AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1052600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1052600 MtrunA17_Chr7g0222751 88.333 240 4 3 1 216 1 240 2.78e-148 412
Msa1052600 MtrunA17_Chr1g0212681 33.508 191 104 3 48 216 45 234 6.46e-31 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1052600 AT3G55330.1 54.634 205 68 3 34 213 24 228 5.80e-69 211
Msa1052600 AT2G39470.1 34.615 182 95 3 57 216 59 238 4.36e-28 106
Msa1052600 AT2G39470.2 34.615 182 95 3 57 216 51 230 4.49e-28 106

Find 59 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAGGATATTAAAGAATT+TGG 0.087552 7_2:-21436028 Msa1052600:CDS
TAATATCCTGTTTGCTTGTT+GGG 0.249086 7_2:+21436038 None:intergenic
TTAATATCCTGTTTGCTTGT+TGG 0.307481 7_2:+21436037 None:intergenic
TATGGCAAACCCTTCTGTTT+AGG 0.320550 7_2:-21433743 Msa1052600:intron
CATACTGCATAACAGTAATA+TGG 0.342918 7_2:-21433761 Msa1052600:three_prime_UTR
AGAATTTGGGTCACCTGAAC+AGG 0.347867 7_2:-21436014 Msa1052600:intron
AACAGGATATTAAAGAATTT+GGG 0.349485 7_2:-21436027 Msa1052600:CDS
TATAAGCCTCTAACCTGTTC+AGG 0.373217 7_2:+21436001 None:intergenic
GTAATCAAACTTTGAAAAGT+TGG 0.397062 7_2:+21433945 None:intergenic
AAGGGATGCCATTGTTGGCT+TGG 0.406266 7_2:+21438469 None:intergenic
TGAAGTCTTTGTTGCAGTTA+TGG 0.408891 7_2:-21433819 Msa1052600:three_prime_UTR
TTCAATCTTACAAGAAATTG+AGG 0.413204 7_2:+21436810 None:intergenic
GAACTGTCATCTTCTTCAAC+AGG 0.413644 7_2:-21438245 Msa1052600:intron
CTGAAATCCTGTCTTATTAT+CGG 0.414796 7_2:+21436698 None:intergenic
TGCAGTTATGGTTGTTACTT+TGG 0.417638 7_2:-21433807 Msa1052600:three_prime_UTR
AGAGCATGTCGAGTGTAGTT+TGG 0.423846 7_2:+21434152 None:intergenic
CTTTCAGAACTCTTTCCCTC+AGG 0.433137 7_2:-21438417 Msa1052600:intron
TCAATTCGAGTTCGTTGCTC+AGG 0.443149 7_2:-21434177 Msa1052600:CDS
CCATCTTTCCTATCCACAAC+TGG 0.446635 7_2:+21436675 None:intergenic
CAGGAGCAAATGAGAGAAGA+TGG 0.450749 7_2:-21434009 Msa1052600:CDS
ACAACATGTAGGCAAGCAAA+GGG 0.459362 7_2:+21433417 None:intergenic
CTCATTTGCTCCTGTAGTCA+AGG 0.464935 7_2:+21434018 None:intergenic
AATGATCCCAACAAGCAAAC+AGG 0.474787 7_2:-21436044 Msa1052600:CDS
TCCAGGTAGCGTCATTCCTC+TGG 0.479059 7_2:-21433461 Msa1052600:intron
GTTTGTTCTATCTATGTGGT+TGG 0.482154 7_2:+21438535 Msa1052610:intron
AAGTTGGAAGGATTCTACTA+TGG 0.484592 7_2:+21433961 None:intergenic
TGTTCTATCTATGTGGTTGG+AGG 0.491332 7_2:+21438538 Msa1052610:intron
TATTGTTTGTTCTATCTATG+TGG 0.495684 7_2:+21438531 Msa1052610:intron
TCAATCTTACAAGAAATTGA+GGG 0.499708 7_2:+21436811 None:intergenic
CCAGTTGTGGATAGGAAAGA+TGG 0.501189 7_2:-21436675 Msa1052600:CDS
TGTCGCCAGCGTGAAATTGA+CGG 0.507223 7_2:-21434212 Msa1052600:intron
AAATATAATAAACTCTTCAT+CGG 0.507642 7_2:-21433901 Msa1052600:three_prime_UTR
GTTCTATTTACCTAAACAGA+AGG 0.507945 7_2:+21433733 None:intergenic
GCTCTCAGCGCAGTCTCCAT+TGG 0.509239 7_2:-21434134 Msa1052600:CDS
GTCTGAAGGGATGCCATTGT+TGG 0.514922 7_2:+21438464 None:intergenic
AGTGATTGAAGGTCAAGATA+AGG 0.519938 7_2:-21436110 Msa1052600:CDS
TCAAACTTTGAAAAGTTGGA+AGG 0.520854 7_2:+21433949 None:intergenic
GACAGGATTTCAGCCAGTTG+TGG 0.527616 7_2:-21436688 Msa1052600:CDS
GATTTCAGCCAGTTGTGGAT+AGG 0.527897 7_2:-21436683 Msa1052600:CDS
AGGAGCAAATGAGAGAAGAT+GGG 0.535543 7_2:-21434008 Msa1052600:CDS
TAGCTGCAATGGCAATTGCT+TGG 0.536048 7_2:+21436863 None:intergenic
GGGCAGGAAGTAGTGATTGA+AGG 0.544637 7_2:-21436121 Msa1052600:CDS
AACAACATGTAGGCAAGCAA+AGG 0.547194 7_2:+21433416 None:intergenic
CAAAACTATACCATTGCCAA+TGG 0.556022 7_2:+21434118 None:intergenic
TGCAAAATCCAAGCCAACAA+TGG 0.558415 7_2:-21438477 Msa1052600:exon
TCTTACAAGAAATTGAGGGT+TGG 0.559648 7_2:+21436815 None:intergenic
GGACATGAGAGGATAGGTTG+TGG 0.564414 7_2:-21438604 None:intergenic
TAATGGTGCAGTAGCTGCAA+TGG 0.569156 7_2:+21436852 None:intergenic
GTTGCCGCCGATAATAAGAC+AGG 0.584506 7_2:-21436705 Msa1052600:CDS
TTCTATTTACCTAAACAGAA+GGG 0.589934 7_2:+21433734 None:intergenic
AGCGCAGTCTCCATTGGCAA+TGG 0.595444 7_2:-21434128 Msa1052600:intron
AACATGTAGGCAAGCAAAGG+GGG 0.608948 7_2:+21433419 None:intergenic
GAAGTGTAGGTGAAGTCTGA+AGG 0.619544 7_2:+21438450 None:intergenic
GTGATTGTGTTGCAGAAGCA+TGG 0.631753 7_2:-21438332 Msa1052600:intron
AAGTGTAGGTGAAGTCTGAA+GGG 0.633332 7_2:+21438451 None:intergenic
AAGAGAGTTCTGTGAAGTGT+AGG 0.636649 7_2:+21438437 None:intergenic
GGAGCAAATGAGAGAAGATG+GGG 0.657624 7_2:-21434007 Msa1052600:CDS
AAATCCTGTCTTATTATCGG+CGG 0.658599 7_2:+21436701 None:intergenic
CAACATGTAGGCAAGCAAAG+GGG 0.661783 7_2:+21433418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAATCAC+AGG - chr7_2:21435756-21435775 Msa1052600:intron 10.0%
!! AAAAAAAAAAAAAAATCACA+GGG - chr7_2:21435757-21435776 Msa1052600:intron 10.0%
!! TTAAATCATTTATCAATAAA+AGG - chr7_2:21435824-21435843 Msa1052600:intron 10.0%
!! TTAAATTAAAAAGAACTATA+TGG - chr7_2:21438414-21438433 Msa1052600:intron 10.0%
!!! ATTTTAGTGATTAATTTGTT+CGG + chr7_2:21434581-21434600 None:intergenic 15.0%
!!! TTAAACATTCATTCTTTTAT+CGG + chr7_2:21434607-21434626 None:intergenic 15.0%
!!! ATTTGTTTTCAATAGAATTT+TGG - chr7_2:21434646-21434665 Msa1052600:intron 15.0%
!!! TTTGTTTTCAATAGAATTTT+GGG - chr7_2:21434647-21434666 Msa1052600:intron 15.0%
!! GTTAAAACATGTAAATTAAT+AGG + chr7_2:21435061-21435080 None:intergenic 15.0%
!!! TTTTAACCAAAAAATTAAAG+TGG + chr7_2:21437220-21437239 None:intergenic 15.0%
!! ATATTCAAATATACACAAAA+GGG + chr7_2:21437753-21437772 None:intergenic 15.0%
!! TATATTCAAATATACACAAA+AGG + chr7_2:21437754-21437773 None:intergenic 15.0%
!! AAATATAATAAACTCTTCAT+CGG - chr7_2:21438115-21438134 Msa1052600:intron 15.0%
!! ACACATTAAATATAAGTTAA+AGG + chr7_2:21438353-21438372 None:intergenic 15.0%
!!! TCTTTTTTTTCCTTTAAAAT+TGG - chr7_2:21438388-21438407 Msa1052600:intron 15.0%
!!! AATTTAAGAACCAATTTTAA+AGG + chr7_2:21438401-21438420 None:intergenic 15.0%
!! ATAGTATGTATTATGCAATA+TGG - chr7_2:21433851-21433870 Msa1052600:three_prime_UTR 20.0%
!!! TTTGATTCTTAAGTTTTCAA+GGG - chr7_2:21434289-21434308 Msa1052600:intron 20.0%
!!! TTTTAGTGATTAATTTGTTC+GGG + chr7_2:21434580-21434599 None:intergenic 20.0%
!!! ATATCATAAACCATCATTTT+TGG - chr7_2:21435496-21435515 Msa1052600:intron 20.0%
!! TTATCAATAAAAGGCTAAAA+TGG - chr7_2:21435833-21435852 Msa1052600:intron 20.0%
!! AAACAGGATATTAAAGAATT+TGG - chr7_2:21435988-21436007 Msa1052600:intron 20.0%
!! AACAGGATATTAAAGAATTT+GGG - chr7_2:21435989-21436008 Msa1052600:intron 20.0%
!!! CTTATTTTAAATTTGTTTGC+AGG - chr7_2:21436089-21436108 Msa1052600:CDS 20.0%
!! TTATAATGACATAAAAAGCA+AGG + chr7_2:21436209-21436228 None:intergenic 20.0%
!! TTAAATAAGACAATCCAAAT+AGG + chr7_2:21436946-21436965 None:intergenic 20.0%
!!! TAAGCTATTTCTATAACAAA+AGG + chr7_2:21437082-21437101 None:intergenic 20.0%
!!! TAATTAAATTGTTTCTCCAA+AGG - chr7_2:21437127-21437146 Msa1052600:intron 20.0%
!!! AATTAAATTGTTTCTCCAAA+GGG - chr7_2:21437128-21437147 Msa1052600:intron 20.0%
!!! GAATATCCACTTTAATTTTT+TGG - chr7_2:21437211-21437230 Msa1052600:intron 20.0%
!!! TTTGGACAATATTTCTAAAT+TGG + chr7_2:21437331-21437350 None:intergenic 20.0%
!! ACATATACAAAAATGTGATT+AGG + chr7_2:21437525-21437544 None:intergenic 20.0%
!! CACATCCTTATTAATTATTA+CGG + chr7_2:21437585-21437604 None:intergenic 20.0%
!! TATTCAAATATACACAAAAG+GGG + chr7_2:21437752-21437771 None:intergenic 20.0%
! TATTGTTTGTTCTATCTATG+TGG + chr7_2:21433488-21433507 None:intergenic 25.0%
!! CTTTGATTCTTAAGTTTTCA+AGG - chr7_2:21434288-21434307 Msa1052600:intron 25.0%
!!! TTTAGTGATTAATTTGTTCG+GGG + chr7_2:21434579-21434598 None:intergenic 25.0%
!! TGTATTTGATGACAAAAACA+CGG + chr7_2:21434870-21434889 None:intergenic 25.0%
!!! TAACGTCTTGTTTATGTTTT+TGG - chr7_2:21434982-21435001 Msa1052600:intron 25.0%
!! ATACTTTTGTCAGATATATC+AGG - chr7_2:21435124-21435143 Msa1052600:intron 25.0%
! TCAATCTTACAAGAAATTGA+GGG + chr7_2:21435208-21435227 None:intergenic 25.0%
! TTCAATCTTACAAGAAATTG+AGG + chr7_2:21435209-21435228 None:intergenic 25.0%
! GTAGGGGTAAAAATAATATA+GGG + chr7_2:21435475-21435494 None:intergenic 25.0%
! TGTAGGGGTAAAAATAATAT+AGG + chr7_2:21435476-21435495 None:intergenic 25.0%
! TGATGGTTTATGATATTGTA+GGG + chr7_2:21435492-21435511 None:intergenic 25.0%
! ATGATGGTTTATGATATTGT+AGG + chr7_2:21435493-21435512 None:intergenic 25.0%
! ATGTTAAAAAAAGCTGATGT+TGG - chr7_2:21435536-21435555 Msa1052600:intron 25.0%
! ATTAAGAAAACCAATGTCAT+AGG - chr7_2:21435633-21435652 Msa1052600:intron 25.0%
! AAAACTGACACCAAAAATTA+TGG - chr7_2:21435706-21435725 Msa1052600:intron 25.0%
!! AACTCTGATAAAAAAGGTTT+TGG - chr7_2:21436119-21436138 Msa1052600:CDS 25.0%
!!! ATTATCTTTGTTTTCTGGTT+TGG + chr7_2:21436150-21436169 None:intergenic 25.0%
! TGAACAAATAAAAACCAAAC+TGG + chr7_2:21436381-21436400 None:intergenic 25.0%
! TGGAATAGTATACTAATGAT+AGG - chr7_2:21436433-21436452 Msa1052600:intron 25.0%
!!! ATGACTTGGTTAAAAGAATT+TGG - chr7_2:21436523-21436542 Msa1052600:intron 25.0%
! TTGTTTGAAGAAGATAACAA+TGG + chr7_2:21436880-21436899 None:intergenic 25.0%
! GTTATAGAAATAGCTTACAT+AGG - chr7_2:21437085-21437104 Msa1052600:intron 25.0%
! AATATTCATACACAAGTTAG+TGG - chr7_2:21437165-21437184 Msa1052600:intron 25.0%
!!! ATTTTTTTTTTAGCTTCCTG+AGG - chr7_2:21437246-21437265 Msa1052600:intron 25.0%
! AGTCATCATATTTACCATTT+AGG - chr7_2:21437285-21437304 Msa1052600:intron 25.0%
! AGAAATATTGTCCAAAAGAA+AGG - chr7_2:21437335-21437354 Msa1052600:intron 25.0%
! GAAATATTGTCCAAAAGAAA+GGG - chr7_2:21437336-21437355 Msa1052600:intron 25.0%
! ACACAAGAAGATTAAGATTT+AGG + chr7_2:21437466-21437485 None:intergenic 25.0%
! TCCTTATTAATTATTACGGT+CGG + chr7_2:21437581-21437600 None:intergenic 25.0%
! AGATTAATGATCTTCAGTTA+AGG - chr7_2:21437633-21437652 Msa1052600:intron 25.0%
! TCAGTTAAGGTTAAATTGAT+TGG - chr7_2:21437646-21437665 Msa1052600:intron 25.0%
!! TTTTAGTCAAGGTTTAAACT+CGG + chr7_2:21437677-21437696 None:intergenic 25.0%
!!! CTAAATTATTTTTTGGTTGC+AGG - chr7_2:21437964-21437983 Msa1052600:intron 25.0%
!! GTAATCAAACTTTGAAAAGT+TGG + chr7_2:21438074-21438093 None:intergenic 25.0%
! TTCTATTTACCTAAACAGAA+GGG + chr7_2:21438285-21438304 None:intergenic 25.0%
!! TGACTTTCATTTTCATCTTT+TGG + chr7_2:21438314-21438333 None:intergenic 25.0%
TGACAATGTGTTTATAAGTG+GGG + chr7_2:21434220-21434239 None:intergenic 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr7_2:21434221-21434240 None:intergenic 30.0%
!! TTAGTGATTAATTTGTTCGG+GGG + chr7_2:21434578-21434597 None:intergenic 30.0%
! GTTTTCAATAGAATTTTGGG+TGG - chr7_2:21434650-21434669 Msa1052600:intron 30.0%
GAATGTATAACGAACAATCT+CGG - chr7_2:21434912-21434931 Msa1052600:intron 30.0%
TGGTTTATATGATATCTGTG+AGG + chr7_2:21434944-21434963 None:intergenic 30.0%
! TTTTGTCAGATATATCAGGA+AGG - chr7_2:21435128-21435147 Msa1052600:intron 30.0%
TGGTTGAACAGAAAAACTAA+TGG + chr7_2:21435184-21435203 None:intergenic 30.0%
! CTGAAATCCTGTCTTATTAT+CGG + chr7_2:21435321-21435340 None:intergenic 30.0%
AAAGTTCGCTATATTTGCAA+GGG + chr7_2:21435443-21435462 None:intergenic 30.0%
GATGGTTTATGATATTGTAG+GGG + chr7_2:21435491-21435510 None:intergenic 30.0%
AAAGGCTAAAATGGAAGTTA+AGG - chr7_2:21435842-21435861 Msa1052600:intron 30.0%
TAATATCCTGTTTGCTTGTT+GGG + chr7_2:21435981-21436000 None:intergenic 30.0%
TTAATATCCTGTTTGCTTGT+TGG + chr7_2:21435982-21436001 None:intergenic 30.0%
!!! CCTGAATTATCTTTGTTTTC+TGG + chr7_2:21436155-21436174 None:intergenic 30.0%
CCAGAAAACAAAGATAATTC+AGG - chr7_2:21436152-21436171 Msa1052600:intron 30.0%
!!! TTTTTTGAACAGTTCAACTG+TGG + chr7_2:21436317-21436336 None:intergenic 30.0%
!!! ATTCCAATCTTATTTTGGCA+AGG - chr7_2:21436491-21436510 Msa1052600:intron 30.0%
TATCCTTGCCAAAATAAGAT+TGG + chr7_2:21436497-21436516 None:intergenic 30.0%
CAAGGATAATTTAGATGACT+TGG - chr7_2:21436509-21436528 Msa1052600:intron 30.0%
! TAAAAGAATTTGGCTTCATG+TGG - chr7_2:21436533-21436552 Msa1052600:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG - chr7_2:21436978-21436997 Msa1052600:intron 30.0%
AATAAGCCGAAAACAACTTA+TGG + chr7_2:21436987-21437006 None:intergenic 30.0%
AAACTATCTTGAAGAGCTTA+TGG + chr7_2:21437011-21437030 None:intergenic 30.0%
ATTTACCATTTAGGAATTCC+TGG - chr7_2:21437294-21437313 Msa1052600:intron 30.0%
!! ATATTGACTACCCTTTCTTT+TGG + chr7_2:21437349-21437368 None:intergenic 30.0%
TATTATCACTAGCAAGTCTT+TGG - chr7_2:21437386-21437405 Msa1052600:intron 30.0%
ACCGACCGTAATAATTAATA+AGG - chr7_2:21437577-21437596 Msa1052600:intron 30.0%
ACCTTGACTAAAACAATCAT+TGG - chr7_2:21437684-21437703 Msa1052600:intron 30.0%
!!! ACCAATGATTGTTTTAGTCA+AGG + chr7_2:21437688-21437707 None:intergenic 30.0%
! TCAAACTTTGAAAAGTTGGA+AGG + chr7_2:21438070-21438089 None:intergenic 30.0%
CATACTGCATAACAGTAATA+TGG - chr7_2:21438255-21438274 Msa1052600:CDS 30.0%
GTTCTATTTACCTAAACAGA+AGG + chr7_2:21438286-21438305 None:intergenic 30.0%
AAAGAACTATATGGTCGTTA+TGG - chr7_2:21438423-21438442 Msa1052600:CDS 30.0%
TAAGTTGTAACAGAGAAGAA+GGG + chr7_2:21438483-21438502 None:intergenic 30.0%
! TGGTTACACTTTTAGCACAA+TGG - chr7_2:21433432-21433451 Msa1052600:three_prime_UTR 35.0%
GTTTGTTCTATCTATGTGGT+TGG + chr7_2:21433484-21433503 None:intergenic 35.0%
! AGTACTTTTCGTAGAAGAGA+AGG - chr7_2:21433720-21433739 Msa1052600:intron 35.0%
CTCTGATACCATCTTAGAAA+TGG - chr7_2:21434144-21434163 Msa1052600:CDS 35.0%
TGATACCATCTTAGAAATGG+TGG - chr7_2:21434147-21434166 Msa1052600:CDS 35.0%
GACAATGTGTTTATAAGTGG+GGG + chr7_2:21434219-21434238 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr7_2:21434222-21434241 None:intergenic 35.0%
CCACTTATAAACACATTGTC+AGG - chr7_2:21434219-21434238 Msa1052600:intron 35.0%
! ATTTGTTAAGAGTCCCACAT+TGG + chr7_2:21434256-21434275 None:intergenic 35.0%
TAAGAATCAAAGAGCAACAG+AGG + chr7_2:21434280-21434299 None:intergenic 35.0%
TGACAAGAACTTATTGAACC+TGG - chr7_2:21434321-21434340 Msa1052600:intron 35.0%
! TGTGCAATGGTTCATTTTGT+TGG - chr7_2:21434395-21434414 Msa1052600:intron 35.0%
! TTGTTGGTTATTGACGTGTT+TGG - chr7_2:21434411-21434430 Msa1052600:intron 35.0%
CAAGTACGAAAACACTATCA+GGG + chr7_2:21434893-21434912 None:intergenic 35.0%
TCAAGTACGAAAACACTATC+AGG + chr7_2:21434894-21434913 None:intergenic 35.0%
TAGTCAAGATTGTTCATGTG+TGG + chr7_2:21434964-21434983 None:intergenic 35.0%
TCTTACAAGAAATTGAGGGT+TGG + chr7_2:21435204-21435223 None:intergenic 35.0%
! CATATCAAGGGTATATTCTC+AGG + chr7_2:21435286-21435305 None:intergenic 35.0%
CTGAGAATATACCCTTGATA+TGG - chr7_2:21435284-21435303 Msa1052600:intron 35.0%
! AAATCCTGTCTTATTATCGG+CGG + chr7_2:21435318-21435337 None:intergenic 35.0%
! TATCAGTTTGTCTACCCTTT+TGG - chr7_2:21435365-21435384 Msa1052600:intron 35.0%
CAAAGTTCGCTATATTTGCA+AGG + chr7_2:21435444-21435463 None:intergenic 35.0%
ACATCAGAGACCAAAAATGA+TGG + chr7_2:21435509-21435528 None:intergenic 35.0%
!!! TCATTTTTGGTCTCTGATGT+TGG - chr7_2:21435509-21435528 Msa1052600:intron 35.0%
TCTGTTGAAAAAAGCTGATG+TGG + chr7_2:21435680-21435699 None:intergenic 35.0%
! GTATCAGCGACCATAATTTT+TGG + chr7_2:21435719-21435738 None:intergenic 35.0%
!!! TTTTTTGCTTTTTACCCCTG+CGG + chr7_2:21435741-21435760 None:intergenic 35.0%
TCAAAGTTCGTTATATCTGC+AGG - chr7_2:21435787-21435806 Msa1052600:intron 35.0%
CAAAGTTCGTTATATCTGCA+GGG - chr7_2:21435788-21435807 Msa1052600:intron 35.0%
AAAGTTCGTTATATCTGCAG+GGG - chr7_2:21435789-21435808 Msa1052600:intron 35.0%
! AGCTCCTTTTTCTTTTGTCA+TGG - chr7_2:21435867-21435886 Msa1052600:intron 35.0%
! GCTCCTTTTTCTTTTGTCAT+GGG - chr7_2:21435868-21435887 Msa1052600:intron 35.0%
! CTCCTTTTTCTTTTGTCATG+GGG - chr7_2:21435869-21435888 Msa1052600:intron 35.0%
AGTGATTGAAGGTCAAGATA+AGG - chr7_2:21435906-21435925 Msa1052600:CDS 35.0%
!! TTCTAGAATCAATGCAAGTC+AGG + chr7_2:21436045-21436064 None:intergenic 35.0%
!! TGACTTGCATTGATTCTAGA+AGG - chr7_2:21436044-21436063 Msa1052600:CDS 35.0%
TGCTGCAACTCTGATAAAAA+AGG - chr7_2:21436113-21436132 Msa1052600:CDS 35.0%
!!! ATCTTTGTTTTCTGGTTTGG+AGG + chr7_2:21436147-21436166 None:intergenic 35.0%
AAAGATAATTCAGGCAACTG+AGG - chr7_2:21436161-21436180 Msa1052600:intron 35.0%
CAACAAGATGAACCATGAAT+TGG + chr7_2:21436352-21436371 None:intergenic 35.0%
CAAATAAAAACCAAACTGGC+CGG + chr7_2:21436377-21436396 None:intergenic 35.0%
GTATACTATTCCATTCTTCC+AGG + chr7_2:21436426-21436445 None:intergenic 35.0%
! GATTTTACCAATGTCAAGAG+TGG - chr7_2:21436455-21436474 Msa1052600:intron 35.0%
!! CTCGCATTCCAATCTTATTT+TGG - chr7_2:21436486-21436505 Msa1052600:intron 35.0%
!! ATAATATCATGAGCGTTGGA+GGG + chr7_2:21436850-21436869 None:intergenic 35.0%
!! AATAATATCATGAGCGTTGG+AGG + chr7_2:21436851-21436870 None:intergenic 35.0%
TCCAACGCTCATGATATTAT+TGG - chr7_2:21436850-21436869 Msa1052600:CDS 35.0%
ACCAATAATATCATGAGCGT+TGG + chr7_2:21436854-21436873 None:intergenic 35.0%
AAGTTTAGATGAATACCAGC+TGG - chr7_2:21436920-21436939 Msa1052600:intron 35.0%
AGCTTACATAGGCACTAATA+CGG - chr7_2:21437096-21437115 Msa1052600:intron 35.0%
TTCATACACAAGTTAGTGGT+AGG - chr7_2:21437169-21437188 Msa1052600:intron 35.0%
CAAGTTAGTGGTAGGAAATA+TGG - chr7_2:21437177-21437196 Msa1052600:intron 35.0%
TCCTGAGGATATTTAGCAAA+AGG - chr7_2:21437261-21437280 Msa1052600:intron 35.0%
! ACCTTTTGCTAAATATCCTC+AGG + chr7_2:21437265-21437284 None:intergenic 35.0%
AAATTGGAGATATCTTCACC+AGG + chr7_2:21437315-21437334 None:intergenic 35.0%
AAATATACACAAAAGGGGTC+TGG + chr7_2:21437747-21437766 None:intergenic 35.0%
CAAAACTATACCATTGCCAA+TGG + chr7_2:21437901-21437920 None:intergenic 35.0%
! CATTGGCAATGGTATAGTTT+TGG - chr7_2:21437899-21437918 Msa1052600:intron 35.0%
! AAGTTTTACACCTTGACTAC+AGG - chr7_2:21437988-21438007 Msa1052600:intron 35.0%
AAGTTGGAAGGATTCTACTA+TGG + chr7_2:21438058-21438077 None:intergenic 35.0%
TGAAGTCTTTGTTGCAGTTA+TGG - chr7_2:21438197-21438216 Msa1052600:intron 35.0%
! TGCAGTTATGGTTGTTACTT+TGG - chr7_2:21438209-21438228 Msa1052600:intron 35.0%
AAGTTGTAACAGAGAAGAAG+GGG + chr7_2:21438482-21438501 None:intergenic 35.0%
GTAAGTTGTAACAGAGAAGA+AGG + chr7_2:21438484-21438503 None:intergenic 35.0%
TGTTCTATCTATGTGGTTGG+AGG + chr7_2:21433481-21433500 None:intergenic 40.0%
TGCAAAATCCAAGCCAACAA+TGG - chr7_2:21433539-21433558 Msa1052600:intron 40.0%
AAGTGTAGGTGAAGTCTGAA+GGG + chr7_2:21433568-21433587 None:intergenic 40.0%
AAGAGAGTTCTGTGAAGTGT+AGG + chr7_2:21433582-21433601 None:intergenic 40.0%
!! TAATGCATGAGAGTACCTGA+GGG + chr7_2:21433617-21433636 None:intergenic 40.0%
!! TTAATGCATGAGAGTACCTG+AGG + chr7_2:21433618-21433637 None:intergenic 40.0%
GGTACTCTCATGCATTAACT+TGG - chr7_2:21433620-21433639 Msa1052600:intron 40.0%
GAACTGTCATCTTCTTCAAC+AGG - chr7_2:21433771-21433790 Msa1052600:three_prime_UTR 40.0%
! TTCAACAGGTTGCTTTCTCA+AGG - chr7_2:21433785-21433804 Msa1052600:three_prime_UTR 40.0%
TACTATCTCCTATCCGATGT+GGG - chr7_2:21434002-21434021 Msa1052600:CDS 40.0%
TGCTATCAGGTTTCTGCTAT+CGG + chr7_2:21434099-21434118 None:intergenic 40.0%
! CTCAACCACCATTTCTAAGA+TGG + chr7_2:21434155-21434174 None:intergenic 40.0%
!!! ACCTCAAAAGCTGGTTTTGT+GGG + chr7_2:21434188-21434207 None:intergenic 40.0%
TTAAGAGTCCCACATTGGAT+AGG + chr7_2:21434251-21434270 None:intergenic 40.0%
GCATCCTTGGTCATTAATGT+AGG - chr7_2:21434346-21434365 Msa1052600:intron 40.0%
TCTGCCTACATTAATGACCA+AGG + chr7_2:21434353-21434372 None:intergenic 40.0%
TTGCACAATGCATCTTCATC+AGG + chr7_2:21434382-21434401 None:intergenic 40.0%
GATGAAGATGCATTGTGCAA+TGG - chr7_2:21434382-21434401 Msa1052600:intron 40.0%
TTAAATTCACAGTCCCCTGA+AGG - chr7_2:21434467-21434486 Msa1052600:intron 40.0%
ACACCGAAGGAATTCTAAGT+AGG - chr7_2:21434513-21434532 Msa1052600:intron 40.0%
CCTCCTACTTAGAATTCCTT+CGG + chr7_2:21434519-21434538 None:intergenic 40.0%
!! CAATAGAATTTTGGGTGGAC+AGG - chr7_2:21434655-21434674 Msa1052600:intron 40.0%
GGTGGACAGGAATTGAAAAA+TGG - chr7_2:21434668-21434687 Msa1052600:intron 40.0%
CATAAGCAGTTTCTTGAAGC+AGG - chr7_2:21434703-21434722 Msa1052600:intron 40.0%
CATAAGCAGTTTCTTGAAGC+AGG - chr7_2:21434703-21434722 Msa1052600:intron 40.0%
!! CAAAAACACGGAGAAGTGTT+TGG + chr7_2:21434858-21434877 None:intergenic 40.0%
TATTTAGGAAAGACAGCAGG+TGG + chr7_2:21435249-21435268 None:intergenic 40.0%
CAGTATTTAGGAAAGACAGC+AGG + chr7_2:21435252-21435271 None:intergenic 40.0%
GACGTCAGGAATCAGTATTT+AGG + chr7_2:21435264-21435283 None:intergenic 40.0%
! AGTTTGTCTACCCTTTTGGA+TGG - chr7_2:21435369-21435388 Msa1052600:intron 40.0%
! AGCTGATGTTGGTAAACGTT+TGG - chr7_2:21435547-21435566 Msa1052600:intron 40.0%
!! TTGGTAAACGTTTGGTGATG+TGG - chr7_2:21435555-21435574 Msa1052600:intron 40.0%
! GTGTCATTCACTTGTACTTC+TGG + chr7_2:21435610-21435629 None:intergenic 40.0%
CTCCCCATGACAAAAGAAAA+AGG + chr7_2:21435874-21435893 None:intergenic 40.0%
! TTTTCTTTTGTCATGGGGAG+TGG - chr7_2:21435874-21435893 Msa1052600:intron 40.0%
! TTTCTTTTGTCATGGGGAGT+GGG - chr7_2:21435875-21435894 Msa1052600:intron 40.0%
AATGATCCCAACAAGCAAAC+AGG - chr7_2:21435972-21435991 Msa1052600:intron 40.0%
TATAAGCCTCTAACCTGTTC+AGG + chr7_2:21436018-21436037 None:intergenic 40.0%
!! TGCATTGATTCTAGAAGGAG+AGG - chr7_2:21436049-21436068 Msa1052600:CDS 40.0%
! TGATTCTAGAAGGAGAGGAA+AGG - chr7_2:21436054-21436073 Msa1052600:CDS 40.0%
AAACGAACCAGACAGCAAAT+TGG - chr7_2:21436237-21436256 Msa1052600:intron 40.0%
! TTGGTGGTACTGTTTGTTCT+TGG - chr7_2:21436256-21436275 Msa1052600:intron 40.0%
GTTCAACTGTGGTTTCTTCT+TGG + chr7_2:21436306-21436325 None:intergenic 40.0%
CATGGTTCATCTTGTTGAAC+CGG - chr7_2:21436355-21436374 Msa1052600:intron 40.0%
! TCTGTTAGGCTATGGATTAC+AGG - chr7_2:21436703-21436722 Msa1052600:CDS 40.0%
TACAAACCACTAAGACCCTT+TGG + chr7_2:21437146-21437165 None:intergenic 40.0%
CTTCACCAGGAATTCCTAAA+TGG + chr7_2:21437302-21437321 None:intergenic 40.0%
ATTGTGTTGCCAAGTTGTTG+AGG - chr7_2:21437606-21437625 Msa1052600:intron 40.0%
TGGATTACGAGAGTTTGACA+AGG + chr7_2:21437727-21437746 None:intergenic 40.0%
AGGAGCAAATGAGAGAAGAT+GGG - chr7_2:21438008-21438027 Msa1052600:intron 40.0%
TATGGCAAACCCTTCTGTTT+AGG - chr7_2:21438273-21438292 Msa1052600:CDS 40.0%
TATGGATGTGATGTGGAAAG+TGG - chr7_2:21438441-21438460 Msa1052600:CDS 40.0%
GAAGTGTAGGTGAAGTCTGA+AGG + chr7_2:21433569-21433588 None:intergenic 45.0%
CTTTCAGAACTCTTTCCCTC+AGG - chr7_2:21433599-21433618 Msa1052600:intron 45.0%
GTGATTGTGTTGCAGAAGCA+TGG - chr7_2:21433684-21433703 Msa1052600:intron 45.0%
GTGTCTGACACATCTTAGAG+TGG - chr7_2:21433906-21433925 Msa1052600:three_prime_UTR 45.0%
GACACATCTTAGAGTGGTGT+CGG - chr7_2:21433912-21433931 Msa1052600:three_prime_UTR 45.0%
GTACTATCTCCTATCCGATG+TGG - chr7_2:21434001-21434020 Msa1052600:CDS 45.0%
! GCTTGGTTCGTGGACATAAA+TGG - chr7_2:21434065-21434084 Msa1052600:intron 45.0%
TGGTTCGTGGACATAAATGG+TGG - chr7_2:21434068-21434087 Msa1052600:intron 45.0%
GGTTCGTGGACATAAATGGT+GGG - chr7_2:21434069-21434088 Msa1052600:intron 45.0%
GCTATCAGGTTTCTGCTATC+GGG + chr7_2:21434098-21434117 None:intergenic 45.0%
GATAGCAGAAACCTGATAGC+AGG - chr7_2:21434098-21434117 Msa1052600:intron 45.0%
GAGCCTCTTCAAGATCCATT+GGG + chr7_2:21434127-21434146 None:intergenic 45.0%
AGAGCCTCTTCAAGATCCAT+TGG + chr7_2:21434128-21434147 None:intergenic 45.0%
!!! CCTCAAAAGCTGGTTTTGTG+GGG + chr7_2:21434187-21434206 None:intergenic 45.0%
!!! CACCTCAAAAGCTGGTTTTG+TGG + chr7_2:21434189-21434208 None:intergenic 45.0%
!!! CAAAACCAGCTTTTGAGGTG+AGG - chr7_2:21434189-21434208 Msa1052600:CDS 45.0%
ATTGAACCTGGTTGCATCCT+TGG - chr7_2:21434333-21434352 Msa1052600:intron 45.0%
TAATGACCAAGGATGCAACC+AGG + chr7_2:21434342-21434361 None:intergenic 45.0%
AAGGAGTAGCTCAGTGGTAT+AGG - chr7_2:21434486-21434505 Msa1052600:intron 45.0%
CCGAAGGAATTCTAAGTAGG+AGG - chr7_2:21434516-21434535 Msa1052600:intron 45.0%
TAGTAGTCGTGATCGAACTC+TGG + chr7_2:21434543-21434562 None:intergenic 45.0%
!! GTGATTAATTTGTTCGGGGG+AGG + chr7_2:21434575-21434594 None:intergenic 45.0%
TAGCTGCAATGGCAATTGCT+TGG + chr7_2:21435156-21435175 None:intergenic 45.0%
TAATGGTGCAGTAGCTGCAA+TGG + chr7_2:21435167-21435186 None:intergenic 45.0%
GATTTCAGCCAGTTGTGGAT+AGG - chr7_2:21435333-21435352 Msa1052600:intron 45.0%
CCATCTTTCCTATCCACAAC+TGG + chr7_2:21435344-21435363 None:intergenic 45.0%
CCAGTTGTGGATAGGAAAGA+TGG - chr7_2:21435341-21435360 Msa1052600:intron 45.0%
TGATGTGGCAAGATGTGACT+AGG - chr7_2:21435570-21435589 Msa1052600:intron 45.0%
GATGTGGCAAGATGTGACTA+GGG - chr7_2:21435571-21435590 Msa1052600:intron 45.0%
!! GTTACGCTGACATTTTCGAG+TGG + chr7_2:21435952-21435971 None:intergenic 45.0%
AGAATTTGGGTCACCTGAAC+AGG - chr7_2:21436002-21436021 Msa1052600:intron 45.0%
!! AGTACCACCAATTTGCTGTC+TGG + chr7_2:21436247-21436266 None:intergenic 45.0%
! TGGTTTCTTCTTGGTTCGAG+CGG + chr7_2:21436297-21436316 None:intergenic 45.0%
TTGTTCAGCAGCCATCTATG+TGG - chr7_2:21436394-21436413 Msa1052600:intron 45.0%
CTACATGCCACTCTTGACAT+TGG + chr7_2:21436465-21436484 None:intergenic 45.0%
! TGAATACCAGCTGGCCTATT+TGG - chr7_2:21436929-21436948 Msa1052600:intron 45.0%
GTTTCTCCAAAGGGTCTTAG+TGG - chr7_2:21437137-21437156 Msa1052600:intron 45.0%
AATCTGCGACCTCAACAACT+TGG + chr7_2:21437618-21437637 None:intergenic 45.0%
! CTTTTCCGTCAATTTCACGC+TGG + chr7_2:21437812-21437831 None:intergenic 45.0%
! TCAATTCGAGTTCGTTGCTC+AGG - chr7_2:21437839-21437858 Msa1052600:intron 45.0%
AGAGCATGTCGAGTGTAGTT+TGG + chr7_2:21437867-21437886 None:intergenic 45.0%
CTCATTTGCTCCTGTAGTCA+AGG + chr7_2:21438001-21438020 None:intergenic 45.0%
CAGGAGCAAATGAGAGAAGA+TGG - chr7_2:21438007-21438026 Msa1052600:intron 45.0%
GGAGCAAATGAGAGAAGATG+GGG - chr7_2:21438009-21438028 Msa1052600:intron 45.0%
TGGTCGTTATGGATGTGATG+TGG - chr7_2:21438434-21438453 Msa1052600:CDS 45.0%
!!! TTAAATTCTAAATTATTTTT+TGG - chr7_2:21437957-21437976 Msa1052600:intron 5.0%
! AAGGGATGCCATTGTTGGCT+TGG + chr7_2:21433550-21433569 None:intergenic 50.0%
GTCTGAAGGGATGCCATTGT+TGG + chr7_2:21433555-21433574 None:intergenic 50.0%
TATCTCCTATCCGATGTGGG+TGG - chr7_2:21434005-21434024 Msa1052600:CDS 50.0%
ATCTCCTATCCGATGTGGGT+GGG - chr7_2:21434006-21434025 Msa1052600:CDS 50.0%
! TCGTGGACATAAATGGTGGG+CGG - chr7_2:21434072-21434091 Msa1052600:intron 50.0%
AGCAGAAACCTGATAGCAGG+TGG - chr7_2:21434101-21434120 Msa1052600:intron 50.0%
TGGCCCAATGGATCTTGAAG+AGG - chr7_2:21434121-21434140 Msa1052600:intron 50.0%
!!! CTGGTTTTGTGGGGTGTGTT+AGG + chr7_2:21434178-21434197 None:intergenic 50.0%
! CCCCACAAAACCAGCTTTTG+AGG - chr7_2:21434184-21434203 Msa1052600:CDS 50.0%
GCAATCCTCACCTCAAAAGC+TGG + chr7_2:21434197-21434216 None:intergenic 50.0%
AGGCCATCTCCTATCCAATG+TGG - chr7_2:21434239-21434258 Msa1052600:intron 50.0%
GGCCATCTCCTATCCAATGT+GGG - chr7_2:21434240-21434259 Msa1052600:intron 50.0%
GTCCCACATTGGATAGGAGA+TGG + chr7_2:21434245-21434264 None:intergenic 50.0%
ACCACTGAGCTACTCCTTCA+GGG + chr7_2:21434484-21434503 None:intergenic 50.0%
TACCACTGAGCTACTCCTTC+AGG + chr7_2:21434485-21434504 None:intergenic 50.0%
TGGTATAGGTTCGACACCGA+AGG - chr7_2:21434500-21434519 Msa1052600:intron 50.0%
GGGTATATTCTCAGGACGTC+AGG + chr7_2:21435278-21435297 None:intergenic 50.0%
CGGCAACTGAGCCATATCAA+GGG + chr7_2:21435298-21435317 None:intergenic 50.0%
GTTGCCGCCGATAATAAGAC+AGG - chr7_2:21435311-21435330 Msa1052600:intron 50.0%
GACAGGATTTCAGCCAGTTG+TGG - chr7_2:21435328-21435347 Msa1052600:intron 50.0%
! TGTCTACCCTTTTGGATGGC+AGG - chr7_2:21435373-21435392 Msa1052600:intron 50.0%
TGCTCACCTGCCATCCAAAA+GGG + chr7_2:21435382-21435401 None:intergenic 50.0%
ATGCTCACCTGCCATCCAAA+AGG + chr7_2:21435383-21435402 None:intergenic 50.0%
CCACACAGCACCTATGACAT+TGG + chr7_2:21435646-21435665 None:intergenic 50.0%
! CCAATGTCATAGGTGCTGTG+TGG - chr7_2:21435643-21435662 Msa1052600:intron 50.0%
AAAGCTGATGTGGCTGACGT+TGG + chr7_2:21435670-21435689 None:intergenic 50.0%
ATTATGGTCGCTGATACCGC+AGG - chr7_2:21435722-21435741 Msa1052600:intron 50.0%
TTATGGTCGCTGATACCGCA+GGG - chr7_2:21435723-21435742 Msa1052600:intron 50.0%
GGGCAGGAAGTAGTGATTGA+AGG - chr7_2:21435895-21435914 Msa1052600:intron 50.0%
CGAACCAGACAGCAAATTGG+TGG - chr7_2:21436240-21436259 Msa1052600:intron 50.0%
TCTTGTTGAACCGGCCAGTT+TGG - chr7_2:21436364-21436383 Msa1052600:intron 50.0%
CCAGGACAAAGCCACATAGA+TGG + chr7_2:21436408-21436427 None:intergenic 50.0%
!! CCATCTATGTGGCTTTGTCC+TGG - chr7_2:21436405-21436424 Msa1052600:intron 50.0%
!! GTGGCTTTGTCCTGGAAGAA+TGG - chr7_2:21436413-21436432 Msa1052600:intron 50.0%
ATAGAACTGCTATGCTCCCC+CGG - chr7_2:21436572-21436591 Msa1052600:intron 50.0%
TGCTGCGTTCTGTTAGGCTA+TGG - chr7_2:21436695-21436714 Msa1052600:CDS 50.0%
AGTTGAATGAGACAGCAGCC+AGG - chr7_2:21436735-21436754 Msa1052600:intron 50.0%
ACCACCTGCACCTCACATTT+CGG + chr7_2:21436778-21436797 None:intergenic 50.0%
GACAATCCAAATAGGCCAGC+TGG + chr7_2:21436938-21436957 None:intergenic 50.0%
TGTCGCCAGCGTGAAATTGA+CGG - chr7_2:21437804-21437823 Msa1052600:intron 50.0%
CCTGGACGGACATGAAATCT+AGG + chr7_2:21438541-21438560 Msa1052610:intron 50.0%
CCTAGATTTCATGTCCGTCC+AGG - chr7_2:21438538-21438557 Msa1052600:five_prime_UTR 50.0%
TCTCCTATCCGATGTGGGTG+GGG - chr7_2:21434007-21434026 Msa1052600:CDS 55.0%
GTTAAGAGCCCCACCCACAT+CGG + chr7_2:21434018-21434037 None:intergenic 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG + chr7_2:21434044-21434063 None:intergenic 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG + chr7_2:21434045-21434064 None:intergenic 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG + chr7_2:21434046-21434065 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG - chr7_2:21434043-21434062 Msa1052600:intron 55.0%
ACGACCAGCACTATTGGGCT+TGG - chr7_2:21434048-21434067 Msa1052600:intron 55.0%
CGAACCAAGCCCAATAGTGC+TGG + chr7_2:21434055-21434074 None:intergenic 55.0%
! GCACTATTGGGCTTGGTTCG+TGG - chr7_2:21434055-21434074 Msa1052600:intron 55.0%
CCACTGAGCTACTCCTTCAG+GGG + chr7_2:21434483-21434502 None:intergenic 55.0%
GCGGCAACTGAGCCATATCA+AGG + chr7_2:21435299-21435318 None:intergenic 55.0%
GTGGCAAGATGTGACTAGGG+TGG - chr7_2:21435574-21435593 Msa1052600:intron 55.0%
GCAAGATGTGACTAGGGTGG+TGG - chr7_2:21435577-21435596 Msa1052600:intron 55.0%
! AGATGTGACTAGGGTGGTGG+TGG - chr7_2:21435580-21435599 Msa1052600:intron 55.0%
TATGGTCGCTGATACCGCAG+GGG - chr7_2:21435724-21435743 Msa1052600:intron 55.0%
! TTTTGTCATGGGGAGTGGGC+AGG - chr7_2:21435879-21435898 Msa1052600:intron 55.0%
GGGTCACCTGAACAGGTTAG+AGG - chr7_2:21436009-21436028 Msa1052600:intron 55.0%
CCATGAATTGGCGCTGTCTG+TGG + chr7_2:21436340-21436359 None:intergenic 55.0%
CCACAGACAGCGCCAATTCA+TGG - chr7_2:21436337-21436356 Msa1052600:intron 55.0%
CACTACTGGCAAAGACCGTC+CGG + chr7_2:21436635-21436654 None:intergenic 55.0%
CTAACAGAACGCAGCAGCGA+GGG + chr7_2:21436691-21436710 None:intergenic 55.0%
TTCCGCTGTGCCGAAATGTG+AGG - chr7_2:21436765-21436784 Msa1052600:intron 55.0%
CACCTCACATTTCGGCACAG+CGG + chr7_2:21436770-21436789 None:intergenic 55.0%
TGTGCCGAAATGTGAGGTGC+AGG - chr7_2:21436771-21436790 Msa1052600:intron 55.0%
! AGGTGGTGATGATCACCCCT+GGG - chr7_2:21436791-21436810 Msa1052600:intron 55.0%
! GGTCCTAGAGTGCCTGTCAA+GGG + chr7_2:21436829-21436848 None:intergenic 55.0%
TTTCACGCTGGCGACACAGA+TGG + chr7_2:21437800-21437819 None:intergenic 55.0%
AGCGCAGTCTCCATTGGCAA+TGG - chr7_2:21437888-21437907 Msa1052600:intron 55.0%
GAGGAATGACGCTACCTGGA+CGG + chr7_2:21438555-21438574 Msa1052610:intron 55.0%
TCCAGGTAGCGTCATTCCTC+TGG - chr7_2:21438555-21438574 Msa1052600:five_prime_UTR 55.0%
ACCAGAGGAATGACGCTACC+TGG + chr7_2:21438559-21438578 Msa1052610:intron 55.0%
CCCCTCACGACCAGCACTAT+TGG - chr7_2:21434042-21434061 Msa1052600:intron 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG + chr7_2:21434047-21434066 None:intergenic 60.0%
CCATTGGGCCACCTGCTATC+AGG + chr7_2:21434112-21434131 None:intergenic 60.0%
CCTGATAGCAGGTGGCCCAA+TGG - chr7_2:21434109-21434128 Msa1052600:intron 60.0%
CCCCTGAAGGAGTAGCTCAG+TGG - chr7_2:21434480-21434499 Msa1052600:intron 60.0%
CCTAACAGAACGCAGCAGCG+AGG + chr7_2:21436692-21436711 None:intergenic 60.0%
CCTCGCTGCTGCGTTCTGTT+AGG - chr7_2:21436689-21436708 Msa1052600:CDS 60.0%
GCACAGCGGAACGTGTAACC+TGG + chr7_2:21436756-21436775 None:intergenic 60.0%
GCCGAAATGTGAGGTGCAGG+TGG - chr7_2:21436774-21436793 Msa1052600:intron 60.0%
! CAGGTGGTGATGATCACCCC+TGG - chr7_2:21436790-21436809 Msa1052600:intron 60.0%
TATGCGCTAGCGCCCTTGAC+AGG - chr7_2:21436814-21436833 Msa1052600:intron 60.0%
! GGGTCCTAGAGTGCCTGTCA+AGG + chr7_2:21436830-21436849 None:intergenic 60.0%
GCTCTCAGCGCAGTCTCCAT+TGG - chr7_2:21437882-21437901 Msa1052600:intron 60.0%
GAATGCAACGCGCTCACCAG+AGG + chr7_2:21438574-21438593 Msa1052610:intron 60.0%
GAGCCCCACCCACATCGGAT+AGG + chr7_2:21434013-21434032 None:intergenic 65.0%
AAGCGTGGTAGGCCTGTGCC+GGG + chr7_2:21436593-21436612 None:intergenic 65.0%
GAAGCGTGGTAGGCCTGTGC+CGG + chr7_2:21436594-21436613 None:intergenic 65.0%
AGCGGGGAGGATGGCACTAC+TGG + chr7_2:21436649-21436668 None:intergenic 65.0%
AGTAGTGCCATCCTCCCCGC+TGG - chr7_2:21436648-21436667 Msa1052600:intron 65.0%
! ATCCTCCCCGCTGGCTGTGT+GGG - chr7_2:21436657-21436676 Msa1052600:intron 65.0%
AACTCGCCCACACAGCCAGC+GGG + chr7_2:21436666-21436685 None:intergenic 65.0%
CAACTCGCCCACACAGCCAG+CGG + chr7_2:21436667-21436686 None:intergenic 65.0%
! AGGGCGCTAGCGCATACCCA+GGG + chr7_2:21436810-21436829 None:intergenic 65.0%
!! AAGGGCGCTAGCGCATACCC+AGG + chr7_2:21436811-21436830 None:intergenic 65.0%
GCGCCCTTGACAGGCACTCT+AGG - chr7_2:21436823-21436842 Msa1052600:CDS 65.0%
CTGCTATGCTCCCCCGGCAC+AGG - chr7_2:21436578-21436597 Msa1052600:intron 70.0%
AGCGTGGTAGGCCTGTGCCG+GGG + chr7_2:21436592-21436611 None:intergenic 70.0%
CCTACCACGCTTCGCGCCTG+CGG - chr7_2:21436601-21436620 Msa1052600:intron 70.0%
! CCTGCGGCGTTTTCGCCGGA+CGG - chr7_2:21436617-21436636 Msa1052600:intron 70.0%
CACACAGCCAGCGGGGAGGA+TGG + chr7_2:21436658-21436677 None:intergenic 70.0%
! CATCCTCCCCGCTGGCTGTG+TGG - chr7_2:21436656-21436675 Msa1052600:intron 70.0%
ACTCGCCCACACAGCCAGCG+GGG + chr7_2:21436665-21436684 None:intergenic 70.0%
GGGCGCTAGCGCATACCCAG+GGG + chr7_2:21436809-21436828 None:intergenic 70.0%
GCGTGGTAGGCCTGTGCCGG+GGG + chr7_2:21436591-21436610 None:intergenic 75.0%
CCGCAGGCGCGAAGCGTGGT+AGG + chr7_2:21436604-21436623 None:intergenic 75.0%
AACGCCGCAGGCGCGAAGCG+TGG + chr7_2:21436608-21436627 None:intergenic 75.0%
! CGCGCCTGCGGCGTTTTCGC+CGG - chr7_2:21436613-21436632 Msa1052600:intron 75.0%
CCGTCCGGCGAAAACGCCGC+AGG + chr7_2:21436620-21436639 None:intergenic 75.0%
! CGCCCACACAGCCAGCGGGG+AGG + chr7_2:21436662-21436681 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 21433427 21438611 21433427 ID=Msa1052600;Name=Msa1052600
chr7_2 mRNA 21433427 21438611 21433427 ID=Msa1052600-mRNA-1;Parent=Msa1052600;Name=Msa1052600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=131|0.75|0.66|1|0.75|0.55|9|257|216
chr7_2 exon 21433427 21433478 21433427 ID=Msa1052600-mRNA-1:exon:4821;Parent=Msa1052600-mRNA-1
chr7_2 exon 21433744 21434052 21433744 ID=Msa1052600-mRNA-1:exon:4820;Parent=Msa1052600-mRNA-1
chr7_2 exon 21434129 21434225 21434129 ID=Msa1052600-mRNA-1:exon:4819;Parent=Msa1052600-mRNA-1
chr7_2 exon 21435904 21435927 21435904 ID=Msa1052600-mRNA-1:exon:4818;Parent=Msa1052600-mRNA-1
chr7_2 exon 21436015 21436144 21436015 ID=Msa1052600-mRNA-1:exon:4817;Parent=Msa1052600-mRNA-1
chr7_2 exon 21436669 21436726 21436669 ID=Msa1052600-mRNA-1:exon:4816;Parent=Msa1052600-mRNA-1
chr7_2 exon 21436821 21436901 21436821 ID=Msa1052600-mRNA-1:exon:4815;Parent=Msa1052600-mRNA-1
chr7_2 exon 21438246 21438339 21438246 ID=Msa1052600-mRNA-1:exon:4814;Parent=Msa1052600-mRNA-1
chr7_2 exon 21438418 21438611 21438418 ID=Msa1052600-mRNA-1:exon:4813;Parent=Msa1052600-mRNA-1
chr7_2 five_prime_UTR 21438481 21438611 21438481 ID=Msa1052600-mRNA-1:five_prime_utr;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21438418 21438480 21438418 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21438246 21438339 21438246 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21436821 21436901 21436821 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21436669 21436726 21436669 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21436015 21436144 21436015 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21435904 21435927 21435904 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21434129 21434225 21434129 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 CDS 21433949 21434052 21433949 ID=Msa1052600-mRNA-1:cds;Parent=Msa1052600-mRNA-1
chr7_2 three_prime_UTR 21433744 21433948 21433744 ID=Msa1052600-mRNA-1:three_prime_utr;Parent=Msa1052600-mRNA-1
chr7_2 three_prime_UTR 21433427 21433478 21433427 ID=Msa1052600-mRNA-1:three_prime_utr;Parent=Msa1052600-mRNA-1
Gene Sequence

>Msa1052600

ATGGCATCCCTTCAGACTTCACCTACACTTCACAGAACTCTCTTTCAGAACTCTTTCCCTCAGAAGCATGGTAGTAGTAGTAGTAGTACTTTTCGTAGAAGAGAAGGCATTTCTTTCATTGTCAAAGCTGAACAAGAACTGTCATCTTCTTCAACAGATATATCAGGAAGGCGCCAAGCAATTGCCATTGCAGCTACTGCACCATTAGTTTTTCTGTTCAACCAACCCTCAATTTCTTTTGCCGCCGATAATAAGACAGGATTTCAGCCAGTTGTGGATAGGAAAGATGGATATCATGGGCAGGAAGTAGTGATTGAAGGTCAAGATAAGGTGTTCAAAGATGTTATCGAACCACTCGAAAATGTCAGCGTAACAATGATCCCAACAAGCAAACAGGATATTAAAGAATTTGGGTCACCTGAACAGGTTGCTGCAACTCTGATAAAAAAGCGTGAAATTGACGGAAAAGCATATTATCAATTCGAGTTCGTTGCTCAGGCTCCAAACTACACTCGACATGCTCTCAGCGCAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACTACAGGAGCAAATGAGAGAAGATGGGGAAAGATGAAAGACAGATTGAACACCATAGTAGAATCCTTCCAACTTTTCAAAGTTTGA

Protein sequence

>Msa1052600

MASLQTSPTLHRTLFQNSFPQKHGSSSSSTFRRREGISFIVKAEQELSSSSTDISGRRQAIAIAATAPLVFLFNQPSISFAADNKTGFQPVVDRKDGYHGQEVVIEGQDKVFKDVIEPLENVSVTMIPTSKQDIKEFGSPEQVAATLIKKREIDGKAYYQFEFVAQAPNYTRHALSAVSIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV*