Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0414020 | Msa0485890 | 0.813856 | 2.071228e-51 | -8.615850e-47 |
| Msa0444040 | Msa0485890 | 0.838301 | 3.119262e-57 | -8.615850e-47 |
| Msa0485890 | Msa0990830 | 0.899672 | 1.571403e-77 | -8.615850e-47 |
| Msa0485890 | Msa1020100 | 0.905805 | 2.912093e-80 | -8.615850e-47 |
| Msa0485890 | Msa1059310 | 0.922034 | 1.661175e-88 | -8.615850e-47 |
| Msa0485890 | Msa1226100 | 0.989366 | 8.182676e-178 | -8.615850e-47 |
| Msa0485890 | Msa1284640 | 0.917952 | 2.833458e-86 | -8.615850e-47 |
| Msa0485890 | Msa1320580 | 0.902965 | 5.648424e-79 | -8.615850e-47 |
| Msa0485890 | Msa1448020 | 0.811931 | 5.468994e-51 | -8.615850e-47 |
| Msa0485890 | Msa1455280 | 0.821885 | 3.183234e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTTAATTGACAATATT+TGG | 0.125399 | 3_4:+3710029 | None:intergenic |
| ATTAAAACTTAAGAATTAAT+TGG | 0.153202 | 3_4:-3706996 | Msa0485890:three_prime_UTR |
| AACGGAATGGGTTAAAATTA+TGG | 0.195683 | 3_4:+3709854 | None:intergenic |
| AAAATGGGGTTTCATGGTTT+TGG | 0.235392 | 3_4:+3709979 | None:intergenic |
| AACAAGGGTGGTAGAGATTT+AGG | 0.237128 | 3_4:+3709924 | None:intergenic |
| GAAGGGAAGCATGTGTTTAT+TGG | 0.254125 | 3_4:-3709480 | Msa0485890:three_prime_UTR |
| TTTGTAGACCTTCAAGTTAT+AGG | 0.264756 | 3_4:-3706964 | Msa0485890:three_prime_UTR |
| AAGCATGTGTTTATTGGATT+AGG | 0.266751 | 3_4:-3709474 | Msa0485890:three_prime_UTR |
| ACTCTTCACATTAATGCTTT+TGG | 0.278094 | 3_4:-3710052 | None:intergenic |
| AGTGAGATTGAGGAATAAAA+TGG | 0.312064 | 3_4:+3709963 | None:intergenic |
| AGGAATAAAATGGGGTTTCA+TGG | 0.315510 | 3_4:+3709973 | None:intergenic |
| CAAGTTATAGGTTATCCTAT+TGG | 0.318712 | 3_4:-3706952 | Msa0485890:three_prime_UTR |
| AGCATGTGTTTATTGGATTA+GGG | 0.332772 | 3_4:-3709473 | Msa0485890:three_prime_UTR |
| CTTGTCCTATATATATGTTT+TGG | 0.337556 | 3_4:+3709749 | None:intergenic |
| TTCTTCCAAAACATATATAT+AGG | 0.349435 | 3_4:-3709754 | Msa0485890:exon |
| CTTCTAAAGATTGTGTATAA+TGG | 0.357548 | 3_4:-3707204 | Msa0485890:intron |
| GAGCAACTGTAGAAAAGAAA+TGG | 0.357579 | 3_4:+3709785 | None:intergenic |
| TTAAAACTTAAGAATTAATT+GGG | 0.366320 | 3_4:-3706995 | Msa0485890:three_prime_UTR |
| GGTGAGAGCTTAAATGAAAC+TGG | 0.376751 | 3_4:+3709876 | None:intergenic |
| AATACCTATGACTTGCGTTT+TGG | 0.377633 | 3_4:+3708202 | None:intergenic |
| GAGATTTAGGTTTCAATTTG+AGG | 0.394504 | 3_4:+3709937 | None:intergenic |
| AGAAGCTAATGACCAACTTA+AGG | 0.395849 | 3_4:-3707376 | Msa0485890:three_prime_UTR |
| ACGGAATGGGTTAAAATTAT+GGG | 0.402922 | 3_4:+3709855 | None:intergenic |
| TGTGGGAACGAGACTGGAAT+TGG | 0.409476 | 3_4:+3710005 | None:intergenic |
| AGTATTATCAATCATCCAAT+AGG | 0.414360 | 3_4:+3706937 | None:intergenic |
| TGCTGTTAATCATAGGCTTA+AGG | 0.419472 | 3_4:-3709344 | Msa0485890:intron |
| TGGAGTTGTGGGAACGAGAC+TGG | 0.421945 | 3_4:+3709999 | None:intergenic |
| GTGAGATTGAGGAATAAAAT+GGG | 0.426659 | 3_4:+3709964 | None:intergenic |
| AACTGAACCCTCACACTGAC+CGG | 0.431437 | 3_4:+3709554 | None:intergenic |
| TGTGAGAAGAGAACATGATA+AGG | 0.442504 | 3_4:-3709391 | Msa0485890:three_prime_UTR |
| GAAGCTAATGACCAACTTAA+GGG | 0.443177 | 3_4:-3707375 | Msa0485890:intron |
| GCTTAAATGAAACTGGATAA+AGG | 0.443636 | 3_4:+3709883 | None:intergenic |
| TTTCTGCTTAAGATTGAAGA+TGG | 0.446632 | 3_4:-3709504 | Msa0485890:three_prime_UTR |
| AGCGAAGAGATCGCCGGAGT+TGG | 0.447638 | 3_4:+3709593 | None:intergenic |
| GCGTTGTGTCCCGCCGTGAC+CGG | 0.447886 | 3_4:-3709638 | Msa0485890:three_prime_UTR |
| GTGTGAGGGTTCAGTTGAAC+TGG | 0.448765 | 3_4:-3709547 | Msa0485890:three_prime_UTR |
| TAGGATAACCTATAACTTGA+AGG | 0.448867 | 3_4:+3706956 | None:intergenic |
| ACTGCCAAAACGCAAGTCAT+AGG | 0.449501 | 3_4:-3708206 | Msa0485890:intron |
| AGATTTAGGTTTCAATTTGA+GGG | 0.451063 | 3_4:+3709938 | None:intergenic |
| GCGAAGAGATCGCCGGAGTT+GGG | 0.452093 | 3_4:+3709594 | None:intergenic |
| GTTTATTGGATTAGGGTTAA+CGG | 0.452324 | 3_4:-3709466 | Msa0485890:three_prime_UTR |
| CGCCGGAGGTTGTTCGTGGC+GGG | 0.452665 | 3_4:+3709715 | None:intergenic |
| AAAGGCATGTGTTACGTCAA+TGG | 0.457053 | 3_4:-3707255 | Msa0485890:three_prime_UTR |
| GCCATCCTGCTGTTAATCAT+AGG | 0.463255 | 3_4:-3709351 | Msa0485890:three_prime_UTR |
| GGTTCCAATCAGACAAGATC+TGG | 0.463783 | 3_4:-3709674 | Msa0485890:three_prime_UTR |
| AGAGAACATGATAAGGAGTC+TGG | 0.464167 | 3_4:-3709384 | Msa0485890:three_prime_UTR |
| GCCGTGACCGGTGTGAGATA+CGG | 0.467324 | 3_4:-3709626 | Msa0485890:three_prime_UTR |
| GGACACAACGCGGAGACGGC+CGG | 0.477578 | 3_4:+3709650 | None:intergenic |
| TTTGAGGGAAAGTGAGATTG+AGG | 0.478972 | 3_4:+3709953 | None:intergenic |
| ATCCCGCCACGAACAACCTC+CGG | 0.483393 | 3_4:-3709717 | Msa0485890:three_prime_UTR |
| TTAGGCAAATCAACAACTGC+TGG | 0.486080 | 3_4:-3707065 | Msa0485890:intron |
| TAACCGCCGGAGGTTGTTCG+TGG | 0.487228 | 3_4:+3709711 | None:intergenic |
| CGGACCAGATCTTGTCTGAT+TGG | 0.492781 | 3_4:+3709670 | None:intergenic |
| TAAAGTCATTACCCTTAAGT+TGG | 0.492910 | 3_4:+3707364 | None:intergenic |
| TTTCAATTTGAATTGTACTC+TGG | 0.494796 | 3_4:-3706869 | Msa0485890:three_prime_UTR |
| GCGGTTACAAATGCGGCTAA+TGG | 0.502661 | 3_4:-3709695 | Msa0485890:three_prime_UTR |
| AGAAAAGAAATGGGTCGAAA+AGG | 0.503425 | 3_4:+3709795 | None:intergenic |
| CAATCAGACAAGATCTGGTC+CGG | 0.506501 | 3_4:-3709669 | Msa0485890:three_prime_UTR |
| GGCGGGACACAACGCGGAGA+CGG | 0.509066 | 3_4:+3709646 | None:intergenic |
| GATTAACAGCAGGATGGCAT+TGG | 0.514115 | 3_4:+3709356 | None:intergenic |
| AGCAACTGTAGAAAAGAAAT+GGG | 0.514548 | 3_4:+3709786 | None:intergenic |
| AGTGAAGAACGGTGGAGAAA+CGG | 0.515942 | 3_4:+3709836 | None:intergenic |
| CTTAAGATTGAAGATGGAGA+AGG | 0.523506 | 3_4:-3709498 | Msa0485890:three_prime_UTR |
| AGATTTAGCCTGTCGAGTGA+TGG | 0.527799 | 3_4:-3708235 | Msa0485890:three_prime_UTR |
| ACCGTATCTCACACCGGTCA+CGG | 0.531370 | 3_4:+3709625 | None:intergenic |
| CATAATCCTTCGATTGAACA+AGG | 0.536572 | 3_4:+3709908 | None:intergenic |
| TATCTCACACCGGTCACGGC+GGG | 0.540870 | 3_4:+3709629 | None:intergenic |
| GTAATGTTCCATCACTCGAC+AGG | 0.545474 | 3_4:+3708227 | None:intergenic |
| ACAGGAGTTGAAGTAGAGAA+AGG | 0.547321 | 3_4:-3707424 | Msa0485890:intron |
| ACTGAACCCTCACACTGACC+GGG | 0.558637 | 3_4:+3709555 | None:intergenic |
| TACCACCCTTGTTCAATCGA+AGG | 0.561434 | 3_4:-3709914 | Msa0485890:five_prime_UTR |
| GAACGGTGGAGAAACGGAAT+GGG | 0.566786 | 3_4:+3709842 | None:intergenic |
| CCGCCGGAGGTTGTTCGTGG+CGG | 0.571890 | 3_4:+3709714 | None:intergenic |
| TCAACAACTGCTGGTGTACG+TGG | 0.580588 | 3_4:-3707056 | Msa0485890:three_prime_UTR |
| AGAACGGTGGAGAAACGGAA+TGG | 0.592306 | 3_4:+3709841 | None:intergenic |
| TTGGATTAGGGTTAACGGAG+AGG | 0.594029 | 3_4:-3709461 | Msa0485890:three_prime_UTR |
| TTAAGATTGAAGATGGAGAA+GGG | 0.597144 | 3_4:-3709497 | Msa0485890:three_prime_UTR |
| TTAAGCCTATGATTAACAGC+AGG | 0.600310 | 3_4:+3709346 | None:intergenic |
| TGAGATTGAGGAATAAAATG+GGG | 0.611914 | 3_4:+3709965 | None:intergenic |
| GCCGCATTTGTAACCGCCGG+AGG | 0.612310 | 3_4:+3709701 | None:intergenic |
| ACCTCCGGCGGTTACAAATG+CGG | 0.616884 | 3_4:-3709702 | Msa0485890:three_prime_UTR |
| TTAGCCGCATTTGTAACCGC+CGG | 0.625611 | 3_4:+3709698 | None:intergenic |
| ACACGCAGCGAAGAGATCGC+CGG | 0.626051 | 3_4:+3709587 | None:intergenic |
| ATCCTTCGATTGAACAAGGG+TGG | 0.639676 | 3_4:+3709912 | None:intergenic |
| GCCTATGATTAACAGCAGGA+TGG | 0.640269 | 3_4:+3709350 | None:intergenic |
| TTCAGCACTGCTAAGACTCG+AGG | 0.650870 | 3_4:-3707024 | Msa0485890:three_prime_UTR |
| CGGTTAGAAGATCCCAACTC+CGG | 0.656754 | 3_4:-3709606 | Msa0485890:three_prime_UTR |
| CAACAAAGAGTGAAGAACGG+TGG | 0.678077 | 3_4:+3709828 | None:intergenic |
| CTTCTAACCGTATCTCACAC+CGG | 0.687609 | 3_4:+3709619 | None:intergenic |
| GAACAACAAAGAGTGAAGAA+CGG | 0.690550 | 3_4:+3709825 | None:intergenic |
| CCGCCACGAACAACCTCCGG+CGG | 0.697916 | 3_4:-3709714 | Msa0485890:three_prime_UTR |
| GGTCACGGCGGGACACAACG+CGG | 0.706808 | 3_4:+3709640 | None:intergenic |
| ATAATCCTTCGATTGAACAA+GGG | 0.716702 | 3_4:+3709909 | None:intergenic |
| GTATCTCACACCGGTCACGG+CGG | 0.748302 | 3_4:+3709628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAACTTAAGAATTAAT+TGG | - | chr3_4:3709849-3709868 | Msa0485890:CDS | 10.0% |
| !! | TTAAAACTTAAGAATTAATT+GGG | - | chr3_4:3709850-3709869 | Msa0485890:CDS | 10.0% |
| !! | AAAGTTTAATTGACAATATT+TGG | + | chr3_4:3706819-3706838 | None:intergenic | 15.0% |
| !!! | ACTATTTTTCAACTAAAAAT+TGG | + | chr3_4:3707590-3707609 | None:intergenic | 15.0% |
| !! | AACTTAAACTTTGTAAAAAT+AGG | - | chr3_4:3707683-3707702 | Msa0485890:intron | 15.0% |
| !! | TACAATTAGAAAATTGAATA+AGG | + | chr3_4:3708280-3708299 | None:intergenic | 15.0% |
| !! | TTATAAAAAAATGAGACATA+AGG | - | chr3_4:3708338-3708357 | Msa0485890:intron | 15.0% |
| !! | TATAAAAAAATGAGACATAA+GGG | - | chr3_4:3708339-3708358 | Msa0485890:intron | 15.0% |
| !!! | TATATATGTTTTGGAAGAAA+AGG | + | chr3_4:3707090-3707109 | None:intergenic | 20.0% |
| !! | TTCTTCCAAAACATATATAT+AGG | - | chr3_4:3707091-3707110 | Msa0485890:intron | 20.0% |
| !!! | CTTTATTTCGAATTTGTTAA+TGG | - | chr3_4:3709295-3709314 | Msa0485890:intron | 20.0% |
| !!! | AACAATTTTTATGCCATTAA+CGG | - | chr3_4:3709538-3709557 | Msa0485890:three_prime_UTR | 20.0% |
| !!! | ATTTTGTACAAAAAAACACA+AGG | + | chr3_4:3709743-3709762 | None:intergenic | 20.0% |
| !!! | GTTAGATTTTATGTTTTTGA+TGG | - | chr3_4:3709941-3709960 | Msa0485890:five_prime_UTR | 20.0% |
| !! | AGATTTAGGTTTCAATTTGA+GGG | + | chr3_4:3706910-3706929 | None:intergenic | 25.0% |
| !! | CTTGTCCTATATATATGTTT+TGG | + | chr3_4:3707099-3707118 | None:intergenic | 25.0% |
| !! | TATGCATAAAATTTGTTTCC+AGG | - | chr3_4:3707647-3707666 | Msa0485890:intron | 25.0% |
| !! | ATGCATAAAATTTGTTTCCA+GGG | - | chr3_4:3707648-3707667 | Msa0485890:intron | 25.0% |
| !! | TATTTCTTAGTTGGTACATT+TGG | - | chr3_4:3707893-3707912 | Msa0485890:intron | 25.0% |
| !! | ATTTCTTAGTTGGTACATTT+GGG | - | chr3_4:3707894-3707913 | Msa0485890:intron | 25.0% |
| ! | TGTTACTATAGTTGAATACA+AGG | - | chr3_4:3707999-3708018 | Msa0485890:intron | 25.0% |
| ! | CTAATATGTGAATAATCAAG+CGG | - | chr3_4:3708103-3708122 | Msa0485890:intron | 25.0% |
| !! | TAATATGACTTGTGAAATGA+AGG | - | chr3_4:3708305-3708324 | Msa0485890:intron | 25.0% |
| !! | AATATGACTTGTGAAATGAA+GGG | - | chr3_4:3708306-3708325 | Msa0485890:intron | 25.0% |
| !! | ACATTTTACTGAAGAAATTC+AGG | + | chr3_4:3708957-3708976 | None:intergenic | 25.0% |
| !!! | TATATATGCTTTGTTTTGAC+AGG | + | chr3_4:3709045-3709064 | None:intergenic | 25.0% |
| ! | CAAAGCATATATATACGTAT+TGG | - | chr3_4:3709052-3709071 | Msa0485890:intron | 25.0% |
| ! | CTGAAATTAGAGTTCAAAAA+GGG | - | chr3_4:3709343-3709362 | Msa0485890:intron | 25.0% |
| !! | CTTCTAAAGATTGTGTATAA+TGG | - | chr3_4:3709641-3709660 | Msa0485890:three_prime_UTR | 25.0% |
| !! | TTTTGTACAAAATCAAACCT+TGG | - | chr3_4:3709750-3709769 | Msa0485890:exon | 25.0% |
| ! | AGTATTATCAATCATCCAAT+AGG | + | chr3_4:3709911-3709930 | None:intergenic | 25.0% |
| !!! | TATGTTTTTGATGGAACTAT+TGG | - | chr3_4:3709950-3709969 | Msa0485890:five_prime_UTR | 25.0% |
| ! | TTTCAATTTGAATTGTACTC+TGG | - | chr3_4:3709976-3709995 | Msa0485890:five_prime_UTR | 25.0% |
| TGAGATTGAGGAATAAAATG+GGG | + | chr3_4:3706883-3706902 | None:intergenic | 30.0% | |
| GTGAGATTGAGGAATAAAAT+GGG | + | chr3_4:3706884-3706903 | None:intergenic | 30.0% | |
| AGTGAGATTGAGGAATAAAA+TGG | + | chr3_4:3706885-3706904 | None:intergenic | 30.0% | |
| ! | GAGATTTAGGTTTCAATTTG+AGG | + | chr3_4:3706911-3706930 | None:intergenic | 30.0% |
| ATAATCCTTCGATTGAACAA+GGG | + | chr3_4:3706939-3706958 | None:intergenic | 30.0% | |
| GCTTAAATGAAACTGGATAA+AGG | + | chr3_4:3706965-3706984 | None:intergenic | 30.0% | |
| !! | ACGGAATGGGTTAAAATTAT+GGG | + | chr3_4:3706993-3707012 | None:intergenic | 30.0% |
| !! | AACGGAATGGGTTAAAATTA+TGG | + | chr3_4:3706994-3707013 | None:intergenic | 30.0% |
| AGCAACTGTAGAAAAGAAAT+GGG | + | chr3_4:3707062-3707081 | None:intergenic | 30.0% | |
| TTTCTGCTTAAGATTGAAGA+TGG | - | chr3_4:3707341-3707360 | Msa0485890:intron | 30.0% | |
| TTAAGATTGAAGATGGAGAA+GGG | - | chr3_4:3707348-3707367 | Msa0485890:intron | 30.0% | |
| AAGCATGTGTTTATTGGATT+AGG | - | chr3_4:3707371-3707390 | Msa0485890:intron | 30.0% | |
| AGCATGTGTTTATTGGATTA+GGG | - | chr3_4:3707372-3707391 | Msa0485890:intron | 30.0% | |
| ! | GTTTATTGGATTAGGGTTAA+CGG | - | chr3_4:3707379-3707398 | Msa0485890:three_prime_UTR | 30.0% |
| ! | TCTCATGTTTGTGAACTTTT+AGG | - | chr3_4:3707741-3707760 | Msa0485890:intron | 30.0% |
| TTGCTGTGATATTTCTTAGT+TGG | - | chr3_4:3707884-3707903 | Msa0485890:intron | 30.0% | |
| AGTAACACATGTAAAGAGAA+GGG | + | chr3_4:3707986-3708005 | Msa0485900:three_prime_UTR | 30.0% | |
| TAGTAACACATGTAAAGAGA+AGG | + | chr3_4:3707987-3708006 | Msa0485900:three_prime_UTR | 30.0% | |
| GTCTTAAAAGACAACACAAA+TGG | - | chr3_4:3708078-3708097 | Msa0485890:intron | 30.0% | |
| GTTGCAAGCTATAAACTATA+AGG | - | chr3_4:3708490-3708509 | Msa0485890:intron | 30.0% | |
| CAGAAAATTGAATGAACAGA+CGG | + | chr3_4:3708579-3708598 | None:intergenic | 30.0% | |
| TTATAATACGTACTCTGTGT+CGG | + | chr3_4:3708757-3708776 | None:intergenic | 30.0% | |
| CAATTTCTTCTGTCAATATC+TGG | - | chr3_4:3708849-3708868 | Msa0485890:intron | 30.0% | |
| AACTAATGAAGTTACCTCTT+GGG | + | chr3_4:3709220-3709239 | None:intergenic | 30.0% | |
| AAACTAATGAAGTTACCTCT+TGG | + | chr3_4:3709221-3709240 | None:intergenic | 30.0% | |
| AAGAGGTAACTTCATTAGTT+TGG | - | chr3_4:3709220-3709239 | Msa0485890:intron | 30.0% | |
| GCTGAAATTAGAGTTCAAAA+AGG | - | chr3_4:3709342-3709361 | Msa0485890:intron | 30.0% | |
| TAAAGTCATTACCCTTAAGT+TGG | + | chr3_4:3709484-3709503 | None:intergenic | 30.0% | |
| TCTGCTTTGATAGAGAAAAA+AGG | - | chr3_4:3709572-3709591 | Msa0485890:three_prime_UTR | 30.0% | |
| TCAAACCTTGGATATTTCTT+AGG | - | chr3_4:3709762-3709781 | Msa0485890:CDS | 30.0% | |
| ATTTGCCTAAGAAATATCCA+AGG | + | chr3_4:3709770-3709789 | None:intergenic | 30.0% | |
| ! | TTTGTAGACCTTCAAGTTAT+AGG | - | chr3_4:3709881-3709900 | Msa0485890:CDS | 30.0% |
| TAGGATAACCTATAACTTGA+AGG | + | chr3_4:3709892-3709911 | None:intergenic | 30.0% | |
| CAAGTTATAGGTTATCCTAT+TGG | - | chr3_4:3709893-3709912 | Msa0485890:exon | 30.0% | |
| !!! | TTTCATGGTTTTGGAGTTGT+GGG | + | chr3_4:3706860-3706879 | None:intergenic | 35.0% |
| ! | AAAATGGGGTTTCATGGTTT+TGG | + | chr3_4:3706869-3706888 | None:intergenic | 35.0% |
| AGGAATAAAATGGGGTTTCA+TGG | + | chr3_4:3706875-3706894 | None:intergenic | 35.0% | |
| CATAATCCTTCGATTGAACA+AGG | + | chr3_4:3706940-3706959 | None:intergenic | 35.0% | |
| GAACAACAAAGAGTGAAGAA+CGG | + | chr3_4:3707023-3707042 | None:intergenic | 35.0% | |
| AGAAAAGAAATGGGTCGAAA+AGG | + | chr3_4:3707053-3707072 | None:intergenic | 35.0% | |
| GAGCAACTGTAGAAAAGAAA+TGG | + | chr3_4:3707063-3707082 | None:intergenic | 35.0% | |
| CTTAAGATTGAAGATGGAGA+AGG | - | chr3_4:3707347-3707366 | Msa0485890:intron | 35.0% | |
| TGTGAGAAGAGAACATGATA+AGG | - | chr3_4:3707454-3707473 | Msa0485890:intron | 35.0% | |
| TTAAGCCTATGATTAACAGC+AGG | + | chr3_4:3707502-3707521 | None:intergenic | 35.0% | |
| TGCTGTTAATCATAGGCTTA+AGG | - | chr3_4:3707501-3707520 | Msa0485890:intron | 35.0% | |
| ! | TAGACATTGGTTAGACACAT+GGG | + | chr3_4:3707716-3707735 | Msa0485900:CDS | 35.0% |
| ! | ATAGACATTGGTTAGACACA+TGG | + | chr3_4:3707717-3707736 | Msa0485900:CDS | 35.0% |
| ACATGAGACAGTATAGACAT+TGG | + | chr3_4:3707729-3707748 | Msa0485900:CDS | 35.0% | |
| TATAGTTGAATACAAGGTCG+TGG | - | chr3_4:3708005-3708024 | Msa0485890:intron | 35.0% | |
| AGACATAAGGGCTAAAAGAA+AGG | - | chr3_4:3708351-3708370 | Msa0485890:intron | 35.0% | |
| TGATATGCATGTTAAGAACG+AGG | + | chr3_4:3708401-3708420 | None:intergenic | 35.0% | |
| CAACACATATATCTTTCCTC+AGG | + | chr3_4:3708463-3708482 | None:intergenic | 35.0% | |
| !! | AATACCTATGACTTGCGTTT+TGG | + | chr3_4:3708646-3708665 | None:intergenic | 35.0% |
| TCATATGCACATTCAGAAAG+AGG | + | chr3_4:3708686-3708705 | None:intergenic | 35.0% | |
| ATTGACACACATTCGTAAAG+AGG | + | chr3_4:3708833-3708852 | None:intergenic | 35.0% | |
| TTCTTCTGTCAATATCTGGA+TGG | - | chr3_4:3708853-3708872 | Msa0485890:intron | 35.0% | |
| ! | GTCTTTTCTGATATGTTCTG+CGG | - | chr3_4:3708875-3708894 | Msa0485890:intron | 35.0% |
| !!! | TTTTAGAACCTACGCTTCAA+TGG | + | chr3_4:3708927-3708946 | None:intergenic | 35.0% |
| AGCTCTCTTGAAATAGTGTT+AGG | - | chr3_4:3709192-3709211 | Msa0485890:intron | 35.0% | |
| ! | AGGTAACTTCATTAGTTTGG+TGG | - | chr3_4:3709223-3709242 | Msa0485890:intron | 35.0% |
| AAAAGGGCTATGATATCATC+AGG | - | chr3_4:3709359-3709378 | Msa0485890:three_prime_UTR | 35.0% | |
| AAAGGGCTATGATATCATCA+GGG | - | chr3_4:3709360-3709379 | Msa0485890:three_prime_UTR | 35.0% | |
| AGAAGCTAATGACCAACTTA+AGG | - | chr3_4:3709469-3709488 | Msa0485890:three_prime_UTR | 35.0% | |
| GAAGCTAATGACCAACTTAA+GGG | - | chr3_4:3709470-3709489 | Msa0485890:three_prime_UTR | 35.0% | |
| CTTAAACATGTGTACACCAA+AGG | + | chr3_4:3709709-3709728 | None:intergenic | 35.0% | |
| !!! | GTTTCATGGTTTTGGAGTTG+TGG | + | chr3_4:3706861-3706880 | None:intergenic | 40.0% |
| TTTGAGGGAAAGTGAGATTG+AGG | + | chr3_4:3706895-3706914 | None:intergenic | 40.0% | |
| AACAAGGGTGGTAGAGATTT+AGG | + | chr3_4:3706924-3706943 | None:intergenic | 40.0% | |
| GGTGAGAGCTTAAATGAAAC+TGG | + | chr3_4:3706972-3706991 | None:intergenic | 40.0% | |
| ! | GAAGGGAAGCATGTGTTTAT+TGG | - | chr3_4:3707365-3707384 | Msa0485890:intron | 40.0% |
| AGAGAACATGATAAGGAGTC+TGG | - | chr3_4:3707461-3707480 | Msa0485890:intron | 40.0% | |
| !! | TTTGTTTCCAGGGTACTGTT+AGG | - | chr3_4:3707658-3707677 | Msa0485890:intron | 40.0% |
| GTAAGACAGTTGAAGAAGTG+TGG | + | chr3_4:3707945-3707964 | Msa0485900:intron | 40.0% | |
| CTGTCTTACATCACATCTCA+AGG | - | chr3_4:3707956-3707975 | Msa0485890:intron | 40.0% | |
| TTTCAACCAAATGAGCTCAC+AGG | + | chr3_4:3708040-3708059 | None:intergenic | 40.0% | |
| CTCATGAAAAAACAGACCAG+AGG | + | chr3_4:3708141-3708160 | None:intergenic | 40.0% | |
| ATTCCTTCTAATGCAACCTG+AGG | - | chr3_4:3708444-3708463 | Msa0485890:intron | 40.0% | |
| ! | TTTCCTCAGGTTGCATTAGA+AGG | + | chr3_4:3708450-3708469 | None:intergenic | 40.0% |
| CTCTGATTATCTTTAGCGAC+AGG | - | chr3_4:3708722-3708741 | Msa0485890:intron | 40.0% | |
| TTGCAAAACCATTGAAGCGT+AGG | - | chr3_4:3708916-3708935 | Msa0485890:intron | 40.0% | |
| TGCTATGCTCATTCAGATAG+AGG | + | chr3_4:3708982-3709001 | None:intergenic | 40.0% | |
| AATAGTGTTAGGAACCCAAG+AGG | - | chr3_4:3709203-3709222 | Msa0485890:intron | 40.0% | |
| TGATATCATCAGGGTGAGTT+TGG | - | chr3_4:3709369-3709388 | Msa0485890:three_prime_UTR | 40.0% | |
| ! | CTAGTTGTTCTTTTGTCGAC+AGG | - | chr3_4:3709403-3709422 | Msa0485890:three_prime_UTR | 40.0% |
| ACAGGAGTTGAAGTAGAGAA+AGG | - | chr3_4:3709421-3709440 | Msa0485890:three_prime_UTR | 40.0% | |
| GATGATGCTTTCACCGTTAA+TGG | + | chr3_4:3709554-3709573 | None:intergenic | 40.0% | |
| ! | AAAGGCATGTGTTACGTCAA+TGG | - | chr3_4:3709590-3709609 | Msa0485890:three_prime_UTR | 40.0% |
| TGATAGCTTGACATTGCCTT+TGG | - | chr3_4:3709690-3709709 | Msa0485890:three_prime_UTR | 40.0% | |
| TTAGGCAAATCAACAACTGC+TGG | - | chr3_4:3709780-3709799 | Msa0485890:CDS | 40.0% | |
| TACCACCCTTGTTCAATCGA+AGG | - | chr3_4:3706931-3706950 | Msa0485890:three_prime_UTR | 45.0% | |
| ATCCTTCGATTGAACAAGGG+TGG | + | chr3_4:3706936-3706955 | None:intergenic | 45.0% | |
| AGTGAAGAACGGTGGAGAAA+CGG | + | chr3_4:3707012-3707031 | None:intergenic | 45.0% | |
| CAACAAAGAGTGAAGAACGG+TGG | + | chr3_4:3707020-3707039 | None:intergenic | 45.0% | |
| GGTTCCAATCAGACAAGATC+TGG | - | chr3_4:3707171-3707190 | Msa0485890:intron | 45.0% | |
| CAATCAGACAAGATCTGGTC+CGG | - | chr3_4:3707176-3707195 | Msa0485890:intron | 45.0% | |
| CTTCTAACCGTATCTCACAC+CGG | + | chr3_4:3707229-3707248 | None:intergenic | 45.0% | |
| !!! | GCTGCGTGTTTTGTTTTTCC+CGG | - | chr3_4:3707272-3707291 | Msa0485890:intron | 45.0% |
| ! | TTGGATTAGGGTTAACGGAG+AGG | - | chr3_4:3707384-3707403 | Msa0485890:three_prime_UTR | 45.0% |
| GATTAACAGCAGGATGGCAT+TGG | + | chr3_4:3707492-3707511 | None:intergenic | 45.0% | |
| GCCATCCTGCTGTTAATCAT+AGG | - | chr3_4:3707494-3707513 | Msa0485890:intron | 45.0% | |
| GCCTATGATTAACAGCAGGA+TGG | + | chr3_4:3707498-3707517 | None:intergenic | 45.0% | |
| AAGTTTGCCTAACAGTACCC+TGG | + | chr3_4:3707668-3707687 | None:intergenic | 45.0% | |
| TGAATACAAGGTCGTGGCAT+TGG | - | chr3_4:3708011-3708030 | Msa0485890:intron | 45.0% | |
| AGATTTAGCCTGTCGAGTGA+TGG | - | chr3_4:3708610-3708629 | Msa0485890:intron | 45.0% | |
| GTAATGTTCCATCACTCGAC+AGG | + | chr3_4:3708621-3708640 | None:intergenic | 45.0% | |
| ACTGCCAAAACGCAAGTCAT+AGG | - | chr3_4:3708639-3708658 | Msa0485890:intron | 45.0% | |
| !!! | ACTTTAAAATAATATTTTAT+TGG | - | chr3_4:3708189-3708208 | Msa0485890:intron | 5.0% |
| !!! | TTTTTAACAATATTATATTT+TGG | + | chr3_4:3709101-3709120 | None:intergenic | 5.0% |
| TGTGGGAACGAGACTGGAAT+TGG | + | chr3_4:3706843-3706862 | None:intergenic | 50.0% | |
| GAACGGTGGAGAAACGGAAT+GGG | + | chr3_4:3707006-3707025 | None:intergenic | 50.0% | |
| AGAACGGTGGAGAAACGGAA+TGG | + | chr3_4:3707007-3707026 | None:intergenic | 50.0% | |
| TTAGCCGCATTTGTAACCGC+CGG | + | chr3_4:3707150-3707169 | None:intergenic | 50.0% | |
| GCGGTTACAAATGCGGCTAA+TGG | - | chr3_4:3707150-3707169 | Msa0485890:intron | 50.0% | |
| CGGACCAGATCTTGTCTGAT+TGG | + | chr3_4:3707178-3707197 | None:intergenic | 50.0% | |
| CGGTTAGAAGATCCCAACTC+CGG | - | chr3_4:3707239-3707258 | Msa0485890:three_prime_UTR | 50.0% | |
| ! | TGTTTTTCCCGGTCAGTGTG+AGG | - | chr3_4:3707283-3707302 | Msa0485890:intron | 50.0% |
| ! | GTTTTTCCCGGTCAGTGTGA+GGG | - | chr3_4:3707284-3707303 | Msa0485890:intron | 50.0% |
| AACTGAACCCTCACACTGAC+CGG | + | chr3_4:3707294-3707313 | None:intergenic | 50.0% | |
| GTGTGAGGGTTCAGTTGAAC+TGG | - | chr3_4:3707298-3707317 | Msa0485890:intron | 50.0% | |
| TGGACAACGACAACACTCGA+CGG | + | chr3_4:3707925-3707944 | Msa0485900:intron | 50.0% | |
| TGGTGACCTGTGAGCTCATT+TGG | - | chr3_4:3708031-3708050 | Msa0485890:intron | 50.0% | |
| GCGGCATTGCATATTACCTC+TGG | - | chr3_4:3708122-3708141 | Msa0485890:intron | 50.0% | |
| GACGGACATGCATGTGCAAA+AGG | + | chr3_4:3708561-3708580 | None:intergenic | 50.0% | |
| ! | CGTACTCTGTGTCGGTACAA+AGG | + | chr3_4:3708749-3708768 | None:intergenic | 50.0% |
| TCAACAACTGCTGGTGTACG+TGG | - | chr3_4:3709789-3709808 | Msa0485890:CDS | 50.0% | |
| TTCAGCACTGCTAAGACTCG+AGG | - | chr3_4:3709821-3709840 | Msa0485890:CDS | 50.0% | |
| TGGAGTTGTGGGAACGAGAC+TGG | + | chr3_4:3706849-3706868 | None:intergenic | 55.0% | |
| ACCTCCGGCGGTTACAAATG+CGG | - | chr3_4:3707143-3707162 | Msa0485890:intron | 55.0% | |
| ACCGTATCTCACACCGGTCA+CGG | + | chr3_4:3707223-3707242 | None:intergenic | 55.0% | |
| ACTGAACCCTCACACTGACC+GGG | + | chr3_4:3707293-3707312 | None:intergenic | 55.0% | |
| ATCCCGCCACGAACAACCTC+CGG | - | chr3_4:3707128-3707147 | Msa0485890:intron | 60.0% | |
| TAACCGCCGGAGGTTGTTCG+TGG | + | chr3_4:3707137-3707156 | None:intergenic | 60.0% | |
| TATCTCACACCGGTCACGGC+GGG | + | chr3_4:3707219-3707238 | None:intergenic | 60.0% | |
| GTATCTCACACCGGTCACGG+CGG | + | chr3_4:3707220-3707239 | None:intergenic | 60.0% | |
| GCCGTGACCGGTGTGAGATA+CGG | - | chr3_4:3707219-3707238 | Msa0485890:three_prime_UTR | 60.0% | |
| GCGAAGAGATCGCCGGAGTT+GGG | + | chr3_4:3707254-3707273 | None:intergenic | 60.0% | |
| AGCGAAGAGATCGCCGGAGT+TGG | + | chr3_4:3707255-3707274 | None:intergenic | 60.0% | |
| ACACGCAGCGAAGAGATCGC+CGG | + | chr3_4:3707261-3707280 | None:intergenic | 60.0% | |
| GCCGCATTTGTAACCGCCGG+AGG | + | chr3_4:3707147-3707166 | None:intergenic | 65.0% | |
| CGCCGGAGGTTGTTCGTGGC+GGG | + | chr3_4:3707133-3707152 | None:intergenic | 70.0% | |
| CCGCCGGAGGTTGTTCGTGG+CGG | + | chr3_4:3707134-3707153 | None:intergenic | 70.0% | |
| CCGCCACGAACAACCTCCGG+CGG | - | chr3_4:3707131-3707150 | Msa0485890:intron | 70.0% | |
| GGACACAACGCGGAGACGGC+CGG | + | chr3_4:3707198-3707217 | None:intergenic | 70.0% | |
| GGCGGGACACAACGCGGAGA+CGG | + | chr3_4:3707202-3707221 | None:intergenic | 70.0% | |
| GGTCACGGCGGGACACAACG+CGG | + | chr3_4:3707208-3707227 | None:intergenic | 70.0% | |
| GCGTTGTGTCCCGCCGTGAC+CGG | - | chr3_4:3707207-3707226 | Msa0485890:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3706802 | 3710065 | 3706802 | ID=Msa0485890;Name=Msa0485890 |
| chr3_4 | mRNA | 3706802 | 3710065 | 3706802 | ID=Msa0485890-mRNA-1;Parent=Msa0485890;Name=Msa0485890-mRNA-1;_AED=0.27;_eAED=0.27;_QI=155|0.75|1|1|0|0|5|886|51 |
| chr3_4 | exon | 3706802 | 3707083 | 3706802 | ID=Msa0485890-mRNA-1:exon:1406;Parent=Msa0485890-mRNA-1 |
| chr3_4 | exon | 3707205 | 3707282 | 3707205 | ID=Msa0485890-mRNA-1:exon:1405;Parent=Msa0485890-mRNA-1 |
| chr3_4 | exon | 3707376 | 3707442 | 3707376 | ID=Msa0485890-mRNA-1:exon:1404;Parent=Msa0485890-mRNA-1 |
| chr3_4 | exon | 3708207 | 3708255 | 3708207 | ID=Msa0485890-mRNA-1:exon:1403;Parent=Msa0485890-mRNA-1 |
| chr3_4 | exon | 3709345 | 3710065 | 3709345 | ID=Msa0485890-mRNA-1:exon:1402;Parent=Msa0485890-mRNA-1 |
| chr3_4 | five_prime_UTR | 3709911 | 3710065 | 3709911 | ID=Msa0485890-mRNA-1:five_prime_utr;Parent=Msa0485890-mRNA-1 |
| chr3_4 | CDS | 3709755 | 3709910 | 3709755 | ID=Msa0485890-mRNA-1:cds;Parent=Msa0485890-mRNA-1 |
| chr3_4 | three_prime_UTR | 3709345 | 3709754 | 3709345 | ID=Msa0485890-mRNA-1:three_prime_utr;Parent=Msa0485890-mRNA-1 |
| chr3_4 | three_prime_UTR | 3708207 | 3708255 | 3708207 | ID=Msa0485890-mRNA-1:three_prime_utr;Parent=Msa0485890-mRNA-1 |
| chr3_4 | three_prime_UTR | 3707376 | 3707442 | 3707376 | ID=Msa0485890-mRNA-1:three_prime_utr;Parent=Msa0485890-mRNA-1 |
| chr3_4 | three_prime_UTR | 3707205 | 3707282 | 3707205 | ID=Msa0485890-mRNA-1:three_prime_utr;Parent=Msa0485890-mRNA-1 |
| chr3_4 | three_prime_UTR | 3706802 | 3707083 | 3706802 | ID=Msa0485890-mRNA-1:three_prime_utr;Parent=Msa0485890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
