AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455280 MtrunA17_Chr2g0303321 95.652 230 10 0 1 230 628 857 1.25e-152 449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455280 AT4G19490.1 56.198 242 90 3 2 230 649 887 1.47e-74 244
Msa1455280 AT4G19490.2 56.198 242 90 3 2 230 649 887 1.47e-74 244

Find 112 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTTCTTCAACACAATT+AGG 0.163364 tig0035657:-4749 Msa1455280:intergenic
ATTTCAATATATAGTTATTT+AGG 0.207794 tig0035657:-7727 Msa1455280:intergenic
CCATTGGATGCATTGTCTTC+TGG 0.211350 tig0035657:+4722 Msa1455280:CDS
TTACATAGTAGTGTATTAAT+TGG 0.213590 tig0035657:+7273 Msa1455280:three_prime_UTR
TGTAAGATGGGCAAAGCTTC+TGG 0.226028 tig0035657:+4253 Msa1455280:five_prime_UTR
GATTTACTATGACCTCTATT+TGG 0.232799 tig0035657:-4890 Msa1455280:intergenic
GATTTACAATTCCTCATATA+AGG 0.242498 tig0035657:+7243 Msa1455280:CDS
TATTCAGTTAGGAACCTTAT+TGG 0.270945 tig0035657:-7543 Msa1455280:intergenic
TTCAAACAGTTACCATGATT+TGG 0.290772 tig0035657:+4772 Msa1455280:CDS
AGGTATCGGGTGGTATTGAT+AGG 0.304808 tig0035657:-7772 Msa1455280:intergenic
TGACAAAATGTGATAGAAAA+TGG 0.307825 tig0035657:+7846 Msa1455280:three_prime_UTR
TATCTTCTTCAACACAATTA+GGG 0.309663 tig0035657:-4748 Msa1455280:intergenic
CTAAATTGTGTTCAGGTGTC+TGG 0.311583 tig0035657:+6791 Msa1455280:intron
TACCACGAACCTCACTTTCT+TGG 0.314639 tig0035657:-3025 Msa1455280:intergenic
TTCATACATGCTATTATTCC+TGG 0.325788 tig0035657:+6866 Msa1455280:CDS
ATGCAATATTTGTATTCATT+AGG 0.341909 tig0035657:-7682 Msa1455280:intergenic
ACAAACTCAAATAATCTGTT+AGG 0.364563 tig0035657:-7792 Msa1455280:intergenic
TTTATATAAATAAGACCATT+TGG 0.366027 tig0035657:-7591 Msa1455280:intergenic
CTATCTCCACCCATGTTTCC+TGG 0.367597 tig0035657:-4658 Msa1455280:intergenic
TGCAGTAATTTGTATTGATT+AGG 0.370535 tig0035657:-7642 Msa1455280:intergenic
TGCCAGCGCCAGGTGTTTAG+AGG 0.373233 tig0035657:-6828 Msa1455280:intergenic
GGTCTTATTTATATAAACTA+AGG 0.375175 tig0035657:+7597 Msa1455280:three_prime_UTR
CATTTCTGGTGTAAGAAATT+CGG 0.375373 tig0035657:+6991 Msa1455280:intron
ACCACGAACCTCACTTTCTT+GGG 0.379718 tig0035657:-3024 Msa1455280:intergenic
CTAACAGATTGGTGGAAGAT+TGG 0.380927 tig0035657:+4448 Msa1455280:intron
GAACATGTCAACTTGTGCTT+GGG 0.388495 tig0035657:+5679 Msa1455280:CDS
TATTGATTAGGAGTGGTTAC+AGG 0.397265 tig0035657:-7630 Msa1455280:intergenic
AAATTAATAGATATTATGTT+AGG 0.398692 tig0035657:+7392 Msa1455280:three_prime_UTR
TTGGTTATCACATGGTAAAC+TGG 0.405375 tig0035657:+4981 Msa1455280:CDS
TCCCTACTGTTGTTGCCAAA+TGG 0.419633 tig0035657:+7576 Msa1455280:three_prime_UTR
GTAAGATGGGCAAAGCTTCT+GGG 0.422472 tig0035657:+4254 Msa1455280:five_prime_UTR
TAACAGATTGGTGGAAGATT+GGG 0.423692 tig0035657:+4449 Msa1455280:intron
TTGATTGTCAGCATGATTCT+CGG 0.424026 tig0035657:+4516 Msa1455280:five_prime_UTR
TCAAATAATCTGTTAGGTAT+CGG 0.424668 tig0035657:-7786 Msa1455280:intergenic
AGAATGAGAATTATTCAGTT+AGG 0.428574 tig0035657:-7554 Msa1455280:intergenic
CCAACACCTTTGTAGAAAAG+AGG 0.433653 tig0035657:-4962 Msa1455280:intergenic
AGAAATATTGTAATAGAGGA+AGG 0.440446 tig0035657:+7366 Msa1455280:three_prime_UTR
TCCGTGAAAAGATGGACCCT+TGG 0.445255 tig0035657:-3084 Msa1455280:intergenic
CAAATAATCTGTTAGGTATC+GGG 0.453542 tig0035657:-7785 Msa1455280:intergenic
CGCCAGGTGTTTAGAGGTGA+TGG 0.456248 tig0035657:-6822 Msa1455280:intergenic
ATAATGGATTGAAATTCATC+AGG 0.457894 tig0035657:-4686 Msa1455280:intergenic
GTTGCTCAAAATCCATTCAA+TGG 0.459861 tig0035657:-2931 Msa1455280:intergenic
TGTATTCATTAGGAGCAGTT+AGG 0.461706 tig0035657:-7672 Msa1455280:intergenic
ATTTGGTTTCTTAGATTCAT+CGG 0.461938 tig0035657:-4873 Msa1455280:intergenic
CAAAGGAAAAGTAGAGGGAT+TGG 0.466005 tig0035657:-7334 Msa1455280:intergenic
CTGTAGCTGTAATGAACTCA+TGG 0.467812 tig0035657:-4340 Msa1455280:intergenic
TGATTGTCAGCATGATTCTC+GGG 0.478005 tig0035657:+4517 Msa1455280:five_prime_UTR
TGACTTGACTTGCCAGCGCC+AGG 0.481429 tig0035657:-6838 Msa1455280:intergenic
CATTGTTAGTCGCCAAATCA+TGG 0.493682 tig0035657:-4784 Msa1455280:intergenic
CCATCCTAGGTTGAAACTGC+AGG 0.501496 tig0035657:+4292 Msa1455280:five_prime_UTR
AGAACATGTCAACTTGTGCT+TGG 0.502388 tig0035657:+5678 Msa1455280:CDS
GCTGATAAAGTGCAAACCAT+TGG 0.505684 tig0035657:-2826 Msa1455280:intergenic
GACTGTCCAGTGTCTGCCAT+CGG 0.509078 tig0035657:-4815 Msa1455280:intergenic
CTGAAGATAGTGCTGGCAAA+AGG 0.511487 tig0035657:-5611 Msa1455280:intergenic
CTGACAATCAATAAAAGCCT+TGG 0.511746 tig0035657:-4504 Msa1455280:intergenic
AAATATTGTAATAGAGGAAG+GGG 0.521907 tig0035657:+7368 Msa1455280:three_prime_UTR
CCACTCAAAGGAAAAGTAGA+GGG 0.522711 tig0035657:-7339 Msa1455280:intergenic
GTGATGCTGCTCATGTAAGA+TGG 0.530343 tig0035657:+4240 Msa1455280:intron
CACCTCTAAACACCTGGCGC+TGG 0.532318 tig0035657:+6826 Msa1455280:CDS
GCTCGGCCGATGGCAGACAC+TGG 0.534162 tig0035657:+4809 Msa1455280:CDS
ACTGAAATTTACCTTTCCAA+TGG 0.534821 tig0035657:+2810 None:intergenic
CCTGCAGTTTCAACCTAGGA+TGG 0.534902 tig0035657:-4292 Msa1455280:intergenic
GAATCTAAGAAACCAAATAG+AGG 0.536720 tig0035657:+4878 Msa1455280:CDS
GTCTTATTTATATAAACTAA+GGG 0.546964 tig0035657:+7598 Msa1455280:three_prime_UTR
GAAATATTGTAATAGAGGAA+GGG 0.548667 tig0035657:+7367 Msa1455280:three_prime_UTR
TCATTGCAAGGGAGACTACA+TGG 0.548928 tig0035657:-7307 Msa1455280:intergenic
CAGTGCATGACCAGGAAACA+TGG 0.550225 tig0035657:+4648 Msa1455280:CDS
ACCTCAAAAGAATGTTGCCA+AGG 0.555014 tig0035657:+3067 Msa1455280:five_prime_UTR
AGACATTGATCGAGTTGCGC+AGG 0.555484 tig0035657:+7064 Msa1455280:CDS
ATTGCAGGCACATTTAGTGC+GGG 0.556696 tig0035657:+2890 Msa1455280:five_prime_UTR
GACCATTTGGCAACAACAGT+AGG 0.560981 tig0035657:-7578 Msa1455280:intergenic
GCTTGGGGCTAAAGCAATGC+AGG 0.562696 tig0035657:+5695 Msa1455280:CDS
TCCACTCAAAGGAAAAGTAG+AGG 0.563123 tig0035657:-7340 Msa1455280:intergenic
TCCGTGCTACTCTCCATCCT+AGG 0.564248 tig0035657:+4279 Msa1455280:five_prime_UTR
CTGTGGGATACTGCATTCAC+AGG 0.565991 tig0035657:+4481 Msa1455280:five_prime_UTR
CCAGAAGACAATGCATCCAA+TGG 0.565992 tig0035657:-4722 Msa1455280:intergenic
AATTAAAACTAACAGATTGG+TGG 0.567362 tig0035657:+4440 Msa1455280:intron
ACCATTTGGCAACAACAGTA+GGG 0.567455 tig0035657:-7577 Msa1455280:intergenic
TAACAATGATGCTCGGCCGA+TGG 0.569587 tig0035657:+4799 Msa1455280:CDS
CTAAAGTGCTGAGTAACTGA+AGG 0.576601 tig0035657:+7820 Msa1455280:three_prime_UTR
TAAGATGGGCAAAGCTTCTG+GGG 0.577135 tig0035657:+4255 Msa1455280:five_prime_UTR
ACAACTTCTGAAGATAGTGC+TGG 0.578492 tig0035657:-5618 Msa1455280:intergenic
AATTATGGCAGTGCATGACC+AGG 0.579081 tig0035657:+4640 Msa1455280:exon
GGTATCGGGTGGTATTGATA+GGG 0.579270 tig0035657:-7771 Msa1455280:intergenic
GTCCATCACCTCTAAACACC+TGG 0.580720 tig0035657:+6820 Msa1455280:CDS
GCAGGCACATTTAGTGCGGG+CGG 0.584583 tig0035657:+2893 Msa1455280:five_prime_UTR
AGATTGGGATACAGCATCTG+TGG 0.587890 tig0035657:+4464 Msa1455280:five_prime_UTR
TAATTTGTATTGATTAGGAG+TGG 0.592339 tig0035657:-7637 Msa1455280:intergenic
TCCCAAGAAAGTGAGGTTCG+TGG 0.593161 tig0035657:+3023 Msa1455280:five_prime_UTR
CAAAGGTGTTGGTTATCACA+TGG 0.608161 tig0035657:+4973 Msa1455280:CDS
GATACTGCATTCACAGGCCA+AGG 0.608690 tig0035657:+4487 Msa1455280:five_prime_UTR
GGGATTGGAGAATCATTGCA+AGG 0.608732 tig0035657:-7319 Msa1455280:intergenic
GTTGCTGCAGCAATTGCACA+TGG 0.609105 tig0035657:+2981 Msa1455280:five_prime_UTR
TGATGCTGCTCATGTAAGAT+GGG 0.611393 tig0035657:+4241 Msa1455280:intron
GATTGCAGGCACATTTAGTG+CGG 0.612804 tig0035657:+2889 Msa1455280:five_prime_UTR
AACTCCTGCAGTTTCAACCT+AGG 0.615419 tig0035657:-4296 Msa1455280:intergenic
AGAAATATCCCAAGAAAGTG+AGG 0.616680 tig0035657:+3016 Msa1455280:five_prime_UTR
GATTGGGATACAGCATCTGT+GGG 0.627470 tig0035657:+4465 Msa1455280:five_prime_UTR
CCTCAAAAGAATGTTGCCAA+GGG 0.627962 tig0035657:+3068 Msa1455280:five_prime_UTR
GGATTGGAGAATCATTGCAA+GGG 0.631385 tig0035657:-7318 Msa1455280:intergenic
TTCAGAAGTTGTTCTCCGTG+TGG 0.635037 tig0035657:+5629 Msa1455280:CDS
AGAGAGATGTCTCTTCTCTG+AGG 0.638428 tig0035657:-7509 Msa1455280:intergenic
AACATGTCAACTTGTGCTTG+GGG 0.638733 tig0035657:+5680 Msa1455280:CDS
ACCTAGGATGGAGAGTAGCA+CGG 0.649176 tig0035657:-4280 Msa1455280:intergenic
TGGCGACTAACAATGATGCT+CGG 0.651360 tig0035657:+4792 Msa1455280:CDS
TGGTTTCTTAGATTCATCGG+TGG 0.656971 tig0035657:-4870 Msa1455280:intergenic
GCATGACCAGGAAACATGGG+TGG 0.660980 tig0035657:+4652 Msa1455280:CDS
ACTTCAAGATTTCTACCACA+CGG 0.672850 tig0035657:-5644 Msa1455280:intergenic
ATAATCTGTTAGGTATCGGG+TGG 0.673521 tig0035657:-7782 Msa1455280:intergenic
TGTAGCTGTAATGAACTCAT+GGG 0.683392 tig0035657:-4339 Msa1455280:intergenic
AGTGCATGACCAGGAAACAT+GGG 0.683888 tig0035657:+4649 Msa1455280:CDS
AAGATGGGCAAAGCTTCTGG+GGG 0.726966 tig0035657:+4256 Msa1455280:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAGTTTTTATATCTAAA+AGG - tig0035657:5753-5772 Msa1455280:intergenic 10.0%
!! AAATTAATAGATATTATGTT+AGG + tig0035657:7392-7411 Msa1455280:three_prime_UTR 10.0%
!! ATTTCAATATATAGTTATTT+AGG - tig0035657:7730-7749 Msa1455280:intergenic 10.0%
!!! GAAATTTTTTGATATATTTG+AGG - tig0035657:3132-3151 Msa1455280:intergenic 15.0%
!! CAAATATATCAAAAAATTTC+AGG + tig0035657:3132-3151 Msa1455280:five_prime_UTR 15.0%
!!! AAAAATTTCAGGTTAAATAT+AGG + tig0035657:3143-3162 Msa1455280:intron 15.0%
!! TCTCTTAAAAAATATGATAA+TGG + tig0035657:4004-4023 Msa1455280:intron 15.0%
!! CTCTTAAAAAATATGATAAT+GGG + tig0035657:4005-4024 Msa1455280:intron 15.0%
!!! TCTTAAAAAATATGATAATG+GGG + tig0035657:4006-4025 Msa1455280:intron 15.0%
!!! AAAAGTACATATTTTCATTT+TGG + tig0035657:4364-4383 Msa1455280:intron 15.0%
!! AGTTTATATTTCAAATTATG+TGG + tig0035657:4392-4411 Msa1455280:intron 15.0%
!! AAACAATATATAAAACACAA+CGG - tig0035657:4564-4583 Msa1455280:intergenic 15.0%
!!! AACTGAAAAATAACAATTTT+GGG - tig0035657:5310-5329 Msa1455280:intergenic 15.0%
!!! AAACTGAAAAATAACAATTT+TGG - tig0035657:5311-5330 Msa1455280:intergenic 15.0%
!! AAAGTTGAAAATAATAACTT+GGG - tig0035657:5396-5415 Msa1455280:intergenic 15.0%
!!! AAGTTATTATTTTCAACTTT+GGG + tig0035657:5396-5415 Msa1455280:intron 15.0%
!! AAGAGAAAAATTTATTGTAT+TGG - tig0035657:5893-5912 Msa1455280:intergenic 15.0%
!!! ATATTAGGTTTTTATCAAAT+TGG - tig0035657:6125-6144 Msa1455280:intergenic 15.0%
!! ATTTCAGATATGAATATATT+AGG - tig0035657:6140-6159 Msa1455280:intergenic 15.0%
!!! ATATCTGAAATAGAAAATAA+TGG + tig0035657:6149-6168 Msa1455280:intron 15.0%
!! AAAAAGAAATATTGTAATAG+AGG + tig0035657:7362-7381 Msa1455280:three_prime_UTR 15.0%
!! TTTATATAAATAAGACCATT+TGG - tig0035657:7594-7613 Msa1455280:intergenic 15.0%
!!! GTCTTATTTATATAAACTAA+GGG + tig0035657:7598-7617 Msa1455280:three_prime_UTR 15.0%
!!! AATTATATCTTTTAACAACA+TGG + tig0035657:7964-7983 Msa1455280:three_prime_UTR 15.0%
!!! ATTATATCTTTTAACAACAT+GGG + tig0035657:7965-7984 Msa1455280:three_prime_UTR 15.0%
!!! TAGTAATTTTTCTGTTTTAG+AGG + tig0035657:3913-3932 Msa1455280:intron 20.0%
!!! CTTAAAAAATATGATAATGG+GGG + tig0035657:4007-4026 Msa1455280:intron 20.0%
!! CAATTAAAACACAAAAGTAA+TGG - tig0035657:4131-4150 Msa1455280:intergenic 20.0%
!! TTGAGAACATGAAATAAATT+GGG - tig0035657:4157-4176 Msa1455280:intergenic 20.0%
!! TTTGAGAACATGAAATAAAT+TGG - tig0035657:4158-4177 Msa1455280:intergenic 20.0%
!!! CAATCTGTTAGTTTTAATTT+GGG - tig0035657:4439-4458 Msa1455280:intergenic 20.0%
!!! ACTGAAAAATAACAATTTTG+GGG - tig0035657:5309-5328 Msa1455280:intergenic 20.0%
!! CAAAGTTGAAAATAATAACT+TGG - tig0035657:5397-5416 Msa1455280:intergenic 20.0%
!!! CAAGTTATTATTTTCAACTT+TGG + tig0035657:5395-5414 Msa1455280:intron 20.0%
!! AAATTAACCGTATTAACTAT+TGG - tig0035657:5442-5461 Msa1455280:intergenic 20.0%
!!! ATAAGTTAGAATCAATTTTC+AGG + tig0035657:5991-6010 Msa1455280:intron 20.0%
!!! TAAGTTAGAATCAATTTTCA+GGG + tig0035657:5992-6011 Msa1455280:intron 20.0%
!!! TGGTTTTATTGGAAATATTT+TGG - tig0035657:6285-6304 Msa1455280:intergenic 20.0%
!! AAACTCTAGTTAATTGAAAT+GGG - tig0035657:6744-6763 Msa1455280:intergenic 20.0%
!! AAAACTCTAGTTAATTGAAA+TGG - tig0035657:6745-6764 Msa1455280:intergenic 20.0%
!!! ATTTTTTCTAAATTGTGTTC+AGG + tig0035657:6784-6803 Msa1455280:intron 20.0%
!! ACATTCAAAAAACTTAATAC+AGG - tig0035657:6906-6925 Msa1455280:intergenic 20.0%
!!! TTTATGAAATTGTTGTTACA+CGG + tig0035657:6942-6961 Msa1455280:intron 20.0%
!! TTACATAGTAGTGTATTAAT+TGG + tig0035657:7273-7292 Msa1455280:three_prime_UTR 20.0%
!!! TCTTTTGTTTCTCTTTAATT+CGG - tig0035657:7421-7440 Msa1455280:intergenic 20.0%
!!! GGTCTTATTTATATAAACTA+AGG + tig0035657:7597-7616 Msa1455280:three_prime_UTR 20.0%
!! ATGCAATATTTGTATTCATT+AGG - tig0035657:7685-7704 Msa1455280:intergenic 20.0%
!!! TTTTTCTTTTTAGTGATTGC+AGG + tig0035657:2875-2894 Msa1455280:five_prime_UTR 25.0%
! AAGCATGTAATTTATGATGT+AGG + tig0035657:3230-3249 Msa1455280:intron 25.0%
! ACTGTTGATACTTTATTGAA+TGG + tig0035657:3407-3426 Msa1455280:intron 25.0%
! CAAATGTAATATATTGAACG+AGG + tig0035657:3433-3452 Msa1455280:intron 25.0%
! TACGAATAAGGATTCTATAA+AGG - tig0035657:3465-3484 Msa1455280:intergenic 25.0%
! TTTATAGAATCCTTATTCGT+AGG + tig0035657:3464-3483 Msa1455280:intron 25.0%
! TTGACATATAAATAGTGTTC+TGG - tig0035657:3505-3524 Msa1455280:intergenic 25.0%
!!! GTTTTACACTAAAAGCATTA+TGG + tig0035657:3575-3594 Msa1455280:intron 25.0%
! GATAAGATAAAACATTTGAG+AGG - tig0035657:3877-3896 Msa1455280:intergenic 25.0%
! AACAGAAAAATTACTACTGA+AGG - tig0035657:3909-3928 Msa1455280:intergenic 25.0%
!!! AAGTACTGTATTTCTTTTAC+TGG + tig0035657:3948-3967 Msa1455280:intron 25.0%
! TTTCATGTTCTCAAAAAATC+TGG + tig0035657:4163-4182 Msa1455280:intron 25.0%
!!! CCAATCTGTTAGTTTTAATT+TGG - tig0035657:4440-4459 Msa1455280:intergenic 25.0%
! CCAAATTAAAACTAACAGAT+TGG + tig0035657:4437-4456 Msa1455280:intron 25.0%
! AATTAAAACTAACAGATTGG+TGG + tig0035657:4440-4459 Msa1455280:intron 25.0%
! CATTTAGGTGTCAAAAATTA+TGG + tig0035657:4625-4644 Msa1455280:intron 25.0%
!!! ATAATGGATTGAAATTCATC+AGG - tig0035657:4689-4708 Msa1455280:intergenic 25.0%
! TATCTTCTTCAACACAATTA+GGG - tig0035657:4751-4770 Msa1455280:intergenic 25.0%
! TTATCTTCTTCAACACAATT+AGG - tig0035657:4752-4771 Msa1455280:intergenic 25.0%
!! ATTTGGTTTCTTAGATTCAT+CGG - tig0035657:4876-4895 Msa1455280:intergenic 25.0%
! AATAGAAGTTGCATACAATA+GGG - tig0035657:5043-5062 Msa1455280:intergenic 25.0%
! AACAATTATTATGGAACAGA+AGG - tig0035657:5264-5283 Msa1455280:intergenic 25.0%
! CGCAAATGTAACAATTATTA+TGG - tig0035657:5273-5292 Msa1455280:intergenic 25.0%
!! CTGAAAAATAACAATTTTGG+GGG - tig0035657:5308-5327 Msa1455280:intergenic 25.0%
! GAATCAACCAATAGTTAATA+CGG + tig0035657:5432-5451 Msa1455280:intron 25.0%
!! TGTATTGTTCTCTGAATTTT+TGG + tig0035657:5725-5744 Msa1455280:intron 25.0%
! TGATTTCTGCAAAAGAATTT+AGG + tig0035657:5811-5830 Msa1455280:intron 25.0%
!! AAGTTAGAATCAATTTTCAG+GGG + tig0035657:5993-6012 Msa1455280:intron 25.0%
! AAAAAAACAAAATGGAAGCA+TGG - tig0035657:6055-6074 Msa1455280:intergenic 25.0%
! AATAAATATTAGAAGCTCCA+AGG + tig0035657:6082-6101 Msa1455280:intron 25.0%
!!! TGGTAATAGAATGGTTTTAT+TGG - tig0035657:6296-6315 Msa1455280:intergenic 25.0%
!!! CTTTTTTCTTGGTAATAGAA+TGG - tig0035657:6305-6324 Msa1455280:intergenic 25.0%
! TTACCAAGAAAAAAGATGAT+AGG + tig0035657:6310-6329 Msa1455280:intron 25.0%
!!! TATGAAAATATTTTGGGCAA+CGG - tig0035657:6345-6364 Msa1455280:intergenic 25.0%
!!! TATAATAGATGAGTTTTGGA+GGG - tig0035657:6388-6407 Msa1455280:intergenic 25.0%
!!! TTATAATAGATGAGTTTTGG+AGG - tig0035657:6389-6408 Msa1455280:intergenic 25.0%
!! CTGTTATAATAGATGAGTTT+TGG - tig0035657:6392-6411 Msa1455280:intergenic 25.0%
! ACATTAGTTGAAATCTGATA+GGG - tig0035657:6509-6528 Msa1455280:intergenic 25.0%
! ATGCTGAGTTAAAAAATTCA+CGG + tig0035657:6617-6636 Msa1455280:intron 25.0%
! AACAACAATTTCATAAACTC+TGG - tig0035657:6939-6958 Msa1455280:intergenic 25.0%
! ATAACTTTGTTCTTCATTTC+TGG + tig0035657:6977-6996 Msa1455280:intron 25.0%
!! AATAGCAATTTTCTATTCTC+TGG - tig0035657:7038-7057 Msa1455280:intergenic 25.0%
!! TTTTCAATGAATATCTTTGC+TGG + tig0035657:7167-7186 Msa1455280:intron 25.0%
! GATTTACAATTCCTCATATA+AGG + tig0035657:7243-7262 Msa1455280:CDS 25.0%
!! GTAAATTTTCACCTTATATG+AGG - tig0035657:7257-7276 Msa1455280:intergenic 25.0%
!! ATATTTCTTTTTCCACTCAA+AGG - tig0035657:7354-7373 Msa1455280:intergenic 25.0%
! AGAAATATTGTAATAGAGGA+AGG + tig0035657:7366-7385 Msa1455280:three_prime_UTR 25.0%
! GAAATATTGTAATAGAGGAA+GGG + tig0035657:7367-7386 Msa1455280:three_prime_UTR 25.0%
! AAATATTGTAATAGAGGAAG+GGG + tig0035657:7368-7387 Msa1455280:three_prime_UTR 25.0%
!!! CTTTTGTTTCTCTTTAATTC+GGG - tig0035657:7420-7439 Msa1455280:intergenic 25.0%
! AGAATGAGAATTATTCAGTT+AGG - tig0035657:7557-7576 Msa1455280:intergenic 25.0%
!!! TAATTTGTATTGATTAGGAG+TGG - tig0035657:7640-7659 Msa1455280:intergenic 25.0%
!!! TGCAGTAATTTGTATTGATT+AGG - tig0035657:7645-7664 Msa1455280:intergenic 25.0%
! TCAAATAATCTGTTAGGTAT+CGG - tig0035657:7789-7808 Msa1455280:intergenic 25.0%
! ACAAACTCAAATAATCTGTT+AGG - tig0035657:7795-7814 Msa1455280:intergenic 25.0%
! TGACAAAATGTGATAGAAAA+TGG + tig0035657:7846-7865 Msa1455280:three_prime_UTR 25.0%
AAGTGAAAAAAGCCATTGAA+TGG + tig0035657:2919-2938 Msa1455280:five_prime_UTR 30.0%
!!! ACATTCTTTTGAGGTGAATA+TGG - tig0035657:3062-3081 Msa1455280:intergenic 30.0%
TTGGTCTAATACACTTGTAA+TGG + tig0035657:3170-3189 Msa1455280:intron 30.0%
!! CTTGTAATGGAAAGTTTTTC+TGG + tig0035657:3183-3202 Msa1455280:intron 30.0%
! GGATTCTTTTGTGTTTAGAT+TGG + tig0035657:3204-3223 Msa1455280:intron 30.0%
TATACTCCATTAGTGAGTTT+AGG - tig0035657:3281-3300 Msa1455280:intergenic 30.0%
AAAAAGAGTTCCTACGAATA+AGG - tig0035657:3477-3496 Msa1455280:intergenic 30.0%
!!! AGCCTGGTTTTTAAAATGAT+GGG - tig0035657:3607-3626 Msa1455280:intergenic 30.0%
!!! TAGCCTGGTTTTTAAAATGA+TGG - tig0035657:3608-3627 Msa1455280:intergenic 30.0%
!!! AAATTTCGTTTTTTGTAGCC+TGG - tig0035657:3623-3642 Msa1455280:intergenic 30.0%
CAAAAAACGAAATTTGTGAG+AGG + tig0035657:3628-3647 Msa1455280:intron 30.0%
TGCATGCTATAGAATATAGA+TGG - tig0035657:3754-3773 Msa1455280:intergenic 30.0%
CATGCATGTCTAATATATCT+GGG + tig0035657:3768-3787 Msa1455280:intron 30.0%
ATGTTTGCAAAAGATAATGC+CGG - tig0035657:3808-3827 Msa1455280:intergenic 30.0%
TACGGATTCAACATTGTTAA+GGG - tig0035657:3844-3863 Msa1455280:intergenic 30.0%
ATACGGATTCAACATTGTTA+AGG - tig0035657:3845-3864 Msa1455280:intergenic 30.0%
TTAACAATGTTGAATCCGTA+TGG + tig0035657:3844-3863 Msa1455280:intron 30.0%
ATGCTTGTAAAGTTAGTACA+TGG + tig0035657:4057-4076 Msa1455280:intron 30.0%
! TTAATTTGGGAGTTCAATCA+GGG - tig0035657:4426-4445 Msa1455280:intergenic 30.0%
!! TTTAATTTGGGAGTTCAATC+AGG - tig0035657:4427-4446 Msa1455280:intergenic 30.0%
!!! TAGAGATGAACAGTTTTTTG+AGG - tig0035657:4587-4606 Msa1455280:intergenic 30.0%
! TGGAAAAAGCGTATTGATAA+TGG - tig0035657:4705-4724 Msa1455280:intergenic 30.0%
!!! TATCAATACGCTTTTTCCAT+TGG + tig0035657:4706-4725 Msa1455280:CDS 30.0%
TTCAAACAGTTACCATGATT+TGG + tig0035657:4772-4791 Msa1455280:CDS 30.0%
GAATCTAAGAAACCAAATAG+AGG + tig0035657:4878-4897 Msa1455280:CDS 30.0%
GATTTACTATGACCTCTATT+TGG - tig0035657:4893-4912 Msa1455280:intergenic 30.0%
ATAGAAGTTGCATACAATAG+GGG - tig0035657:5042-5061 Msa1455280:intergenic 30.0%
GAATAGAAGTTGCATACAAT+AGG - tig0035657:5044-5063 Msa1455280:intergenic 30.0%
! TACTAATTAGAGGGCATAAT+TGG - tig0035657:5359-5378 Msa1455280:intergenic 30.0%
TACACACGATACTAATTAGA+GGG - tig0035657:5368-5387 Msa1455280:intergenic 30.0%
ATACACACGATACTAATTAG+AGG - tig0035657:5369-5388 Msa1455280:intergenic 30.0%
! ATTCTTTTGCAGAAATCACT+TGG - tig0035657:5809-5828 Msa1455280:intergenic 30.0%
! AATGATAATGAGTGATGAGA+TGG - tig0035657:5869-5888 Msa1455280:intergenic 30.0%
!! TATAAGACCATTTTTCCCTA+TGG - tig0035657:5944-5963 Msa1455280:intergenic 30.0%
!!! ATTGGAAATATTTTGGCTTG+AGG - tig0035657:6278-6297 Msa1455280:intergenic 30.0%
!!! CAACCTATCATCTTTTTTCT+TGG - tig0035657:6316-6335 Msa1455280:intergenic 30.0%
!! AGGGGGTATGAAAATATTTT+GGG - tig0035657:6351-6370 Msa1455280:intergenic 30.0%
!!! ATAATAGATGAGTTTTGGAG+GGG - tig0035657:6387-6406 Msa1455280:intergenic 30.0%
AAAGGTCCATTATTAATGTG+GGG - tig0035657:6474-6493 Msa1455280:intergenic 30.0%
GAAAGGTCCATTATTAATGT+GGG - tig0035657:6475-6494 Msa1455280:intergenic 30.0%
TGAAAGGTCCATTATTAATG+TGG - tig0035657:6476-6495 Msa1455280:intergenic 30.0%
ATAGGGTCACTATTAATGAA+AGG - tig0035657:6492-6511 Msa1455280:intergenic 30.0%
CACATTAGTTGAAATCTGAT+AGG - tig0035657:6510-6529 Msa1455280:intergenic 30.0%
!! CTAGAGTTTTGTCATTCTTT+TGG + tig0035657:6755-6774 Msa1455280:intron 30.0%
TTCATACATGCTATTATTCC+TGG + tig0035657:6866-6885 Msa1455280:CDS 30.0%
!! CATTTCTGGTGTAAGAAATT+CGG + tig0035657:6991-7010 Msa1455280:intron 30.0%
TATAAGTCTACTCTATCAGA+TGG - tig0035657:7119-7138 Msa1455280:intergenic 30.0%
! TTCTTTCTTTTCCTGCTTAT+AGG + tig0035657:7206-7225 Msa1455280:intron 30.0%
! TCTTTCTTTTCCTGCTTATA+GGG + tig0035657:7207-7226 Msa1455280:intron 30.0%
!!! TAGGAACCTTATTGGTTTTT+GGG - tig0035657:7538-7557 Msa1455280:intergenic 30.0%
!!! TTAGGAACCTTATTGGTTTT+TGG - tig0035657:7539-7558 Msa1455280:intergenic 30.0%
TATTCAGTTAGGAACCTTAT+TGG - tig0035657:7546-7565 Msa1455280:intergenic 30.0%
CAAATAATCTGTTAGGTATC+GGG - tig0035657:7788-7807 Msa1455280:intergenic 30.0%
GTTGCTCAAAATCCATTCAA+TGG - tig0035657:2934-2953 Msa1455280:intergenic 35.0%
AGAAATATCCCAAGAAAGTG+AGG + tig0035657:3016-3035 Msa1455280:five_prime_UTR 35.0%
AGGTGAATATGGCAAAAATG+TGG - tig0035657:3051-3070 Msa1455280:intergenic 35.0%
!! ATTGCTTTTCCGTGAAAAGA+TGG - tig0035657:3095-3114 Msa1455280:intergenic 35.0%
CAGGTTAAATATAGGCTCTT+TGG + tig0035657:3151-3170 Msa1455280:intron 35.0%
GAAACACCTAAACTCACTAA+TGG + tig0035657:3272-3291 Msa1455280:intron 35.0%
!! GATTGAACTTTCGAGTTAAC+TGG - tig0035657:3531-3550 Msa1455280:intergenic 35.0%
ACTCGAAAGTTCAATCTGAT+AGG + tig0035657:3535-3554 Msa1455280:intron 35.0%
TTCAATCTGATAGGTGAAGA+AGG + tig0035657:3544-3563 Msa1455280:intron 35.0%
!! GTCCCATCATTTTAAAAACC+AGG + tig0035657:3602-3621 Msa1455280:intron 35.0%
GCATGCATGTCTAATATATC+TGG + tig0035657:3767-3786 Msa1455280:intron 35.0%
ATTCAACATTGTTAAGGGGA+TGG - tig0035657:3839-3858 Msa1455280:intergenic 35.0%
ACGGATTCAACATTGTTAAG+GGG - tig0035657:3843-3862 Msa1455280:intergenic 35.0%
CTAACTTTACAAGCATCTAG+TGG - tig0035657:4053-4072 Msa1455280:intergenic 35.0%
TGTAGCTGTAATGAACTCAT+GGG - tig0035657:4342-4361 Msa1455280:intergenic 35.0%
TAACAGATTGGTGGAAGATT+GGG + tig0035657:4449-4468 Msa1455280:intron 35.0%
CTGACAATCAATAAAAGCCT+TGG - tig0035657:4507-4526 Msa1455280:intergenic 35.0%
TTGATTGTCAGCATGATTCT+CGG + tig0035657:4516-4535 Msa1455280:five_prime_UTR 35.0%
TTCTCGGGTCAGTTTAAATT+TGG + tig0035657:4532-4551 Msa1455280:intron 35.0%
ATATCCCTTGCTTTGCATTT+AGG + tig0035657:4610-4629 Msa1455280:intron 35.0%
! TCTCAACCTCTTTTCTACAA+AGG + tig0035657:4956-4975 Msa1455280:CDS 35.0%
TTGGTTATCACATGGTAAAC+TGG + tig0035657:4981-5000 Msa1455280:CDS 35.0%
TTATCACATGGTAAACTGGT+TGG + tig0035657:4985-5004 Msa1455280:intron 35.0%
TAGAAGTTGCATACAATAGG+GGG - tig0035657:5041-5060 Msa1455280:intergenic 35.0%
CTCTCTTAATATGCTTGTGT+AGG + tig0035657:5112-5131 Msa1455280:intron 35.0%
ACTTCAAGATTTCTACCACA+CGG - tig0035657:5647-5666 Msa1455280:intergenic 35.0%
GGTCAAACTAAAAGAGATAG+AGG - tig0035657:5841-5860 Msa1455280:intergenic 35.0%
ATGAGTGATGAGATGGATAA+TGG - tig0035657:5862-5881 Msa1455280:intergenic 35.0%
TTCAACACCATAGGGAAAAA+TGG + tig0035657:5934-5953 Msa1455280:intron 35.0%
ATTGGAACAGGATGAAAGTA+AGG - tig0035657:6024-6043 Msa1455280:intergenic 35.0%
TTCTGTTGTACAGTTACAGA+GGG - tig0035657:6204-6223 Msa1455280:intergenic 35.0%
TTTCTGTTGTACAGTTACAG+AGG - tig0035657:6205-6224 Msa1455280:intergenic 35.0%
!!! GAAATATTTTGGCTTGAGGA+AGG - tig0035657:6274-6293 Msa1455280:intergenic 35.0%
!! AATATTTTGGGCAACGGTTA+TGG - tig0035657:6339-6358 Msa1455280:intergenic 35.0%
!! CAGGGGGTATGAAAATATTT+TGG - tig0035657:6352-6371 Msa1455280:intergenic 35.0%
!!! TAATAGATGAGTTTTGGAGG+GGG - tig0035657:6386-6405 Msa1455280:intergenic 35.0%
AAGGTCCATTATTAATGTGG+GGG - tig0035657:6473-6492 Msa1455280:intergenic 35.0%
AACAGCTACAGCATTTACTT+AGG - tig0035657:6679-6698 Msa1455280:intergenic 35.0%
!!! GCTGTAGCTGTTGATTTTTT+CGG + tig0035657:6687-6706 Msa1455280:intron 35.0%
! CTTTCTTTTCCTGCTTATAG+GGG + tig0035657:7208-7227 Msa1455280:intron 35.0%
AATATTCATCCCCTATAAGC+AGG - tig0035657:7220-7239 Msa1455280:intergenic 35.0%
!!! TTTTGCTCTAGGATTACAGA+GGG - tig0035657:7486-7505 Msa1455280:intergenic 35.0%
! TATTGATTAGGAGTGGTTAC+AGG - tig0035657:7633-7652 Msa1455280:intergenic 35.0%
TGTATTCATTAGGAGCAGTT+AGG - tig0035657:7675-7694 Msa1455280:intergenic 35.0%
GCTGATAAAGTGCAAACCAT+TGG - tig0035657:2829-2848 None:intergenic 40.0%
! TGGATTTTGAGCAACTGTGA+TGG + tig0035657:2939-2958 Msa1455280:five_prime_UTR 40.0%
ACCTCAAAAGAATGTTGCCA+AGG + tig0035657:3067-3086 Msa1455280:five_prime_UTR 40.0%
CCTCAAAAGAATGTTGCCAA+GGG + tig0035657:3068-3087 Msa1455280:five_prime_UTR 40.0%
! AGTTTAGGTGTTTCTGTGAG+AGG - tig0035657:3266-3285 Msa1455280:intergenic 40.0%
CTTAAGGGAACAGAAAGTAG+TGG - tig0035657:3692-3711 Msa1455280:intergenic 40.0%
GCAAACCACTCAAGTCTTAA+GGG - tig0035657:3707-3726 Msa1455280:intergenic 40.0%
TTACTACAGCTGAAGTCATG+TGG - tig0035657:3729-3748 Msa1455280:intergenic 40.0%
!! TTGAGAGGAGTATCACCATA+CGG - tig0035657:3862-3881 Msa1455280:intergenic 40.0%
!!! TTTCTGTTTTAGAGGCTGCT+AGG + tig0035657:3921-3940 Msa1455280:intron 40.0%
!! ATCTAGTGGACTCCATATCA+TGG - tig0035657:4039-4058 Msa1455280:intergenic 40.0%
GCAATACATCAGCTCTGTTT+AGG - tig0035657:4190-4209 Msa1455280:intergenic 40.0%
TGATGCTGCTCATGTAAGAT+GGG + tig0035657:4241-4260 Msa1455280:intron 40.0%
CTGTAGCTGTAATGAACTCA+TGG - tig0035657:4343-4362 Msa1455280:intergenic 40.0%
CTAACAGATTGGTGGAAGAT+TGG + tig0035657:4448-4467 Msa1455280:intron 40.0%
TGATTGTCAGCATGATTCTC+GGG + tig0035657:4517-4536 Msa1455280:five_prime_UTR 40.0%
GACACCTAAATGCAAAGCAA+GGG - tig0035657:4617-4636 Msa1455280:intergenic 40.0%
TGACACCTAAATGCAAAGCA+AGG - tig0035657:4618-4637 Msa1455280:intergenic 40.0%
CATTGTTAGTCGCCAAATCA+TGG - tig0035657:4787-4806 Msa1455280:intergenic 40.0%
TGGTTTCTTAGATTCATCGG+TGG - tig0035657:4873-4892 Msa1455280:intergenic 40.0%
CCAACACCTTTGTAGAAAAG+AGG - tig0035657:4965-4984 Msa1455280:intergenic 40.0%
!! CCTCTTTTCTACAAAGGTGT+TGG + tig0035657:4962-4981 Msa1455280:CDS 40.0%
!! CAAAGGTGTTGGTTATCACA+TGG + tig0035657:4973-4992 Msa1455280:CDS 40.0%
AAATGCATTCTCACAGCTGA+GGG - tig0035657:5511-5530 Msa1455280:intergenic 40.0%
TAAATGCATTCTCACAGCTG+AGG - tig0035657:5512-5531 Msa1455280:intergenic 40.0%
TATCTTCTGTTTGCTTCCAG+TGG + tig0035657:5543-5562 Msa1455280:intron 40.0%
! ACAACTTCTGAAGATAGTGC+TGG - tig0035657:5621-5640 Msa1455280:intergenic 40.0%
AGAACATGTCAACTTGTGCT+TGG + tig0035657:5678-5697 Msa1455280:CDS 40.0%
GAACATGTCAACTTGTGCTT+GGG + tig0035657:5679-5698 Msa1455280:CDS 40.0%
AACATGTCAACTTGTGCTTG+GGG + tig0035657:5680-5699 Msa1455280:CDS 40.0%
! TCCCTATGGTGTTGAATGTT+GGG - tig0035657:5930-5949 Msa1455280:intergenic 40.0%
! TTCCCTATGGTGTTGAATGT+TGG - tig0035657:5931-5950 Msa1455280:intergenic 40.0%
ATGGATGAGAAGATTGGAAC+AGG - tig0035657:6036-6055 Msa1455280:intergenic 40.0%
GCTCTGCAATTTACAATCTG+AGG + tig0035657:6173-6192 Msa1455280:intron 40.0%
!!! AATAGATGAGTTTTGGAGGG+GGG - tig0035657:6385-6404 Msa1455280:intergenic 40.0%
TTCTCCCCCCACATTAATAA+TGG + tig0035657:6465-6484 Msa1455280:intron 40.0%
AGGTCCATTATTAATGTGGG+GGG - tig0035657:6472-6491 Msa1455280:intergenic 40.0%
TGTGTTAATGAAACCCAGCT+TGG + tig0035657:6526-6545 Msa1455280:intron 40.0%
GTGTTAATGAAACCCAGCTT+GGG + tig0035657:6527-6546 Msa1455280:intron 40.0%
TGTTAATGAAACCCAGCTTG+GGG + tig0035657:6528-6547 Msa1455280:intron 40.0%
GCTTATATATTGTCCTGCAC+TGG + tig0035657:6577-6596 Msa1455280:intron 40.0%
TTTAACTCAGCATTGTCCTG+CGG - tig0035657:6610-6629 Msa1455280:intergenic 40.0%
CTAAATTGTGTTCAGGTGTC+TGG + tig0035657:6791-6810 Msa1455280:intron 40.0%
AAGTCTACTCTATCAGATGG+AGG - tig0035657:7116-7135 Msa1455280:intergenic 40.0%
GGATTGGAGAATCATTGCAA+GGG - tig0035657:7321-7340 Msa1455280:intergenic 40.0%
CAAAGGAAAAGTAGAGGGAT+TGG - tig0035657:7337-7356 Msa1455280:intergenic 40.0%
CCACTCAAAGGAAAAGTAGA+GGG - tig0035657:7342-7361 Msa1455280:intergenic 40.0%
TCCACTCAAAGGAAAAGTAG+AGG - tig0035657:7343-7362 Msa1455280:intergenic 40.0%
!!! CTTTTGCTCTAGGATTACAG+AGG - tig0035657:7487-7506 Msa1455280:intergenic 40.0%
TCTCTGCCCAAAAACCAATA+AGG + tig0035657:7529-7548 Msa1455280:three_prime_UTR 40.0%
ACCATTTGGCAACAACAGTA+GGG - tig0035657:7580-7599 Msa1455280:intergenic 40.0%
!! ATAATCTGTTAGGTATCGGG+TGG - tig0035657:7785-7804 Msa1455280:intergenic 40.0%
!! CTAAAGTGCTGAGTAACTGA+AGG + tig0035657:7820-7839 Msa1455280:three_prime_UTR 40.0%
GATTGCAGGCACATTTAGTG+CGG + tig0035657:2889-2908 Msa1455280:five_prime_UTR 45.0%
ATTGCAGGCACATTTAGTGC+GGG + tig0035657:2890-2909 Msa1455280:five_prime_UTR 45.0%
ACCACGAACCTCACTTTCTT+GGG - tig0035657:3027-3046 Msa1455280:intergenic 45.0%
TACCACGAACCTCACTTTCT+TGG - tig0035657:3028-3047 Msa1455280:intergenic 45.0%
! CCCTTGGCAACATTCTTTTG+AGG - tig0035657:3071-3090 Msa1455280:intergenic 45.0%
CTGTTCCCTTAAGACTTGAG+TGG + tig0035657:3699-3718 Msa1455280:intron 45.0%
GGCAAACCACTCAAGTCTTA+AGG - tig0035657:3708-3727 Msa1455280:intergenic 45.0%
! CTGGGACATTTTCTTGTTGC+CGG + tig0035657:3786-3805 Msa1455280:intron 45.0%
TGGGGGTTAAGACCATGATA+TGG + tig0035657:4024-4043 Msa1455280:intron 45.0%
GTGATGCTGCTCATGTAAGA+TGG + tig0035657:4240-4259 Msa1455280:intron 45.0%
TGTAAGATGGGCAAAGCTTC+TGG + tig0035657:4253-4272 Msa1455280:five_prime_UTR 45.0%
GTAAGATGGGCAAAGCTTCT+GGG + tig0035657:4254-4273 Msa1455280:five_prime_UTR 45.0%
TAAGATGGGCAAAGCTTCTG+GGG + tig0035657:4255-4274 Msa1455280:five_prime_UTR 45.0%
AACTCCTGCAGTTTCAACCT+AGG - tig0035657:4299-4318 Msa1455280:intergenic 45.0%
AGATTGGGATACAGCATCTG+TGG + tig0035657:4464-4483 Msa1455280:five_prime_UTR 45.0%
GATTGGGATACAGCATCTGT+GGG + tig0035657:4465-4484 Msa1455280:five_prime_UTR 45.0%
AATTATGGCAGTGCATGACC+AGG + tig0035657:4640-4659 Msa1455280:exon 45.0%
AGTGCATGACCAGGAAACAT+GGG + tig0035657:4649-4668 Msa1455280:CDS 45.0%
CCAGAAGACAATGCATCCAA+TGG - tig0035657:4725-4744 Msa1455280:intergenic 45.0%
CCATTGGATGCATTGTCTTC+TGG + tig0035657:4722-4741 Msa1455280:CDS 45.0%
TGGCGACTAACAATGATGCT+CGG + tig0035657:4792-4811 Msa1455280:CDS 45.0%
! TGGTAAACTGGTTGGTCATC+TGG + tig0035657:4993-5012 Msa1455280:intron 45.0%
TCACAGCTGAGGGCTAAAAT+GGG - tig0035657:5501-5520 Msa1455280:intergenic 45.0%
CTTGAGCAATATCAAGCCAC+TGG - tig0035657:5562-5581 Msa1455280:intergenic 45.0%
!! CTGAAGATAGTGCTGGCAAA+AGG - tig0035657:5614-5633 Msa1455280:intergenic 45.0%
TTCAGAAGTTGTTCTCCGTG+TGG + tig0035657:5629-5648 Msa1455280:CDS 45.0%
GTTGAATGTTGGGCAGTGAA+GGG - tig0035657:5920-5939 Msa1455280:intergenic 45.0%
TGTTGAATGTTGGGCAGTGA+AGG - tig0035657:5921-5940 Msa1455280:intergenic 45.0%
TGCCCAACATTCAACACCAT+AGG + tig0035657:5925-5944 Msa1455280:intron 45.0%
GCCCAACATTCAACACCATA+GGG + tig0035657:5926-5945 Msa1455280:intron 45.0%
! GGAAGCATGGATGAGAAGAT+TGG - tig0035657:6042-6061 Msa1455280:intergenic 45.0%
CATCAAAGAGCTCAGATCCT+TGG - tig0035657:6102-6121 Msa1455280:intergenic 45.0%
GCAGAAACGAAGAAGACAGT+TGG + tig0035657:6240-6259 Msa1455280:intron 45.0%
!!! ATAGATGAGTTTTGGAGGGG+GGG - tig0035657:6384-6403 Msa1455280:intergenic 45.0%
CAATATATGCTCCCCAAGCT+GGG - tig0035657:6542-6561 Msa1455280:intergenic 45.0%
TCAATATATGCTCCCCAAGC+TGG - tig0035657:6543-6562 Msa1455280:intergenic 45.0%
AGGAAGGCGAAAAAGGGATT+AGG - tig0035657:7096-7115 Msa1455280:intergenic 45.0%
AGATGGAGGAAGGCGAAAAA+GGG - tig0035657:7102-7121 Msa1455280:intergenic 45.0%
CTACTCTATCAGATGGAGGA+AGG - tig0035657:7112-7131 Msa1455280:intergenic 45.0%
TCATTGCAAGGGAGACTACA+TGG - tig0035657:7310-7329 Msa1455280:intergenic 45.0%
GGGATTGGAGAATCATTGCA+AGG - tig0035657:7322-7341 Msa1455280:intergenic 45.0%
!! CCCTCTACTTTTCCTTTGAG+TGG + tig0035657:7339-7358 Msa1455280:three_prime_UTR 45.0%
AGAGAGATGTCTCTTCTCTG+AGG - tig0035657:7512-7531 Msa1455280:intergenic 45.0%
TCCCTACTGTTGTTGCCAAA+TGG + tig0035657:7576-7595 Msa1455280:three_prime_UTR 45.0%
GACCATTTGGCAACAACAGT+AGG - tig0035657:7581-7600 Msa1455280:intergenic 45.0%
!! GGTATCGGGTGGTATTGATA+GGG - tig0035657:7774-7793 Msa1455280:intergenic 45.0%
!! AGGTATCGGGTGGTATTGAT+AGG - tig0035657:7775-7794 Msa1455280:intergenic 45.0%
!! TTAAAAAAAAAAAAACAAAA+TGG - tig0035657:6063-6082 Msa1455280:intergenic 5.0%
GTTGCTGCAGCAATTGCACA+TGG + tig0035657:2981-3000 Msa1455280:five_prime_UTR 50.0%
TCCCAAGAAAGTGAGGTTCG+TGG + tig0035657:3023-3042 Msa1455280:five_prime_UTR 50.0%
! GCCAAGGGTCCATCTTTTCA+CGG + tig0035657:3083-3102 Msa1455280:five_prime_UTR 50.0%
TCCGTGAAAAGATGGACCCT+TGG - tig0035657:3087-3106 Msa1455280:intergenic 50.0%
AAGATGGGCAAAGCTTCTGG+GGG + tig0035657:4256-4275 Msa1455280:five_prime_UTR 50.0%
ACCTAGGATGGAGAGTAGCA+CGG - tig0035657:4283-4302 Msa1455280:intergenic 50.0%
CCTGCAGTTTCAACCTAGGA+TGG - tig0035657:4295-4314 Msa1455280:intergenic 50.0%
! CCATCCTAGGTTGAAACTGC+AGG + tig0035657:4292-4311 Msa1455280:five_prime_UTR 50.0%
CTGTGGGATACTGCATTCAC+AGG + tig0035657:4481-4500 Msa1455280:five_prime_UTR 50.0%
GATACTGCATTCACAGGCCA+AGG + tig0035657:4487-4506 Msa1455280:five_prime_UTR 50.0%
CAGTGCATGACCAGGAAACA+TGG + tig0035657:4648-4667 Msa1455280:CDS 50.0%
CTATCTCCACCCATGTTTCC+TGG - tig0035657:4661-4680 Msa1455280:intergenic 50.0%
TAACAATGATGCTCGGCCGA+TGG + tig0035657:4799-4818 Msa1455280:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - tig0035657:5080-5099 Msa1455280:intergenic 50.0%
CTCACAGCTGAGGGCTAAAA+TGG - tig0035657:5502-5521 Msa1455280:intergenic 50.0%
AACAACAGAATGGGGCACGT+GGG - tig0035657:6446-6465 Msa1455280:intergenic 50.0%
AAACAACAGAATGGGGCACG+TGG - tig0035657:6447-6466 Msa1455280:intergenic 50.0%
GGGGGAGAAACAACAGAATG+GGG - tig0035657:6454-6473 Msa1455280:intergenic 50.0%
GGGGGGAGAAACAACAGAAT+GGG - tig0035657:6455-6474 Msa1455280:intergenic 50.0%
TGGGGGGAGAAACAACAGAA+TGG - tig0035657:6456-6475 Msa1455280:intergenic 50.0%
GTCCATCACCTCTAAACACC+TGG + tig0035657:6820-6839 Msa1455280:CDS 50.0%
CAGGTGTGCGAATTTGTACC+AGG - tig0035657:6887-6906 Msa1455280:intergenic 50.0%
! AGACATTGATCGAGTTGCGC+AGG + tig0035657:7064-7083 Msa1455280:CDS 50.0%
CAGATGGAGGAAGGCGAAAA+AGG - tig0035657:7103-7122 Msa1455280:intergenic 50.0%
!! CTCTGAGGAGCTTTTGCTCT+AGG - tig0035657:7497-7516 Msa1455280:intergenic 50.0%
! TCCGTGCTACTCTCCATCCT+AGG + tig0035657:4279-4298 Msa1455280:five_prime_UTR 55.0%
GCATGACCAGGAAACATGGG+TGG + tig0035657:4652-4671 Msa1455280:CDS 55.0%
GACTGTCCAGTGTCTGCCAT+CGG - tig0035657:4818-4837 Msa1455280:intergenic 55.0%
GCTTGGGGCTAAAGCAATGC+AGG + tig0035657:5695-5714 Msa1455280:CDS 55.0%
AGGGGGGGTAACAGTATCAG+GGG - tig0035657:6369-6388 Msa1455280:intergenic 55.0%
GAGGGGGGGTAACAGTATCA+GGG - tig0035657:6370-6389 Msa1455280:intergenic 55.0%
ACAACAGAATGGGGCACGTG+GGG - tig0035657:6445-6464 Msa1455280:intergenic 55.0%
CTGCGGTTTCTTTCCAGTGC+AGG - tig0035657:6593-6612 Msa1455280:intergenic 55.0%
CTGCACTGGAAAGAAACCGC+AGG + tig0035657:6591-6610 Msa1455280:intron 55.0%
CGCCAGGTGTTTAGAGGTGA+TGG - tig0035657:6825-6844 Msa1455280:intergenic 55.0%
GCAGGCACATTTAGTGCGGG+CGG + tig0035657:2893-2912 Msa1455280:five_prime_UTR 60.0%
GGGGGGGTAACAGTATCAGG+GGG - tig0035657:6368-6387 Msa1455280:intergenic 60.0%
GGAGGGGGGGTAACAGTATC+AGG - tig0035657:6371-6390 Msa1455280:intergenic 60.0%
AATGGGGCACGTGGGGTAAG+GGG - tig0035657:6438-6457 Msa1455280:intergenic 60.0%
GAATGGGGCACGTGGGGTAA+GGG - tig0035657:6439-6458 Msa1455280:intergenic 60.0%
AGAATGGGGCACGTGGGGTA+AGG - tig0035657:6440-6459 Msa1455280:intergenic 60.0%
CACCTCTAAACACCTGGCGC+TGG + tig0035657:6826-6845 Msa1455280:CDS 60.0%
TGCCAGCGCCAGGTGTTTAG+AGG - tig0035657:6831-6850 Msa1455280:intergenic 60.0%
!! TGACTTGACTTGCCAGCGCC+AGG - tig0035657:6841-6860 Msa1455280:intergenic 60.0%
GCTCGGCCGATGGCAGACAC+TGG + tig0035657:4809-4828 Msa1455280:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0035657 gene 2825 7993 2825 ID=Msa1455280;Name=Msa1455280
tig0035657 mRNA 2825 7993 2825 ID=Msa1455280-mRNA-1;Parent=Msa1455280;Name=Msa1455280-mRNA-1;_AED=0.16;_eAED=0.16;_QI=573|1|1|1|0.75|0.66|9|730|236
tig0035657 exon 2825 3153 2825 ID=Msa1455280-mRNA-1:exon:20206;Parent=Msa1455280-mRNA-1
tig0035657 exon 4196 4224 4196 ID=Msa1455280-mRNA-1:exon:20207;Parent=Msa1455280-mRNA-1
tig0035657 exon 4249 4367 4249 ID=Msa1455280-mRNA-1:exon:20208;Parent=Msa1455280-mRNA-1
tig0035657 exon 4455 4538 4455 ID=Msa1455280-mRNA-1:exon:20209;Parent=Msa1455280-mRNA-1
tig0035657 exon 4632 5002 4632 ID=Msa1455280-mRNA-1:exon:20210;Parent=Msa1455280-mRNA-1
tig0035657 exon 5563 5716 5563 ID=Msa1455280-mRNA-1:exon:20211;Parent=Msa1455280-mRNA-1
tig0035657 exon 6806 6887 6806 ID=Msa1455280-mRNA-1:exon:20212;Parent=Msa1455280-mRNA-1
tig0035657 exon 7006 7085 7006 ID=Msa1455280-mRNA-1:exon:20213;Parent=Msa1455280-mRNA-1
tig0035657 exon 7228 7993 7228 ID=Msa1455280-mRNA-1:exon:20214;Parent=Msa1455280-mRNA-1
tig0035657 five_prime_UTR 2825 3153 2825 ID=Msa1455280-mRNA-1:five_prime_utr;Parent=Msa1455280-mRNA-1
tig0035657 five_prime_UTR 4196 4224 4196 ID=Msa1455280-mRNA-1:five_prime_utr;Parent=Msa1455280-mRNA-1
tig0035657 five_prime_UTR 4249 4367 4249 ID=Msa1455280-mRNA-1:five_prime_utr;Parent=Msa1455280-mRNA-1
tig0035657 five_prime_UTR 4455 4538 4455 ID=Msa1455280-mRNA-1:five_prime_utr;Parent=Msa1455280-mRNA-1
tig0035657 five_prime_UTR 4632 4643 4632 ID=Msa1455280-mRNA-1:five_prime_utr;Parent=Msa1455280-mRNA-1
tig0035657 CDS 4644 5002 4644 ID=Msa1455280-mRNA-1:cds;Parent=Msa1455280-mRNA-1
tig0035657 CDS 5563 5716 5563 ID=Msa1455280-mRNA-1:cds;Parent=Msa1455280-mRNA-1
tig0035657 CDS 6806 6887 6806 ID=Msa1455280-mRNA-1:cds;Parent=Msa1455280-mRNA-1
tig0035657 CDS 7006 7085 7006 ID=Msa1455280-mRNA-1:cds;Parent=Msa1455280-mRNA-1
tig0035657 CDS 7228 7263 7228 ID=Msa1455280-mRNA-1:cds;Parent=Msa1455280-mRNA-1
tig0035657 three_prime_UTR 7264 7993 7264 ID=Msa1455280-mRNA-1:three_prime_utr;Parent=Msa1455280-mRNA-1
Gene Sequence

>Msa1455280

ATGGCAGTGCATGACCAGGAAACATGGGTGGAGATAGATGTTCCTGATGAATTTCAATCCATTATCAATACGCTTTTTCCATTGGATGCATTGTCTTCTGGAGACCCTAATTGTGTTGAAGAAGATAATTCAAACAGTTACCATGATTTGGCGACTAACAATGATGCTCGGCCGATGGCAGACACTGGACAGTCAAATGCTGAACAGAATGTTGAGCAGACTGATTCCACCGATGAATCTAAGAAACCAAATAGAGGTCATAGTAAATCGTTAGAGAGTATCAGCACTGAGAAAGATCAGAAAAAATCTGCATCTCAACCTCTTTTCTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTGATATTGCTCAAGATGTTGTCAGAATACATTGATATGAACAACCTTTTGCCAGCACTATCTTCAGAAGTTGTTCTCCGTGTGGTAGAAATCTTGAAGTGTTTCAACACAAGAACATGTCAACTTGTGCTTGGGGCTAAAGCAATGCAGGTGTCTGGTTTGAAGTCCATCACCTCTAAACACCTGGCGCTGGCAAGTCAAGTCATTAGTTTCATACATGCTATTATTCCTGAAATTCGGCAGATTCTTTTTCTGAAAGTTCCAGAGAATAGAAAATTGCTATTGCTTTCAGACATTGATCGAGTTGCGCAGGGGATGAATATTTATGATTTACAATTCCTCATATAA
Protein sequence

>Msa1455280

MAVHDQETWVEIDVPDEFQSIINTLFPLDALSSGDPNCVEEDNSNSYHDLATNNDARPMADTGQSNAEQNVEQTDSTDESKKPNRGHSKSLESISTEKDQKKSASQPLFYKGVGYHMVNCGLILLKMLSEYIDMNNLLPALSSEVVLRVVEILKCFNTRTCQLVLGAKAMQVSGLKSITSKHLALASQVISFIHAIIPEIRQILFLKVPENRKLLLLSDIDRVAQGMNIYDLQFLI*