Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479640 | XP_003603819.2 | 93.562 | 466 | 19 | 3 | 1 | 465 | 1 | 456 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479640 | sp|Q3ECD0|PUS2_ARATH | 65.217 | 391 | 110 | 4 | 62 | 449 | 62 | 429 | 2.72e-174 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479640 | G7J5V2 | 93.562 | 466 | 19 | 3 | 1 | 465 | 1 | 456 | 0.0 | 863 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076550 | Msa0479640 | 0.820284 | 7.438287e-53 | -8.615850e-47 |
| Msa0190400 | Msa0479640 | 0.808289 | 3.331963e-50 | -8.615850e-47 |
| Msa0416530 | Msa0479640 | 0.807614 | 4.637197e-50 | -8.615850e-47 |
| Msa0420280 | Msa0479640 | 0.808133 | 3.597843e-50 | -8.615850e-47 |
| Msa0435740 | Msa0479640 | 0.950857 | 6.907893e-109 | -8.615850e-47 |
| Msa0479640 | Msa0522870 | 0.962091 | 1.820701e-120 | -8.615850e-47 |
| Msa0479640 | Msa0528870 | 0.831853 | 1.318784e-55 | -8.615850e-47 |
| Msa0479640 | Msa1052600 | 0.805611 | 1.227726e-49 | -8.615850e-47 |
| Msa0479640 | Msa1068110 | 0.826455 | 2.687471e-54 | -8.615850e-47 |
| Msa0479640 | Msa1093250 | 0.816467 | 5.448765e-52 | -8.615850e-47 |
| Msa0479640 | Msa1150250 | 0.823912 | 1.072775e-53 | -8.615850e-47 |
| Msa0479640 | Msa1375600 | 0.800536 | 1.376397e-48 | -8.615850e-47 |
| Msa0479640 | Msa1376590 | 0.828432 | 9.017839e-55 | -8.615850e-47 |
| Msa0479640 | Msa1444070 | 0.825205 | 5.322034e-54 | -8.615850e-47 |
| Msa0273550 | Msa0479640 | 0.841212 | 5.448884e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479640 | MtrunA17_Chr3g0143321 | 93.562 | 466 | 19 | 3 | 1 | 465 | 1 | 456 | 0.0 | 863 |
| Msa0479640 | MtrunA17_Chr1g0200011 | 25.510 | 294 | 146 | 8 | 161 | 426 | 95 | 343 | 5.65e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479640 | AT1G76050.2 | 65.217 | 391 | 110 | 4 | 62 | 449 | 62 | 429 | 2.76e-175 | 498 |
| Msa0479640 | AT1G76050.1 | 64.000 | 275 | 73 | 4 | 62 | 333 | 62 | 313 | 1.46e-111 | 332 |
| Msa0479640 | AT3G52260.4 | 27.778 | 234 | 117 | 5 | 161 | 377 | 97 | 295 | 2.63e-15 | 77.4 |
| Msa0479640 | AT3G52260.2 | 27.778 | 234 | 117 | 5 | 161 | 377 | 97 | 295 | 7.37e-15 | 76.3 |
Find 126 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCCGGCGTAATTCGATTT+TGG | 0.204182 | 3_3:-84657188 | None:intergenic |
| TCGTGCGCATGCCAAGTATT+TGG | 0.214985 | 3_3:+84661422 | Msa0479640:CDS |
| ACGGAATTTATAGTTGTTAA+TGG | 0.217365 | 3_3:-84657108 | None:intergenic |
| GAATCTGATGATGAACTTAA+TGG | 0.254410 | 3_3:+84659277 | Msa0479640:CDS |
| ATGAAGTTCGAAAGTGAAAT+TGG | 0.259397 | 3_3:-84657064 | None:intergenic |
| GGGGTACCTACTCCAGTTTC+TGG | 0.276248 | 3_3:+84659622 | Msa0479640:CDS |
| ATCATACGAAGCCGGTTATT+AGG | 0.304094 | 3_3:-84659673 | None:intergenic |
| ACGTCTGGGACACTTGTAAA+TGG | 0.307453 | 3_3:+84659187 | Msa0479640:CDS |
| TGCCTTCATGCTTTGACTCT+CGG | 0.309092 | 3_3:+84661573 | Msa0479640:CDS |
| CGTGCGCATGCCAAGTATTT+GGG | 0.328224 | 3_3:+84661423 | Msa0479640:CDS |
| CGGAATTTATAGTTGTTAAT+GGG | 0.336983 | 3_3:-84657107 | None:intergenic |
| AAAGAAATGTTAAAGAAGTA+TGG | 0.351082 | 3_3:-84661875 | None:intergenic |
| ACCTCAACACGTCCAGAAAC+TGG | 0.356510 | 3_3:-84659634 | None:intergenic |
| GCCTTCATGCTTTGACTCTC+GGG | 0.373527 | 3_3:+84661574 | Msa0479640:CDS |
| CTGCTAGGTGATGAGGTATA+TGG | 0.375337 | 3_3:+84661453 | Msa0479640:CDS |
| AAAGTAATTGAGATACTTGC+TGG | 0.384759 | 3_3:+84660261 | Msa0479640:CDS |
| AAACAGTTTCTGAGCTAGAT+AGG | 0.391798 | 3_3:+84661547 | Msa0479640:CDS |
| TTGAGCCAGCTTCGTAGAAT+TGG | 0.391980 | 3_3:+84661775 | Msa0479640:CDS |
| AAAATGTCATTAAAATCTAC+AGG | 0.393988 | 3_3:-84661754 | None:intergenic |
| TCTTTAGAAAATTCAACATT+TGG | 0.398853 | 3_3:-84659232 | None:intergenic |
| GTTGAGTGGAAGTTGGAAAC+TGG | 0.401765 | 3_3:+84660300 | Msa0479640:CDS |
| TTGTAATTTGTAAGCCGGTT+TGG | 0.406008 | 3_3:+84661844 | Msa0479640:exon |
| TCTAATCTGTGTACAATCCC+TGG | 0.409587 | 3_3:-84659364 | None:intergenic |
| GAAAATTGAGACTCGATAGT+TGG | 0.424427 | 3_3:+84657255 | Msa0479640:CDS |
| GGAAACTGGGCGCACTCATC+AGG | 0.428189 | 3_3:+84660314 | Msa0479640:CDS |
| TTAATGGGAGAGAAGTAAAA+TGG | 0.431537 | 3_3:-84657092 | None:intergenic |
| CCAGCACCTGGCAATACGTC+TGG | 0.433660 | 3_3:+84659172 | Msa0479640:CDS |
| TAGAAAATTCAACATTTGGC+AGG | 0.440551 | 3_3:-84659228 | None:intergenic |
| TGGATTTCTTCTCGCATCAA+TGG | 0.441664 | 3_3:+84657275 | Msa0479640:CDS |
| GTTTCTTTCAATGTCAGAGC+TGG | 0.450108 | 3_3:+84658710 | Msa0479640:CDS |
| CAGAGGTACACCCAAATACT+TGG | 0.452967 | 3_3:-84661433 | None:intergenic |
| CTTCGTATGATCGCTGTAGC+TGG | 0.457054 | 3_3:+84659685 | Msa0479640:CDS |
| TACGACGGTGGAATCAAATC+TGG | 0.460914 | 3_3:+84657233 | Msa0479640:CDS |
| CACTACCAATTCTACGAAGC+TGG | 0.462868 | 3_3:-84661780 | None:intergenic |
| GTCTACGTTAGTCTCACTGC+CGG | 0.477724 | 3_3:+84659601 | Msa0479640:CDS |
| TTATTAGGATCACGGCCAAC+AGG | 0.479835 | 3_3:-84659658 | None:intergenic |
| TTCGGAATTACCATGTGAGC+AGG | 0.484681 | 3_3:-84658842 | None:intergenic |
| CAACATTTGGCAGGTTGCAA+TGG | 0.489674 | 3_3:-84659219 | None:intergenic |
| ACCCTTCAGAAGAACTTGAC+TGG | 0.494113 | 3_3:-84659309 | None:intergenic |
| GGGTATTGTAATTTGTAAGC+CGG | 0.495438 | 3_3:+84661839 | Msa0479640:exon |
| TTTCTTTCAATGTCAGAGCT+GGG | 0.495851 | 3_3:+84658711 | Msa0479640:CDS |
| GAATTACGCCGGCGTGCGGT+TGG | 0.496847 | 3_3:+84657196 | Msa0479640:CDS |
| TTGGCCGTGATCCTAATAAC+CGG | 0.497077 | 3_3:+84659662 | Msa0479640:CDS |
| TGCATTGGTTGAGTGGAAGT+TGG | 0.497604 | 3_3:+84660293 | Msa0479640:CDS |
| TCCAGTTTCTGGACGTGTTG+AGG | 0.498584 | 3_3:+84659633 | Msa0479640:CDS |
| GTTAAAGAAGTATGGTAAGA+AGG | 0.498862 | 3_3:-84661867 | None:intergenic |
| GCTGGACTCGTTCATGTCAA+TGG | 0.501112 | 3_3:+84657332 | Msa0479640:CDS |
| TCACCTACTAGCCGCATGAC+GGG | 0.501679 | 3_3:-84659728 | None:intergenic |
| AACATTTCGCTATGCAAACT+CGG | 0.501751 | 3_3:-84661522 | None:intergenic |
| GTAGCTGTGCATTGGTTGAG+TGG | 0.505625 | 3_3:+84660286 | Msa0479640:CDS |
| CAATGGCCGTGTTGTTGATA+AGG | 0.509560 | 3_3:+84657349 | Msa0479640:CDS |
| GCAGCAGTTGAGAGCTGTGC+CGG | 0.509649 | 3_3:+84658763 | Msa0479640:CDS |
| CATTGTGGTGATACTTGAGC+AGG | 0.510838 | 3_3:+84658688 | Msa0479640:CDS |
| CATAAATAAACCTGCTCACA+TGG | 0.510867 | 3_3:+84658832 | Msa0479640:CDS |
| TCTACGTTAGTCTCACTGCC+GGG | 0.511350 | 3_3:+84659602 | Msa0479640:CDS |
| GTATGGTAAGAAGGCCAAAC+CGG | 0.512644 | 3_3:-84661858 | None:intergenic |
| GTTTATTTATGACTAGCAAA+TGG | 0.513827 | 3_3:-84658820 | None:intergenic |
| AGTGTCCCAGACGTATTGCC+AGG | 0.521402 | 3_3:-84659178 | None:intergenic |
| GTCCAGTCAAGTATTAAAGC+TGG | 0.521976 | 3_3:+84657314 | Msa0479640:CDS |
| GAAATCGTCGACTACGACGG+TGG | 0.522087 | 3_3:+84657221 | Msa0479640:CDS |
| CGGATTTCGCAATGGAGGAA+CGG | 0.524552 | 3_3:-84657127 | None:intergenic |
| TGCAAACTCGGAGTTGTTCG+TGG | 0.526136 | 3_3:-84661510 | None:intergenic |
| TCCCAGTCAAGTTCTTCTGA+AGG | 0.527724 | 3_3:+84659307 | Msa0479640:CDS |
| GTCCAGCTTTAATACTTGAC+TGG | 0.528396 | 3_3:-84657316 | None:intergenic |
| CCCTTCAGAAGAACTTGACT+GGG | 0.529961 | 3_3:-84659308 | None:intergenic |
| AAGCCCGTCATGCGGCTAGT+AGG | 0.531246 | 3_3:+84659725 | Msa0479640:CDS |
| ATCATCGAAGAAAGTAGAAA+CGG | 0.535644 | 3_3:-84657147 | None:intergenic |
| TTCGATGATTCAAACTCCAA+AGG | 0.541777 | 3_3:+84657161 | Msa0479640:CDS |
| TTATCGCTTAACACCTCATG+TGG | 0.549398 | 3_3:+84657008 | Msa0479640:CDS |
| TAGGTTGTGCATCCAGCACC+TGG | 0.549682 | 3_3:+84659160 | Msa0479640:intron |
| CCAGACGTATTGCCAGGTGC+TGG | 0.551763 | 3_3:-84659172 | None:intergenic |
| CTAATCTGTGTACAATCCCT+GGG | 0.557086 | 3_3:-84659363 | None:intergenic |
| CCCAGTCAAGTTCTTCTGAA+GGG | 0.559475 | 3_3:+84659308 | Msa0479640:CDS |
| GGACGTGTTGAGGTTCCTGT+TGG | 0.563398 | 3_3:+84659643 | Msa0479640:CDS |
| TGGGTTACTAGTTGTCGCTA+AGG | 0.563661 | 3_3:+84659399 | Msa0479640:CDS |
| TGTACCTCTGCTAGGTGATG+AGG | 0.565230 | 3_3:+84661446 | Msa0479640:CDS |
| TAGGTTTCAGCATCCTCACA+CGG | 0.569949 | 3_3:+84661702 | Msa0479640:intron |
| TGAAAGTATTTCTCACTCAA+AGG | 0.574310 | 3_3:+84661801 | Msa0479640:CDS |
| AAGTAATTGAGATACTTGCT+GGG | 0.576544 | 3_3:+84660262 | Msa0479640:CDS |
| CAGCACCTGGCAATACGTCT+GGG | 0.578291 | 3_3:+84659173 | Msa0479640:CDS |
| TGTGCCGGAAAACATACCTC+TGG | 0.579322 | 3_3:+84658778 | Msa0479640:CDS |
| TCTGTGGCATCAATTCGCCC+AGG | 0.579381 | 3_3:+84659346 | Msa0479640:CDS |
| GCATGGTCTTGTCATTGCTA+CGG | 0.579433 | 3_3:+84661487 | Msa0479640:CDS |
| AGATTAGACAAAGGCACGAG+TGG | 0.588012 | 3_3:+84659379 | Msa0479640:CDS |
| ATCACCTACTAGCCGCATGA+CGG | 0.592873 | 3_3:-84659729 | None:intergenic |
| TTCTTTCAATGTCAGAGCTG+GGG | 0.593498 | 3_3:+84658712 | Msa0479640:CDS |
| CTAGGTGATGAGGTATATGG+AGG | 0.595073 | 3_3:+84661456 | Msa0479640:CDS |
| TATTTGGGTGTACCTCTGCT+AGG | 0.595506 | 3_3:+84661438 | Msa0479640:CDS |
| AGGTTTCAGCATCCTCACAC+GGG | 0.595831 | 3_3:+84661703 | Msa0479640:intron |
| CTGTGGCATCAATTCGCCCA+GGG | 0.600609 | 3_3:+84659347 | Msa0479640:CDS |
| AAATGTCATTAAAATCTACA+GGG | 0.601078 | 3_3:-84661753 | None:intergenic |
| GTTAGATTCTAGATTGTCTG+TGG | 0.602572 | 3_3:+84659330 | Msa0479640:CDS |
| ACCCGAGAGTCAAAGCATGA+AGG | 0.607294 | 3_3:-84661575 | None:intergenic |
| TTCTGTGAAAGCCCGTCATG+CGG | 0.607595 | 3_3:+84659717 | Msa0479640:CDS |
| TTGAGTGGAAGTTGGAAACT+GGG | 0.615139 | 3_3:+84660301 | Msa0479640:CDS |
| AGAGTCAAAGCATGAAGGCA+AGG | 0.615312 | 3_3:-84661570 | None:intergenic |
| TCAAGCTACGCACTATCAAG+AGG | 0.626322 | 3_3:+84659578 | Msa0479640:CDS |
| AGTAGAAACGGATTTCGCAA+TGG | 0.630315 | 3_3:-84657135 | None:intergenic |
| GAAGAAATCGTCGACTACGA+CGG | 0.630430 | 3_3:+84657218 | Msa0479640:CDS |
| AATCGAATTACGCCGGCGTG+CGG | 0.637848 | 3_3:+84657192 | Msa0479640:CDS |
| CAAGCTACGCACTATCAAGA+GGG | 0.647303 | 3_3:+84659579 | Msa0479640:CDS |
| GATTAGACAAAGGCACGAGT+GGG | 0.651038 | 3_3:+84659380 | Msa0479640:CDS |
| AGTAATTGAGATACTTGCTG+GGG | 0.652006 | 3_3:+84660263 | Msa0479640:CDS |
| CTACAGCGATCATACGAAGC+CGG | 0.657140 | 3_3:-84659681 | None:intergenic |
| AGAAACGGATTTCGCAATGG+AGG | 0.657913 | 3_3:-84657132 | None:intergenic |
| ATATGGAGGGACGAAAAGCA+TGG | 0.659140 | 3_3:+84661470 | Msa0479640:CDS |
| TAATTTGTAGTTGAGCATTG+TGG | 0.661536 | 3_3:+84658673 | Msa0479640:intron |
| GAACCAAAATCGAATTACGC+CGG | 0.662494 | 3_3:+84657185 | Msa0479640:CDS |
| TGAGATCAAATGTACGATTG+CGG | 0.665499 | 3_3:+84658736 | Msa0479640:CDS |
| GGTTTCAGCATCCTCACACG+GGG | 0.666855 | 3_3:+84661704 | Msa0479640:intron |
| CTCACTAGATAGAACTTCCG+CGG | 0.674317 | 3_3:-84656970 | None:intergenic |
| GAAGCCGGTTATTAGGATCA+CGG | 0.679316 | 3_3:-84659666 | None:intergenic |
| GATTTCTTCCAACCGCACGC+CGG | 0.680238 | 3_3:-84657204 | None:intergenic |
| ACACGTCCAGAAACTGGAGT+AGG | 0.683054 | 3_3:-84659628 | None:intergenic |
| TCTTCATAAACTATATCCAG+AGG | 0.684572 | 3_3:-84658794 | None:intergenic |
| CTACGTTAGTCTCACTGCCG+GGG | 0.686770 | 3_3:+84659603 | Msa0479640:CDS |
| AGAAACTGGAGTAGGTACCC+CGG | 0.688257 | 3_3:-84659620 | None:intergenic |
| TAGGTGATGAGGTATATGGA+GGG | 0.689938 | 3_3:+84661457 | Msa0479640:CDS |
| ATGTCATTAAAATCTACAGG+GGG | 0.696305 | 3_3:-84661751 | None:intergenic |
| AATGTCATTAAAATCTACAG+GGG | 0.696801 | 3_3:-84661752 | None:intergenic |
| AACACCGCAAAATCCACATG+AGG | 0.697166 | 3_3:-84657021 | None:intergenic |
| TATACCTCATCACCTAGCAG+AGG | 0.705895 | 3_3:-84661450 | None:intergenic |
| AGACTACCTTATCAACAACA+CGG | 0.706446 | 3_3:-84657355 | None:intergenic |
| ATTGTACACAGATTAGACAA+AGG | 0.708980 | 3_3:+84659370 | Msa0479640:CDS |
| GTAATTGAGATACTTGCTGG+GGG | 0.718933 | 3_3:+84660264 | Msa0479640:CDS |
| GTTTCAGCATCCTCACACGG+GGG | 0.734024 | 3_3:+84661705 | Msa0479640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAATATTGAATTATATT+AGG | + | chr3_3:84659789-84659808 | Msa0479640:intron | 10.0% |
| !! | TAATATTACATATTACATTT+GGG | + | chr3_3:84660146-84660165 | Msa0479640:intron | 10.0% |
| !! | AAATATTAAAATAGATTTAG+AGG | + | chr3_3:84661172-84661191 | Msa0479640:intron | 10.0% |
| !!! | GTAATATTTTAATCAATAAT+GGG | - | chr3_3:84661905-84661924 | None:intergenic | 10.0% |
| !!! | TGTAATATTTTAATCAATAA+TGG | - | chr3_3:84661906-84661925 | None:intergenic | 10.0% |
| !! | ATCATTTAAATATTCAAGAA+TGG | - | chr3_3:84658195-84658214 | None:intergenic | 15.0% |
| !! | ATATTACATATATTTAGCAA+TGG | - | chr3_3:84660132-84660151 | None:intergenic | 15.0% |
| !! | GTAATATTACATATTACATT+TGG | + | chr3_3:84660145-84660164 | Msa0479640:intron | 15.0% |
| !!! | GTTTTCATATATTATATCTT+AGG | - | chr3_3:84660619-84660638 | None:intergenic | 15.0% |
| !! | TTAGAAGATATTATAAGTTT+AGG | - | chr3_3:84661378-84661397 | None:intergenic | 15.0% |
| !!! | ATTACTACGAATTTTCTATT+TGG | + | chr3_3:84657431-84657450 | Msa0479640:intron | 20.0% |
| !!! | AATAAATAAATGCTCACTTT+TGG | - | chr3_3:84657707-84657726 | None:intergenic | 20.0% |
| !! | AAATATTCTGAGTATAATAG+TGG | + | chr3_3:84658359-84658378 | Msa0479640:intron | 20.0% |
| !! | ATAAATATATTCTAGGTCTA+GGG | - | chr3_3:84658500-84658519 | None:intergenic | 20.0% |
| !! | AAATAACCAAACAAAAAACT+GGG | - | chr3_3:84658527-84658546 | None:intergenic | 20.0% |
| !!! | ATTTTCATTCTAGATTACTT+AGG | + | chr3_3:84658619-84658638 | Msa0479640:intron | 20.0% |
| !!! | TCTTTAGAAAATTCAACATT+TGG | - | chr3_3:84659235-84659254 | None:intergenic | 20.0% |
| !!! | AAATGTTGAATTTTCTAAAG+AGG | + | chr3_3:84659234-84659253 | Msa0479640:CDS | 20.0% |
| !! | TTTGAGAAGTTTATTCAAAA+TGG | + | chr3_3:84660175-84660194 | Msa0479640:intron | 20.0% |
| !! | TTTACAGATAATGTATTCTT+AGG | + | chr3_3:84660516-84660535 | Msa0479640:intron | 20.0% |
| !! | TTACATAGTTTAAACATCTT+AGG | + | chr3_3:84660703-84660722 | Msa0479640:intron | 20.0% |
| !! | AAGTGTTTCATGTAATAAAA+AGG | + | chr3_3:84660808-84660827 | Msa0479640:intron | 20.0% |
| !!! | TTTCTTACTAAAGAACTTTT+AGG | - | chr3_3:84661078-84661097 | None:intergenic | 20.0% |
| !! | TAAAAGTTCTTTAGTAAGAA+AGG | + | chr3_3:84661077-84661096 | Msa0479640:intron | 20.0% |
| !! | AAATGTCATTAAAATCTACA+GGG | - | chr3_3:84661756-84661775 | None:intergenic | 20.0% |
| !! | AAAATGTCATTAAAATCTAC+AGG | - | chr3_3:84661757-84661776 | None:intergenic | 20.0% |
| !! | AAAGAAATGTTAAAGAAGTA+TGG | - | chr3_3:84661878-84661897 | None:intergenic | 20.0% |
| ! | CGGAATTTATAGTTGTTAAT+GGG | - | chr3_3:84657110-84657129 | None:intergenic | 25.0% |
| ! | ACGGAATTTATAGTTGTTAA+TGG | - | chr3_3:84657111-84657130 | None:intergenic | 25.0% |
| !! | ATATATCCCTTGTTTATTTG+TGG | + | chr3_3:84657893-84657912 | Msa0479640:intron | 25.0% |
| ! | TTCGAATATTTAGATGAGAA+AGG | + | chr3_3:84657939-84657958 | Msa0479640:intron | 25.0% |
| ! | TCGAATATTTAGATGAGAAA+GGG | + | chr3_3:84657940-84657959 | Msa0479640:intron | 25.0% |
| ! | CATAAATATATTCTAGGTCT+AGG | - | chr3_3:84658501-84658520 | None:intergenic | 25.0% |
| ! | GGGATACATAAATATATTCT+AGG | - | chr3_3:84658507-84658526 | None:intergenic | 25.0% |
| ! | GAAATAACCAAACAAAAAAC+TGG | - | chr3_3:84658528-84658547 | None:intergenic | 25.0% |
| !! | TGTTTGGTTATTTCATCAAT+TGG | + | chr3_3:84658534-84658553 | Msa0479640:intron | 25.0% |
| !! | ATTTATGATTTGCAAACAAG+AGG | - | chr3_3:84658599-84658618 | None:intergenic | 25.0% |
| ! | TAGATTACTTAGGTTCTTTA+AGG | + | chr3_3:84658629-84658648 | Msa0479640:intron | 25.0% |
| ! | GTTTATTTATGACTAGCAAA+TGG | - | chr3_3:84658823-84658842 | None:intergenic | 25.0% |
| !! | TCTACTTGATGATTAAATTC+AGG | + | chr3_3:84658989-84659008 | Msa0479640:intron | 25.0% |
| !! | AGAAATTTTCAGAAGGAAAA+GGG | + | chr3_3:84659087-84659106 | Msa0479640:intron | 25.0% |
| !! | TGAATTATATTAGGTGCTTT+TGG | + | chr3_3:84659798-84659817 | Msa0479640:intron | 25.0% |
| ! | ATAAATGTGTACACAAATGT+TGG | - | chr3_3:84659889-84659908 | None:intergenic | 25.0% |
| !! | GTTTTATATCAACTGCTTAA+TGG | + | chr3_3:84660197-84660216 | Msa0479640:intron | 25.0% |
| !! | AACTTTAGAGAAATCCTAAT+TGG | + | chr3_3:84660351-84660370 | Msa0479640:intron | 25.0% |
| !!! | TAAGACAACTTTTGTTTGAA+TGG | + | chr3_3:84660592-84660611 | Msa0479640:intron | 25.0% |
| ! | TGTTTAAACTATGTAACTTG+TGG | - | chr3_3:84660699-84660718 | None:intergenic | 25.0% |
| ! | AGGTCAAATGTTAAAAAAGA+TGG | + | chr3_3:84660723-84660742 | Msa0479640:intron | 25.0% |
| ! | AGATGTAAACATTTGATTCA+AGG | + | chr3_3:84660758-84660777 | Msa0479640:intron | 25.0% |
| ! | TTTATTACATGAAACACTTG+AGG | - | chr3_3:84660807-84660826 | None:intergenic | 25.0% |
| ! | AATGTCATTAAAATCTACAG+GGG | - | chr3_3:84661755-84661774 | None:intergenic | 25.0% |
| !! | TCAAAGGCCAAATTTTTAAA+AGG | + | chr3_3:84661817-84661836 | Msa0479640:CDS | 25.0% |
| !!! | CAAAGGCCAAATTTTTAAAA+GGG | + | chr3_3:84661818-84661837 | Msa0479640:CDS | 25.0% |
| !!! | AAAGGCCAAATTTTTAAAAG+GGG | + | chr3_3:84661819-84661838 | Msa0479640:CDS | 25.0% |
| !!! | CAATACCCCTTTTAAAAATT+TGG | - | chr3_3:84661827-84661846 | None:intergenic | 25.0% |
| ATGAAGTTCGAAAGTGAAAT+TGG | - | chr3_3:84657067-84657086 | None:intergenic | 30.0% | |
| TTAATGGGAGAGAAGTAAAA+TGG | - | chr3_3:84657095-84657114 | None:intergenic | 30.0% | |
| ATCATCGAAGAAAGTAGAAA+CGG | - | chr3_3:84657150-84657169 | None:intergenic | 30.0% | |
| GTAGTAATTAGAGAACTTGT+AGG | - | chr3_3:84657419-84657438 | None:intergenic | 30.0% | |
| AACCAAAATCCATGTTTATG+AGG | - | chr3_3:84657544-84657563 | None:intergenic | 30.0% | |
| !! | TCATAAACATGGATTTTGGT+TGG | + | chr3_3:84657543-84657562 | Msa0479640:intron | 30.0% |
| GTGATGAGTTAACTAATAGA+AGG | - | chr3_3:84657657-84657676 | None:intergenic | 30.0% | |
| CAGAGATCCATTAATATCAA+TGG | + | chr3_3:84657681-84657700 | Msa0479640:intron | 30.0% | |
| ! | CTTTTGGCCATTGATATTAA+TGG | - | chr3_3:84657691-84657710 | None:intergenic | 30.0% |
| AAATTGTGAAGGACCAAATT+GGG | - | chr3_3:84657769-84657788 | None:intergenic | 30.0% | |
| AAAATTGTGAAGGACCAAAT+TGG | - | chr3_3:84657770-84657789 | None:intergenic | 30.0% | |
| AAATCCAGATCATTCAATCT+TGG | + | chr3_3:84657869-84657888 | Msa0479640:intron | 30.0% | |
| TATTCCAAGATTGAATGATC+TGG | - | chr3_3:84657876-84657895 | None:intergenic | 30.0% | |
| AACTGACCACAAATAAACAA+GGG | - | chr3_3:84657902-84657921 | None:intergenic | 30.0% | |
| TCATATATTGCATTTGCAAG+AGG | + | chr3_3:84658033-84658052 | Msa0479640:intron | 30.0% | |
| TCATATATTGCATTTGCAAG+AGG | + | chr3_3:84658033-84658052 | Msa0479640:intron | 30.0% | |
| TTTAAATGATGCACCCAAAT+TGG | + | chr3_3:84658205-84658224 | Msa0479640:intron | 30.0% | |
| TTTGAGAACTACCATTACTT+AGG | + | chr3_3:84658304-84658323 | Msa0479640:intron | 30.0% | |
| ACCATTACTTAGGACATTTA+AGG | + | chr3_3:84658314-84658333 | Msa0479640:intron | 30.0% | |
| !! | TACTTTTCGAACAAGTATTG+TGG | - | chr3_3:84658439-84658458 | None:intergenic | 30.0% |
| !!! | ATGTATCCCAGTTTTTTGTT+TGG | + | chr3_3:84658518-84658537 | Msa0479640:intron | 30.0% |
| GCTCAACTACAAATTAAGAA+AGG | - | chr3_3:84658669-84658688 | None:intergenic | 30.0% | |
| ! | TAATTTGTAGTTGAGCATTG+TGG | + | chr3_3:84658673-84658692 | Msa0479640:intron | 30.0% |
| TCTTCATAAACTATATCCAG+AGG | - | chr3_3:84658797-84658816 | None:intergenic | 30.0% | |
| AAATAACATCTTAGAGCAAG+TGG | - | chr3_3:84658868-84658887 | None:intergenic | 30.0% | |
| TATCTACTGTACAATTATGC+AGG | - | chr3_3:84658910-84658929 | None:intergenic | 30.0% | |
| ! | CAGAAATTTTCAGAAGGAAA+AGG | + | chr3_3:84659086-84659105 | Msa0479640:intron | 30.0% |
| TAGAAAATTCAACATTTGGC+AGG | - | chr3_3:84659231-84659250 | None:intergenic | 30.0% | |
| ! | GAATCTGATGATGAACTTAA+TGG | + | chr3_3:84659277-84659296 | Msa0479640:CDS | 30.0% |
| ATTGTACACAGATTAGACAA+AGG | + | chr3_3:84659370-84659389 | Msa0479640:CDS | 30.0% | |
| TATCAAGGCATACAAATACT+GGG | - | chr3_3:84659520-84659539 | None:intergenic | 30.0% | |
| ATATCAAGGCATACAAATAC+TGG | - | chr3_3:84659521-84659540 | None:intergenic | 30.0% | |
| TATTTGTATGCCTTGATATC+AGG | + | chr3_3:84659522-84659541 | Msa0479640:intron | 30.0% | |
| CCTACAGGTTAAAAGTTAAA+TGG | - | chr3_3:84659939-84659958 | None:intergenic | 30.0% | |
| !! | CCATTTAACTTTTAACCTGT+AGG | + | chr3_3:84659936-84659955 | Msa0479640:intron | 30.0% |
| TTTATAAGCTAATGACCTAC+AGG | - | chr3_3:84659954-84659973 | None:intergenic | 30.0% | |
| !! | TTTTAAGTGAGTGCAAACTA+TGG | - | chr3_3:84660005-84660024 | None:intergenic | 30.0% |
| ! | AAAGTTGATTACTAACTGTC+AGG | + | chr3_3:84660235-84660254 | Msa0479640:intron | 30.0% |
| AAAGTAATTGAGATACTTGC+TGG | + | chr3_3:84660261-84660280 | Msa0479640:CDS | 30.0% | |
| AAGTAATTGAGATACTTGCT+GGG | + | chr3_3:84660262-84660281 | Msa0479640:CDS | 30.0% | |
| ACAACAAGATTATGCCAATT+AGG | - | chr3_3:84660368-84660387 | None:intergenic | 30.0% | |
| TTGTAAGTGAGAGAACTAAA+GGG | + | chr3_3:84660384-84660403 | Msa0479640:intron | 30.0% | |
| ACATTGCATAGATGTACTAA+CGG | + | chr3_3:84660458-84660477 | Msa0479640:intron | 30.0% | |
| ACAGATAATGTATTCTTAGG+TGG | + | chr3_3:84660519-84660538 | Msa0479640:intron | 30.0% | |
| AAGAAAAAACCCTAGCTTAA+AGG | + | chr3_3:84660650-84660669 | Msa0479640:intron | 30.0% | |
| ! | CAACTTTTACCTTTAAGCTA+GGG | - | chr3_3:84660662-84660681 | None:intergenic | 30.0% |
| ! | ATGTAACTTGTGGTATTGTA+TGG | - | chr3_3:84660689-84660708 | None:intergenic | 30.0% |
| TAAAAAAGATGGAGAAACAG+AGG | + | chr3_3:84660734-84660753 | Msa0479640:intron | 30.0% | |
| AAAAAAGATGGAGAAACAGA+GGG | + | chr3_3:84660735-84660754 | Msa0479640:intron | 30.0% | |
| GTAAACATTTGATTCAAGGA+AGG | + | chr3_3:84660762-84660781 | Msa0479640:intron | 30.0% | |
| GAATGAGTGAAAATACTACA+CGG | + | chr3_3:84660953-84660972 | Msa0479640:intron | 30.0% | |
| AATGAGTGAAAATACTACAC+GGG | + | chr3_3:84660954-84660973 | Msa0479640:intron | 30.0% | |
| TTAGCATTCAAGCAATAGTT+GGG | + | chr3_3:84660992-84661011 | Msa0479640:intron | 30.0% | |
| TGGGTCTATTGTGTAAAAAT+TGG | + | chr3_3:84661011-84661030 | Msa0479640:intron | 30.0% | |
| AAGAAAGGTAGATTAGATCA+AGG | + | chr3_3:84661092-84661111 | Msa0479640:intron | 30.0% | |
| TAGGCTTTACTATATTACAG+TGG | - | chr3_3:84661359-84661378 | None:intergenic | 30.0% | |
| ATAACTTCGTAGCTAAACTT+TGG | + | chr3_3:84661616-84661635 | Msa0479640:intron | 30.0% | |
| ! | ATGACAATTGATAGCACTAT+TGG | + | chr3_3:84661662-84661681 | Msa0479640:intron | 30.0% |
| ! | AATTGATAGCACTATTGGTT+TGG | + | chr3_3:84661667-84661686 | Msa0479640:intron | 30.0% |
| ATGTCATTAAAATCTACAGG+GGG | - | chr3_3:84661754-84661773 | None:intergenic | 30.0% | |
| !! | TGAAAGTATTTCTCACTCAA+AGG | + | chr3_3:84661801-84661820 | Msa0479640:CDS | 30.0% |
| ! | GTTAAAGAAGTATGGTAAGA+AGG | - | chr3_3:84661870-84661889 | None:intergenic | 30.0% |
| ! | AAGTTTTCATTTCAAAGCCG+CGG | + | chr3_3:84656953-84656972 | Msa0479640:five_prime_UTR | 35.0% |
| ! | TTGGAATGCTTTTGTTGCTA+TGG | - | chr3_3:84657048-84657067 | None:intergenic | 35.0% |
| TTCGATGATTCAAACTCCAA+AGG | + | chr3_3:84657161-84657180 | Msa0479640:CDS | 35.0% | |
| !!! | ATTCGATTTTGGTTCTCCTT+TGG | - | chr3_3:84657180-84657199 | None:intergenic | 35.0% |
| GAAAATTGAGACTCGATAGT+TGG | + | chr3_3:84657255-84657274 | Msa0479640:CDS | 35.0% | |
| AGACTACCTTATCAACAACA+CGG | - | chr3_3:84657358-84657377 | None:intergenic | 35.0% | |
| CAAATTCGGAACAGTTGAAA+TGG | - | chr3_3:84657394-84657413 | None:intergenic | 35.0% | |
| AGAACTTGTAGGCACAAATT+CGG | - | chr3_3:84657408-84657427 | None:intergenic | 35.0% | |
| AAATCCATGTTTATGAGGCT+GGG | - | chr3_3:84657539-84657558 | None:intergenic | 35.0% | |
| AAAATCCATGTTTATGAGGC+TGG | - | chr3_3:84657540-84657559 | None:intergenic | 35.0% | |
| ! | AGCCTCATAAACATGGATTT+TGG | + | chr3_3:84657539-84657558 | Msa0479640:intron | 35.0% |
| !!! | AACATGGATTTTGGTTGGTT+AGG | + | chr3_3:84657548-84657567 | Msa0479640:intron | 35.0% |
| ! | TTTAGAGTGAAGACCCAATT+TGG | + | chr3_3:84657753-84657772 | Msa0479640:intron | 35.0% |
| ! | TCCTTCACAATTTTATACCG+AGG | + | chr3_3:84657776-84657795 | Msa0479640:intron | 35.0% |
| TCCTCGGTATAAAATTGTGA+AGG | - | chr3_3:84657780-84657799 | None:intergenic | 35.0% | |
| CCTCTGTTTATAATGAGTCA+GGG | - | chr3_3:84657812-84657831 | None:intergenic | 35.0% | |
| CCTGACTCATTATAAACAGA+GGG | + | chr3_3:84657810-84657829 | Msa0479640:intron | 35.0% | |
| CTCATTATAAACAGAGGGAT+TGG | + | chr3_3:84657815-84657834 | Msa0479640:intron | 35.0% | |
| GAACTGACCACAAATAAACA+AGG | - | chr3_3:84657903-84657922 | None:intergenic | 35.0% | |
| ! | TATAGCTCTTGTTTGAGTCT+AGG | + | chr3_3:84657983-84658002 | Msa0479640:intron | 35.0% |
| ! | ATAGCTCTTGTTTGAGTCTA+GGG | + | chr3_3:84657984-84658003 | Msa0479640:intron | 35.0% |
| TAACTCCATGACTTGAATTG+TGG | + | chr3_3:84658057-84658076 | Msa0479640:intron | 35.0% | |
| AACTCCATGACTTGAATTGT+GGG | + | chr3_3:84658058-84658077 | Msa0479640:intron | 35.0% | |
| GAAGTCATAGATTCAAGTCA+TGG | - | chr3_3:84658125-84658144 | None:intergenic | 35.0% | |
| CAAGGAAAGACTTCCAATTT+GGG | - | chr3_3:84658221-84658240 | None:intergenic | 35.0% | |
| !! | ACTAGGAGATTATTTCTGCA+AGG | - | chr3_3:84658239-84658258 | None:intergenic | 35.0% |
| TTACAGATGTAGTCTCAACT+AGG | - | chr3_3:84658256-84658275 | None:intergenic | 35.0% | |
| GCCTTAAATGTCCTAAGTAA+TGG | - | chr3_3:84658318-84658337 | None:intergenic | 35.0% | |
| TTTCTTTCAATGTCAGAGCT+GGG | + | chr3_3:84658711-84658730 | Msa0479640:CDS | 35.0% | |
| TGAGATCAAATGTACGATTG+CGG | + | chr3_3:84658736-84658755 | Msa0479640:CDS | 35.0% | |
| !! | ATATCCAGAGGTATGTTTTC+CGG | - | chr3_3:84658785-84658804 | None:intergenic | 35.0% |
| CATAAATAAACCTGCTCACA+TGG | + | chr3_3:84658832-84658851 | Msa0479640:CDS | 35.0% | |
| !!! | AGATAGTGCGACACTTTTTT+TGG | + | chr3_3:84658925-84658944 | Msa0479640:intron | 35.0% |
| ! | CCTTCTGAAAATTTCTGACA+TGG | - | chr3_3:84659083-84659102 | None:intergenic | 35.0% |
| ! | CCATGTCAGAAATTTTCAGA+AGG | + | chr3_3:84659080-84659099 | Msa0479640:intron | 35.0% |
| CATTATATGCTCTTCAACCT+AGG | + | chr3_3:84659141-84659160 | Msa0479640:intron | 35.0% | |
| GTTAGATTCTAGATTGTCTG+TGG | + | chr3_3:84659330-84659349 | Msa0479640:CDS | 35.0% | |
| GAATGTTCATCCTGATATCA+AGG | - | chr3_3:84659535-84659554 | None:intergenic | 35.0% | |
| AGTTGAAAATCCATTCTGTG+TGG | + | chr3_3:84659912-84659931 | Msa0479640:intron | 35.0% | |
| ! | AGTAATTGAGATACTTGCTG+GGG | + | chr3_3:84660263-84660282 | Msa0479640:CDS | 35.0% |
| GTTGTAAGTGAGAGAACTAA+AGG | + | chr3_3:84660383-84660402 | Msa0479640:intron | 35.0% | |
| TAGTACATCTATGCAATGTC+CGG | - | chr3_3:84660457-84660476 | None:intergenic | 35.0% | |
| !!! | AGCTAGGGTTTTTTCTTCTT+TGG | - | chr3_3:84660647-84660666 | None:intergenic | 35.0% |
| ! | CCAACTTTTACCTTTAAGCT+AGG | - | chr3_3:84660663-84660682 | None:intergenic | 35.0% |
| CCTAGCTTAAAGGTAAAAGT+TGG | + | chr3_3:84660660-84660679 | Msa0479640:intron | 35.0% | |
| AACATTTGATTCAAGGAAGG+TGG | + | chr3_3:84660765-84660784 | Msa0479640:intron | 35.0% | |
| TTGATCGATAAAATGTTCCC+TGG | - | chr3_3:84660845-84660864 | None:intergenic | 35.0% | |
| GTATGAGAATGAGTGTTTGA+TGG | + | chr3_3:84660877-84660896 | Msa0479640:intron | 35.0% | |
| ATACTACACGGGATATGATT+AGG | + | chr3_3:84660965-84660984 | Msa0479640:intron | 35.0% | |
| GTTAGCATTCAAGCAATAGT+TGG | + | chr3_3:84660991-84661010 | Msa0479640:intron | 35.0% | |
| ! | TTTTGCCTTTAGTGATTGAG+TGG | - | chr3_3:84661119-84661138 | None:intergenic | 35.0% |
| CAATCACTAAAGGCAAAAGA+AGG | + | chr3_3:84661121-84661140 | Msa0479640:intron | 35.0% | |
| AGATTTAGAGGACAATGCTT+TGG | + | chr3_3:84661184-84661203 | Msa0479640:intron | 35.0% | |
| AACATTTCGCTATGCAAACT+CGG | - | chr3_3:84661525-84661544 | None:intergenic | 35.0% | |
| AAACAGTTTCTGAGCTAGAT+AGG | + | chr3_3:84661547-84661566 | Msa0479640:CDS | 35.0% | |
| ! | GGGTATTGTAATTTGTAAGC+CGG | + | chr3_3:84661839-84661858 | Msa0479640:exon | 35.0% |
| ! | TTGTAATTTGTAAGCCGGTT+TGG | + | chr3_3:84661844-84661863 | Msa0479640:exon | 35.0% |
| TTATCGCTTAACACCTCATG+TGG | + | chr3_3:84657008-84657027 | Msa0479640:CDS | 40.0% | |
| ! | AACACCTCATGTGGATTTTG+CGG | + | chr3_3:84657017-84657036 | Msa0479640:CDS | 40.0% |
| ! | AGTAGAAACGGATTTCGCAA+TGG | - | chr3_3:84657138-84657157 | None:intergenic | 40.0% |
| GAACCAAAATCGAATTACGC+CGG | + | chr3_3:84657185-84657204 | Msa0479640:CDS | 40.0% | |
| TGGATTTCTTCTCGCATCAA+TGG | + | chr3_3:84657275-84657294 | Msa0479640:CDS | 40.0% | |
| GTCCAGTCAAGTATTAAAGC+TGG | + | chr3_3:84657314-84657333 | Msa0479640:CDS | 40.0% | |
| ! | GTCCAGCTTTAATACTTGAC+TGG | - | chr3_3:84657319-84657338 | None:intergenic | 40.0% |
| CCTCCTTTCTCTTCTAAATG+CGG | + | chr3_3:84657509-84657528 | Msa0479640:intron | 40.0% | |
| CTCCTTTCTCTTCTAAATGC+GGG | + | chr3_3:84657510-84657529 | Msa0479640:intron | 40.0% | |
| TACCCGCATTTAGAAGAGAA+AGG | - | chr3_3:84657515-84657534 | None:intergenic | 40.0% | |
| GTTGGTTAGGAAGATCTAGA+GGG | + | chr3_3:84657561-84657580 | Msa0479640:intron | 40.0% | |
| GCATATCATCTGGAGAAGAA+GGG | + | chr3_3:84657583-84657602 | Msa0479640:intron | 40.0% | |
| !!! | GGCTGGTTTTAATGTGTATG+TGG | + | chr3_3:84657631-84657650 | Msa0479640:intron | 40.0% |
| CCCTGACTCATTATAAACAG+AGG | + | chr3_3:84657809-84657828 | Msa0479640:intron | 40.0% | |
| CCCTCTGTTTATAATGAGTC+AGG | - | chr3_3:84657813-84657832 | None:intergenic | 40.0% | |
| TTTAGATGAGAAAGGGCAAC+AGG | + | chr3_3:84657947-84657966 | Msa0479640:intron | 40.0% | |
| ACTGTACAATAGACCCACAA+TGG | - | chr3_3:84658014-84658033 | None:intergenic | 40.0% | |
| TAGACCCACAATTCAAGTCA+TGG | - | chr3_3:84658065-84658084 | None:intergenic | 40.0% | |
| AAGAATGGAAGTCTTGCAGT+TGG | - | chr3_3:84658180-84658199 | None:intergenic | 40.0% | |
| GCAAGGAAAGACTTCCAATT+TGG | - | chr3_3:84658222-84658241 | None:intergenic | 40.0% | |
| TGAGACTACATCTGTAATGC+TGG | + | chr3_3:84658259-84658278 | Msa0479640:intron | 40.0% | |
| AGTCACTAACTGCAACAAGA+TGG | - | chr3_3:84658285-84658304 | None:intergenic | 40.0% | |
| ! | TAGATCAAGTGTTGTGCTGA+AGG | + | chr3_3:84658395-84658414 | Msa0479640:intron | 40.0% |
| !! | GGCATGCTTTAGAATCATCT+TGG | - | chr3_3:84658479-84658498 | None:intergenic | 40.0% |
| GTTTCTTTCAATGTCAGAGC+TGG | + | chr3_3:84658710-84658729 | Msa0479640:CDS | 40.0% | |
| TTCTTTCAATGTCAGAGCTG+GGG | + | chr3_3:84658712-84658731 | Msa0479640:CDS | 40.0% | |
| ACATCTTAGAGCAAGTGGTT+CGG | - | chr3_3:84658863-84658882 | None:intergenic | 40.0% | |
| CTACTGTACAATTATGCAGG+TGG | - | chr3_3:84658907-84658926 | None:intergenic | 40.0% | |
| GCACTACAGAATAAAGTGGT+TGG | - | chr3_3:84659028-84659047 | None:intergenic | 40.0% | |
| CCTAGCACTACAGAATAAAG+TGG | - | chr3_3:84659032-84659051 | None:intergenic | 40.0% | |
| CCACTTTATTCTGTAGTGCT+AGG | + | chr3_3:84659029-84659048 | Msa0479640:intron | 40.0% | |
| CTAATCTGTGTACAATCCCT+GGG | - | chr3_3:84659366-84659385 | None:intergenic | 40.0% | |
| TCTAATCTGTGTACAATCCC+TGG | - | chr3_3:84659367-84659386 | None:intergenic | 40.0% | |
| ATCATACGAAGCCGGTTATT+AGG | - | chr3_3:84659676-84659695 | None:intergenic | 40.0% | |
| GTTAAATGGACCACACAGAA+TGG | - | chr3_3:84659925-84659944 | None:intergenic | 40.0% | |
| ! | GTAATTGAGATACTTGCTGG+GGG | + | chr3_3:84660264-84660283 | Msa0479640:CDS | 40.0% |
| TTGAGTGGAAGTTGGAAACT+GGG | + | chr3_3:84660301-84660320 | Msa0479640:CDS | 40.0% | |
| TTTACCATCGGAGTAAAACG+TGG | + | chr3_3:84660417-84660436 | Msa0479640:intron | 40.0% | |
| AAAACGTGGCCAAATTTCCA+TGG | + | chr3_3:84660431-84660450 | Msa0479640:intron | 40.0% | |
| ! | AAAAGCATGCTGCAAAGTGT+TGG | - | chr3_3:84660498-84660517 | None:intergenic | 40.0% |
| GAGAGTCGAGAGGAAATAAA+TGG | + | chr3_3:84660541-84660560 | Msa0479640:intron | 40.0% | |
| GTCGAGAGGAAATAAATGGA+AGG | + | chr3_3:84660545-84660564 | Msa0479640:intron | 40.0% | |
| TAAATGGAAGGTTAGAGACG+TGG | + | chr3_3:84660557-84660576 | Msa0479640:intron | 40.0% | |
| TTCAAGGAAGGTGGTTGAAA+TGG | + | chr3_3:84660774-84660793 | Msa0479640:intron | 40.0% | |
| ! | AAAAAGGTACAACTCAAGCC+AGG | + | chr3_3:84660824-84660843 | Msa0479640:intron | 40.0% |
| ! | AAAAGGTACAACTCAAGCCA+GGG | + | chr3_3:84660825-84660844 | Msa0479640:intron | 40.0% |
| GAATCTCAACCTAGATCGTT+TGG | + | chr3_3:84661036-84661055 | Msa0479640:intron | 40.0% | |
| AAGGACCACTCAATCACTAA+AGG | + | chr3_3:84661111-84661130 | Msa0479640:intron | 40.0% | |
| !! | CAAGTCTTATTCCACTAGGT+GGG | - | chr3_3:84661265-84661284 | None:intergenic | 40.0% |
| !! | AGACCAAGTCTTATTCCACT+AGG | - | chr3_3:84661269-84661288 | None:intergenic | 40.0% |
| TAGGTGATGAGGTATATGGA+GGG | + | chr3_3:84661457-84661476 | Msa0479640:CDS | 40.0% | |
| CTCACTAGATAGAACTTCCG+CGG | - | chr3_3:84656973-84656992 | None:intergenic | 45.0% | |
| AACACCGCAAAATCCACATG+AGG | - | chr3_3:84657024-84657043 | None:intergenic | 45.0% | |
| ! | AGAAACGGATTTCGCAATGG+AGG | - | chr3_3:84657135-84657154 | None:intergenic | 45.0% |
| ! | GAAGAAATCGTCGACTACGA+CGG | + | chr3_3:84657218-84657237 | Msa0479640:CDS | 45.0% |
| TACGACGGTGGAATCAAATC+TGG | + | chr3_3:84657233-84657252 | Msa0479640:CDS | 45.0% | |
| ! | CAATGGCCGTGTTGTTGATA+AGG | + | chr3_3:84657349-84657368 | Msa0479640:CDS | 45.0% |
| CCGCATTTAGAAGAGAAAGG+AGG | - | chr3_3:84657512-84657531 | None:intergenic | 45.0% | |
| GTAACCCAGCCTCATAAACA+TGG | + | chr3_3:84657532-84657551 | Msa0479640:intron | 45.0% | |
| ! | GGTTGGTTAGGAAGATCTAG+AGG | + | chr3_3:84657560-84657579 | Msa0479640:intron | 45.0% |
| ! | GATCTAGAGGGCATATCATC+TGG | + | chr3_3:84657573-84657592 | Msa0479640:intron | 45.0% |
| GGCATATCATCTGGAGAAGA+AGG | + | chr3_3:84657582-84657601 | Msa0479640:intron | 45.0% | |
| CTGGAGAAGAAGGGTTAAGT+TGG | + | chr3_3:84657592-84657611 | Msa0479640:intron | 45.0% | |
| !! | TTAAGTTGGCATGCCAACCT+AGG | + | chr3_3:84657606-84657625 | Msa0479640:intron | 45.0% |
| ACATTAAAACCAGCCTGCCT+AGG | - | chr3_3:84657626-84657645 | None:intergenic | 45.0% | |
| ! | GTCAGGGACTAATTTGTCCT+CGG | - | chr3_3:84657796-84657815 | None:intergenic | 45.0% |
| AGTTGTGCAGTGTGCACTAA+AGG | - | chr3_3:84657847-84657866 | None:intergenic | 45.0% | |
| AACAAGAGCTATACAGCACC+AGG | - | chr3_3:84657976-84657995 | None:intergenic | 45.0% | |
| ! | AGTCTAGGGCAAACCATTGT+GGG | + | chr3_3:84657998-84658017 | Msa0479640:intron | 45.0% |
| CTTGCAGTTGGCAAAGTGAT+AGG | - | chr3_3:84658168-84658187 | None:intergenic | 45.0% | |
| CATTGTGGTGATACTTGAGC+AGG | + | chr3_3:84658688-84658707 | Msa0479640:CDS | 45.0% | |
| TTCGGAATTACCATGTGAGC+AGG | - | chr3_3:84658845-84658864 | None:intergenic | 45.0% | |
| ! | ACGTCTGGGACACTTGTAAA+TGG | + | chr3_3:84659187-84659206 | Msa0479640:CDS | 45.0% |
| CAACATTTGGCAGGTTGCAA+TGG | - | chr3_3:84659222-84659241 | None:intergenic | 45.0% | |
| TCCCAGTCAAGTTCTTCTGA+AGG | + | chr3_3:84659307-84659326 | Msa0479640:CDS | 45.0% | |
| CCCTTCAGAAGAACTTGACT+GGG | - | chr3_3:84659311-84659330 | None:intergenic | 45.0% | |
| CCCAGTCAAGTTCTTCTGAA+GGG | + | chr3_3:84659308-84659327 | Msa0479640:CDS | 45.0% | |
| ACCCTTCAGAAGAACTTGAC+TGG | - | chr3_3:84659312-84659331 | None:intergenic | 45.0% | |
| ! | AGATTAGACAAAGGCACGAG+TGG | + | chr3_3:84659379-84659398 | Msa0479640:CDS | 45.0% |
| ! | GATTAGACAAAGGCACGAGT+GGG | + | chr3_3:84659380-84659399 | Msa0479640:CDS | 45.0% |
| TGGGTTACTAGTTGTCGCTA+AGG | + | chr3_3:84659399-84659418 | Msa0479640:CDS | 45.0% | |
| TCAAGCTACGCACTATCAAG+AGG | + | chr3_3:84659578-84659597 | Msa0479640:CDS | 45.0% | |
| CAAGCTACGCACTATCAAGA+GGG | + | chr3_3:84659579-84659598 | Msa0479640:CDS | 45.0% | |
| TTATTAGGATCACGGCCAAC+AGG | - | chr3_3:84659661-84659680 | None:intergenic | 45.0% | |
| TTGGCCGTGATCCTAATAAC+CGG | + | chr3_3:84659662-84659681 | Msa0479640:CDS | 45.0% | |
| GAAGCCGGTTATTAGGATCA+CGG | - | chr3_3:84659669-84659688 | None:intergenic | 45.0% | |
| TGCGGCTAGTAGGTGATTTA+TGG | + | chr3_3:84659735-84659754 | Msa0479640:intron | 45.0% | |
| TGAGTGCAAACTATGGAGCA+TGG | - | chr3_3:84659998-84660017 | None:intergenic | 45.0% | |
| !! | TGCATTGGTTGAGTGGAAGT+TGG | + | chr3_3:84660293-84660312 | Msa0479640:CDS | 45.0% |
| GTTGAGTGGAAGTTGGAAAC+TGG | + | chr3_3:84660300-84660319 | Msa0479640:CDS | 45.0% | |
| AATGTCCGGCCATGGAAATT+TGG | - | chr3_3:84660443-84660462 | None:intergenic | 45.0% | |
| AAGGAAGGTGGTTGAAATGG+AGG | + | chr3_3:84660777-84660796 | Msa0479640:intron | 45.0% | |
| AAGGTGGTTGAAATGGAGGA+GGG | + | chr3_3:84660781-84660800 | Msa0479640:intron | 45.0% | |
| CACACATGACCAAACGATCT+AGG | - | chr3_3:84661048-84661067 | None:intergenic | 45.0% | |
| CTAGATCGTTTGGTCATGTG+TGG | + | chr3_3:84661046-84661065 | Msa0479640:intron | 45.0% | |
| ATGTTGTCAATCCCACCTAG+TGG | + | chr3_3:84661251-84661270 | Msa0479640:intron | 45.0% | |
| !! | CCAAGTCTTATTCCACTAGG+TGG | - | chr3_3:84661266-84661285 | None:intergenic | 45.0% |
| CCACCTAGTGGAATAAGACT+TGG | + | chr3_3:84661263-84661282 | Msa0479640:intron | 45.0% | |
| TATTTGGGTGTACCTCTGCT+AGG | + | chr3_3:84661438-84661457 | Msa0479640:CDS | 45.0% | |
| TATACCTCATCACCTAGCAG+AGG | - | chr3_3:84661453-84661472 | None:intergenic | 45.0% | |
| CTGCTAGGTGATGAGGTATA+TGG | + | chr3_3:84661453-84661472 | Msa0479640:CDS | 45.0% | |
| CTAGGTGATGAGGTATATGG+AGG | + | chr3_3:84661456-84661475 | Msa0479640:CDS | 45.0% | |
| ATATGGAGGGACGAAAAGCA+TGG | + | chr3_3:84661470-84661489 | Msa0479640:CDS | 45.0% | |
| !! | GCATGGTCTTGTCATTGCTA+CGG | + | chr3_3:84661487-84661506 | Msa0479640:CDS | 45.0% |
| AGAGTCAAAGCATGAAGGCA+AGG | - | chr3_3:84661573-84661592 | None:intergenic | 45.0% | |
| TGCCTTCATGCTTTGACTCT+CGG | + | chr3_3:84661573-84661592 | Msa0479640:CDS | 45.0% | |
| ! | GGTTTGGTTCATTGTCGTGT+AGG | + | chr3_3:84661683-84661702 | Msa0479640:intron | 45.0% |
| TAGGTTTCAGCATCCTCACA+CGG | + | chr3_3:84661702-84661721 | Msa0479640:intron | 45.0% | |
| TTGAGCCAGCTTCGTAGAAT+TGG | + | chr3_3:84661775-84661794 | Msa0479640:CDS | 45.0% | |
| CACTACCAATTCTACGAAGC+TGG | - | chr3_3:84661783-84661802 | None:intergenic | 45.0% | |
| GTATGGTAAGAAGGCCAAAC+CGG | - | chr3_3:84661861-84661880 | None:intergenic | 45.0% | |
| !!! | ATATTACATTTTTAAAAAAT+TGG | + | chr3_3:84661918-84661937 | Msa0479640:three_prime_UTR | 5.0% |
| !!! | TATTACATTTTTAAAAAATT+GGG | + | chr3_3:84661919-84661938 | Msa0479640:three_prime_UTR | 5.0% |
| CGGATTTCGCAATGGAGGAA+CGG | - | chr3_3:84657130-84657149 | None:intergenic | 50.0% | |
| ! | ACGCCGGCGTAATTCGATTT+TGG | - | chr3_3:84657191-84657210 | None:intergenic | 50.0% |
| GCTGGACTCGTTCATGTCAA+TGG | + | chr3_3:84657332-84657351 | Msa0479640:CDS | 50.0% | |
| TAAAACCAGCCTGCCTAGGT+TGG | - | chr3_3:84657622-84657641 | None:intergenic | 50.0% | |
| ! | GAGTCTAGGGCAAACCATTG+TGG | + | chr3_3:84657997-84658016 | Msa0479640:intron | 50.0% |
| TGTGCCGGAAAACATACCTC+TGG | + | chr3_3:84658778-84658797 | Msa0479640:CDS | 50.0% | |
| ! | GTCTACGTTAGTCTCACTGC+CGG | + | chr3_3:84659601-84659620 | Msa0479640:CDS | 50.0% |
| ! | TCTACGTTAGTCTCACTGCC+GGG | + | chr3_3:84659602-84659621 | Msa0479640:CDS | 50.0% |
| AGAAACTGGAGTAGGTACCC+CGG | - | chr3_3:84659623-84659642 | None:intergenic | 50.0% | |
| ACACGTCCAGAAACTGGAGT+AGG | - | chr3_3:84659631-84659650 | None:intergenic | 50.0% | |
| ! | TCCAGTTTCTGGACGTGTTG+AGG | + | chr3_3:84659633-84659652 | Msa0479640:CDS | 50.0% |
| ACCTCAACACGTCCAGAAAC+TGG | - | chr3_3:84659637-84659656 | None:intergenic | 50.0% | |
| CTACAGCGATCATACGAAGC+CGG | - | chr3_3:84659684-84659703 | None:intergenic | 50.0% | |
| CTTCGTATGATCGCTGTAGC+TGG | + | chr3_3:84659685-84659704 | Msa0479640:CDS | 50.0% | |
| TTCTGTGAAAGCCCGTCATG+CGG | + | chr3_3:84659717-84659736 | Msa0479640:CDS | 50.0% | |
| ATCACCTACTAGCCGCATGA+CGG | - | chr3_3:84659732-84659751 | None:intergenic | 50.0% | |
| !! | GTAGCTGTGCATTGGTTGAG+TGG | + | chr3_3:84660286-84660305 | Msa0479640:CDS | 50.0% |
| ! | GGTGCACTGCTGTTTACCAT+CGG | + | chr3_3:84660405-84660424 | Msa0479640:intron | 50.0% |
| ! | TTGGCCACGTTTTACTCCGA+TGG | - | chr3_3:84660424-84660443 | None:intergenic | 50.0% |
| ATCTATGCAATGTCCGGCCA+TGG | - | chr3_3:84660451-84660470 | None:intergenic | 50.0% | |
| TTCTTAGGTGGAGAGTCGAG+AGG | + | chr3_3:84660531-84660550 | Msa0479640:intron | 50.0% | |
| GAAGGTGGTTGAAATGGAGG+AGG | + | chr3_3:84660780-84660799 | Msa0479640:intron | 50.0% | |
| GATCGTTTGGTCATGTGTGG+AGG | + | chr3_3:84661049-84661068 | Msa0479640:intron | 50.0% | |
| TGTACCTCTGCTAGGTGATG+AGG | + | chr3_3:84661446-84661465 | Msa0479640:CDS | 50.0% | |
| TGCAAACTCGGAGTTGTTCG+TGG | - | chr3_3:84661513-84661532 | None:intergenic | 50.0% | |
| GCCTTCATGCTTTGACTCTC+GGG | + | chr3_3:84661574-84661593 | Msa0479640:CDS | 50.0% | |
| ACCCGAGAGTCAAAGCATGA+AGG | - | chr3_3:84661578-84661597 | None:intergenic | 50.0% | |
| AGGTTTCAGCATCCTCACAC+GGG | + | chr3_3:84661703-84661722 | Msa0479640:intron | 50.0% | |
| AATCGAATTACGCCGGCGTG+CGG | + | chr3_3:84657192-84657211 | Msa0479640:CDS | 55.0% | |
| GATTTCTTCCAACCGCACGC+CGG | - | chr3_3:84657207-84657226 | None:intergenic | 55.0% | |
| ! | GAAATCGTCGACTACGACGG+TGG | + | chr3_3:84657221-84657240 | Msa0479640:CDS | 55.0% |
| AGAAAGGGCAACAGGCAACC+TGG | + | chr3_3:84657955-84657974 | Msa0479640:intron | 55.0% | |
| !! | AGGTGCTGGATGCACAACCT+AGG | - | chr3_3:84659161-84659180 | None:intergenic | 55.0% |
| TAGGTTGTGCATCCAGCACC+TGG | + | chr3_3:84659160-84659179 | Msa0479640:intron | 55.0% | |
| CAGCACCTGGCAATACGTCT+GGG | + | chr3_3:84659173-84659192 | Msa0479640:CDS | 55.0% | |
| AGTGTCCCAGACGTATTGCC+AGG | - | chr3_3:84659181-84659200 | None:intergenic | 55.0% | |
| TCTGTGGCATCAATTCGCCC+AGG | + | chr3_3:84659346-84659365 | Msa0479640:CDS | 55.0% | |
| CTGTGGCATCAATTCGCCCA+GGG | + | chr3_3:84659347-84659366 | Msa0479640:CDS | 55.0% | |
| ! | CTACGTTAGTCTCACTGCCG+GGG | + | chr3_3:84659603-84659622 | Msa0479640:CDS | 55.0% |
| ! | GGGGTACCTACTCCAGTTTC+TGG | + | chr3_3:84659622-84659641 | Msa0479640:CDS | 55.0% |
| GGACGTGTTGAGGTTCCTGT+TGG | + | chr3_3:84659643-84659662 | Msa0479640:CDS | 55.0% | |
| TCACCTACTAGCCGCATGAC+GGG | - | chr3_3:84659731-84659750 | None:intergenic | 55.0% | |
| CGTGGCCAAATTTCCATGGC+CGG | + | chr3_3:84660435-84660454 | Msa0479640:intron | 55.0% | |
| GGTTTCAGCATCCTCACACG+GGG | + | chr3_3:84661704-84661723 | Msa0479640:intron | 55.0% | |
| GTTTCAGCATCCTCACACGG+GGG | + | chr3_3:84661705-84661724 | Msa0479640:CDS | 55.0% | |
| GTTGGCATGCCAACCTAGGC+AGG | + | chr3_3:84657610-84657629 | Msa0479640:intron | 60.0% | |
| GCAGCAGTTGAGAGCTGTGC+CGG | + | chr3_3:84658763-84658782 | Msa0479640:CDS | 60.0% | |
| CCAGACGTATTGCCAGGTGC+TGG | - | chr3_3:84659175-84659194 | None:intergenic | 60.0% | |
| CCAGCACCTGGCAATACGTC+TGG | + | chr3_3:84659172-84659191 | Msa0479640:CDS | 60.0% | |
| AAGCCCGTCATGCGGCTAGT+AGG | + | chr3_3:84659725-84659744 | Msa0479640:CDS | 60.0% | |
| TGCTGGGGGTAGCTGTGCAT+TGG | + | chr3_3:84660278-84660297 | Msa0479640:CDS | 60.0% | |
| GGAAACTGGGCGCACTCATC+AGG | + | chr3_3:84660314-84660333 | Msa0479640:CDS | 60.0% | |
| GAATTACGCCGGCGTGCGGT+TGG | + | chr3_3:84657196-84657215 | Msa0479640:CDS | 65.0% | |
| GCATGCCAACCTAGGCAGGC+TGG | + | chr3_3:84657614-84657633 | Msa0479640:intron | 65.0% | |
| GCATCCTCACACGGGGGAGC+AGG | + | chr3_3:84661711-84661730 | Msa0479640:CDS | 70.0% | |
| TGCACCTGCTCCCCCGTGTG+AGG | - | chr3_3:84661718-84661737 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84656936 | 84662034 | 84656936 | ID=Msa0479640;Name=Msa0479640 |
| chr3_3 | mRNA | 84656936 | 84662034 | 84656936 | ID=Msa0479640-mRNA-1;Parent=Msa0479640;Name=Msa0479640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|0.83|0.85|1|1|1|7|185|465 |
| chr3_3 | exon | 84656936 | 84657370 | 84656936 | ID=Msa0479640-mRNA-1:exon:24064;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84658683 | 84658853 | 84658683 | ID=Msa0479640-mRNA-1:exon:24065;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84659163 | 84659420 | 84659163 | ID=Msa0479640-mRNA-1:exon:24066;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84659544 | 84659746 | 84659544 | ID=Msa0479640-mRNA-1:exon:24067;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84660257 | 84660335 | 84660257 | ID=Msa0479640-mRNA-1:exon:24068;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84661420 | 84661595 | 84661420 | ID=Msa0479640-mRNA-1:exon:24069;Parent=Msa0479640-mRNA-1 |
| chr3_3 | exon | 84661705 | 84662034 | 84661705 | ID=Msa0479640-mRNA-1:exon:24070;Parent=Msa0479640-mRNA-1 |
| chr3_3 | five_prime_UTR | 84656936 | 84657004 | 84656936 | ID=Msa0479640-mRNA-1:five_prime_utr;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84657005 | 84657370 | 84657005 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84658683 | 84658853 | 84658683 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84659163 | 84659420 | 84659163 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84659544 | 84659746 | 84659544 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84660257 | 84660335 | 84660257 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84661420 | 84661595 | 84661420 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | CDS | 84661705 | 84661849 | 84661705 | ID=Msa0479640-mRNA-1:cds;Parent=Msa0479640-mRNA-1 |
| chr3_3 | three_prime_UTR | 84661850 | 84662034 | 84661850 | ID=Msa0479640-mRNA-1:three_prime_utr;Parent=Msa0479640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
