AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076550 MtrunA17_Chr1g0185521 90.074 272 17 2 1 272 1 262 2.22e-171 473
Msa0076550 MtrunA17_Chr8g0353481 36.872 179 111 1 91 269 84 260 3.53e-30 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076550 AT3G63190.1 64.437 284 80 4 1 272 1 275 1.64e-117 338
Msa0076550 AT3G01800.1 38.372 172 104 1 98 269 95 264 1.17e-29 113

Find 73 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACTTCTCCATCGTTAT+TGG 0.194025 1_2:+52705965 None:intergenic
GTGAGTTCTTGCATGCAATT+TGG 0.216153 1_2:-52701749 Msa0076550:three_prime_UTR
GCATTTATTTATTTGTTATA+TGG 0.223997 1_2:-52701817 Msa0076550:three_prime_UTR
GGCTGTTGCCGTTTCATAAA+AGG 0.226762 1_2:-52707719 Msa0076550:intron
TCCTGATGCCAGTTCTCTTT+TGG 0.231676 1_2:-52706380 Msa0076550:CDS
GGTTGCTCTCCCAGTTCTTA+TGG 0.260731 1_2:+52707402 None:intergenic
GAGATCCTTATGATTTCTAT+TGG 0.273462 1_2:-52701645 Msa0076550:three_prime_UTR
TAAGAGGTTTGGGAAGGTTT+TGG 0.298359 1_2:+52707944 None:intergenic
AGATTTGTCTAGCGATTTGC+AGG 0.346351 1_2:-52703768 Msa0076550:intron
ATCACTTCTCCATCGTTATT+GGG 0.347336 1_2:+52705966 None:intergenic
ACATACCTTGATTTGTCATA+TGG 0.356032 1_2:+52706352 None:intergenic
ACATTATAGGTGGAATACTA+TGG 0.360282 1_2:-52706442 Msa0076550:intron
TGAGTTCTTGCATGCAATTT+GGG 0.364858 1_2:-52701748 Msa0076550:three_prime_UTR
AGATCCTTATGATTTCTATT+GGG 0.378275 1_2:-52701644 Msa0076550:three_prime_UTR
AGGGAGAGAATAAGAGGTTT+GGG 0.378294 1_2:+52707934 None:intergenic
AATTTCAGTTCCATAAGAAC+TGG 0.381049 1_2:-52707412 Msa0076550:CDS
GCAATGGTCTTCAAGCTAAC+TGG 0.399998 1_2:+52706415 None:intergenic
GAGGGAGAGAATAAGAGGTT+TGG 0.402451 1_2:+52707933 None:intergenic
CCTCGTGCCTTCACACTCTC+TGG 0.403064 1_2:-52707774 Msa0076550:CDS
CATTTCTACACTATAGGAAT+AGG 0.425710 1_2:+52701692 None:intergenic
CCTCTTATTCTCTCCCTCTC+AGG 0.429330 1_2:-52707928 Msa0076550:intron
ACACTCTCTGGCAGTGGCAG+TGG 0.438253 1_2:-52707762 Msa0076550:CDS
AAAGGACTCTTGACAATGTT+AGG 0.447247 1_2:-52707438 Msa0076550:CDS
CTATATGTCTTCAGAAAAGT+AGG 0.473495 1_2:-52707465 Msa0076550:intron
CCTGAGAGGGAGAGAATAAG+AGG 0.475862 1_2:+52707928 None:intergenic
TACACCCAATAGAAATCATA+AGG 0.476356 1_2:+52701640 None:intergenic
CGTCTCTCTCATCTCTCTCA+TGG 0.481164 1_2:-52708016 Msa0076550:exon
GGCAGACACTCCCTTTCTAA+AGG 0.482553 1_2:-52707741 Msa0076550:CDS
AAGTAACATTTCTACACTAT+AGG 0.484901 1_2:+52701686 None:intergenic
GCTATAGTTAACTCTGATGT+TGG 0.492221 1_2:-52705996 Msa0076550:CDS
ACCAAAAGAGAACTGGCATC+AGG 0.497444 1_2:+52706379 None:intergenic
AGAGCGTTTGACGCTGTAAG+AGG 0.498714 1_2:+52707821 None:intergenic
TGGCGAGACCAAAAGAGAAC+TGG 0.503386 1_2:+52706372 None:intergenic
GTGTCTAAACAAGTTGAAGA+AGG 0.505883 1_2:-52704376 Msa0076550:CDS
AACAACAACTAAAGAAAACT+TGG 0.506289 1_2:+52701866 None:intergenic
GCAGACACTCCCTTTCTAAA+GGG 0.508983 1_2:-52707740 Msa0076550:CDS
ACGGCAACAGCCCTTTAGAA+AGG 0.509422 1_2:+52707730 None:intergenic
TTATGATTTCTATTGGGTGT+AGG 0.513189 1_2:-52701638 Msa0076550:three_prime_UTR
GCCTTCACACTCTCTGGCAG+TGG 0.521051 1_2:-52707768 Msa0076550:CDS
TCTCGCCATATGACAAATCA+AGG 0.529141 1_2:-52706357 Msa0076550:intron
TGGCGTTGTTGAAGAGAAGG+AGG 0.531333 1_2:+52707990 None:intergenic
CCAGAGAGTGTGAAGGCACG+AGG 0.533120 1_2:+52707774 None:intergenic
AGAGAATAAGAGGTTTGGGA+AGG 0.536579 1_2:+52707938 None:intergenic
CGGCAACAGCCCTTTAGAAA+GGG 0.537190 1_2:+52707731 None:intergenic
TTCAGAAAAGTAGGATGGAA+AGG 0.539846 1_2:-52707456 Msa0076550:intron
GACTGATGATTATATAAAGA+AGG 0.541481 1_2:-52703421 Msa0076550:CDS
TTGTGTTGATGTCTTTGTTG+TGG 0.543587 1_2:+52708054 None:intergenic
CCTCTACAAACAGAAAGAAA+AGG 0.543613 1_2:-52703391 Msa0076550:intron
GAGTGGCGTTGTTGAAGAGA+AGG 0.571018 1_2:+52707987 None:intergenic
AGGAGTGCTTATTTGAGCAA+TGG 0.572944 1_2:+52706399 None:intergenic
GGTGTGGTTGGAAGATGGAA+CGG 0.579108 1_2:+52707965 None:intergenic
GTCTATGCTTGACAAAATTG+AGG 0.583206 1_2:-52707377 Msa0076550:intron
CTCAGTTGACATCTGATAGA+CGG 0.584774 1_2:-52705929 Msa0076550:CDS
ATGTCTTCAGAAAAGTAGGA+TGG 0.586348 1_2:-52707461 Msa0076550:intron
AGGGAGCTTTAGAGTGACAT+AGG 0.589467 1_2:+52707794 None:intergenic
TGTCTAAACAAGTTGAAGAA+GGG 0.590313 1_2:-52704375 Msa0076550:CDS
TAAACAAGTTGAAGAAGGGA+AGG 0.590688 1_2:-52704371 Msa0076550:intron
GTCTATCAGATGTCAACTGA+GGG 0.592082 1_2:+52705931 None:intergenic
ACTTGAGTTATATCTAGAGA+AGG 0.614149 1_2:-52701908 Msa0076550:three_prime_UTR
CAACTAAAGAAAACTTGGCA+AGG 0.614360 1_2:+52701871 None:intergenic
CAGAGAGTGTGAAGGCACGA+GGG 0.614420 1_2:+52707775 None:intergenic
ATTTCAGTTCCATAAGAACT+GGG 0.620124 1_2:-52707411 Msa0076550:CDS
ATAACGATGGAGAAGTGATA+CGG 0.620411 1_2:-52705962 Msa0076550:CDS
GAGCTTTAGAGTGACATAGG+TGG 0.625316 1_2:+52707797 None:intergenic
CATGAGAGAGATGAGAGAGA+CGG 0.639741 1_2:+52708017 None:intergenic
CGTCTATCAGATGTCAACTG+AGG 0.647000 1_2:+52705930 None:intergenic
GTGGAGAAGATAACCTGAGA+GGG 0.649364 1_2:+52707915 None:intergenic
GTTGACATCTGATAGACGGA+AGG 0.650277 1_2:-52705925 Msa0076550:intron
GCCACTGCCAGAGAGTGTGA+AGG 0.691751 1_2:+52707767 None:intergenic
GGTATGACTCCCAATAACGA+TGG 0.693482 1_2:-52705975 Msa0076550:CDS
TGTGGAGAAGATAACCTGAG+AGG 0.695861 1_2:+52707914 None:intergenic
ACAACAAAGACATCAACACA+AGG 0.709137 1_2:-52708052 Msa0076550:five_prime_UTR
GGTTGGAAGATGGAACGGAG+TGG 0.775641 1_2:+52707970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAATATACATAAAAAT+GGG + chr1_2:52702175-52702194 None:intergenic 10.0%
!!! TTTTGATGTAAAAATTATAT+TGG + chr1_2:52707574-52707593 None:intergenic 10.0%
!! CATTCAAATATACATAAAAA+TGG + chr1_2:52702176-52702195 None:intergenic 15.0%
!!! TTTTTATGTATATTTGAATG+TGG - chr1_2:52702176-52702195 Msa0076550:intron 15.0%
!!! TTTTATGTATATTTGAATGT+GGG - chr1_2:52702177-52702196 Msa0076550:intron 15.0%
!!! AACAAATTCTAAGAAAATTA+CGG - chr1_2:52702947-52702966 Msa0076550:intron 15.0%
!! AAAATAAAACTAAAAACGTA+TGG + chr1_2:52703195-52703214 None:intergenic 15.0%
!! TATAGAAAAGGAATAAATTA+TGG - chr1_2:52705030-52705049 Msa0076550:intron 15.0%
!! TGAATTAACTATTTACTTAT+AGG - chr1_2:52706862-52706881 Msa0076550:intron 15.0%
!! AAATCACTAGAAATAAATTT+GGG + chr1_2:52707658-52707677 None:intergenic 15.0%
!! AAAATCACTAGAAATAAATT+TGG + chr1_2:52707659-52707678 None:intergenic 15.0%
!!! TTTTGTACATATGTATATTA+AGG - chr1_2:52707676-52707695 Msa0076550:intron 15.0%
!! TTTGTACATATGTATATTAA+GGG - chr1_2:52707677-52707696 Msa0076550:intron 15.0%
!!! GCATTTATTTATTTGTTATA+TGG - chr1_2:52707864-52707883 Msa0076550:intron 15.0%
!!! AAACTTGTTAAACAAAAAAA+TGG + chr1_2:52708086-52708105 None:intergenic 15.0%
!! TTTATGTATATTTGAATGTG+GGG - chr1_2:52702178-52702197 Msa0076550:intron 20.0%
!! ATACTTTCTTTCACTTTATT+TGG - chr1_2:52702527-52702546 Msa0076550:intron 20.0%
!!! TTTCAGTGTTTGTTAAATAA+TGG - chr1_2:52702555-52702574 Msa0076550:intron 20.0%
!! TTATACTAAGTAGTATATCA+AGG + chr1_2:52702631-52702650 None:intergenic 20.0%
!! CTACTATTGTTTATTAGTAA+CGG + chr1_2:52702853-52702872 None:intergenic 20.0%
!! AAAAGCAAAAGTTATCAATT+TGG + chr1_2:52703081-52703100 None:intergenic 20.0%
!! ATAAACCATAAAGAATGAAA+TGG - chr1_2:52703368-52703387 Msa0076550:intron 20.0%
!!! GCTGTATATAAAGTAATTTT+AGG - chr1_2:52703884-52703903 Msa0076550:intron 20.0%
!! TCTTAACAACTATATATACA+AGG - chr1_2:52703998-52704017 Msa0076550:intron 20.0%
!! CTTAACAACTATATATACAA+GGG - chr1_2:52703999-52704018 Msa0076550:intron 20.0%
!! ATTTATACAAGAAAGACAAT+AGG - chr1_2:52704941-52704960 Msa0076550:intron 20.0%
!! AACTTCAAAGAATATAGAAA+AGG - chr1_2:52705018-52705037 Msa0076550:intron 20.0%
!! TTAGTTATACATGAATTATG+TGG - chr1_2:52705177-52705196 Msa0076550:intron 20.0%
!!! TTTATTCTAGAAGCATATTA+TGG + chr1_2:52705633-52705652 None:intergenic 20.0%
!! ATTCACCAATAAAAACAAAA+GGG + chr1_2:52706000-52706019 None:intergenic 20.0%
!!! TTTTGTTTTTATTGGTGAAT+GGG - chr1_2:52706000-52706019 Msa0076550:CDS 20.0%
!!! TTGTTGTTGTATTTCATTAT+TGG - chr1_2:52706171-52706190 Msa0076550:intron 20.0%
!! TATTTCACAAATTATTTGAG+AGG + chr1_2:52706982-52707001 None:intergenic 20.0%
!!! ACAAGATTCTTTTAGTTTTT+TGG - chr1_2:52707053-52707072 Msa0076550:intron 20.0%
!!! CAAGATTCTTTTAGTTTTTT+GGG - chr1_2:52707054-52707073 Msa0076550:intron 20.0%
!!! AAGATTCTTTTAGTTTTTTG+GGG - chr1_2:52707055-52707074 Msa0076550:intron 20.0%
!! TTACACATTTAGATTAACTT+TGG - chr1_2:52707264-52707283 Msa0076550:intron 20.0%
!! AATTCTTAAAATTCAAAGAC+TGG + chr1_2:52707359-52707378 None:intergenic 20.0%
!!! AGATTACTTTTTTGTATCAA+AGG + chr1_2:52707752-52707771 None:intergenic 20.0%
!!! TATGCTTTTTCAAATTGAAA+AGG - chr1_2:52707910-52707929 Msa0076550:intron 20.0%
!! TTTTGGTACCTTTTATGAAA+CGG + chr1_2:52701973-52701992 None:intergenic 25.0%
!! TCAATTTTGAACTACTTCAT+TGG - chr1_2:52702020-52702039 Msa0076550:intron 25.0%
!!! CATTGGTTCTTATTGTAATT+TGG - chr1_2:52702037-52702056 Msa0076550:intron 25.0%
!! AAATGAGTATTGCATTGTAA+TGG - chr1_2:52702382-52702401 Msa0076550:intron 25.0%
!! TTCTTTCACTTTATTTGGAT+TGG - chr1_2:52702532-52702551 Msa0076550:intron 25.0%
! CGTTACTAATAAACAATAGT+AGG - chr1_2:52702851-52702870 Msa0076550:intron 25.0%
!!! GATAACTTTTGCTTTTATTG+TGG - chr1_2:52703085-52703104 Msa0076550:intron 25.0%
! CTTATCCATTTCATTCTTTA+TGG + chr1_2:52703376-52703395 None:intergenic 25.0%
! AGTATTTGTATCATTCCATA+CGG - chr1_2:52703517-52703536 Msa0076550:intron 25.0%
! TGTGATTAAATGTGTGTATA+TGG - chr1_2:52703586-52703605 Msa0076550:intron 25.0%
!! TGTAGTGTCTAGATTATTTT+AGG - chr1_2:52703801-52703820 Msa0076550:intron 25.0%
! TACTTTATATACAGCATCAA+TGG + chr1_2:52703879-52703898 None:intergenic 25.0%
! ACGCACTTGAATAATTTAAA+TGG - chr1_2:52703952-52703971 Msa0076550:CDS 25.0%
!! TATTTTGCTACTAATCTTGA+GGG + chr1_2:52704040-52704059 None:intergenic 25.0%
!!! TTATTTTGCTACTAATCTTG+AGG + chr1_2:52704041-52704060 None:intergenic 25.0%
! TTAGAGAAAAATATCCTTAC+AGG + chr1_2:52704252-52704271 None:intergenic 25.0%
! TTACCAAAGAAAAACCTTAT+CGG - chr1_2:52704441-52704460 Msa0076550:intron 25.0%
!! ATTTTCTACCAGAGAATATA+GGG + chr1_2:52704489-52704508 None:intergenic 25.0%
!! TATTTTCTACCAGAGAATAT+AGG + chr1_2:52704490-52704509 None:intergenic 25.0%
!!! ATTTGGTAATGAAAGTAAAG+TGG - chr1_2:52704683-52704702 Msa0076550:intron 25.0%
!!! ATGTTTCCAGTTTTTAAGAT+GGG - chr1_2:52704791-52704810 Msa0076550:intron 25.0%
! ACAAAAACAATCAATGAGAA+AGG - chr1_2:52705064-52705083 Msa0076550:intron 25.0%
! CAAAAACAATCAATGAGAAA+GGG - chr1_2:52705065-52705084 Msa0076550:intron 25.0%
! AAAAACAATCAATGAGAAAG+GGG - chr1_2:52705066-52705085 Msa0076550:intron 25.0%
!! AAATTCCAACAGAATTGTTT+TGG - chr1_2:52705114-52705133 Msa0076550:intron 25.0%
! AATGACATGGTTTCATAAAA+AGG + chr1_2:52705150-52705169 None:intergenic 25.0%
!! ATGAAACCATGTCATTTAAA+TGG - chr1_2:52705154-52705173 Msa0076550:intron 25.0%
! AACTAACCATTTAAATGACA+TGG + chr1_2:52705163-52705182 None:intergenic 25.0%
!! TATGTTTTGTCATAATGAAC+TGG - chr1_2:52705357-52705376 Msa0076550:intron 25.0%
!!! TGCTTCTAGAATAAATGTTT+TGG - chr1_2:52705638-52705657 Msa0076550:intron 25.0%
! AAGTTGTTTGTAACTTTCTT+TGG - chr1_2:52705669-52705688 Msa0076550:intron 25.0%
! AGCTTATGAAAAACTTGAAA+AGG - chr1_2:52705757-52705776 Msa0076550:intron 25.0%
! ACAAGGAATAAATTACTGAA+GGG + chr1_2:52705819-52705838 None:intergenic 25.0%
!!! GTGATTAATGAAAGGTATTA+CGG + chr1_2:52705845-52705864 None:intergenic 25.0%
! CATTCACCAATAAAAACAAA+AGG + chr1_2:52706001-52706020 None:intergenic 25.0%
!!! CTTTTGTTTTTATTGGTGAA+TGG - chr1_2:52705999-52706018 Msa0076550:CDS 25.0%
! TGTATTTCATTATTGGTCAA+TGG - chr1_2:52706178-52706197 Msa0076550:intron 25.0%
! GACTGATGATTATATAAAGA+AGG - chr1_2:52706260-52706279 Msa0076550:intron 25.0%
! TAACAGATAAACATATCAAG+TGG + chr1_2:52706328-52706347 None:intergenic 25.0%
! GATTAATTAGATGCTTAACA+TGG - chr1_2:52706365-52706384 Msa0076550:CDS 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr1_2:52706593-52706612 Msa0076550:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + chr1_2:52706718-52706737 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr1_2:52706735-52706754 Msa0076550:intron 25.0%
!!! AGATTCTTTTAGTTTTTTGG+GGG - chr1_2:52707056-52707075 Msa0076550:intron 25.0%
! AATGATGTTTCATTTGAACA+TGG - chr1_2:52707208-52707227 Msa0076550:intron 25.0%
! AAATGTGTAAATGAATTGAG+AGG + chr1_2:52707254-52707273 None:intergenic 25.0%
! AAAAATTATATTGGAAGCCT+TGG + chr1_2:52707565-52707584 None:intergenic 25.0%
! AACAACAACTAAAGAAAACT+TGG + chr1_2:52707818-52707837 None:intergenic 25.0%
! AAGTAACATTTCTACACTAT+AGG + chr1_2:52707998-52708017 None:intergenic 25.0%
! AGATCCTTATGATTTCTATT+GGG - chr1_2:52708037-52708056 Msa0076550:five_prime_UTR 25.0%
!! TTTTTCTGAAAAACCCAGAA+AGG - chr1_2:52702060-52702079 Msa0076550:intron 30.0%
!! TTTTCTGAAAAACCCAGAAA+GGG - chr1_2:52702061-52702080 Msa0076550:intron 30.0%
CTATATGTCTTCAGAAAAGT+AGG - chr1_2:52702216-52702235 Msa0076550:intron 30.0%
AATTTCAGTTCCATAAGAAC+TGG - chr1_2:52702269-52702288 Msa0076550:intron 30.0%
ATTTCAGTTCCATAAGAACT+GGG - chr1_2:52702270-52702289 Msa0076550:intron 30.0%
! TCAATTTTGTCAAGCATAGA+CGG + chr1_2:52702305-52702324 None:intergenic 30.0%
!! TGTTCTAAAGTCAGATCAAT+TGG - chr1_2:52702416-52702435 Msa0076550:intron 30.0%
CTACAATTGACAATGTTGAT+TGG - chr1_2:52702780-52702799 Msa0076550:intron 30.0%
ACAATAGTAGGACAAAACTT+AGG - chr1_2:52702863-52702882 Msa0076550:intron 30.0%
CAATAGTAGGACAAAACTTA+GGG - chr1_2:52702864-52702883 Msa0076550:intron 30.0%
AATAGTAGGACAAAACTTAG+GGG - chr1_2:52702865-52702884 Msa0076550:intron 30.0%
CTAAGAAAATTACGGATTTG+AGG - chr1_2:52702955-52702974 Msa0076550:intron 30.0%
GAACAACACAAAAATACCTA+AGG - chr1_2:52703011-52703030 Msa0076550:intron 30.0%
AATCACACATACTTACACAA+TGG - chr1_2:52703111-52703130 Msa0076550:intron 30.0%
! GAGCTGTTTCATAACATTAT+AGG - chr1_2:52703226-52703245 Msa0076550:intron 30.0%
CTGTTTCATAACATTATAGG+TGG - chr1_2:52703229-52703248 Msa0076550:intron 30.0%
ACATTATAGGTGGAATACTA+TGG - chr1_2:52703239-52703258 Msa0076550:intron 30.0%
!! ACATACCTTGATTTGTCATA+TGG + chr1_2:52703332-52703351 None:intergenic 30.0%
TTATTGTATGCTTCTATGTG+TGG - chr1_2:52703422-52703441 Msa0076550:CDS 30.0%
TGTTGAATAATGTCTCAGAT+GGG + chr1_2:52703544-52703563 None:intergenic 30.0%
TTGTTGAATAATGTCTCAGA+TGG + chr1_2:52703545-52703564 None:intergenic 30.0%
!!! AATATCGATTTTCAGCTTGA+AGG - chr1_2:52703651-52703670 Msa0076550:intron 30.0%
AAGCATATATAAGCTATCTG+AGG - chr1_2:52704156-52704175 Msa0076550:intron 30.0%
ATCTTCAATAAACCCTTACA+AGG + chr1_2:52704183-52704202 None:intergenic 30.0%
! TTTCCTATGCATTTAGTCTT+TGG - chr1_2:52704287-52704306 Msa0076550:intron 30.0%
TACCAAAGAAAAACCTTATC+GGG - chr1_2:52704442-52704461 Msa0076550:intron 30.0%
TTTATTCAGAAACCTATGCA+TGG - chr1_2:52704579-52704598 Msa0076550:intron 30.0%
ACCAAATCTCATTGATACAA+GGG + chr1_2:52704670-52704689 None:intergenic 30.0%
TACCAAATCTCATTGATACA+AGG + chr1_2:52704671-52704690 None:intergenic 30.0%
!! CATGTTTCCAGTTTTTAAGA+TGG - chr1_2:52704790-52704809 Msa0076550:intron 30.0%
AAAACAATCAATGAGAAAGG+GGG - chr1_2:52705067-52705086 Msa0076550:intron 30.0%
TGATACCAAAACAATTCTGT+TGG + chr1_2:52705122-52705141 None:intergenic 30.0%
TGAATGTCTAAACGAATATG+TGG - chr1_2:52705207-52705226 Msa0076550:intron 30.0%
!!! ATTTTTTGTTTCTCCTTTCC+AGG - chr1_2:52705268-52705287 Msa0076550:intron 30.0%
! TGTCTAAACAAGTTGAAGAA+GGG - chr1_2:52705306-52705325 Msa0076550:intron 30.0%
! TCTTGTTTATTGCCAATTTG+AGG - chr1_2:52705381-52705400 Msa0076550:intron 30.0%
CTTGTTTATTGCCAATTTGA+GGG - chr1_2:52705382-52705401 Msa0076550:intron 30.0%
TAGCAAAGAAATAAGTTCCA+AGG + chr1_2:52705417-52705436 None:intergenic 30.0%
! ATGTTCACTTCTTTTATAGG+TGG - chr1_2:52705703-52705722 Msa0076550:intron 30.0%
GAAAGAAAGGTAAACAATGA+AGG + chr1_2:52705790-52705809 None:intergenic 30.0%
GACAAGGAATAAATTACTGA+AGG + chr1_2:52705820-52705839 None:intergenic 30.0%
TACCTTTCATTAATCACTGT+TGG - chr1_2:52705848-52705867 Msa0076550:intron 30.0%
TTCCAACAGTGATTAATGAA+AGG + chr1_2:52705853-52705872 None:intergenic 30.0%
CAATAAAAACAAAAGGGAGA+TGG + chr1_2:52705994-52706013 None:intergenic 30.0%
!!! CATCTCCCTTTTGTTTTTAT+TGG - chr1_2:52705992-52706011 Msa0076550:CDS 30.0%
TGGGACAATATACTGTAAAA+TGG - chr1_2:52706019-52706038 Msa0076550:intron 30.0%
GGGACAATATACTGTAAAAT+GGG - chr1_2:52706020-52706039 Msa0076550:intron 30.0%
! CTTTTCTTTCTGTTTGTAGA+GGG + chr1_2:52706292-52706311 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr1_2:52706589-52706608 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr1_2:52706740-52706759 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG + chr1_2:52706775-52706794 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG - chr1_2:52706779-52706798 Msa0076550:intron 30.0%
TCTTTGATAGAACATTATGG+CGG - chr1_2:52706782-52706801 Msa0076550:intron 30.0%
!!! GATTCTTTTAGTTTTTTGGG+GGG - chr1_2:52707057-52707076 Msa0076550:intron 30.0%
! TGTTAGATTTAGAACCGTAT+TGG + chr1_2:52707104-52707123 None:intergenic 30.0%
ACTTTCTATGCATTATGTTC+TGG - chr1_2:52707161-52707180 Msa0076550:intron 30.0%
TTCATTTGAACATGGTATAG+TGG - chr1_2:52707216-52707235 Msa0076550:intron 30.0%
TTGTAATGCATCAGTCAAAA+AGG - chr1_2:52707398-52707417 Msa0076550:CDS 30.0%
TGATATGCCACATAAAATTG+TGG + chr1_2:52707519-52707538 None:intergenic 30.0%
ACTTGAGTTATATCTAGAGA+AGG - chr1_2:52707773-52707792 Msa0076550:CDS 30.0%
!!! TTTTTTCACAGTTGCATCAT+TGG - chr1_2:52707957-52707976 Msa0076550:CDS 30.0%
CATTTCTACACTATAGGAAT+AGG + chr1_2:52707992-52708011 None:intergenic 30.0%
GAGATCCTTATGATTTCTAT+TGG - chr1_2:52708036-52708055 Msa0076550:five_prime_UTR 30.0%
TACACCCAATAGAAATCATA+AGG + chr1_2:52708044-52708063 None:intergenic 30.0%
TTATGATTTCTATTGGGTGT+AGG - chr1_2:52708043-52708062 Msa0076550:five_prime_UTR 30.0%
! TTGTGTTGATGTCTTTGTTG+TGG + chr1_2:52701630-52701649 None:intergenic 35.0%
ACAACAAAGACATCAACACA+AGG - chr1_2:52701629-52701648 Msa0076550:three_prime_UTR 35.0%
! CACTACTAGAGCAATGATTT+TGG + chr1_2:52701990-52702009 None:intergenic 35.0%
ATGTCTTCAGAAAAGTAGGA+TGG - chr1_2:52702220-52702239 Msa0076550:intron 35.0%
TTCAGAAAAGTAGGATGGAA+AGG - chr1_2:52702225-52702244 Msa0076550:intron 35.0%
AAAGGACTCTTGACAATGTT+AGG - chr1_2:52702243-52702262 Msa0076550:intron 35.0%
! AATTTTGTCAAGCATAGACG+GGG + chr1_2:52702303-52702322 None:intergenic 35.0%
! CAATTTTGTCAAGCATAGAC+GGG + chr1_2:52702304-52702323 None:intergenic 35.0%
GTCTATGCTTGACAAAATTG+AGG - chr1_2:52702304-52702323 Msa0076550:intron 35.0%
!! CATGATCACTTTTCATTGCA+TGG - chr1_2:52702468-52702487 Msa0076550:intron 35.0%
TCGTACTAAGTAGTGTATCA+TGG + chr1_2:52702699-52702718 None:intergenic 35.0%
AAATAGCGTCTATATCGTAG+CGG - chr1_2:52702728-52702747 Msa0076550:intron 35.0%
ACATTGTCAATTGTAGATCG+CGG + chr1_2:52702776-52702795 None:intergenic 35.0%
TGGTATGATCAGACATACAT+TGG + chr1_2:52702820-52702839 None:intergenic 35.0%
TTAGTAACGGTAAAGAGCAA+TGG + chr1_2:52702840-52702859 None:intergenic 35.0%
ACAACACGTAAAAACACCTA+AGG + chr1_2:52702896-52702915 None:intergenic 35.0%
TTACGGATTTGAGGAAATCA+TGG - chr1_2:52702964-52702983 Msa0076550:intron 35.0%
TACGGATTTGAGGAAATCAT+GGG - chr1_2:52702965-52702984 Msa0076550:intron 35.0%
GAGCAGTTTGTAATGACAAT+TGG + chr1_2:52703056-52703075 None:intergenic 35.0%
! CATCCTCGTTATGATTTGTA+CGG - chr1_2:52703445-52703464 Msa0076550:intron 35.0%
AAACCGTACAAATCATAACG+AGG + chr1_2:52703451-52703470 None:intergenic 35.0%
GACTAATATACACAGCTCAA+TGG + chr1_2:52703487-52703506 None:intergenic 35.0%
AATAATTCTGAGTGAGCTCT+TGG - chr1_2:52703623-52703642 Msa0076550:intron 35.0%
GCTATAGTTAACTCTGATGT+TGG - chr1_2:52703685-52703704 Msa0076550:intron 35.0%
ATCACTTCTCCATCGTTATT+GGG + chr1_2:52703718-52703737 None:intergenic 35.0%
TATCACTTCTCCATCGTTAT+TGG + chr1_2:52703719-52703738 None:intergenic 35.0%
ATAACGATGGAGAAGTGATA+CGG - chr1_2:52703719-52703738 Msa0076550:intron 35.0%
TCTAGACACTACATCATCAA+TGG + chr1_2:52703794-52703813 None:intergenic 35.0%
CAACCAAAGACTAAATGCAT+AGG + chr1_2:52704293-52704312 None:intergenic 35.0%
! CTATGCATTTAGTCTTTGGT+TGG - chr1_2:52704291-52704310 Msa0076550:intron 35.0%
! TTATCACAAGCGAGCTTTAT+AGG - chr1_2:52704337-52704356 Msa0076550:intron 35.0%
!! GGTTTTTCTTTGGTAACTGT+AGG + chr1_2:52704437-52704456 None:intergenic 35.0%
AAGGAATTCCCTATATTCTC+TGG - chr1_2:52704478-52704497 Msa0076550:intron 35.0%
GTTCTTATTGTAAGCTAGAC+CGG + chr1_2:52704627-52704646 None:intergenic 35.0%
AAATCTCATTGATACAAGGG+TGG + chr1_2:52704667-52704686 None:intergenic 35.0%
ACCCTTGTATCAATGAGATT+TGG - chr1_2:52704666-52704685 Msa0076550:intron 35.0%
! CAAGTTTTCAGTCGATTGTT+AGG + chr1_2:52704726-52704745 None:intergenic 35.0%
!!! TTCCAGTTTTTAAGATGGGT+AGG - chr1_2:52704795-52704814 Msa0076550:intron 35.0%
!!! TCCAGTTTTTAAGATGGGTA+GGG - chr1_2:52704796-52704815 Msa0076550:intron 35.0%
AGTTTCCATAGAAAGTTCAG+CGG + chr1_2:52705002-52705021 None:intergenic 35.0%
! GAAAAGTTTCAAGGTATTCC+AGG - chr1_2:52705089-52705108 Msa0076550:intron 35.0%
AATTCTGTTGGAATTTGACC+TGG + chr1_2:52705110-52705129 None:intergenic 35.0%
ATCTTTGTTAGTTCCTGGAA+AGG + chr1_2:52705284-52705303 None:intergenic 35.0%
ACACTATCTTTGTTAGTTCC+TGG + chr1_2:52705289-52705308 None:intergenic 35.0%
! GTGTCTAAACAAGTTGAAGA+AGG - chr1_2:52705305-52705324 Msa0076550:intron 35.0%
! TAAACAAGTTGAAGAAGGGA+AGG - chr1_2:52705310-52705329 Msa0076550:intron 35.0%
TAACTTTCTTTGGACTGCTT+TGG - chr1_2:52705679-52705698 Msa0076550:intron 35.0%
! GGCATGTTCACTTCTTTTAT+AGG - chr1_2:52705700-52705719 Msa0076550:intron 35.0%
!! TTCTTTTATAGGTGGCTTTG+AGG - chr1_2:52705711-52705730 Msa0076550:intron 35.0%
TGAAGGGAGTTAAGAAAGAA+AGG + chr1_2:52705803-52705822 None:intergenic 35.0%
GTAACTTGATACACTCATGT+AGG - chr1_2:52705935-52705954 Msa0076550:CDS 35.0%
GTTTATTGCAACTTGACGTT+GGG + chr1_2:52706057-52706076 None:intergenic 35.0%
TGTTTATTGCAACTTGACGT+TGG + chr1_2:52706058-52706077 None:intergenic 35.0%
GAAAATTCACACTGATGACT+AGG + chr1_2:52706139-52706158 None:intergenic 35.0%
ACAACAACAAATTATCCTCG+CGG + chr1_2:52706161-52706180 None:intergenic 35.0%
! CCTTTTCTTTCTGTTTGTAG+AGG + chr1_2:52706293-52706312 None:intergenic 35.0%
CCTCTACAAACAGAAAGAAA+AGG - chr1_2:52706290-52706309 Msa0076550:intron 35.0%
AGACTAGACATGATAGGATT+AGG - chr1_2:52706530-52706549 Msa0076550:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr1_2:52706582-52706601 Msa0076550:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1_2:52706602-52706621 Msa0076550:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_2:52706607-52706626 Msa0076550:intron 35.0%
TTGATCTACTCTTCTTACCA+CGG + chr1_2:52706659-52706678 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG - chr1_2:52706660-52706679 Msa0076550:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_2:52706663-52706682 Msa0076550:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr1_2:52706747-52706766 Msa0076550:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_2:52706759-52706778 Msa0076550:intron 35.0%
AACATGGTATAGTGGCTAAA+AGG - chr1_2:52707224-52707243 Msa0076550:intron 35.0%
TCAAATCTCCATCAAGTCAA+AGG + chr1_2:52707292-52707311 None:intergenic 35.0%
TGATGGAGATTTGAGTGAAT+AGG - chr1_2:52707298-52707317 Msa0076550:intron 35.0%
! CACATAAAATTGTGGTGATG+TGG + chr1_2:52707511-52707530 None:intergenic 35.0%
! CACATCACCACAATTTTATG+TGG - chr1_2:52707509-52707528 Msa0076550:intron 35.0%
TGCATTTAATGTCAACTCCA+AGG - chr1_2:52707545-52707564 Msa0076550:intron 35.0%
GTAATTTCTCCCTTTCTTTC+AGG - chr1_2:52707708-52707727 Msa0076550:intron 35.0%
CAACTAAAGAAAACTTGGCA+AGG + chr1_2:52707813-52707832 None:intergenic 35.0%
TGAGTTCTTGCATGCAATTT+GGG - chr1_2:52707933-52707952 Msa0076550:CDS 35.0%
! TAAGAGGTTTGGGAAGGTTT+TGG + chr1_2:52701740-52701759 None:intergenic 40.0%
AGAGAATAAGAGGTTTGGGA+AGG + chr1_2:52701746-52701765 None:intergenic 40.0%
AGGGAGAGAATAAGAGGTTT+GGG + chr1_2:52701750-52701769 None:intergenic 40.0%
TGTCAGTGAGAGGAGAAAAT+GGG + chr1_2:52701793-52701812 None:intergenic 40.0%
TGTTTGTATGTGTCAGTGAG+AGG + chr1_2:52701803-52701822 None:intergenic 40.0%
! CACTTTTCATTGCATGGCTT+CGG - chr1_2:52702474-52702493 Msa0076550:intron 40.0%
TTGTAGATCGCGGAAAATTG+TGG + chr1_2:52702766-52702785 None:intergenic 40.0%
!! AAACTTAGGGGCATTTCCTT+AGG - chr1_2:52702877-52702896 Msa0076550:intron 40.0%
TACCTAAGGAAATGCACCTA+TGG - chr1_2:52703025-52703044 Msa0076550:intron 40.0%
ACCTAAGGAAATGCACCTAT+GGG - chr1_2:52703026-52703045 Msa0076550:intron 40.0%
ATGACAATTGGATGTCCCAT+AGG + chr1_2:52703044-52703063 None:intergenic 40.0%
!! AGGAGTGCTTATTTGAGCAA+TGG + chr1_2:52703285-52703304 None:intergenic 40.0%
TCTCGCCATATGACAAATCA+AGG - chr1_2:52703324-52703343 Msa0076550:intron 40.0%
GTCTATCAGATGTCAACTGA+GGG + chr1_2:52703753-52703772 None:intergenic 40.0%
CTCAGTTGACATCTGATAGA+CGG - chr1_2:52703752-52703771 Msa0076550:intron 40.0%
CACTACATCATCAATGGAAG+TGG + chr1_2:52703788-52703807 None:intergenic 40.0%
! GCATTTAGTCTTTGGTTGGA+AGG - chr1_2:52704295-52704314 Msa0076550:intron 40.0%
TAAATCCTAGTTGCCAGAGT+TGG + chr1_2:52704379-52704398 None:intergenic 40.0%
! AGCCCGATAAGGTTTTTCTT+TGG + chr1_2:52704447-52704466 None:intergenic 40.0%
TAGGGAATTCCTTCAGCTTA+AGG + chr1_2:52704471-52704490 None:intergenic 40.0%
AGATGATATCGCCTTAGACT+TGG - chr1_2:52704509-52704528 Msa0076550:intron 40.0%
CAATGCAGTATAGTCTTTGG+GGG + chr1_2:52704554-52704573 None:intergenic 40.0%
CCAATGCAGTATAGTCTTTG+GGG + chr1_2:52704555-52704574 None:intergenic 40.0%
GCCAATGCAGTATAGTCTTT+GGG + chr1_2:52704556-52704575 None:intergenic 40.0%
TGCCAATGCAGTATAGTCTT+TGG + chr1_2:52704557-52704576 None:intergenic 40.0%
AGCATTGTCATTCCATGCAT+AGG + chr1_2:52704594-52704613 None:intergenic 40.0%
!! GACAATGCTTTTAAGTGTGC+CGG - chr1_2:52704605-52704624 Msa0076550:intron 40.0%
!! TGAGAGCATTAACCAAGCTT+TGG - chr1_2:52704746-52704765 Msa0076550:intron 40.0%
! CATTAACCAAGCTTTGGCAA+TGG - chr1_2:52704752-52704771 Msa0076550:intron 40.0%
TCCCTACCCATCTTAAAAAC+TGG + chr1_2:52704800-52704819 None:intergenic 40.0%
!! GTGAAGACTAGTACTGGTAA+TGG - chr1_2:52704840-52704859 Msa0076550:intron 40.0%
! ATTTTGCTCCTAACCTTGAG+GGG + chr1_2:52704973-52704992 None:intergenic 40.0%
! GATTTTGCTCCTAACCTTGA+GGG + chr1_2:52704974-52704993 None:intergenic 40.0%
! TGATTTTGCTCCTAACCTTG+AGG + chr1_2:52704975-52704994 None:intergenic 40.0%
AGTATCCGCTGAACTTTCTA+TGG - chr1_2:52704994-52705013 Msa0076550:intron 40.0%
AGAAAGGGGGAAAAGTTTCA+AGG - chr1_2:52705080-52705099 Msa0076550:intron 40.0%
!! GAAAGGTATTACGGAAGACA+AGG + chr1_2:52705836-52705855 None:intergenic 40.0%
! CACTGTTGGAATTTTCTCAC+AGG - chr1_2:52705862-52705881 Msa0076550:intron 40.0%
AGATTTGTCTAGCGATTTGC+AGG - chr1_2:52705913-52705932 Msa0076550:intron 40.0%
GTGGTAAGACTAGACATGAT+AGG - chr1_2:52706524-52706543 Msa0076550:intron 40.0%
TGACATCATTAGAGAGAGAG+TGG - chr1_2:52706555-52706574 Msa0076550:intron 40.0%
GACATCATTAGAGAGAGAGT+GGG - chr1_2:52706556-52706575 Msa0076550:intron 40.0%
ACATCATTAGAGAGAGAGTG+GGG - chr1_2:52706557-52706576 Msa0076550:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_2:52706688-52706707 Msa0076550:intron 40.0%
GGGAGAAGTTCACTGAAATT+GGG - chr1_2:52707077-52707096 Msa0076550:intron 40.0%
CACTGAAATTGGGTCCAATA+CGG - chr1_2:52707087-52707106 Msa0076550:intron 40.0%
GTTCTCGAAATTGTGAGCAT+CGG - chr1_2:52707328-52707347 Msa0076550:intron 40.0%
! CACGTTAAATGAGCATTGTG+TGG - chr1_2:52707459-52707478 Msa0076550:intron 40.0%
!! TGGTGATGTGGCATTGATTT+GGG + chr1_2:52707499-52707518 None:intergenic 40.0%
GGGAAAAACTAGAAGTGATG+AGG + chr1_2:52707638-52707657 None:intergenic 40.0%
TCAGCAACTCCTGAAAGAAA+GGG + chr1_2:52707720-52707739 None:intergenic 40.0%
GTGAGTTCTTGCATGCAATT+TGG - chr1_2:52707932-52707951 Msa0076550:CDS 40.0%
CATGAGAGAGATGAGAGAGA+CGG + chr1_2:52701667-52701686 None:intergenic 45.0%
!! GTTTTGGTGTGGTTGGAAGA+TGG + chr1_2:52701724-52701743 None:intergenic 45.0%
GAGGGAGAGAATAAGAGGTT+TGG + chr1_2:52701751-52701770 None:intergenic 45.0%
GTGGAGAAGATAACCTGAGA+GGG + chr1_2:52701769-52701788 None:intergenic 45.0%
TGTGGAGAAGATAACCTGAG+AGG + chr1_2:52701770-52701789 None:intergenic 45.0%
GTGTCAGTGAGAGGAGAAAA+TGG + chr1_2:52701794-52701813 None:intergenic 45.0%
!! GAGCTTTAGAGTGACATAGG+TGG + chr1_2:52701887-52701906 None:intergenic 45.0%
!! AGGGAGCTTTAGAGTGACAT+AGG + chr1_2:52701890-52701909 None:intergenic 45.0%
GCAGACACTCCCTTTCTAAA+GGG - chr1_2:52701941-52701960 Msa0076550:exon 45.0%
! GGCTGTTGCCGTTTCATAAA+AGG - chr1_2:52701962-52701981 Msa0076550:intron 45.0%
GCTCTCACAAATCCCTTTCT+GGG + chr1_2:52702076-52702095 None:intergenic 45.0%
AGCTCTCACAAATCCCTTTC+TGG + chr1_2:52702077-52702096 None:intergenic 45.0%
TCCCATAGGTGCATTTCCTT+AGG + chr1_2:52703030-52703049 None:intergenic 45.0%
GCAATGGTCTTCAAGCTAAC+TGG + chr1_2:52703269-52703288 None:intergenic 45.0%
! TCCTGATGCCAGTTCTCTTT+TGG - chr1_2:52703301-52703320 Msa0076550:intron 45.0%
ACCAAAAGAGAACTGGCATC+AGG + chr1_2:52703305-52703324 None:intergenic 45.0%
GGTATGACTCCCAATAACGA+TGG - chr1_2:52703706-52703725 Msa0076550:intron 45.0%
CGTCTATCAGATGTCAACTG+AGG + chr1_2:52703754-52703773 None:intergenic 45.0%
GTTGACATCTGATAGACGGA+AGG - chr1_2:52703756-52703775 Msa0076550:intron 45.0%
! AGCTATCTGAGGTCCTTGTA+AGG - chr1_2:52704167-52704186 Msa0076550:intron 45.0%
! GCTATCTGAGGTCCTTGTAA+GGG - chr1_2:52704168-52704187 Msa0076550:intron 45.0%
! GACTTCTTTTGTGAGCTCCA+AGG + chr1_2:52704220-52704239 None:intergenic 45.0%
GGAGCTCACAAAAGAAGTCT+TGG - chr1_2:52704221-52704240 Msa0076550:intron 45.0%
!! AAGTCTTGGTGATGCCTGTA+AGG - chr1_2:52704235-52704254 Msa0076550:intron 45.0%
! GCGAGCTTTATAGGTGTGAA+AGG - chr1_2:52704346-52704365 Msa0076550:intron 45.0%
GAAAGGTGAAGAACCAACTC+TGG - chr1_2:52704363-52704382 Msa0076550:intron 45.0%
AAGAACCAACTCTGGCAACT+AGG - chr1_2:52704371-52704390 Msa0076550:intron 45.0%
TGAACAGCAGACCAAGTCTA+AGG + chr1_2:52704523-52704542 None:intergenic 45.0%
CCCCAAAGACTATACTGCAT+TGG - chr1_2:52704552-52704571 Msa0076550:intron 45.0%
AGCAGTGTGAAGACTAGTAC+TGG - chr1_2:52704834-52704853 Msa0076550:intron 45.0%
ACCTTAGACTGGAACAGTGT+CGG - chr1_2:52704885-52704904 Msa0076550:intron 45.0%
CAATAGGAACAAACCCCTCA+AGG - chr1_2:52704957-52704976 Msa0076550:intron 45.0%
GGAGAGCAAAACCCTCAAAT+TGG + chr1_2:52705396-52705415 None:intergenic 45.0%
! TTTGAGGGTTTTGCTCTCCT+TGG - chr1_2:52705397-52705416 Msa0076550:intron 45.0%
! ATCAGTGTGAATTTTCCGCG+AGG - chr1_2:52706143-52706162 Msa0076550:intron 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr1_2:52706429-52706448 Msa0076550:CDS 45.0%
TCCGTACCATACAACATTGC+CGG + chr1_2:52706433-52706452 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr1_2:52706437-52706456 Msa0076550:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr1_2:52706438-52706457 Msa0076550:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG + chr1_2:52706474-52706493 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - chr1_2:52706477-52706496 Msa0076550:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG - chr1_2:52706558-52706577 Msa0076550:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_2:52706672-52706691 Msa0076550:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_2:52706682-52706701 Msa0076550:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr1_2:52706829-52706848 None:intergenic 45.0%
!! GGATAAGGCGTTGTTGTTGT+TGG - chr1_2:52706837-52706856 Msa0076550:intron 45.0%
GGGGAGAAGTTCACTGAAAT+TGG - chr1_2:52707076-52707095 Msa0076550:intron 45.0%
!! CTTTGGTGCCTTTGACTTGA+TGG - chr1_2:52707281-52707300 Msa0076550:intron 45.0%
TTCCTTACCTGTTGCGGTTA+GGG - chr1_2:52707424-52707443 Msa0076550:CDS 45.0%
!! GCATTGATTTGGGATCCATG+TGG + chr1_2:52707489-52707508 None:intergenic 45.0%
!! GTGGTGATGTGGCATTGATT+TGG + chr1_2:52707500-52707519 None:intergenic 45.0%
GTCAGCAACTCCTGAAAGAA+AGG + chr1_2:52707721-52707740 None:intergenic 45.0%
!!! ATTAAATAAAAAAGTATTAA+TGG + chr1_2:52702348-52702367 None:intergenic 5.0%
!! AACTATATTAAAAATATTAA+AGG - chr1_2:52704084-52704103 Msa0076550:intron 5.0%
CGTCTCTCTCATCTCTCTCA+TGG - chr1_2:52701665-52701684 Msa0076550:three_prime_UTR 50.0%
TGGCGTTGTTGAAGAGAAGG+AGG + chr1_2:52701694-52701713 None:intergenic 50.0%
GAGTGGCGTTGTTGAAGAGA+AGG + chr1_2:52701697-52701716 None:intergenic 50.0%
GGTGTGGTTGGAAGATGGAA+CGG + chr1_2:52701719-52701738 None:intergenic 50.0%
!! TGGGAAGGTTTTGGTGTGGT+TGG + chr1_2:52701731-52701750 None:intergenic 50.0%
!! GGTTTGGGAAGGTTTTGGTG+TGG + chr1_2:52701735-52701754 None:intergenic 50.0%
CCTGAGAGGGAGAGAATAAG+AGG + chr1_2:52701756-52701775 None:intergenic 50.0%
CCTCTTATTCTCTCCCTCTC+AGG - chr1_2:52701753-52701772 Msa0076550:three_prime_UTR 50.0%
GTGAGAGGAGAAAATGGGTG+TGG + chr1_2:52701788-52701807 None:intergenic 50.0%
! AGAGCGTTTGACGCTGTAAG+AGG + chr1_2:52701863-52701882 None:intergenic 50.0%
GGCAGACACTCCCTTTCTAA+AGG - chr1_2:52701940-52701959 Msa0076550:exon 50.0%
! CGGCAACAGCCCTTTAGAAA+GGG + chr1_2:52701953-52701972 None:intergenic 50.0%
! ACGGCAACAGCCCTTTAGAA+AGG + chr1_2:52701954-52701973 None:intergenic 50.0%
GGTTGCTCTCCCAGTTCTTA+TGG + chr1_2:52702282-52702301 None:intergenic 50.0%
GGTCACTTCAGCTTTGCACT+TGG + chr1_2:52703174-52703193 None:intergenic 50.0%
TGGCGAGACCAAAAGAGAAC+TGG + chr1_2:52703312-52703331 None:intergenic 50.0%
ATGTCTCAGATGGGACCGTA+TGG + chr1_2:52703535-52703554 None:intergenic 50.0%
GATGACGAGCAACTGATCCT+TGG - chr1_2:52704200-52704219 Msa0076550:intron 50.0%
CAGCTTAAGGTAGCCCGATA+AGG + chr1_2:52704458-52704477 None:intergenic 50.0%
ATCGGGCTACCTTAAGCTGA+AGG - chr1_2:52704459-52704478 Msa0076550:intron 50.0%
AGTCGATTGTTAGGCACGTG+AGG + chr1_2:52704717-52704736 None:intergenic 50.0%
! TGTGTGCCATTGCCAAAGCT+TGG + chr1_2:52704761-52704780 None:intergenic 50.0%
CAGCTGCTGAAACCTTAGAC+TGG - chr1_2:52704874-52704893 Msa0076550:intron 50.0%
TCCGACACTGTTCCAGTCTA+AGG + chr1_2:52704889-52704908 None:intergenic 50.0%
! TAGACTGGAACAGTGTCGGA+TGG - chr1_2:52704889-52704908 Msa0076550:intron 50.0%
GTGTCGGATGGAGAAAAGCA+AGG - chr1_2:52704901-52704920 Msa0076550:intron 50.0%
CGGATGGAGAAAAGCAAGGT+AGG - chr1_2:52704905-52704924 Msa0076550:intron 50.0%
GGAACAAACCCCTCAAGGTT+AGG - chr1_2:52704962-52704981 Msa0076550:intron 50.0%
CTATGCCAAAGCAGTCAGAC+CGG - chr1_2:52706411-52706430 Msa0076550:CDS 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr1_2:52706424-52706443 Msa0076550:CDS 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - chr1_2:52706485-52706504 Msa0076550:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG - chr1_2:52706505-52706524 Msa0076550:intron 50.0%
TCTTCTTACCACGGCGTCTA+CGG + chr1_2:52706650-52706669 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_2:52706824-52706843 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr1_2:52706828-52706847 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr1_2:52706830-52706849 None:intergenic 50.0%
AGGTCCTTCCTTACCTGTTG+CGG - chr1_2:52707418-52707437 Msa0076550:CDS 50.0%
CTAACCGCAACAGGTAAGGA+AGG + chr1_2:52707425-52707444 None:intergenic 50.0%
CTTCCTTACCTGTTGCGGTT+AGG - chr1_2:52707423-52707442 Msa0076550:CDS 50.0%
TCCTTACCTGTTGCGGTTAG+GGG - chr1_2:52707425-52707444 Msa0076550:CDS 50.0%
TCATAACCCCTAACCGCAAC+AGG + chr1_2:52707434-52707453 None:intergenic 50.0%
GCATTGTGTGGTCTTCCACA+TGG - chr1_2:52707471-52707490 Msa0076550:intron 50.0%
GGTTGGAAGATGGAACGGAG+TGG + chr1_2:52701714-52701733 None:intergenic 55.0%
! CAGAGAGTGTGAAGGCACGA+GGG + chr1_2:52701909-52701928 None:intergenic 55.0%
GCTTTGGCAATGGCACACAG+AGG - chr1_2:52704762-52704781 Msa0076550:intron 55.0%
CATTGCCGGTCTGACTGCTT+TGG + chr1_2:52706419-52706438 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr1_2:52706441-52706460 Msa0076550:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr1_2:52706497-52706516 Msa0076550:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG + chr1_2:52706649-52706668 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_2:52706816-52706835 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_2:52706815-52706834 Msa0076550:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_2:52706816-52706835 Msa0076550:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_2:52706822-52706841 Msa0076550:intron 55.0%
ACCCCTAACCGCAACAGGTA+AGG + chr1_2:52707429-52707448 None:intergenic 55.0%
! CCAGAGAGTGTGAAGGCACG+AGG + chr1_2:52701910-52701929 None:intergenic 60.0%
CCTCGTGCCTTCACACTCTC+TGG - chr1_2:52701907-52701926 Msa0076550:three_prime_UTR 60.0%
GCCTTCACACTCTCTGGCAG+TGG - chr1_2:52701913-52701932 Msa0076550:three_prime_UTR 60.0%
! GCCACTGCCAGAGAGTGTGA+AGG + chr1_2:52701917-52701936 None:intergenic 60.0%
ACACTCTCTGGCAGTGGCAG+TGG - chr1_2:52701919-52701938 Msa0076550:three_prime_UTR 60.0%
GGCAATGGCACACAGAGGTG+AGG - chr1_2:52704767-52704786 Msa0076550:intron 60.0%
GAGAAGACCCGTAGACGCCG+TGG - chr1_2:52706639-52706658 Msa0076550:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52701591 52708112 52701591 ID=Msa0076550;Name=Msa0076550
chr1_2 mRNA 52701591 52708112 52701591 ID=Msa0076550-mRNA-1;Parent=Msa0076550;Name=Msa0076550-mRNA-1;_AED=0.21;_eAED=0.21;_QI=93|1|1|1|0.8|0.90|11|365|272
chr1_2 exon 52701591 52701973 52701591 ID=Msa0076550-mRNA-1:exon:16307;Parent=Msa0076550-mRNA-1
chr1_2 exon 52703392 52703448 52703392 ID=Msa0076550-mRNA-1:exon:16306;Parent=Msa0076550-mRNA-1
chr1_2 exon 52703769 52703819 52703769 ID=Msa0076550-mRNA-1:exon:16305;Parent=Msa0076550-mRNA-1
chr1_2 exon 52703925 52703981 52703925 ID=Msa0076550-mRNA-1:exon:16304;Parent=Msa0076550-mRNA-1
chr1_2 exon 52704372 52704413 52704372 ID=Msa0076550-mRNA-1:exon:16303;Parent=Msa0076550-mRNA-1
chr1_2 exon 52705926 52706037 52705926 ID=Msa0076550-mRNA-1:exon:16302;Parent=Msa0076550-mRNA-1
chr1_2 exon 52706358 52706455 52706358 ID=Msa0076550-mRNA-1:exon:16301;Parent=Msa0076550-mRNA-1
chr1_2 exon 52707378 52707473 52707378 ID=Msa0076550-mRNA-1:exon:16300;Parent=Msa0076550-mRNA-1
chr1_2 exon 52707556 52707625 52707556 ID=Msa0076550-mRNA-1:exon:16299;Parent=Msa0076550-mRNA-1
chr1_2 exon 52707720 52707846 52707720 ID=Msa0076550-mRNA-1:exon:16298;Parent=Msa0076550-mRNA-1
chr1_2 exon 52707929 52708112 52707929 ID=Msa0076550-mRNA-1:exon:16297;Parent=Msa0076550-mRNA-1
chr1_2 five_prime_UTR 52708020 52708112 52708020 ID=Msa0076550-mRNA-1:five_prime_utr;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52707929 52708019 52707929 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52707720 52707846 52707720 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52707556 52707625 52707556 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52707378 52707473 52707378 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52706358 52706455 52706358 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52705926 52706037 52705926 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52704372 52704413 52704372 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52703925 52703981 52703925 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52703769 52703819 52703769 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52703392 52703448 52703392 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 CDS 52701956 52701973 52701956 ID=Msa0076550-mRNA-1:cds;Parent=Msa0076550-mRNA-1
chr1_2 three_prime_UTR 52701591 52701955 52701591 ID=Msa0076550-mRNA-1:three_prime_utr;Parent=Msa0076550-mRNA-1
Gene Sequence

>Msa0076550

ATGGCAACCTCCTTCTCTTCAACAACGCCACTCCGTTCCATCTTCCAACCACACCAAAACCTTCCCAAACCTCTTATTCTCTCCCTCTCAGAGTCCTCTTACAGCGTCAAACGCTCTTCCACCTATGTCACTCTAAAGCTCCCTCGTGCCTTCACACTCTCTGGCAGTGGCAGTGGCAGACACTCCCTTTCTAAAGGGCTGTTGCCGTTTCATAAAAGAAAGGGATTTGTGAGAGCTGCTACTATTGAAGAAATTGAAGCTGAAAAAGCATCTATTGAGAATGATGTTAAAAGTAGGATGGAAAGGACTCTTGACAATGTTAGGACTAATTTCAGTTCCATAAGAACTGGGAGAGCAACCCCGTCTATGCTTGACAAAATTGAGGTGGAATACTATGGATCTCCAGTTAGCTTGAAGACCATTGCTCAAATAAGCACTCCTGATGCCAGTTCTCTTTTGGTCTCGCCATATGACAAATCAAGCTTGAAGGCAATAGAGAAAGCTATAGTTAACTCTGATGTTGGTATGACTCCCAATAACGATGGAGAAGTGATACGGTTGAGTATCCCTCAGTTGACATCTGATAGACGGAAGGAACTAACAAAGATAGTGTCTAAACAAGTTGAAGAAGGGAAGGTGGCTTTGAGGAACATAAGAAGAGATGCTTTGAAAGCTTATGAAAAACTTGAAAAGGATAAGAAGCTCTCAGAAGATAATGTAAAAGATTTGTCTAGCGATTTGCAGAAGCTGACTGATGATTATATAAAGAAGGTTGATGCCCTCTACAAACAGAAAGAAAAGGAGTTGCTGACAGTTTGA

Protein sequence

>Msa0076550

MATSFSSTTPLRSIFQPHQNLPKPLILSLSESSYSVKRSSTYVTLKLPRAFTLSGSGSGRHSLSKGLLPFHKRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVRTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV*