AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376590 MtrunA17_Chr3g0145851 97.794 272 3 2 1 269 1 272 0.0 526
Msa1376590 MtrunA17_Chr6g0450631 42.718 206 114 4 55 259 49 251 7.40e-47 158
Msa1376590 MtrunA17_Chr1g0198561 40.777 206 118 4 55 259 49 251 2.58e-43 149
Msa1376590 MtrunA17_Chr2g0324401 49.091 55 28 0 205 259 9 63 8.51e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376590 AT2G43030.1 73.585 265 64 2 10 269 8 271 1.24e-130 371
Msa1376590 AT3G17465.1 37.209 215 132 3 55 268 78 290 3.26e-38 137

Find 89 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACAATCTTAAGCTTTC+TGG 0.097361 tig0019825:+91470 None:intergenic
AAAGAGACTAATTAATTCTT+TGG 0.209215 tig0019825:+91345 None:intergenic
AAAGCTCATCATTCCCAATT+TGG 0.228676 tig0019825:+92060 None:intergenic
CAAATTGACCAAACCTGAAA+TGG 0.282604 tig0019825:-91903 Msa1376590:CDS
CATTCCTATGCGACATCTTC+AGG 0.315485 tig0019825:-91858 Msa1376590:CDS
TTTACAATAAATCATGTCTT+AGG 0.320590 tig0019825:-91179 Msa1376590:three_prime_UTR
GAAGGTATTGAAATGGAAAA+TGG 0.337920 tig0019825:+92217 None:intergenic
ATGATCAAAGGTGCTCTTCC+TGG 0.365904 tig0019825:-91423 Msa1376590:CDS
TTTCGTCTTCAATCCGTTGA+TGG 0.384156 tig0019825:-91833 Msa1376590:CDS
CATTTCTCAGTAGCTGAGAT+TGG 0.387976 tig0019825:-91219 Msa1376590:three_prime_UTR
TTTGACAATGAAGGGCTAAC+AGG 0.397586 tig0019825:+91290 None:intergenic
TCAAATACAAGGCGCTGATT+AGG 0.398930 tig0019825:+91803 None:intergenic
AAGATGACCCATTTCAGGTT+TGG 0.399688 tig0019825:+91895 None:intergenic
CTCTTGGAACCATGGCTCAT+TGG 0.403785 tig0019825:+91591 None:intergenic
TGGTGTGATGGGTACCAAAT+TGG 0.414953 tig0019825:-92074 Msa1376590:CDS
GTTGTTCCCGTCACTGTTGT+CGG 0.415769 tig0019825:-92019 Msa1376590:CDS
GGTGATCTTGTTGATGTCTC+TGG 0.428399 tig0019825:-91764 Msa1376590:CDS
ATTAGAAGAAGGTATTGAAA+TGG 0.434138 tig0019825:+92210 None:intergenic
AAGCTTTCTGGTCTTCCTGT+TGG 0.434373 tig0019825:+91482 None:intergenic
ACGCCGTCCAAGTTGGTTAC+CGG 0.438083 tig0019825:-91940 Msa1376590:CDS
TCCAAGTTGTCTGTGACTCT+TGG 0.442433 tig0019825:+91575 None:intergenic
TCCAAGAGTCACAGACAACT+TGG 0.460086 tig0019825:-91576 Msa1376590:CDS
TTCTTGCCAACAATCTTAGC+GGG 0.460342 tig0019825:+91372 None:intergenic
GAGTTACAGACAAGTAGTTA+AGG 0.460373 tig0019825:+91322 None:intergenic
ACTGTTGTCGGTTTCAAAGA+AGG 0.461503 tig0019825:-92007 Msa1376590:CDS
GGTAGTGAAAATGAGCTTAG+AGG 0.462997 tig0019825:-92104 Msa1376590:CDS
AGAGGCTGGTGTTGGTGTGA+TGG 0.463975 tig0019825:-92086 Msa1376590:CDS
TACACCTGGTCGCGTATACA+AGG 0.469173 tig0019825:-91535 Msa1376590:CDS
TTTCAGGTTTGGTCAATTTG+CGG 0.469193 tig0019825:+91906 None:intergenic
GTTGTAACCGTCGGTGGCGT+CGG 0.473671 tig0019825:+91961 None:intergenic
AAAGAAGATGCCTGGTAGGA+TGG 0.474224 tig0019825:-91511 Msa1376590:CDS
ATACATAAATTTGACAATGA+AGG 0.474290 tig0019825:+91281 None:intergenic
GAGGCTGGTGTTGGTGTGAT+GGG 0.474712 tig0019825:-92085 Msa1376590:CDS
TAACCCTCCGGTAACCAACT+TGG 0.478957 tig0019825:+91933 None:intergenic
CACAGACAACTTGGATCCAT+TGG 0.481197 tig0019825:-91567 Msa1376590:CDS
GTAGGATGGGTGGAACCAAC+AGG 0.493432 tig0019825:-91497 Msa1376590:CDS
GAAGAAGAAGAATTAGAAGA+AGG 0.493725 tig0019825:+92199 None:intergenic
TACGCGACCAGGTGTAGTTC+CGG 0.494636 tig0019825:+91542 None:intergenic
TTTCCCTTGTATACGCGACC+AGG 0.499382 tig0019825:+91531 None:intergenic
AGAAGATTACCAGGCTTACC+AGG 0.500896 tig0019825:+91405 None:intergenic
TGAAATGGGTCATCTTGAAA+AGG 0.503372 tig0019825:-91888 Msa1376590:CDS
ACGGGAACAACTTCACCGTT+AGG 0.508452 tig0019825:+92031 None:intergenic
AAGAAGATGCCTGGTAGGAT+GGG 0.509948 tig0019825:-91510 Msa1376590:CDS
TATACTATTCTTAATTCCTA+AGG 0.511742 tig0019825:-91261 Msa1376590:three_prime_UTR
GGTGTGATGGGTACCAAATT+GGG 0.512034 tig0019825:-92073 Msa1376590:CDS
AAATTGACCAAACCTGAAAT+GGG 0.513032 tig0019825:-91902 Msa1376590:CDS
TTGAAACCGACAACAGTGAC+GGG 0.513527 tig0019825:+92013 None:intergenic
GGTGCTCTTCCTGGTAAGCC+TGG 0.514459 tig0019825:-91414 Msa1376590:CDS
AAGCGTCATAACTTCAAAAG+AGG 0.517261 tig0019825:-91615 Msa1376590:CDS
AGGTGTAGTTCCGGCACCAA+TGG 0.518535 tig0019825:+91551 None:intergenic
TACATAAATTTGACAATGAA+GGG 0.518660 tig0019825:+91282 None:intergenic
TTGGTTCCACCCATCCTACC+AGG 0.519178 tig0019825:+91501 None:intergenic
ATGGGTCATCTTGAAAAGGT+TGG 0.519826 tig0019825:-91884 Msa1376590:CDS
GATGTCTCTGGCACCACCAT+CGG 0.522268 tig0019825:-91752 Msa1376590:CDS
GTAAGCCTGGTAATCTTCTA+CGG 0.530779 tig0019825:-91401 Msa1376590:CDS
GAACAACTTCACCGTTAGGT+TGG 0.533148 tig0019825:+92035 None:intergenic
CTCTGGCACCACCATCGGCA+AGG 0.534330 tig0019825:-91747 Msa1376590:CDS
TACAAGGGAAAGAAGATGCC+TGG 0.536322 tig0019825:-91519 Msa1376590:CDS
GTCTGTGACTCTTGGAACCA+TGG 0.543733 tig0019825:+91583 None:intergenic
CTGAAGATGTCGCATAGGAA+TGG 0.560330 tig0019825:+91859 None:intergenic
CAACTTGGATCCATTGGTGC+CGG 0.569215 tig0019825:-91561 Msa1376590:CDS
ATTTGCGGTCTCTAACCCTC+CGG 0.569415 tig0019825:+91921 None:intergenic
ATTAGGTTCAAAACCATCAA+CGG 0.570807 tig0019825:+91820 None:intergenic
TCTGGCACCACCATCGGCAA+GGG 0.572275 tig0019825:-91746 Msa1376590:CDS
CTTAATGTTATCATGATCAA+AGG 0.572918 tig0019825:-91435 Msa1376590:CDS
GTGAAAATGAGCTTAGAGGC+TGG 0.576499 tig0019825:-92100 Msa1376590:CDS
ATTGGTGCCGGAACTACACC+TGG 0.580799 tig0019825:-91549 Msa1376590:CDS
TTTGAAACCGACAACAGTGA+CGG 0.586413 tig0019825:+92012 None:intergenic
CCGTCCAAGTTGGTTACCGG+AGG 0.591201 tig0019825:-91937 Msa1376590:CDS
GTTCTTGCCAACAATCTTAG+CGG 0.594511 tig0019825:+91371 None:intergenic
AAGATGCCTGGTAGGATGGG+TGG 0.594546 tig0019825:-91507 Msa1376590:CDS
ACCTTGAAAACCCTTGCCGA+TGG 0.600155 tig0019825:+91736 None:intergenic
TGAAAAGCTCATCAAATACA+AGG 0.600821 tig0019825:+91792 None:intergenic
GCTATCCGTAGAAGATTACC+AGG 0.602366 tig0019825:+91396 None:intergenic
AGGGAAAGAAGATGCCTGGT+AGG 0.605040 tig0019825:-91515 Msa1376590:CDS
TTGAAAACCCTTGCCGATGG+TGG 0.607518 tig0019825:+91739 None:intergenic
ATCAAAACCGACGCCACCGA+CGG 0.609949 tig0019825:-91968 Msa1376590:CDS
GGTTACAACGCCGTCCAAGT+TGG 0.618166 tig0019825:-91947 Msa1376590:CDS
TATTGAAATGGAAAATGGTG+AGG 0.627513 tig0019825:+92222 None:intergenic
TCTTGCCAACAATCTTAGCG+GGG 0.638407 tig0019825:+91373 None:intergenic
CCTCCGGTAACCAACTTGGA+CGG 0.639997 tig0019825:+91937 None:intergenic
ATGAGCTTAGAGGCTGGTGT+TGG 0.640133 tig0019825:-92094 Msa1376590:CDS
AAAAGAGGACCAATGAGCCA+TGG 0.640937 tig0019825:-91600 Msa1376590:CDS
CGTCCAAGTTGGTTACCGGA+GGG 0.643249 tig0019825:-91936 Msa1376590:CDS
CTTGCCAACAATCTTAGCGG+GGG 0.643846 tig0019825:+91374 None:intergenic
GACGGCGTTGTAACCGTCGG+TGG 0.648118 tig0019825:+91955 None:intergenic
AACTCCTGAAGATGTCGCAT+AGG 0.655881 tig0019825:+91854 None:intergenic
TTGGACGGCGTTGTAACCGT+CGG 0.663802 tig0019825:+91952 None:intergenic
ACACCTGGTCGCGTATACAA+GGG 0.687415 tig0019825:-91534 Msa1376590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATCTTTCACTAA+TGG - tig0019825:91795-91814 Msa1376590:CDS 15.0%
!! ATAATAATATCTTTCACTAA+TGG - tig0019825:91795-91814 Msa1376590:CDS 15.0%
!! AAAGAGACTAATTAATTCTT+TGG + tig0019825:92121-92140 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG + tig0019825:92184-92203 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG + tig0019825:92185-92204 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG - tig0019825:92202-92221 Msa1376590:CDS 20.0%
!! TTTACAATAAATCATGTCTT+AGG - tig0019825:92284-92303 Msa1376590:five_prime_UTR 20.0%
!! AAAGAGACTAATTAATTCTT+TGG + tig0019825:92121-92140 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG + tig0019825:92184-92203 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG + tig0019825:92185-92204 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG - tig0019825:92202-92221 Msa1376590:CDS 20.0%
!! TTTACAATAAATCATGTCTT+AGG - tig0019825:92284-92303 Msa1376590:five_prime_UTR 20.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG + tig0019825:91256-91275 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG + tig0019825:91295-91314 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG + tig0019825:91996-92015 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG - tig0019825:92028-92047 Msa1376590:CDS 25.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG + tig0019825:91256-91275 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG + tig0019825:91295-91314 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG + tig0019825:91996-92015 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG - tig0019825:92028-92047 Msa1376590:CDS 25.0%
TATTGAAATGGAAAATGGTG+AGG + tig0019825:91244-91263 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG + tig0019825:91249-91268 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG + tig0019825:91267-91286 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG - tig0019825:91561-91580 Msa1376590:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG + tig0019825:91646-91665 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG + tig0019825:91674-91693 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG - tig0019825:91678-91697 Msa1376590:intron 30.0%
TATCAACTCAACAACTAGAA+GGG + tig0019825:91778-91797 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG + tig0019825:91779-91798 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG - tig0019825:91818-91837 Msa1376590:CDS 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG + tig0019825:92221-92240 None:intergenic 30.0%
TATTGAAATGGAAAATGGTG+AGG + tig0019825:91244-91263 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG + tig0019825:91249-91268 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG + tig0019825:91267-91286 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG - tig0019825:91561-91580 Msa1376590:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG + tig0019825:91646-91665 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG + tig0019825:91674-91693 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG - tig0019825:91678-91697 Msa1376590:intron 30.0%
TATCAACTCAACAACTAGAA+GGG + tig0019825:91778-91797 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG + tig0019825:91779-91798 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG - tig0019825:91818-91837 Msa1376590:CDS 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG + tig0019825:92221-92240 None:intergenic 30.0%
AAAGCTCATCATTCCCAATT+TGG + tig0019825:91406-91425 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG - tig0019825:91417-91436 Msa1376590:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG + tig0019825:91560-91579 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG - tig0019825:91560-91579 Msa1376590:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG + tig0019825:91576-91595 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG - tig0019825:91575-91594 Msa1376590:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG - tig0019825:91821-91840 Msa1376590:CDS 35.0%
AAGCGTCATAACTTCAAAAG+AGG - tig0019825:91848-91867 Msa1376590:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG + tig0019825:92144-92163 None:intergenic 35.0%
AAAGCTCATCATTCCCAATT+TGG + tig0019825:91406-91425 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG - tig0019825:91417-91436 Msa1376590:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG + tig0019825:91560-91579 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG - tig0019825:91560-91579 Msa1376590:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG + tig0019825:91576-91595 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG - tig0019825:91575-91594 Msa1376590:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG - tig0019825:91821-91840 Msa1376590:CDS 35.0%
AAGCGTCATAACTTCAAAAG+AGG - tig0019825:91848-91867 Msa1376590:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG + tig0019825:92144-92163 None:intergenic 35.0%
TTGCAGCAGCAAAGAAAAAG+AGG - tig0019825:91327-91346 Msa1376590:three_prime_UTR 40.0%
GGTAGTGAAAATGAGCTTAG+AGG - tig0019825:91359-91378 Msa1376590:CDS 40.0%
! TTTGAAACCGACAACAGTGA+CGG + tig0019825:91454-91473 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG - tig0019825:91456-91475 Msa1376590:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG + tig0019825:91571-91590 None:intergenic 40.0%
ATGGGTCATCTTGAAAAGGT+TGG - tig0019825:91579-91598 Msa1376590:CDS 40.0%
TTTCGTCTTCAATCCGTTGA+TGG - tig0019825:91630-91649 Msa1376590:intron 40.0%
!! TCAAATACAAGGCGCTGATT+AGG + tig0019825:91663-91682 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG + tig0019825:91765-91784 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG + tig0019825:91766-91785 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG - tig0019825:92062-92081 Msa1376590:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG + tig0019825:92094-92113 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG + tig0019825:92095-92114 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG + tig0019825:92176-92195 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG - tig0019825:92244-92263 Msa1376590:exon 40.0%
GAATGAAACACAACACCAAC+TGG + tig0019825:91161-91180 None:intergenic 40.0%
TTGCAGCAGCAAAGAAAAAG+AGG - tig0019825:91327-91346 Msa1376590:three_prime_UTR 40.0%
GGTAGTGAAAATGAGCTTAG+AGG - tig0019825:91359-91378 Msa1376590:CDS 40.0%
! TTTGAAACCGACAACAGTGA+CGG + tig0019825:91454-91473 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG - tig0019825:91456-91475 Msa1376590:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG + tig0019825:91571-91590 None:intergenic 40.0%
ATGGGTCATCTTGAAAAGGT+TGG - tig0019825:91579-91598 Msa1376590:CDS 40.0%
TTTCGTCTTCAATCCGTTGA+TGG - tig0019825:91630-91649 Msa1376590:intron 40.0%
!! TCAAATACAAGGCGCTGATT+AGG + tig0019825:91663-91682 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG + tig0019825:91765-91784 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG + tig0019825:91766-91785 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG - tig0019825:92062-92081 Msa1376590:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG + tig0019825:92094-92113 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG + tig0019825:92095-92114 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG + tig0019825:92176-92195 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG - tig0019825:92244-92263 Msa1376590:exon 40.0%
CAGCAGCAAAGAAAAAGAGG+AGG - tig0019825:91330-91349 Msa1376590:three_prime_UTR 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG - tig0019825:91338-91357 Msa1376590:exon 45.0%
GTGAAAATGAGCTTAGAGGC+TGG - tig0019825:91363-91382 Msa1376590:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG - tig0019825:91389-91408 Msa1376590:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG - tig0019825:91390-91409 Msa1376590:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG + tig0019825:91431-91450 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG + tig0019825:91453-91472 None:intergenic 45.0%
CTGAAGATGTCGCATAGGAA+TGG + tig0019825:91607-91626 None:intergenic 45.0%
CATTCCTATGCGACATCTTC+AGG - tig0019825:91605-91624 Msa1376590:CDS 45.0%
AACTCCTGAAGATGTCGCAT+AGG + tig0019825:91612-91631 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG - tig0019825:91699-91718 Msa1376590:intron 45.0%
AAAAGAGGACCAATGAGCCA+TGG - tig0019825:91863-91882 Msa1376590:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG - tig0019825:91887-91906 Msa1376590:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG + tig0019825:91891-91910 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG - tig0019825:91896-91915 Msa1376590:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG - tig0019825:91944-91963 Msa1376590:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG - tig0019825:91952-91971 Msa1376590:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG - tig0019825:91953-91972 Msa1376590:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG + tig0019825:91984-92003 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG - tig0019825:92040-92059 Msa1376590:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG + tig0019825:92061-92080 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG + tig0019825:92070-92089 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG + tig0019825:92093-92112 None:intergenic 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG - tig0019825:91330-91349 Msa1376590:three_prime_UTR 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG - tig0019825:91338-91357 Msa1376590:exon 45.0%
GTGAAAATGAGCTTAGAGGC+TGG - tig0019825:91363-91382 Msa1376590:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG - tig0019825:91389-91408 Msa1376590:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG - tig0019825:91390-91409 Msa1376590:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG + tig0019825:91431-91450 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG + tig0019825:91453-91472 None:intergenic 45.0%
CTGAAGATGTCGCATAGGAA+TGG + tig0019825:91607-91626 None:intergenic 45.0%
CATTCCTATGCGACATCTTC+AGG - tig0019825:91605-91624 Msa1376590:CDS 45.0%
AACTCCTGAAGATGTCGCAT+AGG + tig0019825:91612-91631 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG - tig0019825:91699-91718 Msa1376590:intron 45.0%
AAAAGAGGACCAATGAGCCA+TGG - tig0019825:91863-91882 Msa1376590:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG - tig0019825:91887-91906 Msa1376590:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG + tig0019825:91891-91910 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG - tig0019825:91896-91915 Msa1376590:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG - tig0019825:91944-91963 Msa1376590:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG - tig0019825:91952-91971 Msa1376590:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG - tig0019825:91953-91972 Msa1376590:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG + tig0019825:91984-92003 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG - tig0019825:92040-92059 Msa1376590:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG + tig0019825:92061-92080 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG + tig0019825:92070-92089 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG + tig0019825:92093-92112 None:intergenic 45.0%
ATGAGCTTAGAGGCTGGTGT+TGG - tig0019825:91369-91388 Msa1376590:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG + tig0019825:91435-91454 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG - tig0019825:91444-91463 Msa1376590:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG + tig0019825:91533-91552 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG + tig0019825:91545-91564 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG + tig0019825:91727-91746 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG - tig0019825:91726-91745 Msa1376590:intron 50.0%
ACCTTGAAAACCCTTGCCGA+TGG + tig0019825:91730-91749 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG + tig0019825:91875-91894 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG + tig0019825:91883-91902 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG - tig0019825:91902-91921 Msa1376590:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG - tig0019825:91928-91947 Msa1376590:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG - tig0019825:91929-91948 Msa1376590:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG + tig0019825:91935-91954 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG - tig0019825:91948-91967 Msa1376590:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG - tig0019825:92085-92104 Msa1376590:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG + tig0019825:92092-92111 None:intergenic 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG - tig0019825:91369-91388 Msa1376590:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG + tig0019825:91435-91454 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG - tig0019825:91444-91463 Msa1376590:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG + tig0019825:91533-91552 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG + tig0019825:91545-91564 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG + tig0019825:91727-91746 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG - tig0019825:91726-91745 Msa1376590:intron 50.0%
ACCTTGAAAACCCTTGCCGA+TGG + tig0019825:91730-91749 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG + tig0019825:91875-91894 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG + tig0019825:91883-91902 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG - tig0019825:91902-91921 Msa1376590:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG - tig0019825:91928-91947 Msa1376590:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG - tig0019825:91929-91948 Msa1376590:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG + tig0019825:91935-91954 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG - tig0019825:91948-91967 Msa1376590:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG - tig0019825:92085-92104 Msa1376590:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG + tig0019825:92092-92111 None:intergenic 50.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG - tig0019825:91377-91396 Msa1376590:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG - tig0019825:91378-91397 Msa1376590:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG - tig0019825:91495-91514 Msa1376590:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG + tig0019825:91514-91533 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG - tig0019825:91516-91535 Msa1376590:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG - tig0019825:91523-91542 Msa1376590:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG + tig0019825:91529-91548 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG - tig0019825:91527-91546 Msa1376590:CDS 55.0%
GATGTCTCTGGCACCACCAT+CGG - tig0019825:91711-91730 Msa1376590:intron 55.0%
AGGTGTAGTTCCGGCACCAA+TGG + tig0019825:91915-91934 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG - tig0019825:91914-91933 Msa1376590:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG + tig0019825:91924-91943 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG - tig0019825:91956-91975 Msa1376590:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG + tig0019825:91965-91984 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG - tig0019825:91966-91985 Msa1376590:CDS 55.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG - tig0019825:91377-91396 Msa1376590:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG - tig0019825:91378-91397 Msa1376590:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG - tig0019825:91495-91514 Msa1376590:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG + tig0019825:91514-91533 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG - tig0019825:91516-91535 Msa1376590:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG - tig0019825:91523-91542 Msa1376590:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG + tig0019825:91529-91548 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG - tig0019825:91527-91546 Msa1376590:CDS 55.0%
GATGTCTCTGGCACCACCAT+CGG - tig0019825:91711-91730 Msa1376590:intron 55.0%
AGGTGTAGTTCCGGCACCAA+TGG + tig0019825:91915-91934 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG - tig0019825:91914-91933 Msa1376590:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG + tig0019825:91924-91943 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG - tig0019825:91956-91975 Msa1376590:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG + tig0019825:91965-91984 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG - tig0019825:91966-91985 Msa1376590:CDS 55.0%
GTTGTAACCGTCGGTGGCGT+CGG + tig0019825:91505-91524 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG - tig0019825:91526-91545 Msa1376590:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG - tig0019825:91717-91736 Msa1376590:intron 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG - tig0019825:92049-92068 Msa1376590:CDS 60.0%
GTTGTAACCGTCGGTGGCGT+CGG + tig0019825:91505-91524 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG - tig0019825:91526-91545 Msa1376590:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG - tig0019825:91717-91736 Msa1376590:intron 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG - tig0019825:92049-92068 Msa1376590:CDS 60.0%
GACGGCGTTGTAACCGTCGG+TGG + tig0019825:91511-91530 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG - tig0019825:91716-91735 Msa1376590:intron 65.0%
GACGGCGTTGTAACCGTCGG+TGG + tig0019825:91511-91530 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG - tig0019825:91716-91735 Msa1376590:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 91161 92324 91161 ID=Msa1376590;Name=Msa1376590
tig0019825 mRNA 91161 92324 91161 ID=Msa1376590-mRNA-1;Parent=Msa1376590;Name=Msa1376590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|195|269
tig0019825 exon 91161 91645 91161 ID=Msa1376590-mRNA-1:exon:5214;Parent=Msa1376590-mRNA-1
tig0019825 exon 91738 92324 91738 ID=Msa1376590-mRNA-1:exon:5213;Parent=Msa1376590-mRNA-1
tig0019825 five_prime_UTR 92258 92324 92258 ID=Msa1376590-mRNA-1:five_prime_utr;Parent=Msa1376590-mRNA-1
tig0019825 CDS 91738 92257 91738 ID=Msa1376590-mRNA-1:cds;Parent=Msa1376590-mRNA-1
tig0019825 CDS 91356 91645 91356 ID=Msa1376590-mRNA-1:cds;Parent=Msa1376590-mRNA-1
tig0019825 three_prime_UTR 91161 91355 91161 ID=Msa1376590-mRNA-1:three_prime_utr;Parent=Msa1376590-mRNA-1
Gene Sequence

>Msa1376590

ATGTCTATCATTTCCTCACCATTTTCCATTTCAATACCTTCTTCTAATTCTTCTTCTTCACTTTCCTTTTCAACTTCTTTTTCTACTCAATTTGTGAAATTGCAGCAGCAAAGAAAAAGAGGAGGAGCGATGGTAGTGAAAATGAGCTTAGAGGCTGGTGTTGGTGTGATGGGTACCAAATTGGGAATGATGAGCTTTTTCCAACCTAACGGTGAAGTTGTTCCCGTCACTGTTGTCGGTTTCAAAGAAGGCAACATCGTCACTCAAATCAAAACCGACGCCACCGACGGTTACAACGCCGTCCAAGTTGGTTACCGGAGGGTTAGAGACCGCAAATTGACCAAACCTGAAATGGGTCATCTTGAAAAGGTTGGAGCCATTCCTATGCGACATCTTCAGGAGTTTCGTCTTCAATCCGTTGATGGTTTTGAACCTAATCAGCGCCTTGTATTTGATGAGCTTTTCAATGAAGGTGATCTTGTTGATGTCTCTGGCACCACCATCGGCAAGGGTTTTCAAGGTGGTATCAAGCGTCATAACTTCAAAAGAGGACCAATGAGCCATGGTTCCAAGAGTCACAGACAACTTGGATCCATTGGTGCCGGAACTACACCTGGTCGCGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGTGGAACCAACAGGAAGACCAGAAAGCTTAAGATTGTTAAAATTGATAAAGATCTTAATGTTATCATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGTAATCTTCTACGGATAGCCCCCGCTAAGATTGTTGGCAAGAACATTCCAAAGAATTAA

Protein sequence

>Msa1376590

MSIISSPFSISIPSSNSSSSLSFSTSFSTQFVKLQQQRKRGGAMVVKMSLEAGVGVMGTKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHLEKVGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN*