AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420280 MtrunA17_Chr3g0119841 85.953 299 8 3 1 298 1 266 0.0 513
Msa0420280 MtrunA17_Chr1g0184911 51.538 130 62 1 164 293 130 258 5.78e-48 160
Msa0420280 MtrunA17_Chr7g0260531 39.500 200 89 3 94 293 80 247 2.33e-45 154
Msa0420280 MtrunA17_Chr1g0194531 31.047 277 137 9 22 292 16 244 1.30e-32 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420280 AT1G64680.1 66.914 269 51 2 30 298 20 250 1.27e-127 363
Msa0420280 AT1G64680.2 66.667 222 36 2 30 251 20 203 9.47e-99 289
Msa0420280 AT1G03055.1 31.985 272 133 5 8 279 32 251 5.90e-43 148
Msa0420280 AT4G01995.1 41.216 148 68 4 156 287 102 246 2.65e-28 110
Msa0420280 AT4G01995.3 41.216 148 68 4 156 287 71 215 4.37e-28 108
Msa0420280 AT1G03055.2 25.359 209 104 5 7 215 31 187 7.58e-12 63.9

Find 67 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGGGTTGGTTGGATATT+TGG 0.122908 3_2:+68733091 Msa0420280:CDS
TCTACCTGCATTTCTTTATA+TGG 0.188356 3_2:-68735048 None:intergenic
TTTGCTCTTGGAGCATATTT+TGG 0.218844 3_2:-68732889 None:intergenic
GTTATAGAAGTGGAGATAAA+TGG 0.222746 3_2:+68735004 Msa0420280:CDS
GAAGGGTTGGTTGGATATTT+GGG 0.224300 3_2:+68733092 Msa0420280:CDS
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 3_2:+68733045 Msa0420280:CDS
ATGAGTTGTGATATGGTTTA+TGG 0.271373 3_2:+68735699 Msa0420280:CDS
ATACTTGGAATCATTGTTAA+TGG 0.282259 3_2:-68735529 None:intergenic
ATCATGAGCAGACACTTCTT+TGG 0.314162 3_2:+68735904 Msa0420280:exon
TTCTCATGATTTCTACTTTG+AGG 0.336451 3_2:+68735964 Msa0420280:three_prime_UTR
TTATAGAAGTGGAGATAAAT+GGG 0.344984 3_2:+68735005 Msa0420280:CDS
TCCTCCAGGTGCGCCTGCTC+AGG 0.352565 3_2:+68733218 Msa0420280:CDS
ATCAGCATAGCAAGGTTGTT+TGG 0.360336 3_2:-68735757 None:intergenic
CCTTTCTTCCACTGGCTAGT+TGG 0.368715 3_2:+68734180 Msa0420280:CDS
TTAGGACATATACTGGAGTT+TGG 0.369294 3_2:-68735875 None:intergenic
TCTGGTGAACCAGCTCCTTT+AGG 0.371810 3_2:+68732952 Msa0420280:CDS
CTTCAAATGAAGGCGGGGTT+TGG 0.384590 3_2:-68735722 None:intergenic
TGAAGACATGAGTTGTGATA+TGG 0.393524 3_2:+68735692 Msa0420280:CDS
TAAATTGATTAACCGGCCTT+TGG 0.403022 3_2:-68736163 None:intergenic
AACTCTGCAGCCCATCTTGT+TGG 0.428775 3_2:-68734138 None:intergenic
AGCAAGGTTGTTTGGAGACT+GGG 0.442350 3_2:-68735749 None:intergenic
TCTGCTCATGATTGTAGCTT+AGG 0.444862 3_2:-68735893 None:intergenic
TAGCAAGGTTGTTTGGAGAC+TGG 0.446056 3_2:-68735750 None:intergenic
TTGTAGCTTAGGACATATAC+TGG 0.446108 3_2:-68735882 None:intergenic
AGGATTGTTGAATTATCTAC+TGG 0.447527 3_2:+68733282 Msa0420280:CDS
GCAGTAGCACCATTTGCTCT+TGG 0.448463 3_2:-68732901 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 3_2:-68733045 None:intergenic
TCCACCTGAGCAGGCGCACC+TGG 0.454996 3_2:-68733222 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 3_2:+68734172 Msa0420280:CDS
CTTCTTTCTATGCTTCCTCC+AGG 0.466971 3_2:+68733204 Msa0420280:CDS
CAACACATCCACTGTTCTCC+AGG 0.477413 3_2:-68735444 None:intergenic
TTGTGACAATGTTTGTAAGA+AGG 0.478893 3_2:+68733311 Msa0420280:CDS
GAAGGAAAAGAAGGGTTGGT+TGG 0.480392 3_2:+68733083 Msa0420280:CDS
AATTATTTCCACCAACAAGA+TGG 0.484190 3_2:+68734127 Msa0420280:CDS
TCCAGGTGCGCCTGCTCAGG+TGG 0.485107 3_2:+68733221 Msa0420280:CDS
CATTTGCAGAGCCTGTAATA+GGG 0.488770 3_2:+68733046 Msa0420280:CDS
AAATATGCTCCAAGAGCAAA+TGG 0.490621 3_2:+68732892 Msa0420280:CDS
CCAACTAGCCAGTGGAAGAA+AGG 0.501151 3_2:-68734180 None:intergenic
GGTCGTCTTCAAATGAAGGC+GGG 0.508459 3_2:-68735728 None:intergenic
TATTGTAATATATTTGTCAA+AGG 0.519655 3_2:+68735996 Msa0420280:three_prime_UTR
TCTATAATATCCACCTGAGC+AGG 0.524418 3_2:-68733231 None:intergenic
ATTATTTCCACCAACAAGAT+GGG 0.524598 3_2:+68734128 Msa0420280:CDS
AGAAGAAGGAAAAGAAGGGT+TGG 0.529491 3_2:+68733079 Msa0420280:CDS
TCTGCAGCCCATCTTGTTGG+TGG 0.532193 3_2:-68734135 None:intergenic
AAAGGAGCTGGTTCACCAGA+TGG 0.553062 3_2:-68732949 None:intergenic
GTGTCCATATAAAGAAATGC+AGG 0.556167 3_2:+68735044 Msa0420280:CDS
ACTGGGTCGTCTTCAAATGA+AGG 0.561598 3_2:-68735732 None:intergenic
CTGGCTAGTTGGTCCTTCTG+AGG 0.564292 3_2:+68734191 Msa0420280:CDS
TGTGGAATAGCTGAACCATC+TGG 0.564729 3_2:+68732934 Msa0420280:CDS
AGTAACAAAATCACCTCAGA+AGG 0.568318 3_2:-68734204 None:intergenic
ATGGTGCTACTGCTATCATT+CGG 0.573828 3_2:+68732911 Msa0420280:CDS
AGTATACACTAATTCTGTCA+TGG 0.578832 3_2:-68735935 None:intergenic
GTCGTCTTCAAATGAAGGCG+GGG 0.581705 3_2:-68735727 None:intergenic
TTTGGTGGAGTTACTAGCTG+AGG 0.592886 3_2:-68732871 None:intergenic
GCAAGATGAAAGCCAAAGGC+CGG 0.597747 3_2:+68736151 Msa0420280:three_prime_UTR
ACCTGAGCAGGCGCACCTGG+AGG 0.601220 3_2:-68733219 None:intergenic
CTGGAGAACAGTGGATGTGT+TGG 0.601316 3_2:+68735445 Msa0420280:CDS
TATGTACTAGGTTATAGAAG+TGG 0.602466 3_2:+68734994 Msa0420280:intron
TATAGAAGTGGAGATAAATG+GGG 0.632566 3_2:+68735006 Msa0420280:CDS
GCAGCAACAAGTTGTTCGTG+AGG 0.634558 3_2:+68733179 Msa0420280:CDS
AATGGGGTGAAGCAAAAGAG+TGG 0.635095 3_2:+68735022 Msa0420280:CDS
ATGTGCAAGATGAAAGCCAA+AGG 0.643112 3_2:+68736147 Msa0420280:three_prime_UTR
TTCAGGTACCTGGAGAACAG+TGG 0.643237 3_2:+68735436 Msa0420280:intron
GGGTCGTCTTCAAATGAAGG+CGG 0.644771 3_2:-68735729 None:intergenic
TTACATATATCAGCATAGCA+AGG 0.671867 3_2:-68735765 None:intergenic
CAGAAGGACCAACTAGCCAG+TGG 0.676589 3_2:-68734188 None:intergenic
GCTACTGCTATCATTCGGTG+TGG 0.696520 3_2:+68732916 Msa0420280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATCCAAAAAAAAT+TGG - chr3_2:68735608-68735627 None:intergenic 10.0%
!! TAATGAAATATAAGCAAAAA+TGG - chr3_2:68733633-68733652 None:intergenic 15.0%
!!! TTTTTGCTTATATTTCATTA+TGG + chr3_2:68733633-68733652 Msa0420280:intron 15.0%
!!! TGTGAAAACTTTTTATATAT+AGG + chr3_2:68733994-68734013 Msa0420280:intron 15.0%
!! AGCAATATAAATTACATAAT+TGG - chr3_2:68734242-68734261 None:intergenic 15.0%
!!! AGTAAAAACGTTTTATATAT+TGG + chr3_2:68734465-68734484 Msa0420280:intron 15.0%
!!! ATATTTTTTTTTTCTTGTTC+AGG + chr3_2:68735419-68735438 Msa0420280:intron 15.0%
!!! GTTAGAATATATAAATCTTT+TGG - chr3_2:68735824-68735843 None:intergenic 15.0%
!! TATTGTAATATATTTGTCAA+AGG + chr3_2:68735996-68736015 Msa0420280:three_prime_UTR 15.0%
!!! AAAATAAAGTCAAACAGTTT+TGG - chr3_2:68733379-68733398 None:intergenic 20.0%
!! ACAAAATTGAATGATATGAA+AGG - chr3_2:68733827-68733846 None:intergenic 20.0%
!! TACATATTTCAAACTAATAC+AGG - chr3_2:68734034-68734053 None:intergenic 20.0%
!!! AGTTTGAAATATGTACATTA+TGG + chr3_2:68734039-68734058 Msa0420280:intron 20.0%
!! TAAACAAACACTAAATTGAT+AGG - chr3_2:68734266-68734285 None:intergenic 20.0%
!! TTAAAAACGACTAAAAATCA+AGG - chr3_2:68734659-68734678 None:intergenic 20.0%
!!! TTTCTATCTGAAACTTTATA+AGG + chr3_2:68734849-68734868 Msa0420280:intron 20.0%
!! GTCATTGATATTTAGATTAT+TGG + chr3_2:68734971-68734990 Msa0420280:intron 20.0%
!! ATCAACAAAAATTCATTAGA+AGG - chr3_2:68735392-68735411 None:intergenic 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG - chr3_2:68735500-68735519 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG - chr3_2:68735501-68735520 None:intergenic 20.0%
!!! GATTTTTTCACTAATGAATT+TGG + chr3_2:68735502-68735521 Msa0420280:CDS 20.0%
! TAAAAAGAAGAAGGAAAAGA+AGG + chr3_2:68733074-68733093 Msa0420280:CDS 25.0%
! AAAAAGAAGAAGGAAAAGAA+GGG + chr3_2:68733075-68733094 Msa0420280:CDS 25.0%
!! TCTCTTTTATGTTTCTTTCA+AGG + chr3_2:68733262-68733281 Msa0420280:CDS 25.0%
!! TTAAGTTGTTTATCGAAACA+AGG + chr3_2:68733453-68733472 Msa0420280:intron 25.0%
! TTGCTTATATTTCATTATGG+AGG + chr3_2:68733636-68733655 Msa0420280:intron 25.0%
! TGCTTATATTTCATTATGGA+GGG + chr3_2:68733637-68733656 Msa0420280:intron 25.0%
!!! AATATGAATCTTTTGACTGA+AGG + chr3_2:68734066-68734085 Msa0420280:intron 25.0%
! ACGCTTGCAAAAAAAATTTA+AGG - chr3_2:68734310-68734329 None:intergenic 25.0%
!! CGTTTTATATATTGGAAGTT+AGG + chr3_2:68734473-68734492 Msa0420280:intron 25.0%
! TTGGACAATATTACATATCT+TGG - chr3_2:68734568-68734587 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG - chr3_2:68734716-68734735 None:intergenic 25.0%
! TCATGTGTGAAAACAAAAAA+TGG + chr3_2:68734884-68734903 Msa0420280:intron 25.0%
! AAAAAATGGCTGAAATATCA+AGG + chr3_2:68734898-68734917 Msa0420280:intron 25.0%
! TTAGATTATTGGTATGTACT+AGG + chr3_2:68734982-68735001 Msa0420280:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG + chr3_2:68735005-68735024 Msa0420280:CDS 25.0%
!!! CTATCAGTGGTTATTTTTTT+AGG + chr3_2:68735214-68735233 Msa0420280:intron 25.0%
! ATACTTGGAATCATTGTTAA+TGG - chr3_2:68735532-68735551 None:intergenic 25.0%
!!! TATGACTGACCAATTTTTTT+TGG + chr3_2:68735596-68735615 Msa0420280:intron 25.0%
! TTGATTGAATTGAACACAAA+AGG - chr3_2:68735801-68735820 None:intergenic 25.0%
!! CAATGACAGTATTTTTGAGA+AGG + chr3_2:68732990-68733009 Msa0420280:CDS 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG - chr3_2:68733060-68733079 None:intergenic 30.0%
! GTATGATTATGAGAGTTTTG+TGG + chr3_2:68733116-68733135 Msa0420280:CDS 30.0%
AGGATTGTTGAATTATCTAC+TGG + chr3_2:68733282-68733301 Msa0420280:CDS 30.0%
TTGTGACAATGTTTGTAAGA+AGG + chr3_2:68733311-68733330 Msa0420280:CDS 30.0%
! CTTTTGCCTATATTTCATTC+CGG - chr3_2:68733569-68733588 None:intergenic 30.0%
GAATGATATGAAAGGAGTAA+TGG - chr3_2:68733819-68733838 None:intergenic 30.0%
!! CAATTTTGTTGACTATGTAG+TGG + chr3_2:68733838-68733857 Msa0420280:intron 30.0%
! AAGGTTTGGAACTTTGATTT+CGG + chr3_2:68733876-68733895 Msa0420280:intron 30.0%
TAACTACGTTATTGCAGTTT+AGG + chr3_2:68734103-68734122 Msa0420280:intron 30.0%
AATTATTTCCACCAACAAGA+TGG + chr3_2:68734127-68734146 Msa0420280:CDS 30.0%
ATTATTTCCACCAACAAGAT+GGG + chr3_2:68734128-68734147 Msa0420280:CDS 30.0%
! GTTTAACTTCATAAGAGCAT+TGG + chr3_2:68734281-68734300 Msa0420280:intron 30.0%
TCAATCCATTTATTTGTGAG+TGG + chr3_2:68734370-68734389 Msa0420280:intron 30.0%
ATTTACCACCATTTGAAAAC+CGG - chr3_2:68734402-68734421 None:intergenic 30.0%
!! TACAAGTATTTTTGCTTTCC+CGG - chr3_2:68734428-68734447 None:intergenic 30.0%
CTAAAAATCAAGGAAATGAG+TGG - chr3_2:68734649-68734668 None:intergenic 30.0%
! CATTTTAAACCAAACTTCAG+AGG - chr3_2:68734717-68734736 None:intergenic 30.0%
! GTAACTCAACCTTTTTGAAT+TGG + chr3_2:68734776-68734795 Msa0420280:intron 30.0%
! ATGCCTTTCATTTTACTCAT+GGG + chr3_2:68734800-68734819 Msa0420280:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG + chr3_2:68734994-68735013 Msa0420280:intron 30.0%
GTTATAGAAGTGGAGATAAA+TGG + chr3_2:68735004-68735023 Msa0420280:CDS 30.0%
TATAGAAGTGGAGATAAATG+GGG + chr3_2:68735006-68735025 Msa0420280:CDS 30.0%
TCTACCTGCATTTCTTTATA+TGG - chr3_2:68735051-68735070 None:intergenic 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG + chr3_2:68735068-68735087 Msa0420280:intron 30.0%
TCAAAGGAGTAATAATCAGA+AGG - chr3_2:68735293-68735312 None:intergenic 30.0%
TCTGATTATTACTCCTTTGA+TGG + chr3_2:68735293-68735312 Msa0420280:intron 30.0%
ACTAATCTTTGCATTGCTTA+TGG + chr3_2:68735366-68735385 Msa0420280:intron 30.0%
TTAGTGAAAAAATCTTGGGT+AGG - chr3_2:68735496-68735515 None:intergenic 30.0%
ATGAGTTGTGATATGGTTTA+TGG + chr3_2:68735699-68735718 Msa0420280:CDS 30.0%
TTACATATATCAGCATAGCA+AGG - chr3_2:68735768-68735787 None:intergenic 30.0%
TATGCTGATATATGTAAGCA+TGG + chr3_2:68735771-68735790 Msa0420280:intron 30.0%
ATTGAATTGAACACAAAAGG+AGG - chr3_2:68735798-68735817 None:intergenic 30.0%
! CTAACACAAAAATAACTTGC+AGG + chr3_2:68735839-68735858 Msa0420280:intron 30.0%
AGTATACACTAATTCTGTCA+TGG - chr3_2:68735938-68735957 None:intergenic 30.0%
TTCTCATGATTTCTACTTTG+AGG + chr3_2:68735964-68735983 Msa0420280:three_prime_UTR 30.0%
! TTTGCTCTTGGAGCATATTT+TGG - chr3_2:68732892-68732911 None:intergenic 35.0%
AAATATGCTCCAAGAGCAAA+TGG + chr3_2:68732892-68732911 Msa0420280:CDS 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG - chr3_2:68732970-68732989 None:intergenic 35.0%
! GACTTTGTTTGCACGAAAAA+TGG + chr3_2:68733020-68733039 Msa0420280:CDS 35.0%
AGGGAATGCTAAAAAGAAGA+AGG + chr3_2:68733065-68733084 Msa0420280:CDS 35.0%
CTTAACTATGCATCTCTTTC+TGG - chr3_2:68733505-68733524 None:intergenic 35.0%
TTAGCAGACCTTCTATAAAG+AGG + chr3_2:68733666-68733685 Msa0420280:intron 35.0%
TAGCAGACCTTCTATAAAGA+GGG + chr3_2:68733667-68733686 Msa0420280:intron 35.0%
!! ATCTCTTTGGAGTTGTCATT+AGG + chr3_2:68733699-68733718 Msa0420280:intron 35.0%
TGTCCTGCATTTGACAATTT+AGG + chr3_2:68733741-68733760 Msa0420280:intron 35.0%
! TTTGGAACTTTGATTTCGGA+AGG + chr3_2:68733880-68733899 Msa0420280:intron 35.0%
AGTAACAAAATCACCTCAGA+AGG - chr3_2:68734207-68734226 None:intergenic 35.0%
TTGCAGAGCTGCATAATATT+AGG + chr3_2:68734617-68734636 Msa0420280:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG + chr3_2:68734618-68734637 Msa0420280:intron 35.0%
GTGAGAGTTACAAAATGTCT+TGG - chr3_2:68734691-68734710 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG - chr3_2:68734788-68734807 None:intergenic 35.0%
! CATGCCTTTCATTTTACTCA+TGG + chr3_2:68734799-68734818 Msa0420280:intron 35.0%
CATCCCATGAGTAAAATGAA+AGG - chr3_2:68734806-68734825 None:intergenic 35.0%
GTGTCCATATAAAGAAATGC+AGG + chr3_2:68735044-68735063 Msa0420280:CDS 35.0%
ATGTTAGTATCCACTATCCA+TGG + chr3_2:68735254-68735273 Msa0420280:intron 35.0%
!!! TTTTTTCTTGTTCAGGTACC+TGG + chr3_2:68735426-68735445 Msa0420280:intron 35.0%
GAAAGACAAGAAGACATACT+TGG - chr3_2:68735547-68735566 None:intergenic 35.0%
TGAAGACATGAGTTGTGATA+TGG + chr3_2:68735692-68735711 Msa0420280:CDS 35.0%
TTAGGACATATACTGGAGTT+TGG - chr3_2:68735878-68735897 None:intergenic 35.0%
TTGTAGCTTAGGACATATAC+TGG - chr3_2:68735885-68735904 None:intergenic 35.0%
!! ATGGTGCTACTGCTATCATT+CGG + chr3_2:68732911-68732930 Msa0420280:CDS 40.0%
CATTTGCAGAGCCTGTAATA+GGG + chr3_2:68733046-68733065 Msa0420280:CDS 40.0%
AGAAGAAGGAAAAGAAGGGT+TGG + chr3_2:68733079-68733098 Msa0420280:CDS 40.0%
!! AGAAGGGTTGGTTGGATATT+TGG + chr3_2:68733091-68733110 Msa0420280:CDS 40.0%
!! GAAGGGTTGGTTGGATATTT+GGG + chr3_2:68733092-68733111 Msa0420280:CDS 40.0%
TCTATAATATCCACCTGAGC+AGG - chr3_2:68733234-68733253 None:intergenic 40.0%
AGGTCTAAGTTGTTCGCTTT+AGG + chr3_2:68733473-68733492 Msa0420280:intron 40.0%
TATGCATCTCTTTCTGGATG+AGG - chr3_2:68733499-68733518 None:intergenic 40.0%
CTCATACTTAATACTCCCAC+CGG + chr3_2:68733547-68733566 Msa0420280:intron 40.0%
TGCCTATATTTCATTCCGGT+GGG - chr3_2:68733565-68733584 None:intergenic 40.0%
TTGCCTATATTTCATTCCGG+TGG - chr3_2:68733566-68733585 None:intergenic 40.0%
CAACTCCAAAGAGATTAGCA+AGG - chr3_2:68733694-68733713 None:intergenic 40.0%
ATTAGGCCTCCACTTATGTT+GGG + chr3_2:68733716-68733735 Msa0420280:intron 40.0%
GTGCCTAAATTGTCAAATGC+AGG - chr3_2:68733747-68733766 None:intergenic 40.0%
AATTGAGCCATGAGAAGGTT+TGG + chr3_2:68733862-68733881 Msa0420280:intron 40.0%
CAAAGTTCCAAACCTTCTCA+TGG - chr3_2:68733872-68733891 None:intergenic 40.0%
! TCCCAAGTTGGCTATTCATT+TGG + chr3_2:68733953-68733972 Msa0420280:intron 40.0%
CCCAAATGAATAGCCAACTT+GGG - chr3_2:68733957-68733976 None:intergenic 40.0%
! CCCAAGTTGGCTATTCATTT+GGG + chr3_2:68733954-68733973 Msa0420280:intron 40.0%
! CCAAGTTGGCTATTCATTTG+GGG + chr3_2:68733955-68733974 Msa0420280:intron 40.0%
TCGGTCCACTCACAAATAAA+TGG - chr3_2:68734378-68734397 None:intergenic 40.0%
TCAAATGGTGGTAAATCCTC+CGG + chr3_2:68734406-68734425 Msa0420280:intron 40.0%
!! AAGTATTTTTGCTTTCCCGG+AGG - chr3_2:68734425-68734444 None:intergenic 40.0%
AGTCTGGAAAGTCTTGAACA+GGG + chr3_2:68735190-68735209 Msa0420280:intron 40.0%
TAATCAGAAGGTCCAACCTT+CGG - chr3_2:68735281-68735300 None:intergenic 40.0%
ATCAGCATAGCAAGGTTGTT+TGG - chr3_2:68735760-68735779 None:intergenic 40.0%
TCTGCTCATGATTGTAGCTT+AGG - chr3_2:68735896-68735915 None:intergenic 40.0%
ATCATGAGCAGACACTTCTT+TGG + chr3_2:68735904-68735923 Msa0420280:exon 40.0%
ATGTGCAAGATGAAAGCCAA+AGG + chr3_2:68736147-68736166 Msa0420280:three_prime_UTR 40.0%
TTTGGTGGAGTTACTAGCTG+AGG - chr3_2:68732874-68732893 None:intergenic 45.0%
!! GCTCTTGGAGCATATTTTGG+TGG - chr3_2:68732889-68732908 None:intergenic 45.0%
TGTGGAATAGCTGAACCATC+TGG + chr3_2:68732934-68732953 Msa0420280:CDS 45.0%
! GTCTTTTGTCCTAAAGGAGC+TGG - chr3_2:68732964-68732983 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG - chr3_2:68733048-68733067 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG + chr3_2:68733045-68733064 Msa0420280:CDS 45.0%
! GAAGGAAAAGAAGGGTTGGT+TGG + chr3_2:68733083-68733102 Msa0420280:CDS 45.0%
CTTCTTTCTATGCTTCCTCC+AGG + chr3_2:68733204-68733223 Msa0420280:CDS 45.0%
!! CGGTGGGAGTATTAAGTATG+AGG - chr3_2:68733549-68733568 None:intergenic 45.0%
CTCCCACCGGAATGAAATAT+AGG + chr3_2:68733560-68733579 Msa0420280:intron 45.0%
GCAAGGACCCTCTTTATAGA+AGG - chr3_2:68733677-68733696 None:intergenic 45.0%
AGGGTCCTTGCTAATCTCTT+TGG + chr3_2:68733686-68733705 Msa0420280:intron 45.0%
CATTAGGCCTCCACTTATGT+TGG + chr3_2:68733715-68733734 Msa0420280:intron 45.0%
GTGGAAATTGAGCCATGAGA+AGG + chr3_2:68733857-68733876 Msa0420280:intron 45.0%
GATTTCGGAAGGCTCATAGT+AGG + chr3_2:68733891-68733910 Msa0420280:intron 45.0%
ACTCTTTCAGTGTCCCAAGT+TGG + chr3_2:68733941-68733960 Msa0420280:intron 45.0%
CCCCAAATGAATAGCCAACT+TGG - chr3_2:68733958-68733977 None:intergenic 45.0%
TGCAAGCGTTCTGCATTTCA+AGG + chr3_2:68734321-68734340 Msa0420280:intron 45.0%
TATTTGTGAGTGGACCGAAC+CGG + chr3_2:68734380-68734399 Msa0420280:intron 45.0%
CCACCATTTGAAAACCGGTT+CGG - chr3_2:68734397-68734416 None:intergenic 45.0%
CAAATGGTGGTAAATCCTCC+GGG + chr3_2:68734407-68734426 Msa0420280:intron 45.0%
TTGTCCAAGTGCTTCCACTT+TGG + chr3_2:68734580-68734599 Msa0420280:intron 45.0%
! TCCACTTTGGAGAGGATTGT+AGG + chr3_2:68734593-68734612 Msa0420280:intron 45.0%
ACCTACAATCCTCTCCAAAG+TGG - chr3_2:68734597-68734616 None:intergenic 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG + chr3_2:68734705-68734724 Msa0420280:intron 45.0%
CTTACTTGCAAGTTGCAAGC+TGG - chr3_2:68734757-68734776 None:intergenic 45.0%
AATGGGGTGAAGCAAAAGAG+TGG + chr3_2:68735022-68735041 Msa0420280:CDS 45.0%
CGAAAGCAATCAATCGAGTC+TGG + chr3_2:68735174-68735193 Msa0420280:intron 45.0%
GAGTCTGGAAAGTCTTGAAC+AGG + chr3_2:68735189-68735208 Msa0420280:intron 45.0%
TCTTGAACAGGGACTATCAG+TGG + chr3_2:68735201-68735220 Msa0420280:intron 45.0%
AGTTAAGCAGACAGCTCGAT+CGG - chr3_2:68735330-68735349 None:intergenic 45.0%
ACTGGGTCGTCTTCAAATGA+AGG - chr3_2:68735735-68735754 None:intergenic 45.0%
AGCAAGGTTGTTTGGAGACT+GGG - chr3_2:68735752-68735771 None:intergenic 45.0%
TAGCAAGGTTGTTTGGAGAC+TGG - chr3_2:68735753-68735772 None:intergenic 45.0%
!! TATAAATAGAAAAATTTATA+CGG - chr3_2:68734941-68734960 None:intergenic 5.0%
GCAGTAGCACCATTTGCTCT+TGG - chr3_2:68732904-68732923 None:intergenic 50.0%
! GCTACTGCTATCATTCGGTG+TGG + chr3_2:68732916-68732935 Msa0420280:CDS 50.0%
! AAAGGAGCTGGTTCACCAGA+TGG - chr3_2:68732952-68732971 None:intergenic 50.0%
TCTGGTGAACCAGCTCCTTT+AGG + chr3_2:68732952-68732971 Msa0420280:CDS 50.0%
GCAGCAACAAGTTGTTCGTG+AGG + chr3_2:68733179-68733198 Msa0420280:CDS 50.0%
GACAGACCCAACATAAGTGG+AGG - chr3_2:68733725-68733744 None:intergenic 50.0%
CAGGACAGACCCAACATAAG+TGG - chr3_2:68733728-68733747 None:intergenic 50.0%
CGGAAGGCTCATAGTAGGAA+TGG + chr3_2:68733896-68733915 Msa0420280:intron 50.0%
AACTCTGCAGCCCATCTTGT+TGG - chr3_2:68734141-68734160 None:intergenic 50.0%
TGACAGTGCCTTTCTTCCAC+TGG + chr3_2:68734172-68734191 Msa0420280:CDS 50.0%
CCAACTAGCCAGTGGAAGAA+AGG - chr3_2:68734183-68734202 None:intergenic 50.0%
! CCTTTCTTCCACTGGCTAGT+TGG + chr3_2:68734180-68734199 Msa0420280:CDS 50.0%
!! GGACCGAACCGGTTTTCAAA+TGG + chr3_2:68734391-68734410 Msa0420280:intron 50.0%
!! CCGAACCGGTTTTCAAATGG+TGG + chr3_2:68734394-68734413 Msa0420280:intron 50.0%
!! CTCTCCAAAGTGGAAGCACT+TGG - chr3_2:68734587-68734606 None:intergenic 50.0%
! CAAGTGCTTCCACTTTGGAG+AGG + chr3_2:68734585-68734604 Msa0420280:intron 50.0%
ATCCACTATCCATGGTCCGA+AGG + chr3_2:68735262-68735281 Msa0420280:intron 50.0%
AACCTTCGGACCATGGATAG+TGG - chr3_2:68735267-68735286 None:intergenic 50.0%
ACTATCCATGGTCCGAAGGT+TGG + chr3_2:68735266-68735285 Msa0420280:intron 50.0%
TTCAGGTACCTGGAGAACAG+TGG + chr3_2:68735436-68735455 Msa0420280:intron 50.0%
CAACACATCCACTGTTCTCC+AGG - chr3_2:68735447-68735466 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG + chr3_2:68735445-68735464 Msa0420280:CDS 50.0%
CTTCAAATGAAGGCGGGGTT+TGG - chr3_2:68735725-68735744 None:intergenic 50.0%
GTCGTCTTCAAATGAAGGCG+GGG - chr3_2:68735730-68735749 None:intergenic 50.0%
GGTCGTCTTCAAATGAAGGC+GGG - chr3_2:68735731-68735750 None:intergenic 50.0%
GGGTCGTCTTCAAATGAAGG+CGG - chr3_2:68735732-68735751 None:intergenic 50.0%
TCTGCAGCCCATCTTGTTGG+TGG - chr3_2:68734138-68734157 None:intergenic 55.0%
CAGAAGGACCAACTAGCCAG+TGG - chr3_2:68734191-68734210 None:intergenic 55.0%
! CTGGCTAGTTGGTCCTTCTG+AGG + chr3_2:68734191-68734210 Msa0420280:CDS 55.0%
AAGGTCCAACCTTCGGACCA+TGG - chr3_2:68735274-68735293 None:intergenic 55.0%
GGTGAGCTGAGGGCCATCAA+AGG - chr3_2:68735309-68735328 None:intergenic 60.0%
CAGCTCGATCGGTGAGCTGA+GGG - chr3_2:68735319-68735338 None:intergenic 60.0%
ACAGCTCGATCGGTGAGCTG+AGG - chr3_2:68735320-68735339 None:intergenic 60.0%
TCCTCCAGGTGCGCCTGCTC+AGG + chr3_2:68733218-68733237 Msa0420280:CDS 70.0%
ACCTGAGCAGGCGCACCTGG+AGG - chr3_2:68733222-68733241 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG + chr3_2:68733221-68733240 Msa0420280:CDS 70.0%
TCCACCTGAGCAGGCGCACC+TGG - chr3_2:68733225-68733244 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 68732844 68736173 68732844 ID=Msa0420280;Name=Msa0420280
chr3_2 mRNA 68732844 68736173 68732844 ID=Msa0420280-mRNA-1;Parent=Msa0420280;Name=Msa0420280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.83|1|1|1|6|263|298
chr3_2 exon 68732844 68733332 68732844 ID=Msa0420280-mRNA-1:exon:16216;Parent=Msa0420280-mRNA-1
chr3_2 exon 68734120 68734212 68734120 ID=Msa0420280-mRNA-1:exon:16217;Parent=Msa0420280-mRNA-1
chr3_2 exon 68735004 68735065 68735004 ID=Msa0420280-mRNA-1:exon:16218;Parent=Msa0420280-mRNA-1
chr3_2 exon 68735441 68735547 68735441 ID=Msa0420280-mRNA-1:exon:16219;Parent=Msa0420280-mRNA-1
chr3_2 exon 68735688 68735783 68735688 ID=Msa0420280-mRNA-1:exon:16220;Parent=Msa0420280-mRNA-1
chr3_2 exon 68735861 68736173 68735861 ID=Msa0420280-mRNA-1:exon:16221;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68732844 68733332 68732844 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68734120 68734212 68734120 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68735004 68735065 68735004 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68735441 68735547 68735441 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68735688 68735783 68735688 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 CDS 68735861 68735910 68735861 ID=Msa0420280-mRNA-1:cds;Parent=Msa0420280-mRNA-1
chr3_2 three_prime_UTR 68735911 68736173 68735911 ID=Msa0420280-mRNA-1:three_prime_utr;Parent=Msa0420280-mRNA-1
Gene Sequence

>Msa0420280

ATGGTGGTTCTTAACTTTCAGCTTGTTCCTCAGCTAGTAACTCCACCAAAATATGCTCCAAGAGCAAATGGTGCTACTGCTATCATTCGGTGTGGAATAGCTGAACCATCTGGTGAACCAGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAGAAGAAGGAAAAGAAGGGTTGGTTGGATATTTGGGAGTATGATTATGAGAGTTTTGTGGATGTGTCGAAAAGAGTAATGTTGCGTCGCTCTCGTTTGCAGCAGCAACAAGTTGTTCGTGAGGTTCTTCTTTCTATGCTTCCTCCAGGTGCGCCTGCTCAGGTGGATATTATAGAATTTTTACTCTCTTTTATGTTTCTTTCAAGGATTGTTGAATTATCTACTGGTATTACTTGTGACAATGTTTGTAAGAAGTTTAGGAAATTATTTCCACCAACAAGATGGGCTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTTGGTCCTTCTGAGGTTATAGAAGTGGAGATAAATGGGGTGAAGCAAAAGAGTGGTGTCCATATAAAGAAATGCAGGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCATTAACAATGATTCCAAATTTTGAAGACATGAGTTGTGATATGGTTTATGGCCAAACCCCGCCTTCATTTGAAGACGACCCAGTCTCCAAACAACCTTGCTATGCTGATATATGTTCTGTAGCGAATCCAAACTCCAGTATATGTCCTAAGCTACAATCATGA

Protein sequence

>Msa0420280

MVVLNFQLVPQLVTPPKYAPRANGATAIIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKEKKGWLDIWEYDYESFVDVSKRVMLRRSRLQQQQVVREVLLSMLPPGAPAQVDIIEFLLSFMFLSRIVELSTGITCDNVCKKFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKSGVHIKKCRYLENSGCVGQCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCDMVYGQTPPSFEDDPVSKQPCYADICSVANPNSSICPKLQS*