AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435740 MtrunA17_Chr3g0143321 95.405 457 19 2 1 456 1 456 0.0 870
Msa0435740 MtrunA17_Chr1g0200011 25.148 338 177 10 108 417 54 343 1.33e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435740 AT1G76050.2 66.754 382 110 3 62 440 62 429 2.04e-178 506
Msa0435740 AT1G76050.1 66.165 266 73 3 62 324 62 313 1.60e-114 339
Msa0435740 AT3G52260.4 26.165 279 149 7 108 368 56 295 1.27e-16 81.3
Msa0435740 AT3G52260.2 26.071 280 148 7 108 368 56 295 3.77e-16 80.1

Find 126 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCCGGCGTAATTCGATTT+TGG 0.204182 3_2:+89075175 None:intergenic
TCGTGCGCATGCCAAGTATT+TGG 0.214985 3_2:-89070995 Msa0435740:CDS
ACGGAATTTATAGTTGTTAA+TGG 0.217365 3_2:+89075255 None:intergenic
GAATCTGATGATGAACTTAA+TGG 0.254410 3_2:-89073140 Msa0435740:CDS
ATGAAGTTCGAAAGTGAAAT+TGG 0.259397 3_2:+89075299 None:intergenic
GGGGTACCTACTCCAGTTTC+TGG 0.276248 3_2:-89072795 Msa0435740:CDS
ATCATACGAAGCCGGTTATT+AGG 0.304094 3_2:+89072744 None:intergenic
ACGTCTGGGACACTTGTAAA+TGG 0.307453 3_2:-89073230 Msa0435740:CDS
TGCCTTCATGCTTTGACTCT+CGG 0.309092 3_2:-89070844 Msa0435740:CDS
CGTGCGCATGCCAAGTATTT+GGG 0.328224 3_2:-89070994 Msa0435740:CDS
CGGAATTTATAGTTGTTAAT+GGG 0.336983 3_2:+89075256 None:intergenic
AAAGAAATGTTAAAGAAGTA+TGG 0.351082 3_2:+89070542 None:intergenic
ACCTCAACACGTCCAGAAAC+TGG 0.356510 3_2:+89072783 None:intergenic
GCCTTCATGCTTTGACTCTC+GGG 0.373527 3_2:-89070843 Msa0435740:intron
CTGCTAGGTGATGAGGTATA+TGG 0.375337 3_2:-89070964 Msa0435740:CDS
AAAGTAATTGAGATACTTGC+TGG 0.384759 3_2:-89072156 Msa0435740:CDS
AAACAGTTTCTGAGCTAGAT+AGG 0.391798 3_2:-89070870 Msa0435740:CDS
TTGAGCCAGCTTCGTAGAAT+TGG 0.391980 3_2:-89070642 Msa0435740:CDS
AAAATGTCATTAAAATCTAC+AGG 0.393988 3_2:+89070663 None:intergenic
TCTTTAGAAAATTCAACATT+TGG 0.398853 3_2:+89073185 None:intergenic
GTTGAGTGGAAGTTGGAAAC+TGG 0.401765 3_2:-89072117 Msa0435740:CDS
TTGTAATTTGTAAGCCGGTT+TGG 0.406008 3_2:-89070573 Msa0435740:exon
TCTAATCTGTGTACAATCCC+TGG 0.409587 3_2:+89073053 None:intergenic
GAAAATTGAGACTCGATAGT+TGG 0.424427 3_2:-89075108 Msa0435740:CDS
GGAAACTGGGCGCACTCATC+AGG 0.428189 3_2:-89072103 Msa0435740:intron
TTAATGGGAGAGAAGTAAAA+TGG 0.431537 3_2:+89075271 None:intergenic
CCAGCACCTGGCAATACGTC+TGG 0.433660 3_2:-89073245 Msa0435740:CDS
TAGAAAATTCAACATTTGGC+AGG 0.440551 3_2:+89073189 None:intergenic
TGGATTTCTTCTCGCATCAA+TGG 0.441664 3_2:-89075088 Msa0435740:CDS
AGGTTTCAGCATCCTCATAC+AGG 0.447372 3_2:-89070714 Msa0435740:CDS
GTTTCTTTCAATGTCAGAGC+TGG 0.450108 3_2:-89073709 Msa0435740:CDS
CAGAGGTACACCCAAATACT+TGG 0.452967 3_2:+89070984 None:intergenic
CTTCGTATGATCGCTGTAGC+TGG 0.457054 3_2:-89072732 Msa0435740:CDS
TACGACGGTGGAATCAAATC+TGG 0.460914 3_2:-89075130 Msa0435740:CDS
CACTACCAATTCTACGAAGC+TGG 0.462868 3_2:+89070637 None:intergenic
GTCTACGTTAGTCTCACTGC+CGG 0.477724 3_2:-89072816 Msa0435740:CDS
TTATTAGGATCACGGCCAAC+AGG 0.479835 3_2:+89072759 None:intergenic
TTCGGAATTACCATGTGAGC+AGG 0.484681 3_2:+89073577 None:intergenic
CAACATTTGGCAGGTTGCAA+TGG 0.489674 3_2:+89073198 None:intergenic
ACCCTTCAGAAGAACTTGAC+TGG 0.494113 3_2:+89073108 None:intergenic
GGGTATTGTAATTTGTAAGC+CGG 0.495438 3_2:-89070578 Msa0435740:exon
TTTCTTTCAATGTCAGAGCT+GGG 0.495851 3_2:-89073708 Msa0435740:CDS
GAATTACGCCGGCGTGCGGT+TGG 0.496847 3_2:-89075167 Msa0435740:CDS
TTGGCCGTGATCCTAATAAC+CGG 0.497077 3_2:-89072755 Msa0435740:CDS
TGCATTGGTTGAGTGGAAGT+TGG 0.497604 3_2:-89072124 Msa0435740:CDS
TCCAGTTTCTGGACGTGTTG+AGG 0.498584 3_2:-89072784 Msa0435740:CDS
GTTAAAGAAGTATGGTAAGA+AGG 0.498862 3_2:+89070550 None:intergenic
GCTGGACTCGTTCATGTCAA+TGG 0.501112 3_2:-89075031 Msa0435740:CDS
TCACCTACTAGCCGCATGAC+GGG 0.501679 3_2:+89072689 None:intergenic
AACATTTCGCTATGCAAACT+CGG 0.501751 3_2:+89070895 None:intergenic
GTAGCTGTGCATTGGTTGAG+TGG 0.505625 3_2:-89072131 Msa0435740:CDS
CAATGGCCGTGTTGTTGATA+AGG 0.509560 3_2:-89075014 Msa0435740:intron
GCAGCAGTTGAGAGCTGTGC+CGG 0.509649 3_2:-89073656 Msa0435740:CDS
CATAAATAAACCTGCTCACA+TGG 0.510867 3_2:-89073587 Msa0435740:intron
TCTACGTTAGTCTCACTGCC+GGG 0.511350 3_2:-89072815 Msa0435740:CDS
GTATGGTAAGAAGGCCAAAC+CGG 0.512644 3_2:+89070559 None:intergenic
GTTTATTTATGACTAGCAAA+TGG 0.513827 3_2:+89073599 None:intergenic
AGTGTCCCAGACGTATTGCC+AGG 0.521402 3_2:+89073239 None:intergenic
GTCCAGTCAAGTATTAAAGC+TGG 0.521976 3_2:-89075049 Msa0435740:CDS
GAAATCGTCGACTACGACGG+TGG 0.522087 3_2:-89075142 Msa0435740:CDS
CGGATTTCGCAATGGAGGAA+CGG 0.524552 3_2:+89075236 None:intergenic
GCATCCTCATACAGGGGAGC+AGG 0.525403 3_2:-89070706 Msa0435740:CDS
TGCAAACTCGGAGTTGTTCG+TGG 0.526136 3_2:+89070907 None:intergenic
TCCCAGTCAAGTTCTTCTGA+AGG 0.527724 3_2:-89073110 Msa0435740:CDS
GTCCAGCTTTAATACTTGAC+TGG 0.528396 3_2:+89075047 None:intergenic
CCCTTCAGAAGAACTTGACT+GGG 0.529961 3_2:+89073109 None:intergenic
AAGCCCGTCATGCGGCTAGT+AGG 0.531246 3_2:-89072692 Msa0435740:intron
ATCATCGAAGAAAGTAGAAA+CGG 0.535644 3_2:+89075216 None:intergenic
TGCACCTGCTCCCCTGTATG+AGG 0.537559 3_2:+89070702 None:intergenic
TTCGATGATTCAAACTCCAA+AGG 0.541777 3_2:-89075202 Msa0435740:CDS
TTATCGCTTAACACCTCATG+TGG 0.549398 3_2:-89075355 Msa0435740:CDS
TAGGTTGTGCATCCAGCACC+TGG 0.549682 3_2:-89073257 Msa0435740:CDS
CCAGACGTATTGCCAGGTGC+TGG 0.551763 3_2:+89073245 None:intergenic
CTAATCTGTGTACAATCCCT+GGG 0.557086 3_2:+89073054 None:intergenic
CCCAGTCAAGTTCTTCTGAA+GGG 0.559475 3_2:-89073109 Msa0435740:CDS
GGACGTGTTGAGGTTCCTGT+TGG 0.563398 3_2:-89072774 Msa0435740:CDS
TGGGTTACTAGTTGTCGCTA+AGG 0.563661 3_2:-89073018 Msa0435740:intron
TGTACCTCTGCTAGGTGATG+AGG 0.565230 3_2:-89070971 Msa0435740:CDS
CATTTCACGATAATACTCAC+TGG 0.569644 3_2:+89075378 None:intergenic
TGAAAGTATTTCTCACTCAA+AGG 0.574310 3_2:-89070616 Msa0435740:CDS
GGTTTCAGCATCCTCATACA+GGG 0.574635 3_2:-89070713 Msa0435740:CDS
AAGTAATTGAGATACTTGCT+GGG 0.576544 3_2:-89072155 Msa0435740:CDS
CAGCACCTGGCAATACGTCT+GGG 0.578291 3_2:-89073244 Msa0435740:CDS
TGTGCCGGAAAACATACCTC+TGG 0.579322 3_2:-89073641 Msa0435740:CDS
TCTGTGGCATCAATTCGCCC+AGG 0.579381 3_2:-89073071 Msa0435740:CDS
GCATGGTCTTGTCATTGCTA+CGG 0.579433 3_2:-89070930 Msa0435740:CDS
AGATTAGACAAAGGCACGAG+TGG 0.588012 3_2:-89073038 Msa0435740:CDS
ATCACCTACTAGCCGCATGA+CGG 0.592873 3_2:+89072688 None:intergenic
TTCTTTCAATGTCAGAGCTG+GGG 0.593498 3_2:-89073707 Msa0435740:CDS
CTAGGTGATGAGGTATATGG+AGG 0.595073 3_2:-89070961 Msa0435740:CDS
TATTTGGGTGTACCTCTGCT+AGG 0.595506 3_2:-89070979 Msa0435740:CDS
GTTTCAGCATCCTCATACAG+GGG 0.596383 3_2:-89070712 Msa0435740:CDS
CTGTGGCATCAATTCGCCCA+GGG 0.600609 3_2:-89073070 Msa0435740:CDS
AAATGTCATTAAAATCTACA+GGG 0.601078 3_2:+89070664 None:intergenic
GTTAGATTCTAGATTGTCTG+TGG 0.602572 3_2:-89073087 Msa0435740:CDS
ACCCGAGAGTCAAAGCATGA+AGG 0.607294 3_2:+89070842 None:intergenic
TTCTGTGAAAGCCCGTCATG+CGG 0.607595 3_2:-89072700 Msa0435740:CDS
TTGAGTGGAAGTTGGAAACT+GGG 0.615139 3_2:-89072116 Msa0435740:CDS
AGAGTCAAAGCATGAAGGCA+AGG 0.615312 3_2:+89070847 None:intergenic
TCAAGCTACGCACTATCAAG+AGG 0.626322 3_2:-89072839 Msa0435740:CDS
AGTAGAAACGGATTTCGCAA+TGG 0.630315 3_2:+89075228 None:intergenic
GAAGAAATCGTCGACTACGA+CGG 0.630430 3_2:-89075145 Msa0435740:CDS
AATCGAATTACGCCGGCGTG+CGG 0.637848 3_2:-89075171 Msa0435740:CDS
CAAGCTACGCACTATCAAGA+GGG 0.647303 3_2:-89072838 Msa0435740:CDS
GATTAGACAAAGGCACGAGT+GGG 0.651038 3_2:-89073037 Msa0435740:CDS
AGTAATTGAGATACTTGCTG+GGG 0.652006 3_2:-89072154 Msa0435740:CDS
CTACAGCGATCATACGAAGC+CGG 0.657140 3_2:+89072736 None:intergenic
AGAAACGGATTTCGCAATGG+AGG 0.657913 3_2:+89075231 None:intergenic
ATATGGAGGGACGAAAAGCA+TGG 0.659140 3_2:-89070947 Msa0435740:CDS
GAACCAAAATCGAATTACGC+CGG 0.662494 3_2:-89075178 Msa0435740:CDS
CTCACTGGATAGAACTTCCG+CGG 0.665478 3_2:+89075393 None:intergenic
TGAGATCAAATGTACGATTG+CGG 0.665499 3_2:-89073683 Msa0435740:CDS
GAAGCCGGTTATTAGGATCA+CGG 0.679316 3_2:+89072751 None:intergenic
GATTTCTTCCAACCGCACGC+CGG 0.680238 3_2:+89075159 None:intergenic
ACACGTCCAGAAACTGGAGT+AGG 0.683054 3_2:+89072789 None:intergenic
TCTTCATAAACTATATCCAG+AGG 0.684572 3_2:+89073625 None:intergenic
CTACGTTAGTCTCACTGCCG+GGG 0.686770 3_2:-89072814 Msa0435740:CDS
AGAAACTGGAGTAGGTACCC+CGG 0.688257 3_2:+89072797 None:intergenic
TAGGTGATGAGGTATATGGA+GGG 0.689938 3_2:-89070960 Msa0435740:CDS
ATGTCATTAAAATCTACAGG+GGG 0.696305 3_2:+89070666 None:intergenic
AATGTCATTAAAATCTACAG+GGG 0.696801 3_2:+89070665 None:intergenic
AACACCGCAAAATCCACATG+AGG 0.697166 3_2:+89075342 None:intergenic
TATACCTCATCACCTAGCAG+AGG 0.705895 3_2:+89070967 None:intergenic
AGACTACCTTATCAACAACA+CGG 0.706446 3_2:+89075008 None:intergenic
ATTGTACACAGATTAGACAA+AGG 0.708980 3_2:-89073047 Msa0435740:CDS
GTAATTGAGATACTTGCTGG+GGG 0.718933 3_2:-89072153 Msa0435740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAATATTGAATTATATT+AGG - chr3_2:89073010-89073029 Msa0435740:intron 10.0%
!! TAATATTACATATTACATTT+GGG - chr3_2:89073367-89073386 Msa0435740:intron 10.0%
!! AAATATTAAAATAGATTTAG+AGG - chr3_2:89074393-89074412 Msa0435740:intron 10.0%
!!! GTAATATTTTAATCAATAAT+GGG + chr3_2:89075126-89075145 None:intergenic 10.0%
!!! TGTAATATTTTAATCAATAA+TGG + chr3_2:89075127-89075146 None:intergenic 10.0%
!! ATCATTTAAATATTCAAGAA+TGG + chr3_2:89071414-89071433 None:intergenic 15.0%
!!! AAATATTTTGAGTATAATAG+TGG - chr3_2:89071578-89071597 Msa0435740:intron 15.0%
!! ATATTACATATATTTAGCAA+TGG + chr3_2:89073353-89073372 None:intergenic 15.0%
!! GTAATATTACATATTACATT+TGG - chr3_2:89073366-89073385 Msa0435740:intron 15.0%
!!! GTTTTCATATATTATATCTT+AGG + chr3_2:89073840-89073859 None:intergenic 15.0%
!! TTAGAAGATATTATAAGTTT+AGG + chr3_2:89074599-89074618 None:intergenic 15.0%
!!! GGAAATCATAATTTTTTTTA+GGG - chr3_2:89075161-89075180 Msa0435740:CDS 15.0%
!! CACTTTAATTGATAAAAAAA+AGG + chr3_2:89075367-89075386 None:intergenic 15.0%
!!! ATTACTACGAATTTTCTATT+TGG - chr3_2:89070706-89070725 Msa0435740:CDS 20.0%
!!! AATAAATAAATGCTCACTTT+TGG + chr3_2:89070979-89070998 None:intergenic 20.0%
!! ATAAATATATTCTAGGTCTA+GGG + chr3_2:89071719-89071738 None:intergenic 20.0%
!! AAATAACCAAACAAAAAACT+GGG + chr3_2:89071746-89071765 None:intergenic 20.0%
!!! ATTTTCATTCTAGATTACTT+AGG - chr3_2:89071838-89071857 Msa0435740:intron 20.0%
!!! AATACTTGATGATTAAATTC+AGG - chr3_2:89072210-89072229 Msa0435740:intron 20.0%
!!! TCTTTAGAAAATTCAACATT+TGG + chr3_2:89072456-89072475 None:intergenic 20.0%
!!! AAATGTTGAATTTTCTAAAG+AGG - chr3_2:89072455-89072474 Msa0435740:intron 20.0%
!! TTTGAGAAGTTTATTCAAAA+TGG - chr3_2:89073396-89073415 Msa0435740:intron 20.0%
!! TTTACAGATAATGTATTCTT+AGG - chr3_2:89073737-89073756 Msa0435740:intron 20.0%
!! TTACATAGTTTAAACATCTT+AGG - chr3_2:89073924-89073943 Msa0435740:intron 20.0%
!! AAGTGTTTCATGTAATAAAA+AGG - chr3_2:89074029-89074048 Msa0435740:intron 20.0%
!!! TTTCTTACTAAAGAACTTTT+AGG + chr3_2:89074299-89074318 None:intergenic 20.0%
!! TAAAAGTTCTTTAGTAAGAA+AGG - chr3_2:89074298-89074317 Msa0435740:intron 20.0%
!! AAATGTCATTAAAATCTACA+GGG + chr3_2:89074977-89074996 None:intergenic 20.0%
!! AAAATGTCATTAAAATCTAC+AGG + chr3_2:89074978-89074997 None:intergenic 20.0%
!! AAAGAAATGTTAAAGAAGTA+TGG + chr3_2:89075099-89075118 None:intergenic 20.0%
!!! GGGAAATCATAATTTTTTTT+AGG - chr3_2:89075160-89075179 Msa0435740:CDS 20.0%
! CGGAATTTATAGTTGTTAAT+GGG + chr3_2:89070385-89070404 None:intergenic 25.0%
! ACGGAATTTATAGTTGTTAA+TGG + chr3_2:89070386-89070405 None:intergenic 25.0%
!! ATATATCCCTTGTTTATTTG+TGG - chr3_2:89071172-89071191 Msa0435740:intron 25.0%
! TTCGAATATTTAGATGAGAA+AGG - chr3_2:89071218-89071237 Msa0435740:intron 25.0%
! TCGAATATTTAGATGAGAAA+GGG - chr3_2:89071219-89071238 Msa0435740:intron 25.0%
! CATAAATATATTCTAGGTCT+AGG + chr3_2:89071720-89071739 None:intergenic 25.0%
! GGGATACATAAATATATTCT+AGG + chr3_2:89071726-89071745 None:intergenic 25.0%
! GAAATAACCAAACAAAAAAC+TGG + chr3_2:89071747-89071766 None:intergenic 25.0%
!! TGTTTGGTTATTTCATCAAT+TGG - chr3_2:89071753-89071772 Msa0435740:intron 25.0%
!! ATTTATGATTTGCAAACAAG+AGG + chr3_2:89071818-89071837 None:intergenic 25.0%
! TAGATTACTTAGGTTCTTTA+AGG - chr3_2:89071848-89071867 Msa0435740:intron 25.0%
! GTTTATTTATGACTAGCAAA+TGG + chr3_2:89072042-89072061 None:intergenic 25.0%
!! AGAAATTTTCAGAAGGAAAA+GGG - chr3_2:89072308-89072327 Msa0435740:intron 25.0%
!! TGAATTATATTAGGTGCTTT+TGG - chr3_2:89073019-89073038 Msa0435740:CDS 25.0%
! ATAAATGTGTACACAAATGT+TGG + chr3_2:89073110-89073129 None:intergenic 25.0%
!! GTTTTATATCAACTGCTTAA+TGG - chr3_2:89073418-89073437 Msa0435740:intron 25.0%
! AATCTTAGAGAAATCCTAAT+TGG - chr3_2:89073572-89073591 Msa0435740:intron 25.0%
!!! TAAGACAACTTTTGTTTGAA+TGG - chr3_2:89073813-89073832 Msa0435740:intron 25.0%
! TGTTTAAACTATGTAACTTG+TGG + chr3_2:89073920-89073939 None:intergenic 25.0%
! AGGTCAAATGTTAAAAAAGA+TGG - chr3_2:89073944-89073963 Msa0435740:intron 25.0%
! AGATGTAAACATTTGATTCA+AGG - chr3_2:89073979-89073998 Msa0435740:intron 25.0%
! TTTATTACATGAAACACTTG+AGG + chr3_2:89074028-89074047 None:intergenic 25.0%
! AATGTCATTAAAATCTACAG+GGG + chr3_2:89074976-89074995 None:intergenic 25.0%
!! TCAAAGGCCAAATTTTTAAA+AGG - chr3_2:89075038-89075057 Msa0435740:CDS 25.0%
!!! CAAAGGCCAAATTTTTAAAA+GGG - chr3_2:89075039-89075058 Msa0435740:CDS 25.0%
!!! AAAGGCCAAATTTTTAAAAG+GGG - chr3_2:89075040-89075059 Msa0435740:CDS 25.0%
!!! CAATACCCCTTTTAAAAATT+TGG + chr3_2:89075048-89075067 None:intergenic 25.0%
ATGAAGTTCGAAAGTGAAAT+TGG + chr3_2:89070342-89070361 None:intergenic 30.0%
TTAATGGGAGAGAAGTAAAA+TGG + chr3_2:89070370-89070389 None:intergenic 30.0%
ATCATCGAAGAAAGTAGAAA+CGG + chr3_2:89070425-89070444 None:intergenic 30.0%
GTAGTAATTAGAGAACTTGT+AGG + chr3_2:89070694-89070713 None:intergenic 30.0%
AACCAAAATCCATGTTTATG+AGG + chr3_2:89070816-89070835 None:intergenic 30.0%
!! TCATAAACATGGATTTTGGT+TGG - chr3_2:89070815-89070834 Msa0435740:intron 30.0%
GTGATGAGTTAACTAATAGA+AGG + chr3_2:89070929-89070948 None:intergenic 30.0%
CAGAGATCCATTAATATCAA+TGG - chr3_2:89070953-89070972 Msa0435740:CDS 30.0%
! CTTTTGGCCATTGATATTAA+TGG + chr3_2:89070963-89070982 None:intergenic 30.0%
AAATTGTGAAGGACCAAATT+GGG + chr3_2:89071048-89071067 None:intergenic 30.0%
AAAATTGTGAAGGACCAAAT+TGG + chr3_2:89071049-89071068 None:intergenic 30.0%
AAATCCAGATCATTCAATCT+TGG - chr3_2:89071148-89071167 Msa0435740:intron 30.0%
TATTCCAAGATTGAATGATC+TGG + chr3_2:89071155-89071174 None:intergenic 30.0%
AACTGACCACAAATAAACAA+GGG + chr3_2:89071181-89071200 None:intergenic 30.0%
TCATATATTGCATTTGCAAG+AGG - chr3_2:89071312-89071331 Msa0435740:intron 30.0%
TTTAAATGATGCACCCAAAT+TGG - chr3_2:89071424-89071443 Msa0435740:intron 30.0%
TTTGAGAACTACCATTACTT+AGG - chr3_2:89071523-89071542 Msa0435740:intron 30.0%
ACCATTACTTAGGACATTTA+AGG - chr3_2:89071533-89071552 Msa0435740:intron 30.0%
!! TACTTTTCGAACAAGTATTG+TGG + chr3_2:89071658-89071677 None:intergenic 30.0%
!!! ATGTATCCCAGTTTTTTGTT+TGG - chr3_2:89071737-89071756 Msa0435740:intron 30.0%
GCTCAACTACAAATTAAGAA+AGG + chr3_2:89071888-89071907 None:intergenic 30.0%
! TAATTTGTAGTTGAGCATTG+TGG - chr3_2:89071892-89071911 Msa0435740:intron 30.0%
TCTTCATAAACTATATCCAG+AGG + chr3_2:89072016-89072035 None:intergenic 30.0%
AAATAACATCTTAGAGCAAG+TGG + chr3_2:89072087-89072106 None:intergenic 30.0%
TATCTACTGTACAATTATGC+AGG + chr3_2:89072129-89072148 None:intergenic 30.0%
! CAGAAATTTTCAGAAGGAAA+AGG - chr3_2:89072307-89072326 Msa0435740:intron 30.0%
TAGAAAATTCAACATTTGGC+AGG + chr3_2:89072452-89072471 None:intergenic 30.0%
! GAATCTGATGATGAACTTAA+TGG - chr3_2:89072498-89072517 Msa0435740:intron 30.0%
ATTGTACACAGATTAGACAA+AGG - chr3_2:89072591-89072610 Msa0435740:intron 30.0%
TATCAAGGCATACAAATACT+GGG + chr3_2:89072741-89072760 None:intergenic 30.0%
ATATCAAGGCATACAAATAC+TGG + chr3_2:89072742-89072761 None:intergenic 30.0%
TATTTGTATGCCTTGATATC+AGG - chr3_2:89072743-89072762 Msa0435740:CDS 30.0%
CCTACAGGTTAAAAGTTAAA+TGG + chr3_2:89073160-89073179 None:intergenic 30.0%
!! CCATTTAACTTTTAACCTGT+AGG - chr3_2:89073157-89073176 Msa0435740:CDS 30.0%
TTTATAAGCTAATGACCTAC+AGG + chr3_2:89073175-89073194 None:intergenic 30.0%
!! TTTTAAGTGAGTGCAAACTA+TGG + chr3_2:89073226-89073245 None:intergenic 30.0%
! AAAGTTGATTACTAACTGTC+AGG - chr3_2:89073456-89073475 Msa0435740:intron 30.0%
AAAGTAATTGAGATACTTGC+TGG - chr3_2:89073482-89073501 Msa0435740:intron 30.0%
AAGTAATTGAGATACTTGCT+GGG - chr3_2:89073483-89073502 Msa0435740:intron 30.0%
ACAACAAGATTATGCCAATT+AGG + chr3_2:89073589-89073608 None:intergenic 30.0%
TTGTAAGTGAGAGAACTAAA+GGG - chr3_2:89073605-89073624 Msa0435740:CDS 30.0%
ACATTGCATAGATGTACTAA+CGG - chr3_2:89073679-89073698 Msa0435740:CDS 30.0%
ACAGATAATGTATTCTTAGG+TGG - chr3_2:89073740-89073759 Msa0435740:intron 30.0%
AAGAAAAAACCCTAGCTTAA+AGG - chr3_2:89073871-89073890 Msa0435740:intron 30.0%
! CAACTTTTACCTTTAAGCTA+GGG + chr3_2:89073883-89073902 None:intergenic 30.0%
! ATGTAACTTGTGGTATTGTA+TGG + chr3_2:89073910-89073929 None:intergenic 30.0%
TAAAAAAGATGGAGAAACAG+AGG - chr3_2:89073955-89073974 Msa0435740:intron 30.0%
AAAAAAGATGGAGAAACAGA+GGG - chr3_2:89073956-89073975 Msa0435740:intron 30.0%
GTAAACATTTGATTCAAGGA+AGG - chr3_2:89073983-89074002 Msa0435740:intron 30.0%
GAATGAGTGAAAATACTACA+CGG - chr3_2:89074174-89074193 Msa0435740:intron 30.0%
AATGAGTGAAAATACTACAC+GGG - chr3_2:89074175-89074194 Msa0435740:intron 30.0%
TTAGCATTCAAGCAATAGTT+GGG - chr3_2:89074213-89074232 Msa0435740:intron 30.0%
TGGGTCTATTGTGTAAAAAT+TGG - chr3_2:89074232-89074251 Msa0435740:intron 30.0%
AAGAAAGGTAGATTAGATCA+AGG - chr3_2:89074313-89074332 Msa0435740:intron 30.0%
TAGGCTTTACTATATTACAG+TGG + chr3_2:89074580-89074599 None:intergenic 30.0%
ATAACTTCGTAGCTAAACTT+TGG - chr3_2:89074837-89074856 Msa0435740:intron 30.0%
! ATGACAATTGATAGCACTAT+TGG - chr3_2:89074883-89074902 Msa0435740:intron 30.0%
! AATTGATAGCACTATTGGTT+TGG - chr3_2:89074888-89074907 Msa0435740:intron 30.0%
ATGTCATTAAAATCTACAGG+GGG + chr3_2:89074975-89074994 None:intergenic 30.0%
!! TGAAAGTATTTCTCACTCAA+AGG - chr3_2:89075022-89075041 Msa0435740:CDS 30.0%
! GTTAAAGAAGTATGGTAAGA+AGG + chr3_2:89075091-89075110 None:intergenic 30.0%
! CACCAAATTATTTCCACTTT+TGG - chr3_2:89075302-89075321 Msa0435740:CDS 30.0%
AGCCAAAAGTGGAAATAATT+TGG + chr3_2:89075307-89075326 None:intergenic 30.0%
! AAGTTTTCATTTCAAAGCCG+CGG - chr3_2:89070228-89070247 Msa0435740:three_prime_UTR 35.0%
CATTTCACGATAATACTCAC+TGG + chr3_2:89070263-89070282 None:intergenic 35.0%
! TTGGAATGCTTTTGTTGCTA+TGG + chr3_2:89070323-89070342 None:intergenic 35.0%
TTCGATGATTCAAACTCCAA+AGG - chr3_2:89070436-89070455 Msa0435740:intron 35.0%
!!! ATTCGATTTTGGTTCTCCTT+TGG + chr3_2:89070455-89070474 None:intergenic 35.0%
GAAAATTGAGACTCGATAGT+TGG - chr3_2:89070530-89070549 Msa0435740:three_prime_UTR 35.0%
AGACTACCTTATCAACAACA+CGG + chr3_2:89070633-89070652 None:intergenic 35.0%
CAAATTCGGAACAGTTGAAA+TGG + chr3_2:89070669-89070688 None:intergenic 35.0%
AGAACTTGTAGGCACAAATT+CGG + chr3_2:89070683-89070702 None:intergenic 35.0%
AAATCCATGTTTATGAGGCT+GGG + chr3_2:89070811-89070830 None:intergenic 35.0%
AAAATCCATGTTTATGAGGC+TGG + chr3_2:89070812-89070831 None:intergenic 35.0%
! AGCCTCATAAACATGGATTT+TGG - chr3_2:89070811-89070830 Msa0435740:intron 35.0%
!!! AACATGGATTTTGGTTGGTT+AGG - chr3_2:89070820-89070839 Msa0435740:intron 35.0%
! TTTAGAGTGAAGACCCAATT+TGG - chr3_2:89071032-89071051 Msa0435740:intron 35.0%
! TCCTTCACAATTTTATACCG+AGG - chr3_2:89071055-89071074 Msa0435740:intron 35.0%
TCCTCGGTATAAAATTGTGA+AGG + chr3_2:89071059-89071078 None:intergenic 35.0%
CCTCTGTTTATAATGAGTCA+GGG + chr3_2:89071091-89071110 None:intergenic 35.0%
CCTGACTCATTATAAACAGA+GGG - chr3_2:89071089-89071108 Msa0435740:intron 35.0%
CTCATTATAAACAGAGGGAT+TGG - chr3_2:89071094-89071113 Msa0435740:intron 35.0%
GAACTGACCACAAATAAACA+AGG + chr3_2:89071182-89071201 None:intergenic 35.0%
! TATAGCTCTTGTTTGAGTCT+AGG - chr3_2:89071262-89071281 Msa0435740:intron 35.0%
! ATAGCTCTTGTTTGAGTCTA+GGG - chr3_2:89071263-89071282 Msa0435740:intron 35.0%
GAAGTCATAGATTCAAGTCA+TGG + chr3_2:89071344-89071363 None:intergenic 35.0%
CAAGGAAAGACTTCCAATTT+GGG + chr3_2:89071440-89071459 None:intergenic 35.0%
!! ACTAGGAGATTATTTCTGCA+AGG + chr3_2:89071458-89071477 None:intergenic 35.0%
TTACAGATGTAGTCTCAACT+AGG + chr3_2:89071475-89071494 None:intergenic 35.0%
GCCTTAAATGTCCTAAGTAA+TGG + chr3_2:89071537-89071556 None:intergenic 35.0%
TTTCTTTCAATGTCAGAGCT+GGG - chr3_2:89071930-89071949 Msa0435740:intron 35.0%
TGAGATCAAATGTACGATTG+CGG - chr3_2:89071955-89071974 Msa0435740:intron 35.0%
!! ATATCCAGAGGTATGTTTTC+CGG + chr3_2:89072004-89072023 None:intergenic 35.0%
CATAAATAAACCTGCTCACA+TGG - chr3_2:89072051-89072070 Msa0435740:intron 35.0%
!!! AGATAGTGCGACACTTTTTT+TGG - chr3_2:89072144-89072163 Msa0435740:CDS 35.0%
! CCTTCTGAAAATTTCTGACA+TGG + chr3_2:89072304-89072323 None:intergenic 35.0%
! CCATGTCAGAAATTTTCAGA+AGG - chr3_2:89072301-89072320 Msa0435740:intron 35.0%
CATTATATGCTCTTCAACCT+AGG - chr3_2:89072362-89072381 Msa0435740:intron 35.0%
GTTAGATTCTAGATTGTCTG+TGG - chr3_2:89072551-89072570 Msa0435740:intron 35.0%
GAATGTTCATCCTGATATCA+AGG + chr3_2:89072756-89072775 None:intergenic 35.0%
! AGTAATTGAGATACTTGCTG+GGG - chr3_2:89073484-89073503 Msa0435740:intron 35.0%
GTTGTAAGTGAGAGAACTAA+AGG - chr3_2:89073604-89073623 Msa0435740:CDS 35.0%
TAGTACATCTATGCAATGTC+CGG + chr3_2:89073678-89073697 None:intergenic 35.0%
!!! AGCTAGGGTTTTTTCTTCTT+TGG + chr3_2:89073868-89073887 None:intergenic 35.0%
! CCAACTTTTACCTTTAAGCT+AGG + chr3_2:89073884-89073903 None:intergenic 35.0%
CCTAGCTTAAAGGTAAAAGT+TGG - chr3_2:89073881-89073900 Msa0435740:intron 35.0%
AACATTTGATTCAAGGAAGG+TGG - chr3_2:89073986-89074005 Msa0435740:intron 35.0%
TTGATCGATAAAATGTTCCC+TGG + chr3_2:89074066-89074085 None:intergenic 35.0%
ATACTACACGGGATATGATT+AGG - chr3_2:89074186-89074205 Msa0435740:intron 35.0%
GTTAGCATTCAAGCAATAGT+TGG - chr3_2:89074212-89074231 Msa0435740:intron 35.0%
! TTTTGCCTTTAGTGATTGAG+TGG + chr3_2:89074340-89074359 None:intergenic 35.0%
CAATCACTAAAGGCAAAAGA+AGG - chr3_2:89074342-89074361 Msa0435740:intron 35.0%
AGATTTAGAGGACAATGCTT+TGG - chr3_2:89074405-89074424 Msa0435740:intron 35.0%
!! AGATCAAGTCTTATTCCACT+AGG + chr3_2:89074490-89074509 None:intergenic 35.0%
AACATTTCGCTATGCAAACT+CGG + chr3_2:89074746-89074765 None:intergenic 35.0%
AAACAGTTTCTGAGCTAGAT+AGG - chr3_2:89074768-89074787 Msa0435740:intron 35.0%
! GGGTATTGTAATTTGTAAGC+CGG - chr3_2:89075060-89075079 Msa0435740:CDS 35.0%
! TTGTAATTTGTAAGCCGGTT+TGG - chr3_2:89075065-89075084 Msa0435740:CDS 35.0%
ACAAGTTAATGAGCCAAAAG+TGG + chr3_2:89075318-89075337 None:intergenic 35.0%
!! CTCATTAACTTGTGCCTTAA+GGG - chr3_2:89075325-89075344 Msa0435740:CDS 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr3_2:89075342-89075361 None:intergenic 35.0%
TTATCGCTTAACACCTCATG+TGG - chr3_2:89070283-89070302 Msa0435740:intron 40.0%
! AACACCTCATGTGGATTTTG+CGG - chr3_2:89070292-89070311 Msa0435740:intron 40.0%
! AGTAGAAACGGATTTCGCAA+TGG + chr3_2:89070413-89070432 None:intergenic 40.0%
GAACCAAAATCGAATTACGC+CGG - chr3_2:89070460-89070479 Msa0435740:intron 40.0%
TGGATTTCTTCTCGCATCAA+TGG - chr3_2:89070550-89070569 Msa0435740:three_prime_UTR 40.0%
GTCCAGTCAAGTATTAAAGC+TGG - chr3_2:89070589-89070608 Msa0435740:exon 40.0%
! GTCCAGCTTTAATACTTGAC+TGG + chr3_2:89070594-89070613 None:intergenic 40.0%
CCTCCTTTCTCTTCTAAATG+CGG - chr3_2:89070781-89070800 Msa0435740:intron 40.0%
CTCCTTTCTCTTCTAAATGC+GGG - chr3_2:89070782-89070801 Msa0435740:intron 40.0%
TACCCGCATTTAGAAGAGAA+AGG + chr3_2:89070787-89070806 None:intergenic 40.0%
GTTGGTTAGGAAGATCTAGA+GGG - chr3_2:89070833-89070852 Msa0435740:intron 40.0%
GCATATCATCTGGAGAAGAA+GGG - chr3_2:89070855-89070874 Msa0435740:CDS 40.0%
!!! GGCTGGTTTTAATGTGTATG+TGG - chr3_2:89070903-89070922 Msa0435740:CDS 40.0%
CCCTGACTCATTATAAACAG+AGG - chr3_2:89071088-89071107 Msa0435740:intron 40.0%
CCCTCTGTTTATAATGAGTC+AGG + chr3_2:89071092-89071111 None:intergenic 40.0%
TTTAGATGAGAAAGGGCAAC+AGG - chr3_2:89071226-89071245 Msa0435740:intron 40.0%
ACTGTACAATAGACCCACAA+TGG + chr3_2:89071293-89071312 None:intergenic 40.0%
AAGAATGGAAGTCTTGCAGT+TGG + chr3_2:89071399-89071418 None:intergenic 40.0%
GCAAGGAAAGACTTCCAATT+TGG + chr3_2:89071441-89071460 None:intergenic 40.0%
TGAGACTACATCTGTAATGC+TGG - chr3_2:89071478-89071497 Msa0435740:intron 40.0%
AGTCACTAACTGCAACAAGA+TGG + chr3_2:89071504-89071523 None:intergenic 40.0%
! TAGATCAAGTGTTGTGCTGA+AGG - chr3_2:89071614-89071633 Msa0435740:intron 40.0%
!! GGCATGCTTTAGAATCATCT+TGG + chr3_2:89071698-89071717 None:intergenic 40.0%
GTTTCTTTCAATGTCAGAGC+TGG - chr3_2:89071929-89071948 Msa0435740:intron 40.0%
TTCTTTCAATGTCAGAGCTG+GGG - chr3_2:89071931-89071950 Msa0435740:intron 40.0%
ACATCTTAGAGCAAGTGGTT+CGG + chr3_2:89072082-89072101 None:intergenic 40.0%
CTACTGTACAATTATGCAGG+TGG + chr3_2:89072126-89072145 None:intergenic 40.0%
GCACTACAGAATAAAGTGGT+TGG + chr3_2:89072249-89072268 None:intergenic 40.0%
CCTAGCACTACAGAATAAAG+TGG + chr3_2:89072253-89072272 None:intergenic 40.0%
CCACTTTATTCTGTAGTGCT+AGG - chr3_2:89072250-89072269 Msa0435740:intron 40.0%
CTAATCTGTGTACAATCCCT+GGG + chr3_2:89072587-89072606 None:intergenic 40.0%
TCTAATCTGTGTACAATCCC+TGG + chr3_2:89072588-89072607 None:intergenic 40.0%
ATCATACGAAGCCGGTTATT+AGG + chr3_2:89072897-89072916 None:intergenic 40.0%
AGTTGAAAATCCCTTCTGTG+TGG - chr3_2:89073133-89073152 Msa0435740:CDS 40.0%
GTTAAATGGACCACACAGAA+GGG + chr3_2:89073146-89073165 None:intergenic 40.0%
AGTTAAATGGACCACACAGA+AGG + chr3_2:89073147-89073166 None:intergenic 40.0%
! GTAATTGAGATACTTGCTGG+GGG - chr3_2:89073485-89073504 Msa0435740:intron 40.0%
TTGAGTGGAAGTTGGAAACT+GGG - chr3_2:89073522-89073541 Msa0435740:intron 40.0%
TTTACCATCGGAGTAAAACG+TGG - chr3_2:89073638-89073657 Msa0435740:CDS 40.0%
AAAACGTGGCCAAATTTCCA+TGG - chr3_2:89073652-89073671 Msa0435740:CDS 40.0%
! AAAAGCATGCTGCAAAGTGT+TGG + chr3_2:89073719-89073738 None:intergenic 40.0%
GAGAGTCGAGAGGAAATAAA+TGG - chr3_2:89073762-89073781 Msa0435740:intron 40.0%
GTCGAGAGGAAATAAATGGA+AGG - chr3_2:89073766-89073785 Msa0435740:intron 40.0%
TAAATGGAAGGTTAGAGACG+TGG - chr3_2:89073778-89073797 Msa0435740:intron 40.0%
TTCAAGGAAGGTGGTTGAAA+TGG - chr3_2:89073995-89074014 Msa0435740:intron 40.0%
! AAAAAGGTACAACTCAAGCC+AGG - chr3_2:89074045-89074064 Msa0435740:intron 40.0%
! AAAAGGTACAACTCAAGCCA+GGG - chr3_2:89074046-89074065 Msa0435740:intron 40.0%
GTATGAGAGTGAGTGTTTGA+TGG - chr3_2:89074098-89074117 Msa0435740:intron 40.0%
GAATCTCAACCTAGATCGTT+TGG - chr3_2:89074257-89074276 Msa0435740:intron 40.0%
AAGGACCACTCAATCACTAA+AGG - chr3_2:89074332-89074351 Msa0435740:intron 40.0%
!! CAAGTCTTATTCCACTAGGT+GGG + chr3_2:89074486-89074505 None:intergenic 40.0%
!! TCAAGTCTTATTCCACTAGG+TGG + chr3_2:89074487-89074506 None:intergenic 40.0%
TAGGTGATGAGGTATATGGA+GGG - chr3_2:89074678-89074697 Msa0435740:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr3_2:89075184-89075203 Msa0435740:CDS 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr3_2:89075185-89075204 Msa0435740:CDS 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr3_2:89075202-89075221 None:intergenic 40.0%
ATTGCTTAACATGTGCCCTT+AGG + chr3_2:89075203-89075222 None:intergenic 40.0%
!! GCTCATTAACTTGTGCCTTA+AGG - chr3_2:89075324-89075343 Msa0435740:CDS 40.0%
AACACCGCAAAATCCACATG+AGG + chr3_2:89070299-89070318 None:intergenic 45.0%
! AGAAACGGATTTCGCAATGG+AGG + chr3_2:89070410-89070429 None:intergenic 45.0%
! GAAGAAATCGTCGACTACGA+CGG - chr3_2:89070493-89070512 Msa0435740:three_prime_UTR 45.0%
TACGACGGTGGAATCAAATC+TGG - chr3_2:89070508-89070527 Msa0435740:three_prime_UTR 45.0%
! CAATGGCCGTGTTGTTGATA+AGG - chr3_2:89070624-89070643 Msa0435740:CDS 45.0%
CCGCATTTAGAAGAGAAAGG+AGG + chr3_2:89070784-89070803 None:intergenic 45.0%
GTAACCCAGCCTCATAAACA+TGG - chr3_2:89070804-89070823 Msa0435740:intron 45.0%
! GGTTGGTTAGGAAGATCTAG+AGG - chr3_2:89070832-89070851 Msa0435740:intron 45.0%
! GATCTAGAGGGCATATCATC+TGG - chr3_2:89070845-89070864 Msa0435740:CDS 45.0%
GGCATATCATCTGGAGAAGA+AGG - chr3_2:89070854-89070873 Msa0435740:CDS 45.0%
CTGGAGAAGAAGGGTTAAGT+TGG - chr3_2:89070864-89070883 Msa0435740:CDS 45.0%
!! TTAAGTTGGCATGCCAACCT+AGG - chr3_2:89070878-89070897 Msa0435740:CDS 45.0%
ACATTAAAACCAGCCTGCCT+AGG + chr3_2:89070898-89070917 None:intergenic 45.0%
! GTCAGGGACTAATTTGTCCT+CGG + chr3_2:89071075-89071094 None:intergenic 45.0%
AGTTGTGCAGTGTGCACTAA+AGG + chr3_2:89071126-89071145 None:intergenic 45.0%
AACAAGAGCTATACAGCACC+AGG + chr3_2:89071255-89071274 None:intergenic 45.0%
! AGTCTAGGGCAAACCATTGT+GGG - chr3_2:89071277-89071296 Msa0435740:intron 45.0%
CTTGCAGTTGGCAAAGTGAT+AGG + chr3_2:89071387-89071406 None:intergenic 45.0%
CATTGTGGTGATACTTGAGC+AGG - chr3_2:89071907-89071926 Msa0435740:intron 45.0%
TTCGGAATTACCATGTGAGC+AGG + chr3_2:89072064-89072083 None:intergenic 45.0%
! ACGTCTGGGACACTTGTAAA+TGG - chr3_2:89072408-89072427 Msa0435740:intron 45.0%
CAACATTTGGCAGGTTGCAA+TGG + chr3_2:89072443-89072462 None:intergenic 45.0%
TCCCAGTCAAGTTCTTCTGA+AGG - chr3_2:89072528-89072547 Msa0435740:intron 45.0%
CCCTTCAGAAGAACTTGACT+GGG + chr3_2:89072532-89072551 None:intergenic 45.0%
CCCAGTCAAGTTCTTCTGAA+GGG - chr3_2:89072529-89072548 Msa0435740:intron 45.0%
ACCCTTCAGAAGAACTTGAC+TGG + chr3_2:89072533-89072552 None:intergenic 45.0%
! AGATTAGACAAAGGCACGAG+TGG - chr3_2:89072600-89072619 Msa0435740:intron 45.0%
! GATTAGACAAAGGCACGAGT+GGG - chr3_2:89072601-89072620 Msa0435740:intron 45.0%
TGGGTTACTAGTTGTCGCTA+AGG - chr3_2:89072620-89072639 Msa0435740:intron 45.0%
TCAAGCTACGCACTATCAAG+AGG - chr3_2:89072799-89072818 Msa0435740:CDS 45.0%
CAAGCTACGCACTATCAAGA+GGG - chr3_2:89072800-89072819 Msa0435740:CDS 45.0%
TTATTAGGATCACGGCCAAC+AGG + chr3_2:89072882-89072901 None:intergenic 45.0%
TTGGCCGTGATCCTAATAAC+CGG - chr3_2:89072883-89072902 Msa0435740:intron 45.0%
GAAGCCGGTTATTAGGATCA+CGG + chr3_2:89072890-89072909 None:intergenic 45.0%
TGCGGCTAGTAGGTGATTTA+TGG - chr3_2:89072956-89072975 Msa0435740:intron 45.0%
TGAGTGCAAACTATGGAGCA+TGG + chr3_2:89073219-89073238 None:intergenic 45.0%
!! TGCATTGGTTGAGTGGAAGT+TGG - chr3_2:89073514-89073533 Msa0435740:intron 45.0%
GTTGAGTGGAAGTTGGAAAC+TGG - chr3_2:89073521-89073540 Msa0435740:intron 45.0%
AATGTCCGGCCATGGAAATT+TGG + chr3_2:89073664-89073683 None:intergenic 45.0%
AAGGAAGGTGGTTGAAATGG+AGG - chr3_2:89073998-89074017 Msa0435740:intron 45.0%
AAGGTGGTTGAAATGGAGGA+GGG - chr3_2:89074002-89074021 Msa0435740:intron 45.0%
CACACATGACCAAACGATCT+AGG + chr3_2:89074269-89074288 None:intergenic 45.0%
CTAGATCGTTTGGTCATGTG+TGG - chr3_2:89074267-89074286 Msa0435740:intron 45.0%
ATGTTGTCAATCCCACCTAG+TGG - chr3_2:89074472-89074491 Msa0435740:intron 45.0%
! CAGAGGTACACCCAAATACT+TGG + chr3_2:89074657-89074676 None:intergenic 45.0%
TATTTGGGTGTACCTCTGCT+AGG - chr3_2:89074659-89074678 Msa0435740:intron 45.0%
TATACCTCATCACCTAGCAG+AGG + chr3_2:89074674-89074693 None:intergenic 45.0%
CTGCTAGGTGATGAGGTATA+TGG - chr3_2:89074674-89074693 Msa0435740:intron 45.0%
CTAGGTGATGAGGTATATGG+AGG - chr3_2:89074677-89074696 Msa0435740:intron 45.0%
ATATGGAGGGACGAAAAGCA+TGG - chr3_2:89074691-89074710 Msa0435740:intron 45.0%
!! GCATGGTCTTGTCATTGCTA+CGG - chr3_2:89074708-89074727 Msa0435740:intron 45.0%
AGAGTCAAAGCATGAAGGCA+AGG + chr3_2:89074794-89074813 None:intergenic 45.0%
TGCCTTCATGCTTTGACTCT+CGG - chr3_2:89074794-89074813 Msa0435740:intron 45.0%
! GGTTTGGTTCATTGTCGTGT+AGG - chr3_2:89074904-89074923 Msa0435740:intron 45.0%
AGGTTTCAGCATCCTCATAC+AGG - chr3_2:89074924-89074943 Msa0435740:intron 45.0%
GGTTTCAGCATCCTCATACA+GGG - chr3_2:89074925-89074944 Msa0435740:intron 45.0%
GTTTCAGCATCCTCATACAG+GGG - chr3_2:89074926-89074945 Msa0435740:intron 45.0%
TTGAGCCAGCTTCGTAGAAT+TGG - chr3_2:89074996-89075015 Msa0435740:intron 45.0%
CACTACCAATTCTACGAAGC+TGG + chr3_2:89075004-89075023 None:intergenic 45.0%
GTATGGTAAGAAGGCCAAAC+CGG + chr3_2:89075082-89075101 None:intergenic 45.0%
!!! ATATTACATTTTTAAAAAAT+TGG - chr3_2:89075139-89075158 Msa0435740:CDS 5.0%
!!! TATTACATTTTTAAAAAATT+GGG - chr3_2:89075140-89075159 Msa0435740:CDS 5.0%
CTCACTGGATAGAACTTCCG+CGG + chr3_2:89070248-89070267 None:intergenic 50.0%
CGGATTTCGCAATGGAGGAA+CGG + chr3_2:89070405-89070424 None:intergenic 50.0%
! ACGCCGGCGTAATTCGATTT+TGG + chr3_2:89070466-89070485 None:intergenic 50.0%
GCTGGACTCGTTCATGTCAA+TGG - chr3_2:89070607-89070626 Msa0435740:CDS 50.0%
TAAAACCAGCCTGCCTAGGT+TGG + chr3_2:89070894-89070913 None:intergenic 50.0%
! GAGTCTAGGGCAAACCATTG+TGG - chr3_2:89071276-89071295 Msa0435740:intron 50.0%
TGTGCCGGAAAACATACCTC+TGG - chr3_2:89071997-89072016 Msa0435740:intron 50.0%
! GTCTACGTTAGTCTCACTGC+CGG - chr3_2:89072822-89072841 Msa0435740:CDS 50.0%
! TCTACGTTAGTCTCACTGCC+GGG - chr3_2:89072823-89072842 Msa0435740:CDS 50.0%
AGAAACTGGAGTAGGTACCC+CGG + chr3_2:89072844-89072863 None:intergenic 50.0%
ACACGTCCAGAAACTGGAGT+AGG + chr3_2:89072852-89072871 None:intergenic 50.0%
! TCCAGTTTCTGGACGTGTTG+AGG - chr3_2:89072854-89072873 Msa0435740:CDS 50.0%
ACCTCAACACGTCCAGAAAC+TGG + chr3_2:89072858-89072877 None:intergenic 50.0%
CTACAGCGATCATACGAAGC+CGG + chr3_2:89072905-89072924 None:intergenic 50.0%
CTTCGTATGATCGCTGTAGC+TGG - chr3_2:89072906-89072925 Msa0435740:intron 50.0%
TTCTGTGAAAGCCCGTCATG+CGG - chr3_2:89072938-89072957 Msa0435740:intron 50.0%
ATCACCTACTAGCCGCATGA+CGG + chr3_2:89072953-89072972 None:intergenic 50.0%
!! GTAGCTGTGCATTGGTTGAG+TGG - chr3_2:89073507-89073526 Msa0435740:intron 50.0%
! GGTGCACTGCTGTTTACCAT+CGG - chr3_2:89073626-89073645 Msa0435740:CDS 50.0%
! TTGGCCACGTTTTACTCCGA+TGG + chr3_2:89073645-89073664 None:intergenic 50.0%
ATCTATGCAATGTCCGGCCA+TGG + chr3_2:89073672-89073691 None:intergenic 50.0%
TTCTTAGGTGGAGAGTCGAG+AGG - chr3_2:89073752-89073771 Msa0435740:intron 50.0%
GAAGGTGGTTGAAATGGAGG+AGG - chr3_2:89074001-89074020 Msa0435740:intron 50.0%
GATCGTTTGGTCATGTGTGG+AGG - chr3_2:89074270-89074289 Msa0435740:intron 50.0%
TCGTGCGCATGCCAAGTATT+TGG - chr3_2:89074643-89074662 Msa0435740:intron 50.0%
CGTGCGCATGCCAAGTATTT+GGG - chr3_2:89074644-89074663 Msa0435740:intron 50.0%
TGTACCTCTGCTAGGTGATG+AGG - chr3_2:89074667-89074686 Msa0435740:intron 50.0%
TGCAAACTCGGAGTTGTTCG+TGG + chr3_2:89074734-89074753 None:intergenic 50.0%
GCCTTCATGCTTTGACTCTC+GGG - chr3_2:89074795-89074814 Msa0435740:intron 50.0%
ACCCGAGAGTCAAAGCATGA+AGG + chr3_2:89074799-89074818 None:intergenic 50.0%
AATCGAATTACGCCGGCGTG+CGG - chr3_2:89070467-89070486 Msa0435740:intron 55.0%
GATTTCTTCCAACCGCACGC+CGG + chr3_2:89070482-89070501 None:intergenic 55.0%
! GAAATCGTCGACTACGACGG+TGG - chr3_2:89070496-89070515 Msa0435740:three_prime_UTR 55.0%
AGAAAGGGCAACAGGCAACC+TGG - chr3_2:89071234-89071253 Msa0435740:intron 55.0%
!! AGGTGCTGGATGCACAACCT+AGG + chr3_2:89072382-89072401 None:intergenic 55.0%
TAGGTTGTGCATCCAGCACC+TGG - chr3_2:89072381-89072400 Msa0435740:intron 55.0%
CAGCACCTGGCAATACGTCT+GGG - chr3_2:89072394-89072413 Msa0435740:intron 55.0%
AGTGTCCCAGACGTATTGCC+AGG + chr3_2:89072402-89072421 None:intergenic 55.0%
TCTGTGGCATCAATTCGCCC+AGG - chr3_2:89072567-89072586 Msa0435740:intron 55.0%
CTGTGGCATCAATTCGCCCA+GGG - chr3_2:89072568-89072587 Msa0435740:intron 55.0%
! CTACGTTAGTCTCACTGCCG+GGG - chr3_2:89072824-89072843 Msa0435740:CDS 55.0%
! GGGGTACCTACTCCAGTTTC+TGG - chr3_2:89072843-89072862 Msa0435740:CDS 55.0%
GGACGTGTTGAGGTTCCTGT+TGG - chr3_2:89072864-89072883 Msa0435740:CDS 55.0%
TCACCTACTAGCCGCATGAC+GGG + chr3_2:89072952-89072971 None:intergenic 55.0%
CGTGGCCAAATTTCCATGGC+CGG - chr3_2:89073656-89073675 Msa0435740:CDS 55.0%
GTTGGCATGCCAACCTAGGC+AGG - chr3_2:89070882-89070901 Msa0435740:CDS 60.0%
GCAGCAGTTGAGAGCTGTGC+CGG - chr3_2:89071982-89072001 Msa0435740:intron 60.0%
CCAGACGTATTGCCAGGTGC+TGG + chr3_2:89072396-89072415 None:intergenic 60.0%
CCAGCACCTGGCAATACGTC+TGG - chr3_2:89072393-89072412 Msa0435740:intron 60.0%
AAGCCCGTCATGCGGCTAGT+AGG - chr3_2:89072946-89072965 Msa0435740:intron 60.0%
TGCTGGGGGTAGCTGTGCAT+TGG - chr3_2:89073499-89073518 Msa0435740:intron 60.0%
GGAAACTGGGCGCACTCATC+AGG - chr3_2:89073535-89073554 Msa0435740:intron 60.0%
GCATCCTCATACAGGGGAGC+AGG - chr3_2:89074932-89074951 Msa0435740:intron 60.0%
TGCACCTGCTCCCCTGTATG+AGG + chr3_2:89074939-89074958 None:intergenic 60.0%
GAATTACGCCGGCGTGCGGT+TGG - chr3_2:89070471-89070490 Msa0435740:intron 65.0%
GCATGCCAACCTAGGCAGGC+TGG - chr3_2:89070886-89070905 Msa0435740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89070211 89075449 89070211 ID=Msa0435740;Name=Msa0435740
chr3_2 mRNA 89070211 89075449 89070211 ID=Msa0435740-mRNA-1;Parent=Msa0435740;Name=Msa0435740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|1|1|1|0.71|0.62|8|185|456
chr3_2 exon 89070211 89070288 89070211 ID=Msa0435740-mRNA-1:exon:26325;Parent=Msa0435740-mRNA-1
chr3_2 exon 89070483 89070734 89070483 ID=Msa0435740-mRNA-1:exon:26324;Parent=Msa0435740-mRNA-1
chr3_2 exon 89070844 89071019 89070844 ID=Msa0435740-mRNA-1:exon:26323;Parent=Msa0435740-mRNA-1
chr3_2 exon 89072104 89072182 89072104 ID=Msa0435740-mRNA-1:exon:26322;Parent=Msa0435740-mRNA-1
chr3_2 exon 89072693 89072895 89072693 ID=Msa0435740-mRNA-1:exon:26321;Parent=Msa0435740-mRNA-1
chr3_2 exon 89073019 89073276 89073019 ID=Msa0435740-mRNA-1:exon:26320;Parent=Msa0435740-mRNA-1
chr3_2 exon 89073588 89073731 89073588 ID=Msa0435740-mRNA-1:exon:26319;Parent=Msa0435740-mRNA-1
chr3_2 exon 89075015 89075449 89075015 ID=Msa0435740-mRNA-1:exon:26318;Parent=Msa0435740-mRNA-1
chr3_2 five_prime_UTR 89075381 89075449 89075381 ID=Msa0435740-mRNA-1:five_prime_utr;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89075015 89075380 89075015 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89073588 89073731 89073588 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89073019 89073276 89073019 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89072693 89072895 89072693 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89072104 89072182 89072104 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89070844 89071019 89070844 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 CDS 89070590 89070734 89070590 ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1
chr3_2 three_prime_UTR 89070483 89070589 89070483 ID=Msa0435740-mRNA-1:three_prime_utr;Parent=Msa0435740-mRNA-1
chr3_2 three_prime_UTR 89070211 89070288 89070211 ID=Msa0435740-mRNA-1:three_prime_utr;Parent=Msa0435740-mRNA-1
Gene Sequence

>Msa0435740

ATGTTATCGCTTAACACCTCATGTGGATTTTGCGGTGTTTCCATAGCAACAAAAGCATTCCAATTTCACTTTCGAACTTCATCTTCACCATTTTACTTCTCTCCCATTAACAACTATAAATTCCGTTCCTCCATTGCGAAATCCGTTTCTACTTTCTTCGATGATTCAAACTCCAAAGGAGAACCAAAATCGAATTACGCCGGCGTGCGGTTGGAAGAAATCGTCGACTACGACGGTGGAATCAAATCTGGAAAATTGAGACTCGATAGTTGGATTTCTTCTCGCATCAATGGCATCAGTAGAGCTCGTGTCCAGTCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAATGTACGATTGCGGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTCTGGATATAGTTTATGAAGATGACCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGCAATACGTCTGGGACACTTGTAAATGGCATTCTGCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGAGGAAGCTCTTTCAGATACAGAAGAATCTGATGATGAACTTAATGGTTTCTCATCCCAGTCAAGTTCTTCTGAAGGGTTAGATTCTAGATTGTCTGTGGCATCAATTCGCCCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTCGCTAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACTATCAAGAGGGTCTACGTTAGTCTCACTGCCGGGGTACCTACTCCAGTTTCTGGACGTGTTGAGGTTCCTGTTGGCCGTGATCCTAATAACCGGCTTCGTATGATCGCTGTAGCTGGACTAGTTAATTCTGTGAAAGCCCGTCATGCGGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGGCGCACTCATCAGATTCGTGCGCATGCCAAGTATTTGGGTGTACCTCTGCTAGGTGATGAGGTATATGGAGGGACGAAAAGCATGGTCTTGTCATTGCTACGGCCACGAACAACTCCGAGTTTGCATAGCGAAATGTTTAAAACAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGTGAGCCCCCTGTAGATTTTAATGACATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAAAGTATTTCTCACTCAAAGGCCAAATTTTTAAAAGGGGTATTGTAA

Protein sequence

>Msa0435740

MLSLNTSCGFCGVSIATKAFQFHFRTSSSPFYFSPINNYKFRSSIAKSVSTFFDDSNSKGEPKSNYAGVRLEEIVDYDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEESDDELNGFSSQSSSSEGLDSRLSVASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSELDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFNDILSQLRRIGSESISHSKAKFLKGVL*