTACGTACC+TGG + chr3_3:75545240-75545259 None:intergenic 55.0%
GACCCTAGCTATGCTCTGTG+CGG - chr3_3:75545337-75545356 Msa0473080:intron 55.0%
ACCCTAGCTATGCTCTGTGC+GGG - chr3_3:75545338-75545357 Msa0473080:intron 55.0%
TCCCGCACAGAGCATAGCTA+GGG + chr3_3:75545342-75545361 None:intergenic 55.0%
TTCCCGCACAGAGCATAGCT+AGG + chr3_3:75545343-75545362 None:intergenic 55.0%
AGTAGTACAGCCGCGACAGA+AGG - chr3_3:75546467-75546486 Msa0473080:intron 55.0%
AAAGGCAGGGGGCTTTCAAG+GGG + chr3_3:75547085-75547104 None:intergenic 55.0%
CAAAGGCAGGGGGCTTTCAA+GGG + chr3_3:75547086-75547105 None:intergenic 55.0%
ACAAAGGCAGGGGGCTTTCA+AGG + chr3_3:75547087-75547106 None:intergenic 55.0%
TGGTACAGTGCGTTTGTGGC+AGG - chr3_3:75547574-75547593 Msa0473080:CDS 55.0%
CCGCCATCTGATGTTTCACC+AGG - chr3_3:75547658-75547677 Msa0473080:CDS 55.0%
GTCAGGAGTCTCCAGTTCTC+TGG + chr3_3:75547923-75547942 None:intergenic 55.0%
GTACAGTTCCAAGGGAGGTC+AGG + chr3_3:75547940-75547959 None:intergenic 55.0%
GGACTGTCAGATCAGTCTGG+AGG - chr3_3:75549096-75549115 Msa0473080:CDS 55.0%
AGCTTTGCCCACTCTGACCT+AGG + chr3_3:75549359-75549378 None:intergenic 55.0%
ACAACACAAGCCGTAGCAGC+TGG - chr3_3:75549463-75549482 Msa0473080:CDS 55.0%
CAACACAAGCCGTAGCAGCT+GGG - chr3_3:75549464-75549483 Msa0473080:CDS 55.0%
GCACAAAGCGCATCTGTGCA+AGG + chr3_3:75549690-75549709 None:intergenic 55.0%
CACACCGAGAGAAAAGGAGG+AGG + chr3_3:75551767-75551786 None:intergenic 55.0%
GCCTACCTGTAGCGTTACAC+TGG - chr3_3:75552204-75552223 Msa0473080:CDS 55.0%
CTGCACGTAGCCATATGGAG+AGG - chr3_3:75552360-75552379 Msa0473080:intron 55.0%
! GAGGGGAAGCGTGATCTAGT+AGG - chr3_3:75552419-75552438 Msa0473080:intron 55.0%
CGTGATCTAGTAGGCTCCAC+AGG - chr3_3:75552428-75552447 Msa0473080:intron 55.0%
TGGAGACTCCTGACCTCCCT+TGG - chr3_3:75547929-75547948 Msa0473080:CDS 60.0%
CAGCTGACACCCAGCTGCTA+CGG + chr3_3:75549476-75549495 None:intergenic 60.0%
GCACTTCTCAGCGGCACCAT+AGG + chr3_3:75552316-75552335 None:intergenic 60.0%
! ACACTGACTGCTGAGCGGCT+TGG + chr3_3:75553162-75553181 None:intergenic 60.0%
CGTAGCAGCTGGGTGTCAGC+TGG - chr3_3:75549474-75549493 Msa0473080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75545044 75553505 75545044 ID=Msa0473080;Name=Msa0473080
chr3_3 mRNA 75545044 75553505 75545044 ID=Msa0473080-mRNA-1;Parent=Msa0473080;Name=Msa0473080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=68|1|1|1|0.93|0.87|16|393|777
chr3_3 exon 75545044 75545269 75545044 ID=Msa0473080-mRNA-1:exon:19648;Parent=Msa0473080-mRNA-1
chr3_3 exon 75545376 75545740 75545376 ID=Msa0473080-mRNA-1:exon:19647;Parent=Msa0473080-mRNA-1
chr3_3 exon 75546574 75546654 75546574 ID=Msa0473080-mRNA-1:exon:19646;Parent=Msa0473080-mRNA-1
chr3_3 exon 75547227 75547341 75547227 ID=Msa0473080-mRNA-1:exon:19645;Parent=Msa0473080-mRNA-1
chr3_3 exon 75547541 75547698 75547541 ID=Msa0473080-mRNA-1:exon:19644;Parent=Msa0473080-mRNA-1
chr3_3 exon 75547892 75548104 75547892 ID=Msa0473080-mRNA-1:exon:19643;Parent=Msa0473080-mRNA-1
chr3_3 exon 75549033 75549188 75549033 ID=Msa0473080-mRNA-1:exon:19642;Parent=Msa0473080-mRNA-1
chr3_3 exon 75549385 75549525 75549385 ID=Msa0473080-mRNA-1:exon:19641;Parent=Msa0473080-mRNA-1
chr3_3 exon 75549752 75549886 75549752 ID=Msa0473080-mRNA-1:exon:19640;Parent=Msa0473080-mRNA-1
chr3_3 exon 75549984 75550373 75549984 ID=Msa0473080-mRNA-1:exon:19639;Parent=Msa0473080-mRNA-1
chr3_3 exon 75550835 75550953 75550835 ID=Msa0473080-mRNA-1:exon:19638;Parent=Msa0473080-mRNA-1
chr3_3 exon 75552039 75552243 75552039 ID=Msa0473080-mRNA-1:exon:19637;Parent=Msa0473080-mRNA-1
chr3_3 exon 75552707 75552778 75552707 ID=Msa0473080-mRNA-1:exon:19636;Parent=Msa0473080-mRNA-1
chr3_3 exon 75552908 75552994 75552908 ID=Msa0473080-mRNA-1:exon:19635;Parent=Msa0473080-mRNA-1
chr3_3 exon 75553096 75553230 75553096 ID=Msa0473080-mRNA-1:exon:19634;Parent=Msa0473080-mRNA-1
chr3_3 exon 75553309 75553505 75553309 ID=Msa0473080-mRNA-1:exon:19633;Parent=Msa0473080-mRNA-1
chr3_3 five_prime_UTR 75553438 75553505 75553438 ID=Msa0473080-mRNA-1:five_prime_utr;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75553309 75553437 75553309 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75553096 75553230 75553096 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75552908 75552994 75552908 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75552707 75552778 75552707 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75552039 75552243 75552039 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75550835 75550953 75550835 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75549984 75550373 75549984 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75549752 75549886 75549752 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75549385 75549525 75549385 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75549033 75549188 75549033 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75547892 75548104 75547892 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75547541 75547698 75547541 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75547227 75547341 75547227 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75546574 75546654 75546574 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 CDS 75545543 75545740 75545543 ID=Msa0473080-mRNA-1:cds;Parent=Msa0473080-mRNA-1
chr3_3 three_prime_UTR 75545376 75545542 75545376 ID=Msa0473080-mRNA-1:three_prime_utr;Parent=Msa0473080-mRNA-1
chr3_3 three_prime_UTR 75545044 75545269 75545044 ID=Msa0473080-mRNA-1:three_prime_utr;Parent=Msa0473080-mRNA-1
Gene Sequence

>Msa0473080

ATGGAGACTCTGAAAGGTGCGATTCCAGAGAAACTCAAACAAGCAATTAGGGATAGCACTGTAAACACTCTTAGCGACACATGTTCTTCTCTTCATAACTTCTTTCTTCATTTCGACCCTTTTCACCAGACTATGACTCAACTTGCAGACCCTAGCTATGCTCTGTGCGGGAAAAGCAAAGAAGCTGCGTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCTAATGCTGATTATGTCAAGGCTTTAGATTATTATACTCAGGCATTACGAAAGGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATCTCATTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTCAGTAGAATGTTTGCGCGACTGTGATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTGGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAAATATAGTAGTACAGCCGCGACAGAAGGAGAACAGCTTGAGTACTACGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCCGCCATCTGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCATATGCTATGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTACTGCTCGCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACGTTCTTAAAAACTTACCCAACAATCTTGCTGAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTGCATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATTTGTACGCCATTGTATTGTTATATTGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATCACAGGTGGTCATAGTTATTTCCCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTGTCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGTTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCGCGCACACTCTATTTACGAACAACACAAGCCGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTACGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATCAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCAATTTAACCAAAATGACGCTTCTGTTCATATTCACCCTGGAGTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCAGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTACAATTATCGGCGGATCATTGTAAAGCATCCATTCAGATTTTGGAGAAGATATATGATCCTGATGATATAGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTACTTGGGTGACAATAGTGCTGTCAACAGCATTGGTCGAATAGGTGCTATTTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTATCTTCAGTACCTTAGGAGAGAAATTTAG

Protein sequence

>Msa0473080

METLKGAIPEKLKQAIRDSTVNTLSDTCSSLHNFFLHFDPFHQTMTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYVKALDYYTQALRKAPFEVGEIENNLIATLYINRATVLHKMNLSVECLRDCDRALQICPSYSKAWYRRGKANIALGNNRDAICDLNIAKSVESSTGGKRQIECELKIILDQSKSTNIVVQPRQKENSLSTTGEMPQIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYVLKNLPNNLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHLYAIVLLYCLKHSYGAMLAINGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLQFNQNDASVHIHPGVCLKCSSYRDLESSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKIYDPDDIVIAYELVKLSSVQLYLGDNSAVNSIGRIGAIFSRYYGLHADLVFPYLQYLRREI*