AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0273550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273550 MtrunA17_Chr2g0283631 95.918 147 3 1 1 147 1 144 1.91e-80 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273550 AT1G29070.1 62.264 106 33 3 43 147 56 155 1.29e-30 108

Find 44 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCACTCTTCTTCCATTTC+AGG 0.120508 2_3:+5131433 Msa0273550:CDS
TGTGACTATTTGCCACTATT+TGG 0.199997 2_3:-5133406 None:intergenic
TCTGCATTTGTAATGGAAAA+TGG 0.211002 2_3:+5133764 Msa0273550:three_prime_UTR
AAGCAATGGAGAACGAAATT+TGG 0.248963 2_3:-5131365 None:intergenic
CTGCATTTGTAATGGAAAAT+GGG 0.338949 2_3:+5133765 Msa0273550:three_prime_UTR
TAAAAGTATTATATTGCAAA+TGG 0.346945 2_3:+5133437 Msa0273550:three_prime_UTR
TCCAGGTTTGTCACTGGGAT+TGG 0.354922 2_3:+5133168 Msa0273550:intron
GTGACTATTTGCCACTATTT+GGG 0.365271 2_3:-5133405 None:intergenic
CCATGTCCAGGTTTGTCACT+GGG 0.366798 2_3:+5133163 Msa0273550:intron
TGTCTTCTAGGTCCAACATT+AGG 0.373666 2_3:-5133199 None:intergenic
GCCACTATTTGGGTGGCTCT+TGG 0.379573 2_3:-5133395 None:intergenic
TTATGCTTCTGCATTTGTAA+TGG 0.392042 2_3:+5133757 Msa0273550:three_prime_UTR
TTAAACATAATCTGATACTT+AGG 0.392527 2_3:-5133518 None:intergenic
TCCATGTCCAGGTTTGTCAC+TGG 0.393144 2_3:+5133162 Msa0273550:intron
ACTTGACTATGGTGGCTGTT+TGG 0.414606 2_3:+5133686 Msa0273550:three_prime_UTR
ATGGTGGCTGTTTGGAATGA+AGG 0.419638 2_3:+5133694 Msa0273550:three_prime_UTR
GAGTGGAAAGAGAGAGAAGA+AGG 0.436096 2_3:-5131418 None:intergenic
GGTTTGATTGAACTTGACTA+TGG 0.439411 2_3:+5133675 Msa0273550:three_prime_UTR
AAACGAATGAGCACAACAAC+TGG 0.446755 2_3:+5133322 Msa0273550:CDS
GAACTGAGAGAGATTGAAGA+TGG 0.451682 2_3:-5131340 None:intergenic
GTTGGACCTAGAAGACAAAA+TGG 0.465141 2_3:+5133205 Msa0273550:CDS
AAAAGTATTATATTGCAAAT+GGG 0.466670 2_3:+5133438 Msa0273550:three_prime_UTR
TTGGGTGGCTCTTGGTGCAA+AGG 0.484761 2_3:-5133387 None:intergenic
TAGAAGACAAAATGGTCGTC+TGG 0.490410 2_3:+5133213 Msa0273550:CDS
AGTGGGTGCTCTGAATTTCA+TGG 0.501238 2_3:-5131299 None:intergenic
ACCAAGAGCCACCCAAATAG+TGG 0.508798 2_3:+5133394 Msa0273550:CDS
GAAAGAGAGAGAAGAAGGAG+AGG 0.509500 2_3:-5131413 None:intergenic
AAGTAGATCACGAAAATCAT+TGG 0.511560 2_3:+5133279 Msa0273550:CDS
AGAGGAAAGAGAAGAAGTGA+AGG 0.513017 2_3:-5131395 None:intergenic
TTGTTGGTTAGTTATGCAAT+TGG 0.524270 2_3:+5133615 Msa0273550:three_prime_UTR
TTGTTGTGCTCATTCGTTTG+CGG 0.530347 2_3:-5133318 None:intergenic
AAATCATTGGCACGCACTCA+TGG 0.536974 2_3:+5133292 Msa0273550:CDS
GTGAAGGAGCAATGAAGCAA+TGG 0.546159 2_3:-5131379 None:intergenic
CAATGGAGAACGAAATTTGG+AGG 0.554985 2_3:-5131362 None:intergenic
CTGAATTTCATGGATATCAA+AGG 0.555430 2_3:-5131289 None:intergenic
CGTCTGGTTATAGTAGCAGC+AGG 0.557576 2_3:+5133229 Msa0273550:CDS
TTGGACTTGAAACCTAATGT+TGG 0.565813 2_3:+5133187 Msa0273550:CDS
ATTAAAGCGACGACGCGCCA+AGG 0.568139 2_3:+5133354 Msa0273550:CDS
ACTATTTGCCACTATTTGGG+TGG 0.569879 2_3:-5133402 None:intergenic
TTGATTGAACTTGACTATGG+TGG 0.580096 2_3:+5133678 Msa0273550:three_prime_UTR
TACCTGAAATGGAAGAAGAG+TGG 0.590029 2_3:-5131435 None:intergenic
TGCATTTGTAATGGAAAATG+GGG 0.611511 2_3:+5133766 Msa0273550:three_prime_UTR
TTAAAGCGACGACGCGCCAA+GGG 0.641870 2_3:+5133355 Msa0273550:CDS
TTTGAAGAAGCAGTGAAAGT+GGG 0.659697 2_3:-5131316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CACAATAAAATAAAAAAAAA+AGG - chr2_3:5131486-5131505 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG - chr2_3:5132180-5132199 None:intergenic 10.0%
!!! AGTAGAAAAATTATTTTAAT+TGG + chr2_3:5132383-5132402 Msa0273550:intron 10.0%
!! ATTTGAGAAAATAAAAAATT+TGG - chr2_3:5132922-5132941 None:intergenic 10.0%
!!! ACATGTTTTATTTTTGTTAT+TGG + chr2_3:5131736-5131755 Msa0273550:intron 15.0%
!!! TAAAACTTTTTTCTTTTTGT+TGG - chr2_3:5131793-5131812 None:intergenic 15.0%
!!! AAAGAAAAAAGTTTTATTGT+TGG + chr2_3:5131797-5131816 Msa0273550:intron 15.0%
!!! AAGAAAAAAGTTTTATTGTT+GGG + chr2_3:5131798-5131817 Msa0273550:intron 15.0%
!!! CACTTTTCATTTTTAAATTA+CGG + chr2_3:5132051-5132070 Msa0273550:intron 15.0%
!!! TTATTTTCTCAAATTATGAT+CGG + chr2_3:5132928-5132947 Msa0273550:intron 15.0%
!! ATATAGTTAAAAAATTTGTC+CGG + chr2_3:5133109-5133128 Msa0273550:intron 15.0%
!!! ATTTGCAATATAATACTTTT+AGG - chr2_3:5133438-5133457 None:intergenic 15.0%
!!! TAAAAGTATTATATTGCAAA+TGG + chr2_3:5133437-5133456 Msa0273550:three_prime_UTR 15.0%
!!! AAAAGTATTATATTGCAAAT+GGG + chr2_3:5133438-5133457 Msa0273550:three_prime_UTR 15.0%
!!! ACATGTTTTATTTTTGTTAT+TGG + chr2_3:5131736-5131755 Msa0273550:intron 15.0%
!!! TAAAACTTTTTTCTTTTTGT+TGG - chr2_3:5131793-5131812 None:intergenic 15.0%
!!! AAAGAAAAAAGTTTTATTGT+TGG + chr2_3:5131797-5131816 Msa0273550:intron 15.0%
!!! AAGAAAAAAGTTTTATTGTT+GGG + chr2_3:5131798-5131817 Msa0273550:intron 15.0%
!!! ATAGCGATTGAATTTTTAAT+TGG + chr2_3:5131532-5131551 Msa0273550:intron 20.0%
!! TTAAACATAATCTGATACTT+AGG - chr2_3:5131665-5131684 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG - chr2_3:5131733-5131752 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG + chr2_3:5131743-5131762 Msa0273550:intron 20.0%
!!! TCATTTAGTTACATTCTTTT+AGG + chr2_3:5131983-5132002 Msa0273550:intron 20.0%
!!! CATTTAGTTACATTCTTTTA+GGG + chr2_3:5131984-5132003 Msa0273550:intron 20.0%
!! ACAATAAGAAAATAACCTAA+GGG - chr2_3:5132237-5132256 None:intergenic 20.0%
!! AACAATAAGAAAATAACCTA+AGG - chr2_3:5132238-5132257 None:intergenic 20.0%
!! AAAAAACATTTCAATCTTAG+AGG - chr2_3:5132779-5132798 None:intergenic 20.0%
!! TTAAACATAATCTGATACTT+AGG - chr2_3:5131665-5131684 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG - chr2_3:5131733-5131752 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG + chr2_3:5131743-5131762 Msa0273550:intron 20.0%
! AACTCAAAAAAAGAGGATAA+TGG + chr2_3:5131243-5131262 Msa0273550:exon 25.0%
!! AAAGGAATTTGAGTTTGAAA+AGG - chr2_3:5131468-5131487 None:intergenic 25.0%
!!! CAAACTAGTTCTATTCAATT+CGG - chr2_3:5132317-5132336 None:intergenic 25.0%
! AAAACTGAATTGAAACATAC+CGG - chr2_3:5132349-5132368 None:intergenic 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_3:5132498-5132517 Msa0273550:intron 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_3:5132498-5132517 Msa0273550:intron 25.0%
! TCATTGTCAAGTTATTTACA+TGG - chr2_3:5132817-5132836 None:intergenic 25.0%
GTAGCAAAACTCAAAAAAAG+AGG + chr2_3:5131236-5131255 Msa0273550:five_prime_UTR 30.0%
CTGAATTTCATGGATATCAA+AGG - chr2_3:5131292-5131311 None:intergenic 30.0%
AAGGAAAAAGTTACCTGAAA+TGG - chr2_3:5131449-5131468 None:intergenic 30.0%
TTGAAATCTAACCGACATAA+AGG + chr2_3:5131574-5131593 Msa0273550:intron 30.0%
TAACCGACATAAAGGTTAAT+GGG + chr2_3:5131582-5131601 Msa0273550:intron 30.0%
AAACCCATTAACCTTTATGT+CGG - chr2_3:5131588-5131607 None:intergenic 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG + chr2_3:5131759-5131778 Msa0273550:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG + chr2_3:5131850-5131869 Msa0273550:intron 30.0%
TTATGCTTCTGCATTTGTAA+TGG + chr2_3:5131901-5131920 Msa0273550:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + chr2_3:5131908-5131927 Msa0273550:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + chr2_3:5131909-5131928 Msa0273550:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG + chr2_3:5131910-5131929 Msa0273550:intron 30.0%
TGTAACTAAATGAACAGCAT+AGG - chr2_3:5131976-5131995 None:intergenic 30.0%
! AACTAGTTTGAATGTAGTAC+CGG + chr2_3:5132327-5132346 Msa0273550:intron 30.0%
! TGTTGATATTGCTTTAGCTT+TGG + chr2_3:5132461-5132480 Msa0273550:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_3:5132517-5132536 Msa0273550:intron 30.0%
!!! CGTTTATTTTTGTGTTGGTT+TGG + chr2_3:5132522-5132541 Msa0273550:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_3:5132517-5132536 Msa0273550:intron 30.0%
GACTTCAATGATCTTTACAA+AGG - chr2_3:5132736-5132755 None:intergenic 30.0%
! CATTTCAATCTTAGAGGTAT+TGG - chr2_3:5132773-5132792 None:intergenic 30.0%
!!! AAATGTTTTTTCAACTGCCA+AGG + chr2_3:5132788-5132807 Msa0273550:intron 30.0%
AGTTATTTACATGGAATCCT+TGG - chr2_3:5132808-5132827 None:intergenic 30.0%
! ACTTCATGTCAAAGTTTGTT+TGG + chr2_3:5132866-5132885 Msa0273550:intron 30.0%
TTGTAGTTCCTTTGCAATAA+TGG + chr2_3:5133041-5133060 Msa0273550:intron 30.0%
AAATCAAGTCAAGCTAAATC+CGG - chr2_3:5133131-5133150 None:intergenic 30.0%
AAGTAGATCACGAAAATCAT+TGG + chr2_3:5133279-5133298 Msa0273550:CDS 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG + chr2_3:5131759-5131778 Msa0273550:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG + chr2_3:5131850-5131869 Msa0273550:intron 30.0%
TTATGCTTCTGCATTTGTAA+TGG + chr2_3:5131901-5131920 Msa0273550:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + chr2_3:5131908-5131927 Msa0273550:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + chr2_3:5131909-5131928 Msa0273550:intron 30.0%
! TGAGTTTTGCTACGTGTTTT+CGG - chr2_3:5131229-5131248 None:intergenic 35.0%
TTTGAAGAAGCAGTGAAAGT+GGG - chr2_3:5131319-5131338 None:intergenic 35.0%
!! TTTTGAAGAAGCAGTGAAAG+TGG - chr2_3:5131320-5131339 None:intergenic 35.0%
AAGCAATGGAGAACGAAATT+TGG - chr2_3:5131368-5131387 None:intergenic 35.0%
CTAACCGACATAAAGGTTAA+TGG + chr2_3:5131581-5131600 Msa0273550:intron 35.0%
GGTTTGATTGAACTTGACTA+TGG + chr2_3:5131819-5131838 Msa0273550:intron 35.0%
TTGATTGAACTTGACTATGG+TGG + chr2_3:5131822-5131841 Msa0273550:intron 35.0%
!!! ACATTCTTTTAGGGTGTGTT+TGG + chr2_3:5131993-5132012 Msa0273550:intron 35.0%
! AAATAACCTAAGGGTGTGTT+TGG - chr2_3:5132228-5132247 None:intergenic 35.0%
!! TGATATTGCTTTAGCTTTGG+TGG + chr2_3:5132464-5132483 Msa0273550:intron 35.0%
!!! ACGTTTATTTTTGTGTTGGC+TGG + chr2_3:5132569-5132588 Msa0273550:intron 35.0%
GCGACTTAAAGTAAGGAATT+TGG + chr2_3:5132643-5132662 Msa0273550:intron 35.0%
AAGTGTCAGTACTGCAAAAA+TGG - chr2_3:5132850-5132869 None:intergenic 35.0%
!! CAAATTATGATCGGTGTCAA+CGG + chr2_3:5132937-5132956 Msa0273550:intron 35.0%
!! AAATTATGATCGGTGTCAAC+GGG + chr2_3:5132938-5132957 Msa0273550:intron 35.0%
! GCTTTGTTGGAAATTGTATG+CGG + chr2_3:5132996-5133015 Msa0273550:intron 35.0%
! CAAAGCATCCATTATTGCAA+AGG - chr2_3:5133052-5133071 None:intergenic 35.0%
ATGCTTTGCTTGCAATTGTT+TGG + chr2_3:5133064-5133083 Msa0273550:intron 35.0%
TTGGACTTGAAACCTAATGT+TGG + chr2_3:5133187-5133206 Msa0273550:CDS 35.0%
! TTTTCGTGATCTACTTCTCT+TGG - chr2_3:5133275-5133294 None:intergenic 35.0%
GTGACTATTTGCCACTATTT+GGG - chr2_3:5133408-5133427 None:intergenic 35.0%
TGTGACTATTTGCCACTATT+TGG - chr2_3:5133409-5133428 None:intergenic 35.0%
GGTTTGATTGAACTTGACTA+TGG + chr2_3:5131819-5131838 Msa0273550:intron 35.0%
TTGATTGAACTTGACTATGG+TGG + chr2_3:5131822-5131841 Msa0273550:intron 35.0%
GAACTGAGAGAGATTGAAGA+TGG - chr2_3:5131343-5131362 None:intergenic 40.0%
CAATGGAGAACGAAATTTGG+AGG - chr2_3:5131365-5131384 None:intergenic 40.0%
AGAGGAAAGAGAAGAAGTGA+AGG - chr2_3:5131398-5131417 None:intergenic 40.0%
TTCCACTCTTCTTCCATTTC+AGG + chr2_3:5131433-5131452 Msa0273550:CDS 40.0%
TACCTGAAATGGAAGAAGAG+TGG - chr2_3:5131438-5131457 None:intergenic 40.0%
AAATGGGGTTGTGTTGTAAG+TGG + chr2_3:5131925-5131944 Msa0273550:intron 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr2_3:5132000-5132019 Msa0273550:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr2_3:5132001-5132020 Msa0273550:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_3:5132007-5132026 Msa0273550:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_3:5132011-5132030 Msa0273550:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_3:5132011-5132030 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_3:5132007-5132026 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr2_3:5132220-5132239 None:intergenic 40.0%
TCTCATCGCGACTTAAAGTA+AGG + chr2_3:5132636-5132655 Msa0273550:intron 40.0%
! GAAGTATTTCCATCTGACAC+AGG - chr2_3:5132705-5132724 None:intergenic 40.0%
!! TTTCCAACAAAGCACTGACA+CGG - chr2_3:5132989-5133008 None:intergenic 40.0%
! AAACTGATTTCTCCATGTCC+AGG + chr2_3:5133151-5133170 Msa0273550:intron 40.0%
TGTCTTCTAGGTCCAACATT+AGG - chr2_3:5133202-5133221 None:intergenic 40.0%
GTTGGACCTAGAAGACAAAA+TGG + chr2_3:5133205-5133224 Msa0273550:CDS 40.0%
! AGACGACCATTTTGTCTTCT+AGG - chr2_3:5133214-5133233 None:intergenic 40.0%
TAGAAGACAAAATGGTCGTC+TGG + chr2_3:5133213-5133232 Msa0273550:CDS 40.0%
TTGTTGTGCTCATTCGTTTG+CGG - chr2_3:5133321-5133340 None:intergenic 40.0%
AAACGAATGAGCACAACAAC+TGG + chr2_3:5133322-5133341 Msa0273550:CDS 40.0%
ACTATTTGCCACTATTTGGG+TGG - chr2_3:5133405-5133424 None:intergenic 40.0%
! AGTGGGTGCTCTGAATTTCA+TGG - chr2_3:5131302-5131321 None:intergenic 45.0%
GTGAAGGAGCAATGAAGCAA+TGG - chr2_3:5131382-5131401 None:intergenic 45.0%
GAAAGAGAGAGAAGAAGGAG+AGG - chr2_3:5131416-5131435 None:intergenic 45.0%
GAGTGGAAAGAGAGAGAAGA+AGG - chr2_3:5131421-5131440 None:intergenic 45.0%
ACTTGACTATGGTGGCTGTT+TGG + chr2_3:5131830-5131849 Msa0273550:intron 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG + chr2_3:5131838-5131857 Msa0273550:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_3:5132010-5132029 Msa0273550:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_3:5132012-5132031 Msa0273550:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_3:5132012-5132031 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_3:5132010-5132029 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - chr2_3:5132221-5132240 None:intergenic 45.0%
CTCAATCCAAACACACCCTT+AGG + chr2_3:5132219-5132238 Msa0273550:intron 45.0%
TCGTCGCTCTACTTTCTCTA+AGG + chr2_3:5132417-5132436 Msa0273550:intron 45.0%
! TGCTGTTTACCTGTGTCAGA+TGG + chr2_3:5132693-5132712 Msa0273550:intron 45.0%
AAATCATTGGCACGCACTCA+TGG + chr2_3:5133292-5133311 Msa0273550:CDS 45.0%
ACTTGACTATGGTGGCTGTT+TGG + chr2_3:5131830-5131849 Msa0273550:intron 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG + chr2_3:5131838-5131857 Msa0273550:intron 45.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr2_3:5132016-5132035 Msa0273550:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr2_3:5132017-5132036 Msa0273550:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - chr2_3:5132016-5132035 None:intergenic 50.0%
CGATGAGAGCAAGATGAGCA+TGG - chr2_3:5132624-5132643 None:intergenic 50.0%
TGTCCGTGTCAGTGCTTTGT+TGG + chr2_3:5132983-5133002 Msa0273550:intron 50.0%
TCCATGTCCAGGTTTGTCAC+TGG + chr2_3:5133162-5133181 Msa0273550:intron 50.0%
CCATGTCCAGGTTTGTCACT+GGG + chr2_3:5133163-5133182 Msa0273550:intron 50.0%
TCCAGGTTTGTCACTGGGAT+TGG + chr2_3:5133168-5133187 Msa0273550:intron 50.0%
TCCAATCCCAGTGACAAACC+TGG - chr2_3:5133172-5133191 None:intergenic 50.0%
CGTCTGGTTATAGTAGCAGC+AGG + chr2_3:5133229-5133248 Msa0273550:CDS 50.0%
! GCAAAGGACTTTTCGTCCCT+TGG - chr2_3:5133374-5133393 None:intergenic 50.0%
ACCAAGAGCCACCCAAATAG+TGG + chr2_3:5133394-5133413 Msa0273550:CDS 50.0%
GATTGAGGGTTTAGGAGGGG+AGG - chr2_3:5132015-5132034 None:intergenic 55.0%
CAACGGGTCAGTGTCGTGTA+TGG + chr2_3:5132954-5132973 Msa0273550:intron 55.0%
CCCAGTGACAAACCTGGACA+TGG - chr2_3:5133166-5133185 None:intergenic 55.0%
ATTAAAGCGACGACGCGCCA+AGG + chr2_3:5133354-5133373 Msa0273550:CDS 55.0%
TTAAAGCGACGACGCGCCAA+GGG + chr2_3:5133355-5133374 Msa0273550:CDS 55.0%
! TTGGGTGGCTCTTGGTGCAA+AGG - chr2_3:5133390-5133409 None:intergenic 55.0%
GCCACTATTTGGGTGGCTCT+TGG - chr2_3:5133398-5133417 None:intergenic 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr2_3:5132020-5132039 Msa0273550:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr2_3:5132021-5132040 Msa0273550:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr2_3:5132022-5132041 Msa0273550:intron 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr2_3:5132025-5132044 Msa0273550:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 5131210 5133788 5131210 ID=Msa0273550;Name=Msa0273550
chr2_3 mRNA 5131210 5133788 5131210 ID=Msa0273550-mRNA-1;Parent=Msa0273550;Name=Msa0273550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=52|1|1|1|1|1|2|365|147
chr2_3 exon 5131210 5131454 5131210 ID=Msa0273550-mRNA-1:exon:2495;Parent=Msa0273550-mRNA-1
chr2_3 exon 5133173 5133788 5133173 ID=Msa0273550-mRNA-1:exon:2496;Parent=Msa0273550-mRNA-1
chr2_3 five_prime_UTR 5131210 5131261 5131210 ID=Msa0273550-mRNA-1:five_prime_utr;Parent=Msa0273550-mRNA-1
chr2_3 CDS 5131262 5131454 5131262 ID=Msa0273550-mRNA-1:cds;Parent=Msa0273550-mRNA-1
chr2_3 CDS 5133173 5133423 5133173 ID=Msa0273550-mRNA-1:cds;Parent=Msa0273550-mRNA-1
chr2_3 three_prime_UTR 5133424 5133788 5133424 ID=Msa0273550-mRNA-1:three_prime_utr;Parent=Msa0273550-mRNA-1
Gene Sequence

>Msa0273550

ATGGCTTCGTTATCATCTTCTGTGTCTCCTTTGATATCCATGAAATTCAGAGCACCCACTTTCACTGCTTCTTCAAAACCATCTTCAATCTCTCTCAGTTCCTCCAAATTTCGTTCTCCATTGCTTCATTGCTCCTTCACTTCTTCTCTTTCCTCTCCTTCTTCTCTCTCTTTCCACTCTTCTTCCATTTCAGGTTTGTCACTGGGATTGGACTTGAAACCTAATGTTGGACCTAGAAGACAAAATGGTCGTCTGGTTATAGTAGCAGCAGGCAGACAAGCTCTTTGTCTAACCAAGAGAAGTAGATCACGAAAATCATTGGCACGCACTCATGGCTTCCGCAAACGAATGAGCACAACAACTGGAAGAGCTGTATTAAAGCGACGACGCGCCAAGGGACGAAAAGTCCTTTGCACCAAGAGCCACCCAAATAGTGGCAAATAG

Protein sequence

>Msa0273550

MASLSSSVSPLISMKFRAPTFTASSKPSSISLSSSKFRSPLLHCSFTSSLSSPSSLSFHSSSISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQALCLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHPNSGK*