Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0435740 | XP_003603819.2 | 95.405 | 457 | 19 | 2 | 1 | 456 | 1 | 456 | 0.0 | 870 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0435740 | sp|Q3ECD0|PUS2_ARATH | 66.754 | 382 | 110 | 3 | 62 | 440 | 62 | 429 | 2.01e-177 | 506 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0435740 | G7J5V2 | 95.405 | 457 | 19 | 2 | 1 | 456 | 1 | 456 | 0.0 | 870 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0076550 | Msa0435740 | 0.822944 | 1.806609e-53 | -8.615850e-47 |
Msa0190400 | Msa0435740 | 0.822637 | 2.129826e-53 | -8.615850e-47 |
Msa0418790 | Msa0435740 | 0.818360 | 2.041400e-52 | -8.615850e-47 |
Msa0420280 | Msa0435740 | 0.828628 | 8.088119e-55 | -8.615850e-47 |
Msa0435740 | Msa0479640 | 0.950857 | 6.907893e-109 | -8.615850e-47 |
Msa0435740 | Msa0522870 | 0.963777 | 1.675553e-122 | -8.615850e-47 |
Msa0435740 | Msa0528870 | 0.806007 | 1.013665e-49 | -8.615850e-47 |
Msa0435740 | Msa0848720 | 0.803722 | 3.044546e-49 | -8.615850e-47 |
Msa0435740 | Msa0980980 | 0.804174 | 2.451713e-49 | -8.615850e-47 |
Msa0435740 | Msa1011060 | 0.810832 | 9.475072e-51 | -8.615850e-47 |
Msa0435740 | Msa1038040 | 0.809685 | 1.674382e-50 | -8.615850e-47 |
Msa0435740 | Msa1052600 | 0.813885 | 2.040528e-51 | -8.615850e-47 |
Msa0435740 | Msa1068110 | 0.830196 | 3.364930e-55 | -8.615850e-47 |
Msa0435740 | Msa1093250 | 0.810416 | 1.165479e-50 | -8.615850e-47 |
Msa0435740 | Msa1106830 | 0.802808 | 4.706823e-49 | -8.615850e-47 |
Msa0435740 | Msa1150250 | 0.837545 | 4.878394e-57 | -8.615850e-47 |
Msa0435740 | Msa1296930 | 0.801297 | 9.622913e-49 | -8.615850e-47 |
Msa0435740 | Msa1308010 | 0.800234 | 1.585650e-48 | -8.615850e-47 |
Msa0435740 | Msa1335210 | 0.805749 | 1.148554e-49 | -8.615850e-47 |
Msa0435740 | Msa1376510 | 0.807654 | 4.548540e-50 | -8.615850e-47 |
Msa0435740 | Msa1376590 | 0.827990 | 1.152506e-54 | -8.615850e-47 |
Msa0435740 | Msa1444070 | 0.822044 | 2.924067e-53 | -8.615850e-47 |
Msa0273550 | Msa0435740 | 0.843118 | 1.705208e-58 | -8.615850e-47 |
Msa0290590 | Msa0435740 | 0.804989 | 1.657861e-49 | -8.615850e-47 |
Msa0311130 | Msa0435740 | 0.805842 | 1.098248e-49 | -8.615850e-47 |
Msa0319720 | Msa0435740 | 0.801365 | 9.320357e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0435740 | MtrunA17_Chr3g0143321 | 95.405 | 457 | 19 | 2 | 1 | 456 | 1 | 456 | 0.0 | 870 |
Msa0435740 | MtrunA17_Chr1g0200011 | 25.148 | 338 | 177 | 10 | 108 | 417 | 54 | 343 | 1.33e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0435740 | AT1G76050.2 | 66.754 | 382 | 110 | 3 | 62 | 440 | 62 | 429 | 2.04e-178 | 506 |
Msa0435740 | AT1G76050.1 | 66.165 | 266 | 73 | 3 | 62 | 324 | 62 | 313 | 1.60e-114 | 339 |
Msa0435740 | AT3G52260.4 | 26.165 | 279 | 149 | 7 | 108 | 368 | 56 | 295 | 1.27e-16 | 81.3 |
Msa0435740 | AT3G52260.2 | 26.071 | 280 | 148 | 7 | 108 | 368 | 56 | 295 | 3.77e-16 | 80.1 |
Find 126 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGCCGGCGTAATTCGATTT+TGG | 0.204182 | 3_2:+89075175 | None:intergenic |
TCGTGCGCATGCCAAGTATT+TGG | 0.214985 | 3_2:-89070995 | Msa0435740:CDS |
ACGGAATTTATAGTTGTTAA+TGG | 0.217365 | 3_2:+89075255 | None:intergenic |
GAATCTGATGATGAACTTAA+TGG | 0.254410 | 3_2:-89073140 | Msa0435740:CDS |
ATGAAGTTCGAAAGTGAAAT+TGG | 0.259397 | 3_2:+89075299 | None:intergenic |
GGGGTACCTACTCCAGTTTC+TGG | 0.276248 | 3_2:-89072795 | Msa0435740:CDS |
ATCATACGAAGCCGGTTATT+AGG | 0.304094 | 3_2:+89072744 | None:intergenic |
ACGTCTGGGACACTTGTAAA+TGG | 0.307453 | 3_2:-89073230 | Msa0435740:CDS |
TGCCTTCATGCTTTGACTCT+CGG | 0.309092 | 3_2:-89070844 | Msa0435740:CDS |
CGTGCGCATGCCAAGTATTT+GGG | 0.328224 | 3_2:-89070994 | Msa0435740:CDS |
CGGAATTTATAGTTGTTAAT+GGG | 0.336983 | 3_2:+89075256 | None:intergenic |
AAAGAAATGTTAAAGAAGTA+TGG | 0.351082 | 3_2:+89070542 | None:intergenic |
ACCTCAACACGTCCAGAAAC+TGG | 0.356510 | 3_2:+89072783 | None:intergenic |
GCCTTCATGCTTTGACTCTC+GGG | 0.373527 | 3_2:-89070843 | Msa0435740:intron |
CTGCTAGGTGATGAGGTATA+TGG | 0.375337 | 3_2:-89070964 | Msa0435740:CDS |
AAAGTAATTGAGATACTTGC+TGG | 0.384759 | 3_2:-89072156 | Msa0435740:CDS |
AAACAGTTTCTGAGCTAGAT+AGG | 0.391798 | 3_2:-89070870 | Msa0435740:CDS |
TTGAGCCAGCTTCGTAGAAT+TGG | 0.391980 | 3_2:-89070642 | Msa0435740:CDS |
AAAATGTCATTAAAATCTAC+AGG | 0.393988 | 3_2:+89070663 | None:intergenic |
TCTTTAGAAAATTCAACATT+TGG | 0.398853 | 3_2:+89073185 | None:intergenic |
GTTGAGTGGAAGTTGGAAAC+TGG | 0.401765 | 3_2:-89072117 | Msa0435740:CDS |
TTGTAATTTGTAAGCCGGTT+TGG | 0.406008 | 3_2:-89070573 | Msa0435740:exon |
TCTAATCTGTGTACAATCCC+TGG | 0.409587 | 3_2:+89073053 | None:intergenic |
GAAAATTGAGACTCGATAGT+TGG | 0.424427 | 3_2:-89075108 | Msa0435740:CDS |
GGAAACTGGGCGCACTCATC+AGG | 0.428189 | 3_2:-89072103 | Msa0435740:intron |
TTAATGGGAGAGAAGTAAAA+TGG | 0.431537 | 3_2:+89075271 | None:intergenic |
CCAGCACCTGGCAATACGTC+TGG | 0.433660 | 3_2:-89073245 | Msa0435740:CDS |
TAGAAAATTCAACATTTGGC+AGG | 0.440551 | 3_2:+89073189 | None:intergenic |
TGGATTTCTTCTCGCATCAA+TGG | 0.441664 | 3_2:-89075088 | Msa0435740:CDS |
AGGTTTCAGCATCCTCATAC+AGG | 0.447372 | 3_2:-89070714 | Msa0435740:CDS |
GTTTCTTTCAATGTCAGAGC+TGG | 0.450108 | 3_2:-89073709 | Msa0435740:CDS |
CAGAGGTACACCCAAATACT+TGG | 0.452967 | 3_2:+89070984 | None:intergenic |
CTTCGTATGATCGCTGTAGC+TGG | 0.457054 | 3_2:-89072732 | Msa0435740:CDS |
TACGACGGTGGAATCAAATC+TGG | 0.460914 | 3_2:-89075130 | Msa0435740:CDS |
CACTACCAATTCTACGAAGC+TGG | 0.462868 | 3_2:+89070637 | None:intergenic |
GTCTACGTTAGTCTCACTGC+CGG | 0.477724 | 3_2:-89072816 | Msa0435740:CDS |
TTATTAGGATCACGGCCAAC+AGG | 0.479835 | 3_2:+89072759 | None:intergenic |
TTCGGAATTACCATGTGAGC+AGG | 0.484681 | 3_2:+89073577 | None:intergenic |
CAACATTTGGCAGGTTGCAA+TGG | 0.489674 | 3_2:+89073198 | None:intergenic |
ACCCTTCAGAAGAACTTGAC+TGG | 0.494113 | 3_2:+89073108 | None:intergenic |
GGGTATTGTAATTTGTAAGC+CGG | 0.495438 | 3_2:-89070578 | Msa0435740:exon |
TTTCTTTCAATGTCAGAGCT+GGG | 0.495851 | 3_2:-89073708 | Msa0435740:CDS |
GAATTACGCCGGCGTGCGGT+TGG | 0.496847 | 3_2:-89075167 | Msa0435740:CDS |
TTGGCCGTGATCCTAATAAC+CGG | 0.497077 | 3_2:-89072755 | Msa0435740:CDS |
TGCATTGGTTGAGTGGAAGT+TGG | 0.497604 | 3_2:-89072124 | Msa0435740:CDS |
TCCAGTTTCTGGACGTGTTG+AGG | 0.498584 | 3_2:-89072784 | Msa0435740:CDS |
GTTAAAGAAGTATGGTAAGA+AGG | 0.498862 | 3_2:+89070550 | None:intergenic |
GCTGGACTCGTTCATGTCAA+TGG | 0.501112 | 3_2:-89075031 | Msa0435740:CDS |
TCACCTACTAGCCGCATGAC+GGG | 0.501679 | 3_2:+89072689 | None:intergenic |
AACATTTCGCTATGCAAACT+CGG | 0.501751 | 3_2:+89070895 | None:intergenic |
GTAGCTGTGCATTGGTTGAG+TGG | 0.505625 | 3_2:-89072131 | Msa0435740:CDS |
CAATGGCCGTGTTGTTGATA+AGG | 0.509560 | 3_2:-89075014 | Msa0435740:intron |
GCAGCAGTTGAGAGCTGTGC+CGG | 0.509649 | 3_2:-89073656 | Msa0435740:CDS |
CATAAATAAACCTGCTCACA+TGG | 0.510867 | 3_2:-89073587 | Msa0435740:intron |
TCTACGTTAGTCTCACTGCC+GGG | 0.511350 | 3_2:-89072815 | Msa0435740:CDS |
GTATGGTAAGAAGGCCAAAC+CGG | 0.512644 | 3_2:+89070559 | None:intergenic |
GTTTATTTATGACTAGCAAA+TGG | 0.513827 | 3_2:+89073599 | None:intergenic |
AGTGTCCCAGACGTATTGCC+AGG | 0.521402 | 3_2:+89073239 | None:intergenic |
GTCCAGTCAAGTATTAAAGC+TGG | 0.521976 | 3_2:-89075049 | Msa0435740:CDS |
GAAATCGTCGACTACGACGG+TGG | 0.522087 | 3_2:-89075142 | Msa0435740:CDS |
CGGATTTCGCAATGGAGGAA+CGG | 0.524552 | 3_2:+89075236 | None:intergenic |
GCATCCTCATACAGGGGAGC+AGG | 0.525403 | 3_2:-89070706 | Msa0435740:CDS |
TGCAAACTCGGAGTTGTTCG+TGG | 0.526136 | 3_2:+89070907 | None:intergenic |
TCCCAGTCAAGTTCTTCTGA+AGG | 0.527724 | 3_2:-89073110 | Msa0435740:CDS |
GTCCAGCTTTAATACTTGAC+TGG | 0.528396 | 3_2:+89075047 | None:intergenic |
CCCTTCAGAAGAACTTGACT+GGG | 0.529961 | 3_2:+89073109 | None:intergenic |
AAGCCCGTCATGCGGCTAGT+AGG | 0.531246 | 3_2:-89072692 | Msa0435740:intron |
ATCATCGAAGAAAGTAGAAA+CGG | 0.535644 | 3_2:+89075216 | None:intergenic |
TGCACCTGCTCCCCTGTATG+AGG | 0.537559 | 3_2:+89070702 | None:intergenic |
TTCGATGATTCAAACTCCAA+AGG | 0.541777 | 3_2:-89075202 | Msa0435740:CDS |
TTATCGCTTAACACCTCATG+TGG | 0.549398 | 3_2:-89075355 | Msa0435740:CDS |
TAGGTTGTGCATCCAGCACC+TGG | 0.549682 | 3_2:-89073257 | Msa0435740:CDS |
CCAGACGTATTGCCAGGTGC+TGG | 0.551763 | 3_2:+89073245 | None:intergenic |
CTAATCTGTGTACAATCCCT+GGG | 0.557086 | 3_2:+89073054 | None:intergenic |
CCCAGTCAAGTTCTTCTGAA+GGG | 0.559475 | 3_2:-89073109 | Msa0435740:CDS |
GGACGTGTTGAGGTTCCTGT+TGG | 0.563398 | 3_2:-89072774 | Msa0435740:CDS |
TGGGTTACTAGTTGTCGCTA+AGG | 0.563661 | 3_2:-89073018 | Msa0435740:intron |
TGTACCTCTGCTAGGTGATG+AGG | 0.565230 | 3_2:-89070971 | Msa0435740:CDS |
CATTTCACGATAATACTCAC+TGG | 0.569644 | 3_2:+89075378 | None:intergenic |
TGAAAGTATTTCTCACTCAA+AGG | 0.574310 | 3_2:-89070616 | Msa0435740:CDS |
GGTTTCAGCATCCTCATACA+GGG | 0.574635 | 3_2:-89070713 | Msa0435740:CDS |
AAGTAATTGAGATACTTGCT+GGG | 0.576544 | 3_2:-89072155 | Msa0435740:CDS |
CAGCACCTGGCAATACGTCT+GGG | 0.578291 | 3_2:-89073244 | Msa0435740:CDS |
TGTGCCGGAAAACATACCTC+TGG | 0.579322 | 3_2:-89073641 | Msa0435740:CDS |
TCTGTGGCATCAATTCGCCC+AGG | 0.579381 | 3_2:-89073071 | Msa0435740:CDS |
GCATGGTCTTGTCATTGCTA+CGG | 0.579433 | 3_2:-89070930 | Msa0435740:CDS |
AGATTAGACAAAGGCACGAG+TGG | 0.588012 | 3_2:-89073038 | Msa0435740:CDS |
ATCACCTACTAGCCGCATGA+CGG | 0.592873 | 3_2:+89072688 | None:intergenic |
TTCTTTCAATGTCAGAGCTG+GGG | 0.593498 | 3_2:-89073707 | Msa0435740:CDS |
CTAGGTGATGAGGTATATGG+AGG | 0.595073 | 3_2:-89070961 | Msa0435740:CDS |
TATTTGGGTGTACCTCTGCT+AGG | 0.595506 | 3_2:-89070979 | Msa0435740:CDS |
GTTTCAGCATCCTCATACAG+GGG | 0.596383 | 3_2:-89070712 | Msa0435740:CDS |
CTGTGGCATCAATTCGCCCA+GGG | 0.600609 | 3_2:-89073070 | Msa0435740:CDS |
AAATGTCATTAAAATCTACA+GGG | 0.601078 | 3_2:+89070664 | None:intergenic |
GTTAGATTCTAGATTGTCTG+TGG | 0.602572 | 3_2:-89073087 | Msa0435740:CDS |
ACCCGAGAGTCAAAGCATGA+AGG | 0.607294 | 3_2:+89070842 | None:intergenic |
TTCTGTGAAAGCCCGTCATG+CGG | 0.607595 | 3_2:-89072700 | Msa0435740:CDS |
TTGAGTGGAAGTTGGAAACT+GGG | 0.615139 | 3_2:-89072116 | Msa0435740:CDS |
AGAGTCAAAGCATGAAGGCA+AGG | 0.615312 | 3_2:+89070847 | None:intergenic |
TCAAGCTACGCACTATCAAG+AGG | 0.626322 | 3_2:-89072839 | Msa0435740:CDS |
AGTAGAAACGGATTTCGCAA+TGG | 0.630315 | 3_2:+89075228 | None:intergenic |
GAAGAAATCGTCGACTACGA+CGG | 0.630430 | 3_2:-89075145 | Msa0435740:CDS |
AATCGAATTACGCCGGCGTG+CGG | 0.637848 | 3_2:-89075171 | Msa0435740:CDS |
CAAGCTACGCACTATCAAGA+GGG | 0.647303 | 3_2:-89072838 | Msa0435740:CDS |
GATTAGACAAAGGCACGAGT+GGG | 0.651038 | 3_2:-89073037 | Msa0435740:CDS |
AGTAATTGAGATACTTGCTG+GGG | 0.652006 | 3_2:-89072154 | Msa0435740:CDS |
CTACAGCGATCATACGAAGC+CGG | 0.657140 | 3_2:+89072736 | None:intergenic |
AGAAACGGATTTCGCAATGG+AGG | 0.657913 | 3_2:+89075231 | None:intergenic |
ATATGGAGGGACGAAAAGCA+TGG | 0.659140 | 3_2:-89070947 | Msa0435740:CDS |
GAACCAAAATCGAATTACGC+CGG | 0.662494 | 3_2:-89075178 | Msa0435740:CDS |
CTCACTGGATAGAACTTCCG+CGG | 0.665478 | 3_2:+89075393 | None:intergenic |
TGAGATCAAATGTACGATTG+CGG | 0.665499 | 3_2:-89073683 | Msa0435740:CDS |
GAAGCCGGTTATTAGGATCA+CGG | 0.679316 | 3_2:+89072751 | None:intergenic |
GATTTCTTCCAACCGCACGC+CGG | 0.680238 | 3_2:+89075159 | None:intergenic |
ACACGTCCAGAAACTGGAGT+AGG | 0.683054 | 3_2:+89072789 | None:intergenic |
TCTTCATAAACTATATCCAG+AGG | 0.684572 | 3_2:+89073625 | None:intergenic |
CTACGTTAGTCTCACTGCCG+GGG | 0.686770 | 3_2:-89072814 | Msa0435740:CDS |
AGAAACTGGAGTAGGTACCC+CGG | 0.688257 | 3_2:+89072797 | None:intergenic |
TAGGTGATGAGGTATATGGA+GGG | 0.689938 | 3_2:-89070960 | Msa0435740:CDS |
ATGTCATTAAAATCTACAGG+GGG | 0.696305 | 3_2:+89070666 | None:intergenic |
AATGTCATTAAAATCTACAG+GGG | 0.696801 | 3_2:+89070665 | None:intergenic |
AACACCGCAAAATCCACATG+AGG | 0.697166 | 3_2:+89075342 | None:intergenic |
TATACCTCATCACCTAGCAG+AGG | 0.705895 | 3_2:+89070967 | None:intergenic |
AGACTACCTTATCAACAACA+CGG | 0.706446 | 3_2:+89075008 | None:intergenic |
ATTGTACACAGATTAGACAA+AGG | 0.708980 | 3_2:-89073047 | Msa0435740:CDS |
GTAATTGAGATACTTGCTGG+GGG | 0.718933 | 3_2:-89072153 | Msa0435740:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTAATATTGAATTATATT+AGG | - | chr3_2:89073010-89073029 | Msa0435740:intron | 10.0% |
!! | TAATATTACATATTACATTT+GGG | - | chr3_2:89073367-89073386 | Msa0435740:intron | 10.0% |
!! | AAATATTAAAATAGATTTAG+AGG | - | chr3_2:89074393-89074412 | Msa0435740:intron | 10.0% |
!!! | GTAATATTTTAATCAATAAT+GGG | + | chr3_2:89075126-89075145 | None:intergenic | 10.0% |
!!! | TGTAATATTTTAATCAATAA+TGG | + | chr3_2:89075127-89075146 | None:intergenic | 10.0% |
!! | ATCATTTAAATATTCAAGAA+TGG | + | chr3_2:89071414-89071433 | None:intergenic | 15.0% |
!!! | AAATATTTTGAGTATAATAG+TGG | - | chr3_2:89071578-89071597 | Msa0435740:intron | 15.0% |
!! | ATATTACATATATTTAGCAA+TGG | + | chr3_2:89073353-89073372 | None:intergenic | 15.0% |
!! | GTAATATTACATATTACATT+TGG | - | chr3_2:89073366-89073385 | Msa0435740:intron | 15.0% |
!!! | GTTTTCATATATTATATCTT+AGG | + | chr3_2:89073840-89073859 | None:intergenic | 15.0% |
!! | TTAGAAGATATTATAAGTTT+AGG | + | chr3_2:89074599-89074618 | None:intergenic | 15.0% |
!!! | GGAAATCATAATTTTTTTTA+GGG | - | chr3_2:89075161-89075180 | Msa0435740:CDS | 15.0% |
!! | CACTTTAATTGATAAAAAAA+AGG | + | chr3_2:89075367-89075386 | None:intergenic | 15.0% |
!!! | ATTACTACGAATTTTCTATT+TGG | - | chr3_2:89070706-89070725 | Msa0435740:CDS | 20.0% |
!!! | AATAAATAAATGCTCACTTT+TGG | + | chr3_2:89070979-89070998 | None:intergenic | 20.0% |
!! | ATAAATATATTCTAGGTCTA+GGG | + | chr3_2:89071719-89071738 | None:intergenic | 20.0% |
!! | AAATAACCAAACAAAAAACT+GGG | + | chr3_2:89071746-89071765 | None:intergenic | 20.0% |
!!! | ATTTTCATTCTAGATTACTT+AGG | - | chr3_2:89071838-89071857 | Msa0435740:intron | 20.0% |
!!! | AATACTTGATGATTAAATTC+AGG | - | chr3_2:89072210-89072229 | Msa0435740:intron | 20.0% |
!!! | TCTTTAGAAAATTCAACATT+TGG | + | chr3_2:89072456-89072475 | None:intergenic | 20.0% |
!!! | AAATGTTGAATTTTCTAAAG+AGG | - | chr3_2:89072455-89072474 | Msa0435740:intron | 20.0% |
!! | TTTGAGAAGTTTATTCAAAA+TGG | - | chr3_2:89073396-89073415 | Msa0435740:intron | 20.0% |
!! | TTTACAGATAATGTATTCTT+AGG | - | chr3_2:89073737-89073756 | Msa0435740:intron | 20.0% |
!! | TTACATAGTTTAAACATCTT+AGG | - | chr3_2:89073924-89073943 | Msa0435740:intron | 20.0% |
!! | AAGTGTTTCATGTAATAAAA+AGG | - | chr3_2:89074029-89074048 | Msa0435740:intron | 20.0% |
!!! | TTTCTTACTAAAGAACTTTT+AGG | + | chr3_2:89074299-89074318 | None:intergenic | 20.0% |
!! | TAAAAGTTCTTTAGTAAGAA+AGG | - | chr3_2:89074298-89074317 | Msa0435740:intron | 20.0% |
!! | AAATGTCATTAAAATCTACA+GGG | + | chr3_2:89074977-89074996 | None:intergenic | 20.0% |
!! | AAAATGTCATTAAAATCTAC+AGG | + | chr3_2:89074978-89074997 | None:intergenic | 20.0% |
!! | AAAGAAATGTTAAAGAAGTA+TGG | + | chr3_2:89075099-89075118 | None:intergenic | 20.0% |
!!! | GGGAAATCATAATTTTTTTT+AGG | - | chr3_2:89075160-89075179 | Msa0435740:CDS | 20.0% |
! | CGGAATTTATAGTTGTTAAT+GGG | + | chr3_2:89070385-89070404 | None:intergenic | 25.0% |
! | ACGGAATTTATAGTTGTTAA+TGG | + | chr3_2:89070386-89070405 | None:intergenic | 25.0% |
!! | ATATATCCCTTGTTTATTTG+TGG | - | chr3_2:89071172-89071191 | Msa0435740:intron | 25.0% |
! | TTCGAATATTTAGATGAGAA+AGG | - | chr3_2:89071218-89071237 | Msa0435740:intron | 25.0% |
! | TCGAATATTTAGATGAGAAA+GGG | - | chr3_2:89071219-89071238 | Msa0435740:intron | 25.0% |
! | CATAAATATATTCTAGGTCT+AGG | + | chr3_2:89071720-89071739 | None:intergenic | 25.0% |
! | GGGATACATAAATATATTCT+AGG | + | chr3_2:89071726-89071745 | None:intergenic | 25.0% |
! | GAAATAACCAAACAAAAAAC+TGG | + | chr3_2:89071747-89071766 | None:intergenic | 25.0% |
!! | TGTTTGGTTATTTCATCAAT+TGG | - | chr3_2:89071753-89071772 | Msa0435740:intron | 25.0% |
!! | ATTTATGATTTGCAAACAAG+AGG | + | chr3_2:89071818-89071837 | None:intergenic | 25.0% |
! | TAGATTACTTAGGTTCTTTA+AGG | - | chr3_2:89071848-89071867 | Msa0435740:intron | 25.0% |
! | GTTTATTTATGACTAGCAAA+TGG | + | chr3_2:89072042-89072061 | None:intergenic | 25.0% |
!! | AGAAATTTTCAGAAGGAAAA+GGG | - | chr3_2:89072308-89072327 | Msa0435740:intron | 25.0% |
!! | TGAATTATATTAGGTGCTTT+TGG | - | chr3_2:89073019-89073038 | Msa0435740:CDS | 25.0% |
! | ATAAATGTGTACACAAATGT+TGG | + | chr3_2:89073110-89073129 | None:intergenic | 25.0% |
!! | GTTTTATATCAACTGCTTAA+TGG | - | chr3_2:89073418-89073437 | Msa0435740:intron | 25.0% |
! | AATCTTAGAGAAATCCTAAT+TGG | - | chr3_2:89073572-89073591 | Msa0435740:intron | 25.0% |
!!! | TAAGACAACTTTTGTTTGAA+TGG | - | chr3_2:89073813-89073832 | Msa0435740:intron | 25.0% |
! | TGTTTAAACTATGTAACTTG+TGG | + | chr3_2:89073920-89073939 | None:intergenic | 25.0% |
! | AGGTCAAATGTTAAAAAAGA+TGG | - | chr3_2:89073944-89073963 | Msa0435740:intron | 25.0% |
! | AGATGTAAACATTTGATTCA+AGG | - | chr3_2:89073979-89073998 | Msa0435740:intron | 25.0% |
! | TTTATTACATGAAACACTTG+AGG | + | chr3_2:89074028-89074047 | None:intergenic | 25.0% |
! | AATGTCATTAAAATCTACAG+GGG | + | chr3_2:89074976-89074995 | None:intergenic | 25.0% |
!! | TCAAAGGCCAAATTTTTAAA+AGG | - | chr3_2:89075038-89075057 | Msa0435740:CDS | 25.0% |
!!! | CAAAGGCCAAATTTTTAAAA+GGG | - | chr3_2:89075039-89075058 | Msa0435740:CDS | 25.0% |
!!! | AAAGGCCAAATTTTTAAAAG+GGG | - | chr3_2:89075040-89075059 | Msa0435740:CDS | 25.0% |
!!! | CAATACCCCTTTTAAAAATT+TGG | + | chr3_2:89075048-89075067 | None:intergenic | 25.0% |
ATGAAGTTCGAAAGTGAAAT+TGG | + | chr3_2:89070342-89070361 | None:intergenic | 30.0% | |
TTAATGGGAGAGAAGTAAAA+TGG | + | chr3_2:89070370-89070389 | None:intergenic | 30.0% | |
ATCATCGAAGAAAGTAGAAA+CGG | + | chr3_2:89070425-89070444 | None:intergenic | 30.0% | |
GTAGTAATTAGAGAACTTGT+AGG | + | chr3_2:89070694-89070713 | None:intergenic | 30.0% | |
AACCAAAATCCATGTTTATG+AGG | + | chr3_2:89070816-89070835 | None:intergenic | 30.0% | |
!! | TCATAAACATGGATTTTGGT+TGG | - | chr3_2:89070815-89070834 | Msa0435740:intron | 30.0% |
GTGATGAGTTAACTAATAGA+AGG | + | chr3_2:89070929-89070948 | None:intergenic | 30.0% | |
CAGAGATCCATTAATATCAA+TGG | - | chr3_2:89070953-89070972 | Msa0435740:CDS | 30.0% | |
! | CTTTTGGCCATTGATATTAA+TGG | + | chr3_2:89070963-89070982 | None:intergenic | 30.0% |
AAATTGTGAAGGACCAAATT+GGG | + | chr3_2:89071048-89071067 | None:intergenic | 30.0% | |
AAAATTGTGAAGGACCAAAT+TGG | + | chr3_2:89071049-89071068 | None:intergenic | 30.0% | |
AAATCCAGATCATTCAATCT+TGG | - | chr3_2:89071148-89071167 | Msa0435740:intron | 30.0% | |
TATTCCAAGATTGAATGATC+TGG | + | chr3_2:89071155-89071174 | None:intergenic | 30.0% | |
AACTGACCACAAATAAACAA+GGG | + | chr3_2:89071181-89071200 | None:intergenic | 30.0% | |
TCATATATTGCATTTGCAAG+AGG | - | chr3_2:89071312-89071331 | Msa0435740:intron | 30.0% | |
TTTAAATGATGCACCCAAAT+TGG | - | chr3_2:89071424-89071443 | Msa0435740:intron | 30.0% | |
TTTGAGAACTACCATTACTT+AGG | - | chr3_2:89071523-89071542 | Msa0435740:intron | 30.0% | |
ACCATTACTTAGGACATTTA+AGG | - | chr3_2:89071533-89071552 | Msa0435740:intron | 30.0% | |
!! | TACTTTTCGAACAAGTATTG+TGG | + | chr3_2:89071658-89071677 | None:intergenic | 30.0% |
!!! | ATGTATCCCAGTTTTTTGTT+TGG | - | chr3_2:89071737-89071756 | Msa0435740:intron | 30.0% |
GCTCAACTACAAATTAAGAA+AGG | + | chr3_2:89071888-89071907 | None:intergenic | 30.0% | |
! | TAATTTGTAGTTGAGCATTG+TGG | - | chr3_2:89071892-89071911 | Msa0435740:intron | 30.0% |
TCTTCATAAACTATATCCAG+AGG | + | chr3_2:89072016-89072035 | None:intergenic | 30.0% | |
AAATAACATCTTAGAGCAAG+TGG | + | chr3_2:89072087-89072106 | None:intergenic | 30.0% | |
TATCTACTGTACAATTATGC+AGG | + | chr3_2:89072129-89072148 | None:intergenic | 30.0% | |
! | CAGAAATTTTCAGAAGGAAA+AGG | - | chr3_2:89072307-89072326 | Msa0435740:intron | 30.0% |
TAGAAAATTCAACATTTGGC+AGG | + | chr3_2:89072452-89072471 | None:intergenic | 30.0% | |
! | GAATCTGATGATGAACTTAA+TGG | - | chr3_2:89072498-89072517 | Msa0435740:intron | 30.0% |
ATTGTACACAGATTAGACAA+AGG | - | chr3_2:89072591-89072610 | Msa0435740:intron | 30.0% | |
TATCAAGGCATACAAATACT+GGG | + | chr3_2:89072741-89072760 | None:intergenic | 30.0% | |
ATATCAAGGCATACAAATAC+TGG | + | chr3_2:89072742-89072761 | None:intergenic | 30.0% | |
TATTTGTATGCCTTGATATC+AGG | - | chr3_2:89072743-89072762 | Msa0435740:CDS | 30.0% | |
CCTACAGGTTAAAAGTTAAA+TGG | + | chr3_2:89073160-89073179 | None:intergenic | 30.0% | |
!! | CCATTTAACTTTTAACCTGT+AGG | - | chr3_2:89073157-89073176 | Msa0435740:CDS | 30.0% |
TTTATAAGCTAATGACCTAC+AGG | + | chr3_2:89073175-89073194 | None:intergenic | 30.0% | |
!! | TTTTAAGTGAGTGCAAACTA+TGG | + | chr3_2:89073226-89073245 | None:intergenic | 30.0% |
! | AAAGTTGATTACTAACTGTC+AGG | - | chr3_2:89073456-89073475 | Msa0435740:intron | 30.0% |
AAAGTAATTGAGATACTTGC+TGG | - | chr3_2:89073482-89073501 | Msa0435740:intron | 30.0% | |
AAGTAATTGAGATACTTGCT+GGG | - | chr3_2:89073483-89073502 | Msa0435740:intron | 30.0% | |
ACAACAAGATTATGCCAATT+AGG | + | chr3_2:89073589-89073608 | None:intergenic | 30.0% | |
TTGTAAGTGAGAGAACTAAA+GGG | - | chr3_2:89073605-89073624 | Msa0435740:CDS | 30.0% | |
ACATTGCATAGATGTACTAA+CGG | - | chr3_2:89073679-89073698 | Msa0435740:CDS | 30.0% | |
ACAGATAATGTATTCTTAGG+TGG | - | chr3_2:89073740-89073759 | Msa0435740:intron | 30.0% | |
AAGAAAAAACCCTAGCTTAA+AGG | - | chr3_2:89073871-89073890 | Msa0435740:intron | 30.0% | |
! | CAACTTTTACCTTTAAGCTA+GGG | + | chr3_2:89073883-89073902 | None:intergenic | 30.0% |
! | ATGTAACTTGTGGTATTGTA+TGG | + | chr3_2:89073910-89073929 | None:intergenic | 30.0% |
TAAAAAAGATGGAGAAACAG+AGG | - | chr3_2:89073955-89073974 | Msa0435740:intron | 30.0% | |
AAAAAAGATGGAGAAACAGA+GGG | - | chr3_2:89073956-89073975 | Msa0435740:intron | 30.0% | |
GTAAACATTTGATTCAAGGA+AGG | - | chr3_2:89073983-89074002 | Msa0435740:intron | 30.0% | |
GAATGAGTGAAAATACTACA+CGG | - | chr3_2:89074174-89074193 | Msa0435740:intron | 30.0% | |
AATGAGTGAAAATACTACAC+GGG | - | chr3_2:89074175-89074194 | Msa0435740:intron | 30.0% | |
TTAGCATTCAAGCAATAGTT+GGG | - | chr3_2:89074213-89074232 | Msa0435740:intron | 30.0% | |
TGGGTCTATTGTGTAAAAAT+TGG | - | chr3_2:89074232-89074251 | Msa0435740:intron | 30.0% | |
AAGAAAGGTAGATTAGATCA+AGG | - | chr3_2:89074313-89074332 | Msa0435740:intron | 30.0% | |
TAGGCTTTACTATATTACAG+TGG | + | chr3_2:89074580-89074599 | None:intergenic | 30.0% | |
ATAACTTCGTAGCTAAACTT+TGG | - | chr3_2:89074837-89074856 | Msa0435740:intron | 30.0% | |
! | ATGACAATTGATAGCACTAT+TGG | - | chr3_2:89074883-89074902 | Msa0435740:intron | 30.0% |
! | AATTGATAGCACTATTGGTT+TGG | - | chr3_2:89074888-89074907 | Msa0435740:intron | 30.0% |
ATGTCATTAAAATCTACAGG+GGG | + | chr3_2:89074975-89074994 | None:intergenic | 30.0% | |
!! | TGAAAGTATTTCTCACTCAA+AGG | - | chr3_2:89075022-89075041 | Msa0435740:CDS | 30.0% |
! | GTTAAAGAAGTATGGTAAGA+AGG | + | chr3_2:89075091-89075110 | None:intergenic | 30.0% |
! | CACCAAATTATTTCCACTTT+TGG | - | chr3_2:89075302-89075321 | Msa0435740:CDS | 30.0% |
AGCCAAAAGTGGAAATAATT+TGG | + | chr3_2:89075307-89075326 | None:intergenic | 30.0% | |
! | AAGTTTTCATTTCAAAGCCG+CGG | - | chr3_2:89070228-89070247 | Msa0435740:three_prime_UTR | 35.0% |
CATTTCACGATAATACTCAC+TGG | + | chr3_2:89070263-89070282 | None:intergenic | 35.0% | |
! | TTGGAATGCTTTTGTTGCTA+TGG | + | chr3_2:89070323-89070342 | None:intergenic | 35.0% |
TTCGATGATTCAAACTCCAA+AGG | - | chr3_2:89070436-89070455 | Msa0435740:intron | 35.0% | |
!!! | ATTCGATTTTGGTTCTCCTT+TGG | + | chr3_2:89070455-89070474 | None:intergenic | 35.0% |
GAAAATTGAGACTCGATAGT+TGG | - | chr3_2:89070530-89070549 | Msa0435740:three_prime_UTR | 35.0% | |
AGACTACCTTATCAACAACA+CGG | + | chr3_2:89070633-89070652 | None:intergenic | 35.0% | |
CAAATTCGGAACAGTTGAAA+TGG | + | chr3_2:89070669-89070688 | None:intergenic | 35.0% | |
AGAACTTGTAGGCACAAATT+CGG | + | chr3_2:89070683-89070702 | None:intergenic | 35.0% | |
AAATCCATGTTTATGAGGCT+GGG | + | chr3_2:89070811-89070830 | None:intergenic | 35.0% | |
AAAATCCATGTTTATGAGGC+TGG | + | chr3_2:89070812-89070831 | None:intergenic | 35.0% | |
! | AGCCTCATAAACATGGATTT+TGG | - | chr3_2:89070811-89070830 | Msa0435740:intron | 35.0% |
!!! | AACATGGATTTTGGTTGGTT+AGG | - | chr3_2:89070820-89070839 | Msa0435740:intron | 35.0% |
! | TTTAGAGTGAAGACCCAATT+TGG | - | chr3_2:89071032-89071051 | Msa0435740:intron | 35.0% |
! | TCCTTCACAATTTTATACCG+AGG | - | chr3_2:89071055-89071074 | Msa0435740:intron | 35.0% |
TCCTCGGTATAAAATTGTGA+AGG | + | chr3_2:89071059-89071078 | None:intergenic | 35.0% | |
CCTCTGTTTATAATGAGTCA+GGG | + | chr3_2:89071091-89071110 | None:intergenic | 35.0% | |
CCTGACTCATTATAAACAGA+GGG | - | chr3_2:89071089-89071108 | Msa0435740:intron | 35.0% | |
CTCATTATAAACAGAGGGAT+TGG | - | chr3_2:89071094-89071113 | Msa0435740:intron | 35.0% | |
GAACTGACCACAAATAAACA+AGG | + | chr3_2:89071182-89071201 | None:intergenic | 35.0% | |
! | TATAGCTCTTGTTTGAGTCT+AGG | - | chr3_2:89071262-89071281 | Msa0435740:intron | 35.0% |
! | ATAGCTCTTGTTTGAGTCTA+GGG | - | chr3_2:89071263-89071282 | Msa0435740:intron | 35.0% |
GAAGTCATAGATTCAAGTCA+TGG | + | chr3_2:89071344-89071363 | None:intergenic | 35.0% | |
CAAGGAAAGACTTCCAATTT+GGG | + | chr3_2:89071440-89071459 | None:intergenic | 35.0% | |
!! | ACTAGGAGATTATTTCTGCA+AGG | + | chr3_2:89071458-89071477 | None:intergenic | 35.0% |
TTACAGATGTAGTCTCAACT+AGG | + | chr3_2:89071475-89071494 | None:intergenic | 35.0% | |
GCCTTAAATGTCCTAAGTAA+TGG | + | chr3_2:89071537-89071556 | None:intergenic | 35.0% | |
TTTCTTTCAATGTCAGAGCT+GGG | - | chr3_2:89071930-89071949 | Msa0435740:intron | 35.0% | |
TGAGATCAAATGTACGATTG+CGG | - | chr3_2:89071955-89071974 | Msa0435740:intron | 35.0% | |
!! | ATATCCAGAGGTATGTTTTC+CGG | + | chr3_2:89072004-89072023 | None:intergenic | 35.0% |
CATAAATAAACCTGCTCACA+TGG | - | chr3_2:89072051-89072070 | Msa0435740:intron | 35.0% | |
!!! | AGATAGTGCGACACTTTTTT+TGG | - | chr3_2:89072144-89072163 | Msa0435740:CDS | 35.0% |
! | CCTTCTGAAAATTTCTGACA+TGG | + | chr3_2:89072304-89072323 | None:intergenic | 35.0% |
! | CCATGTCAGAAATTTTCAGA+AGG | - | chr3_2:89072301-89072320 | Msa0435740:intron | 35.0% |
CATTATATGCTCTTCAACCT+AGG | - | chr3_2:89072362-89072381 | Msa0435740:intron | 35.0% | |
GTTAGATTCTAGATTGTCTG+TGG | - | chr3_2:89072551-89072570 | Msa0435740:intron | 35.0% | |
GAATGTTCATCCTGATATCA+AGG | + | chr3_2:89072756-89072775 | None:intergenic | 35.0% | |
! | AGTAATTGAGATACTTGCTG+GGG | - | chr3_2:89073484-89073503 | Msa0435740:intron | 35.0% |
GTTGTAAGTGAGAGAACTAA+AGG | - | chr3_2:89073604-89073623 | Msa0435740:CDS | 35.0% | |
TAGTACATCTATGCAATGTC+CGG | + | chr3_2:89073678-89073697 | None:intergenic | 35.0% | |
!!! | AGCTAGGGTTTTTTCTTCTT+TGG | + | chr3_2:89073868-89073887 | None:intergenic | 35.0% |
! | CCAACTTTTACCTTTAAGCT+AGG | + | chr3_2:89073884-89073903 | None:intergenic | 35.0% |
CCTAGCTTAAAGGTAAAAGT+TGG | - | chr3_2:89073881-89073900 | Msa0435740:intron | 35.0% | |
AACATTTGATTCAAGGAAGG+TGG | - | chr3_2:89073986-89074005 | Msa0435740:intron | 35.0% | |
TTGATCGATAAAATGTTCCC+TGG | + | chr3_2:89074066-89074085 | None:intergenic | 35.0% | |
ATACTACACGGGATATGATT+AGG | - | chr3_2:89074186-89074205 | Msa0435740:intron | 35.0% | |
GTTAGCATTCAAGCAATAGT+TGG | - | chr3_2:89074212-89074231 | Msa0435740:intron | 35.0% | |
! | TTTTGCCTTTAGTGATTGAG+TGG | + | chr3_2:89074340-89074359 | None:intergenic | 35.0% |
CAATCACTAAAGGCAAAAGA+AGG | - | chr3_2:89074342-89074361 | Msa0435740:intron | 35.0% | |
AGATTTAGAGGACAATGCTT+TGG | - | chr3_2:89074405-89074424 | Msa0435740:intron | 35.0% | |
!! | AGATCAAGTCTTATTCCACT+AGG | + | chr3_2:89074490-89074509 | None:intergenic | 35.0% |
AACATTTCGCTATGCAAACT+CGG | + | chr3_2:89074746-89074765 | None:intergenic | 35.0% | |
AAACAGTTTCTGAGCTAGAT+AGG | - | chr3_2:89074768-89074787 | Msa0435740:intron | 35.0% | |
! | GGGTATTGTAATTTGTAAGC+CGG | - | chr3_2:89075060-89075079 | Msa0435740:CDS | 35.0% |
! | TTGTAATTTGTAAGCCGGTT+TGG | - | chr3_2:89075065-89075084 | Msa0435740:CDS | 35.0% |
ACAAGTTAATGAGCCAAAAG+TGG | + | chr3_2:89075318-89075337 | None:intergenic | 35.0% | |
!! | CTCATTAACTTGTGCCTTAA+GGG | - | chr3_2:89075325-89075344 | Msa0435740:CDS | 35.0% |
!! | AATGTTAACTTGTGCCCTTA+AGG | + | chr3_2:89075342-89075361 | None:intergenic | 35.0% |
TTATCGCTTAACACCTCATG+TGG | - | chr3_2:89070283-89070302 | Msa0435740:intron | 40.0% | |
! | AACACCTCATGTGGATTTTG+CGG | - | chr3_2:89070292-89070311 | Msa0435740:intron | 40.0% |
! | AGTAGAAACGGATTTCGCAA+TGG | + | chr3_2:89070413-89070432 | None:intergenic | 40.0% |
GAACCAAAATCGAATTACGC+CGG | - | chr3_2:89070460-89070479 | Msa0435740:intron | 40.0% | |
TGGATTTCTTCTCGCATCAA+TGG | - | chr3_2:89070550-89070569 | Msa0435740:three_prime_UTR | 40.0% | |
GTCCAGTCAAGTATTAAAGC+TGG | - | chr3_2:89070589-89070608 | Msa0435740:exon | 40.0% | |
! | GTCCAGCTTTAATACTTGAC+TGG | + | chr3_2:89070594-89070613 | None:intergenic | 40.0% |
CCTCCTTTCTCTTCTAAATG+CGG | - | chr3_2:89070781-89070800 | Msa0435740:intron | 40.0% | |
CTCCTTTCTCTTCTAAATGC+GGG | - | chr3_2:89070782-89070801 | Msa0435740:intron | 40.0% | |
TACCCGCATTTAGAAGAGAA+AGG | + | chr3_2:89070787-89070806 | None:intergenic | 40.0% | |
GTTGGTTAGGAAGATCTAGA+GGG | - | chr3_2:89070833-89070852 | Msa0435740:intron | 40.0% | |
GCATATCATCTGGAGAAGAA+GGG | - | chr3_2:89070855-89070874 | Msa0435740:CDS | 40.0% | |
!!! | GGCTGGTTTTAATGTGTATG+TGG | - | chr3_2:89070903-89070922 | Msa0435740:CDS | 40.0% |
CCCTGACTCATTATAAACAG+AGG | - | chr3_2:89071088-89071107 | Msa0435740:intron | 40.0% | |
CCCTCTGTTTATAATGAGTC+AGG | + | chr3_2:89071092-89071111 | None:intergenic | 40.0% | |
TTTAGATGAGAAAGGGCAAC+AGG | - | chr3_2:89071226-89071245 | Msa0435740:intron | 40.0% | |
ACTGTACAATAGACCCACAA+TGG | + | chr3_2:89071293-89071312 | None:intergenic | 40.0% | |
AAGAATGGAAGTCTTGCAGT+TGG | + | chr3_2:89071399-89071418 | None:intergenic | 40.0% | |
GCAAGGAAAGACTTCCAATT+TGG | + | chr3_2:89071441-89071460 | None:intergenic | 40.0% | |
TGAGACTACATCTGTAATGC+TGG | - | chr3_2:89071478-89071497 | Msa0435740:intron | 40.0% | |
AGTCACTAACTGCAACAAGA+TGG | + | chr3_2:89071504-89071523 | None:intergenic | 40.0% | |
! | TAGATCAAGTGTTGTGCTGA+AGG | - | chr3_2:89071614-89071633 | Msa0435740:intron | 40.0% |
!! | GGCATGCTTTAGAATCATCT+TGG | + | chr3_2:89071698-89071717 | None:intergenic | 40.0% |
GTTTCTTTCAATGTCAGAGC+TGG | - | chr3_2:89071929-89071948 | Msa0435740:intron | 40.0% | |
TTCTTTCAATGTCAGAGCTG+GGG | - | chr3_2:89071931-89071950 | Msa0435740:intron | 40.0% | |
ACATCTTAGAGCAAGTGGTT+CGG | + | chr3_2:89072082-89072101 | None:intergenic | 40.0% | |
CTACTGTACAATTATGCAGG+TGG | + | chr3_2:89072126-89072145 | None:intergenic | 40.0% | |
GCACTACAGAATAAAGTGGT+TGG | + | chr3_2:89072249-89072268 | None:intergenic | 40.0% | |
CCTAGCACTACAGAATAAAG+TGG | + | chr3_2:89072253-89072272 | None:intergenic | 40.0% | |
CCACTTTATTCTGTAGTGCT+AGG | - | chr3_2:89072250-89072269 | Msa0435740:intron | 40.0% | |
CTAATCTGTGTACAATCCCT+GGG | + | chr3_2:89072587-89072606 | None:intergenic | 40.0% | |
TCTAATCTGTGTACAATCCC+TGG | + | chr3_2:89072588-89072607 | None:intergenic | 40.0% | |
ATCATACGAAGCCGGTTATT+AGG | + | chr3_2:89072897-89072916 | None:intergenic | 40.0% | |
AGTTGAAAATCCCTTCTGTG+TGG | - | chr3_2:89073133-89073152 | Msa0435740:CDS | 40.0% | |
GTTAAATGGACCACACAGAA+GGG | + | chr3_2:89073146-89073165 | None:intergenic | 40.0% | |
AGTTAAATGGACCACACAGA+AGG | + | chr3_2:89073147-89073166 | None:intergenic | 40.0% | |
! | GTAATTGAGATACTTGCTGG+GGG | - | chr3_2:89073485-89073504 | Msa0435740:intron | 40.0% |
TTGAGTGGAAGTTGGAAACT+GGG | - | chr3_2:89073522-89073541 | Msa0435740:intron | 40.0% | |
TTTACCATCGGAGTAAAACG+TGG | - | chr3_2:89073638-89073657 | Msa0435740:CDS | 40.0% | |
AAAACGTGGCCAAATTTCCA+TGG | - | chr3_2:89073652-89073671 | Msa0435740:CDS | 40.0% | |
! | AAAAGCATGCTGCAAAGTGT+TGG | + | chr3_2:89073719-89073738 | None:intergenic | 40.0% |
GAGAGTCGAGAGGAAATAAA+TGG | - | chr3_2:89073762-89073781 | Msa0435740:intron | 40.0% | |
GTCGAGAGGAAATAAATGGA+AGG | - | chr3_2:89073766-89073785 | Msa0435740:intron | 40.0% | |
TAAATGGAAGGTTAGAGACG+TGG | - | chr3_2:89073778-89073797 | Msa0435740:intron | 40.0% | |
TTCAAGGAAGGTGGTTGAAA+TGG | - | chr3_2:89073995-89074014 | Msa0435740:intron | 40.0% | |
! | AAAAAGGTACAACTCAAGCC+AGG | - | chr3_2:89074045-89074064 | Msa0435740:intron | 40.0% |
! | AAAAGGTACAACTCAAGCCA+GGG | - | chr3_2:89074046-89074065 | Msa0435740:intron | 40.0% |
GTATGAGAGTGAGTGTTTGA+TGG | - | chr3_2:89074098-89074117 | Msa0435740:intron | 40.0% | |
GAATCTCAACCTAGATCGTT+TGG | - | chr3_2:89074257-89074276 | Msa0435740:intron | 40.0% | |
AAGGACCACTCAATCACTAA+AGG | - | chr3_2:89074332-89074351 | Msa0435740:intron | 40.0% | |
!! | CAAGTCTTATTCCACTAGGT+GGG | + | chr3_2:89074486-89074505 | None:intergenic | 40.0% |
!! | TCAAGTCTTATTCCACTAGG+TGG | + | chr3_2:89074487-89074506 | None:intergenic | 40.0% |
TAGGTGATGAGGTATATGGA+GGG | - | chr3_2:89074678-89074697 | Msa0435740:intron | 40.0% | |
!! | TCATGTTAACTTGTGCCCTA+AGG | - | chr3_2:89075184-89075203 | Msa0435740:CDS | 40.0% |
!! | CATGTTAACTTGTGCCCTAA+GGG | - | chr3_2:89075185-89075204 | Msa0435740:CDS | 40.0% |
TTGCTTAACATGTGCCCTTA+GGG | + | chr3_2:89075202-89075221 | None:intergenic | 40.0% | |
ATTGCTTAACATGTGCCCTT+AGG | + | chr3_2:89075203-89075222 | None:intergenic | 40.0% | |
!! | GCTCATTAACTTGTGCCTTA+AGG | - | chr3_2:89075324-89075343 | Msa0435740:CDS | 40.0% |
AACACCGCAAAATCCACATG+AGG | + | chr3_2:89070299-89070318 | None:intergenic | 45.0% | |
! | AGAAACGGATTTCGCAATGG+AGG | + | chr3_2:89070410-89070429 | None:intergenic | 45.0% |
! | GAAGAAATCGTCGACTACGA+CGG | - | chr3_2:89070493-89070512 | Msa0435740:three_prime_UTR | 45.0% |
TACGACGGTGGAATCAAATC+TGG | - | chr3_2:89070508-89070527 | Msa0435740:three_prime_UTR | 45.0% | |
! | CAATGGCCGTGTTGTTGATA+AGG | - | chr3_2:89070624-89070643 | Msa0435740:CDS | 45.0% |
CCGCATTTAGAAGAGAAAGG+AGG | + | chr3_2:89070784-89070803 | None:intergenic | 45.0% | |
GTAACCCAGCCTCATAAACA+TGG | - | chr3_2:89070804-89070823 | Msa0435740:intron | 45.0% | |
! | GGTTGGTTAGGAAGATCTAG+AGG | - | chr3_2:89070832-89070851 | Msa0435740:intron | 45.0% |
! | GATCTAGAGGGCATATCATC+TGG | - | chr3_2:89070845-89070864 | Msa0435740:CDS | 45.0% |
GGCATATCATCTGGAGAAGA+AGG | - | chr3_2:89070854-89070873 | Msa0435740:CDS | 45.0% | |
CTGGAGAAGAAGGGTTAAGT+TGG | - | chr3_2:89070864-89070883 | Msa0435740:CDS | 45.0% | |
!! | TTAAGTTGGCATGCCAACCT+AGG | - | chr3_2:89070878-89070897 | Msa0435740:CDS | 45.0% |
ACATTAAAACCAGCCTGCCT+AGG | + | chr3_2:89070898-89070917 | None:intergenic | 45.0% | |
! | GTCAGGGACTAATTTGTCCT+CGG | + | chr3_2:89071075-89071094 | None:intergenic | 45.0% |
AGTTGTGCAGTGTGCACTAA+AGG | + | chr3_2:89071126-89071145 | None:intergenic | 45.0% | |
AACAAGAGCTATACAGCACC+AGG | + | chr3_2:89071255-89071274 | None:intergenic | 45.0% | |
! | AGTCTAGGGCAAACCATTGT+GGG | - | chr3_2:89071277-89071296 | Msa0435740:intron | 45.0% |
CTTGCAGTTGGCAAAGTGAT+AGG | + | chr3_2:89071387-89071406 | None:intergenic | 45.0% | |
CATTGTGGTGATACTTGAGC+AGG | - | chr3_2:89071907-89071926 | Msa0435740:intron | 45.0% | |
TTCGGAATTACCATGTGAGC+AGG | + | chr3_2:89072064-89072083 | None:intergenic | 45.0% | |
! | ACGTCTGGGACACTTGTAAA+TGG | - | chr3_2:89072408-89072427 | Msa0435740:intron | 45.0% |
CAACATTTGGCAGGTTGCAA+TGG | + | chr3_2:89072443-89072462 | None:intergenic | 45.0% | |
TCCCAGTCAAGTTCTTCTGA+AGG | - | chr3_2:89072528-89072547 | Msa0435740:intron | 45.0% | |
CCCTTCAGAAGAACTTGACT+GGG | + | chr3_2:89072532-89072551 | None:intergenic | 45.0% | |
CCCAGTCAAGTTCTTCTGAA+GGG | - | chr3_2:89072529-89072548 | Msa0435740:intron | 45.0% | |
ACCCTTCAGAAGAACTTGAC+TGG | + | chr3_2:89072533-89072552 | None:intergenic | 45.0% | |
! | AGATTAGACAAAGGCACGAG+TGG | - | chr3_2:89072600-89072619 | Msa0435740:intron | 45.0% |
! | GATTAGACAAAGGCACGAGT+GGG | - | chr3_2:89072601-89072620 | Msa0435740:intron | 45.0% |
TGGGTTACTAGTTGTCGCTA+AGG | - | chr3_2:89072620-89072639 | Msa0435740:intron | 45.0% | |
TCAAGCTACGCACTATCAAG+AGG | - | chr3_2:89072799-89072818 | Msa0435740:CDS | 45.0% | |
CAAGCTACGCACTATCAAGA+GGG | - | chr3_2:89072800-89072819 | Msa0435740:CDS | 45.0% | |
TTATTAGGATCACGGCCAAC+AGG | + | chr3_2:89072882-89072901 | None:intergenic | 45.0% | |
TTGGCCGTGATCCTAATAAC+CGG | - | chr3_2:89072883-89072902 | Msa0435740:intron | 45.0% | |
GAAGCCGGTTATTAGGATCA+CGG | + | chr3_2:89072890-89072909 | None:intergenic | 45.0% | |
TGCGGCTAGTAGGTGATTTA+TGG | - | chr3_2:89072956-89072975 | Msa0435740:intron | 45.0% | |
TGAGTGCAAACTATGGAGCA+TGG | + | chr3_2:89073219-89073238 | None:intergenic | 45.0% | |
!! | TGCATTGGTTGAGTGGAAGT+TGG | - | chr3_2:89073514-89073533 | Msa0435740:intron | 45.0% |
GTTGAGTGGAAGTTGGAAAC+TGG | - | chr3_2:89073521-89073540 | Msa0435740:intron | 45.0% | |
AATGTCCGGCCATGGAAATT+TGG | + | chr3_2:89073664-89073683 | None:intergenic | 45.0% | |
AAGGAAGGTGGTTGAAATGG+AGG | - | chr3_2:89073998-89074017 | Msa0435740:intron | 45.0% | |
AAGGTGGTTGAAATGGAGGA+GGG | - | chr3_2:89074002-89074021 | Msa0435740:intron | 45.0% | |
CACACATGACCAAACGATCT+AGG | + | chr3_2:89074269-89074288 | None:intergenic | 45.0% | |
CTAGATCGTTTGGTCATGTG+TGG | - | chr3_2:89074267-89074286 | Msa0435740:intron | 45.0% | |
ATGTTGTCAATCCCACCTAG+TGG | - | chr3_2:89074472-89074491 | Msa0435740:intron | 45.0% | |
! | CAGAGGTACACCCAAATACT+TGG | + | chr3_2:89074657-89074676 | None:intergenic | 45.0% |
TATTTGGGTGTACCTCTGCT+AGG | - | chr3_2:89074659-89074678 | Msa0435740:intron | 45.0% | |
TATACCTCATCACCTAGCAG+AGG | + | chr3_2:89074674-89074693 | None:intergenic | 45.0% | |
CTGCTAGGTGATGAGGTATA+TGG | - | chr3_2:89074674-89074693 | Msa0435740:intron | 45.0% | |
CTAGGTGATGAGGTATATGG+AGG | - | chr3_2:89074677-89074696 | Msa0435740:intron | 45.0% | |
ATATGGAGGGACGAAAAGCA+TGG | - | chr3_2:89074691-89074710 | Msa0435740:intron | 45.0% | |
!! | GCATGGTCTTGTCATTGCTA+CGG | - | chr3_2:89074708-89074727 | Msa0435740:intron | 45.0% |
AGAGTCAAAGCATGAAGGCA+AGG | + | chr3_2:89074794-89074813 | None:intergenic | 45.0% | |
TGCCTTCATGCTTTGACTCT+CGG | - | chr3_2:89074794-89074813 | Msa0435740:intron | 45.0% | |
! | GGTTTGGTTCATTGTCGTGT+AGG | - | chr3_2:89074904-89074923 | Msa0435740:intron | 45.0% |
AGGTTTCAGCATCCTCATAC+AGG | - | chr3_2:89074924-89074943 | Msa0435740:intron | 45.0% | |
GGTTTCAGCATCCTCATACA+GGG | - | chr3_2:89074925-89074944 | Msa0435740:intron | 45.0% | |
GTTTCAGCATCCTCATACAG+GGG | - | chr3_2:89074926-89074945 | Msa0435740:intron | 45.0% | |
TTGAGCCAGCTTCGTAGAAT+TGG | - | chr3_2:89074996-89075015 | Msa0435740:intron | 45.0% | |
CACTACCAATTCTACGAAGC+TGG | + | chr3_2:89075004-89075023 | None:intergenic | 45.0% | |
GTATGGTAAGAAGGCCAAAC+CGG | + | chr3_2:89075082-89075101 | None:intergenic | 45.0% | |
!!! | ATATTACATTTTTAAAAAAT+TGG | - | chr3_2:89075139-89075158 | Msa0435740:CDS | 5.0% |
!!! | TATTACATTTTTAAAAAATT+GGG | - | chr3_2:89075140-89075159 | Msa0435740:CDS | 5.0% |
CTCACTGGATAGAACTTCCG+CGG | + | chr3_2:89070248-89070267 | None:intergenic | 50.0% | |
CGGATTTCGCAATGGAGGAA+CGG | + | chr3_2:89070405-89070424 | None:intergenic | 50.0% | |
! | ACGCCGGCGTAATTCGATTT+TGG | + | chr3_2:89070466-89070485 | None:intergenic | 50.0% |
GCTGGACTCGTTCATGTCAA+TGG | - | chr3_2:89070607-89070626 | Msa0435740:CDS | 50.0% | |
TAAAACCAGCCTGCCTAGGT+TGG | + | chr3_2:89070894-89070913 | None:intergenic | 50.0% | |
! | GAGTCTAGGGCAAACCATTG+TGG | - | chr3_2:89071276-89071295 | Msa0435740:intron | 50.0% |
TGTGCCGGAAAACATACCTC+TGG | - | chr3_2:89071997-89072016 | Msa0435740:intron | 50.0% | |
! | GTCTACGTTAGTCTCACTGC+CGG | - | chr3_2:89072822-89072841 | Msa0435740:CDS | 50.0% |
! | TCTACGTTAGTCTCACTGCC+GGG | - | chr3_2:89072823-89072842 | Msa0435740:CDS | 50.0% |
AGAAACTGGAGTAGGTACCC+CGG | + | chr3_2:89072844-89072863 | None:intergenic | 50.0% | |
ACACGTCCAGAAACTGGAGT+AGG | + | chr3_2:89072852-89072871 | None:intergenic | 50.0% | |
! | TCCAGTTTCTGGACGTGTTG+AGG | - | chr3_2:89072854-89072873 | Msa0435740:CDS | 50.0% |
ACCTCAACACGTCCAGAAAC+TGG | + | chr3_2:89072858-89072877 | None:intergenic | 50.0% | |
CTACAGCGATCATACGAAGC+CGG | + | chr3_2:89072905-89072924 | None:intergenic | 50.0% | |
CTTCGTATGATCGCTGTAGC+TGG | - | chr3_2:89072906-89072925 | Msa0435740:intron | 50.0% | |
TTCTGTGAAAGCCCGTCATG+CGG | - | chr3_2:89072938-89072957 | Msa0435740:intron | 50.0% | |
ATCACCTACTAGCCGCATGA+CGG | + | chr3_2:89072953-89072972 | None:intergenic | 50.0% | |
!! | GTAGCTGTGCATTGGTTGAG+TGG | - | chr3_2:89073507-89073526 | Msa0435740:intron | 50.0% |
! | GGTGCACTGCTGTTTACCAT+CGG | - | chr3_2:89073626-89073645 | Msa0435740:CDS | 50.0% |
! | TTGGCCACGTTTTACTCCGA+TGG | + | chr3_2:89073645-89073664 | None:intergenic | 50.0% |
ATCTATGCAATGTCCGGCCA+TGG | + | chr3_2:89073672-89073691 | None:intergenic | 50.0% | |
TTCTTAGGTGGAGAGTCGAG+AGG | - | chr3_2:89073752-89073771 | Msa0435740:intron | 50.0% | |
GAAGGTGGTTGAAATGGAGG+AGG | - | chr3_2:89074001-89074020 | Msa0435740:intron | 50.0% | |
GATCGTTTGGTCATGTGTGG+AGG | - | chr3_2:89074270-89074289 | Msa0435740:intron | 50.0% | |
TCGTGCGCATGCCAAGTATT+TGG | - | chr3_2:89074643-89074662 | Msa0435740:intron | 50.0% | |
CGTGCGCATGCCAAGTATTT+GGG | - | chr3_2:89074644-89074663 | Msa0435740:intron | 50.0% | |
TGTACCTCTGCTAGGTGATG+AGG | - | chr3_2:89074667-89074686 | Msa0435740:intron | 50.0% | |
TGCAAACTCGGAGTTGTTCG+TGG | + | chr3_2:89074734-89074753 | None:intergenic | 50.0% | |
GCCTTCATGCTTTGACTCTC+GGG | - | chr3_2:89074795-89074814 | Msa0435740:intron | 50.0% | |
ACCCGAGAGTCAAAGCATGA+AGG | + | chr3_2:89074799-89074818 | None:intergenic | 50.0% | |
AATCGAATTACGCCGGCGTG+CGG | - | chr3_2:89070467-89070486 | Msa0435740:intron | 55.0% | |
GATTTCTTCCAACCGCACGC+CGG | + | chr3_2:89070482-89070501 | None:intergenic | 55.0% | |
! | GAAATCGTCGACTACGACGG+TGG | - | chr3_2:89070496-89070515 | Msa0435740:three_prime_UTR | 55.0% |
AGAAAGGGCAACAGGCAACC+TGG | - | chr3_2:89071234-89071253 | Msa0435740:intron | 55.0% | |
!! | AGGTGCTGGATGCACAACCT+AGG | + | chr3_2:89072382-89072401 | None:intergenic | 55.0% |
TAGGTTGTGCATCCAGCACC+TGG | - | chr3_2:89072381-89072400 | Msa0435740:intron | 55.0% | |
CAGCACCTGGCAATACGTCT+GGG | - | chr3_2:89072394-89072413 | Msa0435740:intron | 55.0% | |
AGTGTCCCAGACGTATTGCC+AGG | + | chr3_2:89072402-89072421 | None:intergenic | 55.0% | |
TCTGTGGCATCAATTCGCCC+AGG | - | chr3_2:89072567-89072586 | Msa0435740:intron | 55.0% | |
CTGTGGCATCAATTCGCCCA+GGG | - | chr3_2:89072568-89072587 | Msa0435740:intron | 55.0% | |
! | CTACGTTAGTCTCACTGCCG+GGG | - | chr3_2:89072824-89072843 | Msa0435740:CDS | 55.0% |
! | GGGGTACCTACTCCAGTTTC+TGG | - | chr3_2:89072843-89072862 | Msa0435740:CDS | 55.0% |
GGACGTGTTGAGGTTCCTGT+TGG | - | chr3_2:89072864-89072883 | Msa0435740:CDS | 55.0% | |
TCACCTACTAGCCGCATGAC+GGG | + | chr3_2:89072952-89072971 | None:intergenic | 55.0% | |
CGTGGCCAAATTTCCATGGC+CGG | - | chr3_2:89073656-89073675 | Msa0435740:CDS | 55.0% | |
GTTGGCATGCCAACCTAGGC+AGG | - | chr3_2:89070882-89070901 | Msa0435740:CDS | 60.0% | |
GCAGCAGTTGAGAGCTGTGC+CGG | - | chr3_2:89071982-89072001 | Msa0435740:intron | 60.0% | |
CCAGACGTATTGCCAGGTGC+TGG | + | chr3_2:89072396-89072415 | None:intergenic | 60.0% | |
CCAGCACCTGGCAATACGTC+TGG | - | chr3_2:89072393-89072412 | Msa0435740:intron | 60.0% | |
AAGCCCGTCATGCGGCTAGT+AGG | - | chr3_2:89072946-89072965 | Msa0435740:intron | 60.0% | |
TGCTGGGGGTAGCTGTGCAT+TGG | - | chr3_2:89073499-89073518 | Msa0435740:intron | 60.0% | |
GGAAACTGGGCGCACTCATC+AGG | - | chr3_2:89073535-89073554 | Msa0435740:intron | 60.0% | |
GCATCCTCATACAGGGGAGC+AGG | - | chr3_2:89074932-89074951 | Msa0435740:intron | 60.0% | |
TGCACCTGCTCCCCTGTATG+AGG | + | chr3_2:89074939-89074958 | None:intergenic | 60.0% | |
GAATTACGCCGGCGTGCGGT+TGG | - | chr3_2:89070471-89070490 | Msa0435740:intron | 65.0% | |
GCATGCCAACCTAGGCAGGC+TGG | - | chr3_2:89070886-89070905 | Msa0435740:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 89070211 | 89075449 | 89070211 | ID=Msa0435740;Name=Msa0435740 |
chr3_2 | mRNA | 89070211 | 89075449 | 89070211 | ID=Msa0435740-mRNA-1;Parent=Msa0435740;Name=Msa0435740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|1|1|1|0.71|0.62|8|185|456 |
chr3_2 | exon | 89070211 | 89070288 | 89070211 | ID=Msa0435740-mRNA-1:exon:26325;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89070483 | 89070734 | 89070483 | ID=Msa0435740-mRNA-1:exon:26324;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89070844 | 89071019 | 89070844 | ID=Msa0435740-mRNA-1:exon:26323;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89072104 | 89072182 | 89072104 | ID=Msa0435740-mRNA-1:exon:26322;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89072693 | 89072895 | 89072693 | ID=Msa0435740-mRNA-1:exon:26321;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89073019 | 89073276 | 89073019 | ID=Msa0435740-mRNA-1:exon:26320;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89073588 | 89073731 | 89073588 | ID=Msa0435740-mRNA-1:exon:26319;Parent=Msa0435740-mRNA-1 |
chr3_2 | exon | 89075015 | 89075449 | 89075015 | ID=Msa0435740-mRNA-1:exon:26318;Parent=Msa0435740-mRNA-1 |
chr3_2 | five_prime_UTR | 89075381 | 89075449 | 89075381 | ID=Msa0435740-mRNA-1:five_prime_utr;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89075015 | 89075380 | 89075015 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89073588 | 89073731 | 89073588 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89073019 | 89073276 | 89073019 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89072693 | 89072895 | 89072693 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89072104 | 89072182 | 89072104 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89070844 | 89071019 | 89070844 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | CDS | 89070590 | 89070734 | 89070590 | ID=Msa0435740-mRNA-1:cds;Parent=Msa0435740-mRNA-1 |
chr3_2 | three_prime_UTR | 89070483 | 89070589 | 89070483 | ID=Msa0435740-mRNA-1:three_prime_utr;Parent=Msa0435740-mRNA-1 |
chr3_2 | three_prime_UTR | 89070211 | 89070288 | 89070211 | ID=Msa0435740-mRNA-1:three_prime_utr;Parent=Msa0435740-mRNA-1 |
Gene Sequence |
Protein sequence |